the complete and easy guide to configuring your thermo ......slide 26 room temp 27 pre-col + packed...

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The world leader in serving science December 2015 The Complete and Easy Guide to Configuring Your Thermo Scientific™ Nano LC for Mass Spectrometric Analysis

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Page 1: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

The world leader in serving science

December 2015

The Complete and Easy Guide to Configuring Your Thermo Scientific™ Nano LC for Mass Spectrometric Analysis

Page 2: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

2

• Thermo Scientific™ EASY-nLC™ 1200/1000 selection tree → Slide 3

• EASY-nLC II selection tree → Slide 4

• Thermo Scientific™ UltiMate™ 3000 RSLCnano selection tree → Slide 5

• ‘How to’ Guideline → Slide 39

Content

Page 3: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

3

Go to slide

Column setup

HV junction

Source

LCEASY-nLC 1200/1000

Thermo Scientific™

EASY-Spray™

Pre-Col+

EASY-Spray

Column

Slide 6

EASY-Spray

Column

Slide 7

EASY-Spray emitter

+ Column

Slide 14

EASY-Spray emitter + No

column

Slide 15

Thermo Scientific™

Nanospray™ Flex

Liquid Junction

Pre-Col +

Column+

Emitter

Slide 8

Pre-Col +

Packed Emitter

Slide 9

Column+

Emitter

Slide 10

Packed Emitter

Slide 11

HV on Emitter

Pre-Col +

Column +

Emitter

Slide 12

Column +

Emitter

Slide 13

Selection Tree EASY-nLC 1200/1000

Page 4: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

4

Go to slide

Column setup

HV junction

Source

LC EASY-nLC II

EASY-Spray

Pre-Col +

EASY-Spray

Column

Slide 16

EASY-Spray

Column

Slide 17

EASY-Spray emitter

+ Column

Slide 14

Easy-Spray

emitter+

no column

Slide 15

Nanospray Flex

Liquid Junction

Pre-Col +

Column +

Emitter

Slide 18

Pre-Col+

Packed Emitter

Slide 19

Column+

Emitter

Slide 20

Packed Emitter

Slide 21

HV on Emitter

Pre-Col+

Column +

Emitter

Slide 22

Column+

Emitter

Slide 23

Selection Tree EASY-nLC II

Page 5: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

5

Go to slide

Column heating

Column setup

HV junction

Source

LC RSLCnano

EASY-Spray

Pre-Col+

EASY-Spray

Column

Slide 24

EASY-Spray

Column

Slide 25

EASY-Spray emitter

+ Column

Slide 14

EASY-Spray emitter + no

column

Slide 15

Nanospray Flex

Liquid Junction

Pre-Col

+

Column+

Emitter

Heated

Slide 26

Room Temp

Slide 27

Pre-Col+

Packed Emitter

Slide 28

Column+

Emitter

Heated

Slide 29

Room Temp

Slide 30

Packed Emitter

Slide 31

HV on Emitter

Pre-Col +

Column+

Emitter

Heated

Slide 32

RoomTemp

Slide 33

Column +

Emitter

Heated

Slide 34

RoomTemp

Slide 35

Selection Tree UltiMate 3000 RSLCnano

Page 6: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

6

EASY-nLC 1200/1000 with Pre-column and EASY-Spray Column

Schematic

Item Image P/N

HPLC-to-column connector SC900

Thermo Scientific™

Acclaim™ PepMap™ pre-

column

164705

A/B mixing tee & venting Tee SC901

EASY-Spray column

https://www.thermoscientif

ic.com/en/about-

us/videos/thermo-

scientific-easy-spray-

columns.html

Consumables

Return to selection page EASY-nLC 1200/1000

Page 7: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

7

Schematic Consumables

Item Image P/N

A/B mixing tee & venting

TeeSC901

EASY-Spray column

https://www.thermoscientifi

c.com/en/about-

us/videos/thermo-scientific-

easy-spray-columns.html

EASY-nLC 1200/1000 with EASY-Spray Column

Return to selection page EASY-nLC 1200/1000

Page 8: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

8

EASY-nLC 1200/1000 with Liquid Junction, Pre-column, Analytical Column and Silica Emitter

UHPLC Schematic – PreferredConsumables

Item Image P/N

Column Out Tubing

Waste In Tubing

Viper™ on LC side only

Viper on LC side only

6041.5290

6041.5289

Union

For 360 µm O.D.ES272

UHPLC Liquid Junction

Kit

360 µm cross

ES269

HPLC Liquid Junction

Cross 1/32” + Beige

Sleeves

ES257

MicroTight® Union

Assembly 1/32"G10-0035

Sleeves for connecting

360 µm O.D. capillary to

unions*

SC603*

Silica EmitterFS360-20-10-N-20

(New Objective)

ES272

**

HPLC Schematic – 300 bar max

Analy

tical

Colu

mn

Pre

-

Colu

mn

HV

Waste In Tubing

6041.5289Column Out Tubing

6041.5290Liquid Junction Cross

PEEK™

Union

PEEK™

Union

Silica Emitter

* ***

*

**

Return to selection page EASY-nLC 1200/1000

Page 9: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

9

UHPLC Schematic – Preferred

Item Image P/N

Column out tubing

Waste in tubing

Viper on LC Side Only

Viper on LC Side Only

6041.5290

6041.5289

Union

For 360 µm O.D.

ES272

UHPLC Liquid Junction

Kit 360 µm cross

ES269

HPLC Liquid Junction

Cross 1/32”+ Beige

Sleeves

ES257

MicroTight® Union

Assembly 1/32"

G10-0035

Sleeves for connecting

360 µm O.D. capillary

to unions*

SC603*

ConsumablesES272

Packed

Emitter

Pre

-

Colu

mn

HV

Waste In Tubing

6041.5289Column Out Tubing

6041.5290 Liquid Junction Cross

PEEK

Union

*

*

***

EASY-nLC 1200/1000 with Liquid Junction, Pre-column and Packed Emitter

HPLC Schematic – 300 bar max

Return to selection page EASY-nLC 1200/1000

Page 10: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

10

UHPLC Schematic – Preferred

Item Image P/N

Column Out Tubing

Waste In Tubing

Viper on LC side only

Viper on LC side only

6041.5290

6041.5289

UHPLC Liquid

Junction Kit 360 µm

cross

ES269

HPLC Liquid Junction

Cross 1/32”+ Beige

Sleeves

ES257

MicroTight® Union

Assembly 1/32"G10-0035

Sleeves for connecting

360 µm O.D. capillary

to unions*

SC603*

Silica EmitterFS360-20-10-N-20

(New Objective)

Consumables

Analy

tical

Colu

mn

HV

Waste In Tubing

6041.5289

Liquid Junction Cross

PEEK

Union

Silica EmitterColumn Out Tubing

6041.5290

***

*

*

**

EASY-nLC 1200/1000 with Liquid Junction, Analytical Column and Silica Emitter

HPLC Schematic – 300 bar max

Return to selection page EASY-nLC 1200/1000

Page 11: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

11

EASY-nLC 1200/1000 with Liquid Junction and Packed Emitter

UHPLC Schematic – Preferred

Consumables

Item Image P/N

Column out tubing

Waste in tubing

Viper on LC Side Only

Viper on LC Side Only

6041.5290

6041.5289

UHPLC Liquid

Junction Kit 360 µm

cross

ES269

HPLC Liquid Junction

Cross 1/32”+ Beige

Sleeves

ES257

Sleeves for connecting

360 µm O.D. capillary

to union*

SC603*

HPLC Schematic – 300 bar max

HV

Waste In Tubing

6041.5289

Packed Emitter

Column Out Tubing

6041.5290 Liquid Junction Cross

*

*

*

Return to selection page EASY-nLC 1200/1000

Page 12: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

12

ConsumablesItem Image P/N

HPLC-to-column

connector SC900

A/B mixing tee & venting

TeeSC901

MicroTight® Union

Assembly 1/32"G10-0035

Sleeves for connecting

280 µm O.D. capillary SC903

Metal Emitter ES542

Column Out Tubing

Waste In Tubing

Viper on LC side

only

Viper on LC side

only

6041.5290*

6041.5289*

Union for

360 µm O.D.ES272

Ultra High Pressure

MicroTee for 360 µm O.D.

Tubing

(IDEX) UH-750

Sleeves for connecting

360 µm O.D. capillary to

unions

SC603

Viper Column Schematic

Viper

Union

Pre-

Column

Analytical

Column

Peak Union

Metal

Emitter

Mixing/Venting

Tee

Column Out

Line to LC

Waste In Line from LC

Black

Sleeve

Analy

tical

Colu

mn

Pre

-

Colu

mn

Waste In Tubing

6041.5289Column Out Tubing

6041.5290Venting

Tee

PEEK

Union

Metal EmitterBeige

Sleeve

Union for

360 µm O.D.

Non-Viper Column Schematic

*For non-Viper Column Connections

EASY-nLC 1200/1000 with Pre-column, Analytical Column and Metal Emitter

Return to selection page EASY-nLC 1200/1000

Page 13: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

13

Consumables

Item Image P/N

A/B mixing tee & venting

TeeSC901

MicroTight® Union

Assembly 1/32"G10-0035

Sleeves for connecting

280 µm O.D. capillary to

unions

SC903

Metal Emitter, I.D. 30µm,

O.D. 150mm , 40mm with

sleeve O.D. 1/32

ES542

Column Out Tubing

Waste In Tubing

Viper on LC side

only

Viper on LC side

only

6041.5290*

6041.5289*

Ultra High Pressure

MicroTee for 360 µm

O.D. Tubing

(IDEX) UH750

Sleeves for connecting

360 µm O.D. capillary to

unions

SC603

Viper Column Schematic

Non-Viper Column Schematic

Analytical

Column Peek

Union

Mixing/Venting

Tee

Column Out to LC

Waste In Line from LC

Metal

Emitter

Black

Sleeve

Analy

tical

Colu

mn

Waste In Tubing

6041.5289

Venting

Tee

PEEK

Union

Metal EmitterColumn Out Tubing

6041.5290Beige

Sleeve

EASY-nLC 1200/1000 with Analytical Column and Metal Emitter

Return to selection page EASY-nLC 1200/1000*For non-Viper Column Connections

Page 14: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

14

EASY-nLC II, EASY-nLC 1200/1000 and RSLCnano with Analytical Column and EASY-Spray nanoflow/microflow emitter

Schematic Item Image P/N

MicroTight® adapter for

1/16” to 1/32”00109-02-00055

EASY-Spray emitter for

nanoflow.

7µm ID emitter with a 50

cm x 20 µm ID nanoviper

equipped transferline

ES791

EASY-Spray emitter for

microflow.

20µm ID emitter with 50

cm x 75 µm ID nanoviper

equipped transferline

ES792

Sleeves for connecting

280 µm O.D. capillary to

union

SC903

Sleeves for connecting

360 µm O.D. capillary to

union

SC603

Consumables

*For non-Viper Column Connections:

Choice of sleeves are column O.D. dependent:

280 µm O.D. (black sleeve) and 360 µm I.D. (beige

sleeve)

Return to selection page EASY-nLC 1200/1000

Analytical

Column

Sleeve(black/beige)*

PEEK

UnionEASY-Spray emitter

Return to selection page EASY-nLC II Return to selection page RSLCnano

Page 15: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

15

EASY-nLC II, and EASY-nLC 1200/1000 directly connected to EASY-Spray nanoflow/microflow emitter

Schematic

Item Image P/N

A/B mixing tee & venting

TeeSC901

EASY-Spray emitter for

nanoflow.

7µm ID emitter with a 50

cm x 20 µm ID nanoviper

equipped transferline

ES791

EASY-Spray emitter for

microflow.

20µm ID emitter with 50

cm x 75 µm ID nanoviper

equipped transferline

ES792

Consumables

Mixing/Venting

Tee

Column Out to LC

Waste In Line from LC

EASY-Spray emitter

Return to selection page EASY-nLC 1200/1000 Return to selection page EASY-nLC II Return to selection page RSLCnano

Page 16: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

16

EASY-nLC II with Precolumn and EASY-Spray Column

Schematic

Consumables

Item Image P/N

MicroTight® adapter for

1/16” to 1/32”00109-02-00055

Acclaim Pepmap 100

C18 precolumn164705

A/B mixing & venting

TeeSC901

EASY-Spray column

https://www.thermoscie

ntific.com/en/about-

us/videos/thermo-

scientific-easy-spray-

columns.html

Tubing Sleeve, 865 µm

(0.034") ID x 1/16"

O.D., PEEK™, Blue

(IDEX) F233

Sleeve

Return to selection page EASY-nLC II

Page 17: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

17

EASY-nLC II with EASY-Spray Column

Schematic

Item Image P/N

A/B mixing & venting

TeeSC901

EASY-Spray column

https://www.thermoscie

ntific.com/en/about-

us/videos/thermo-

scientific-easy-spray-

columns.html

Tubing Sleeve, 865

µm (0.034") ID x

1/16" O.D., PEEK™,

Blue

(IDEX) F233

Consumables

Sleeve

Return to selection page EASY-nLC II

Page 18: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

18

Consumables

Item Image P/N

HPLC Liquid Junction

Cross 1/32”+ Beige

Sleeves

ES257

MicroTight® Union

Assembly 1/32"G10-0035

Sleeves for connecting

360 µm O.D. capillary to

UnionsSC603*

Silica Emitter

FS360-20-10-N-

20

(New Objective)

Schematic

Analy

tical

Colu

mn

Pre

-

Colu

mn

HV

Waste In Line from LC

1/32” O.D.

Column Out to LC

1/32” O.D.Liquid Junction Cross

PEEK

Union

PEEK

Union

Silica Emitter

* ****

EASY-nLC II with Liquid Junction, Pre-column, Analytical Column and Silica Emitter

Return to selection page EASY-nLC II

Page 19: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

19

Consumables

Item Image P/N

HPLC Liquid Junction

Cross 1/32”+ Beige

Sleeves

ES257

MicroTight® Union

Assembly 1/32"

G10-0035

Sleeves for

connecting 360 µm

O.D. capillary to

Unions

SC603*

Schematic

Packed

Emitter

Pre

-

Colu

mn

HV

Waste In from LC

1/32” O.D.

Column Out to LC

1/32” O.D.

Liquid Junction Cross

PEEK

Union

* **

EASY-nLC II with Liquid Junction, Pre-column and Packed Emitter

Return to selection page EASY-nLC II

Page 20: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

20

Consumables

Item Image P/N

HPLC Liquid Junction

Cross 1/32”+ Beige

Sleeves

ES257

MicroTight® Union

Assembly 1/32"G10--0035

Sleeves for connecting

360 µm O.D.capillary

to UnionsSC603*

Silica Emitter FS360-20-10-N-20

(New Objective)

Schematic

Analy

tical

Colu

mn

HV

Waste In from LC

1/32” O.D.

Liquid Junction Cross

PEEK

Union

Silica EmitterColumn Out to LC

1/32” O.D.

***

EASY-nLC II with Liquid Junction, Analytical Column and Silica Emitter

Return to selection page EASY-nLC II

Page 21: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

21

EASY-nLC II with Liquid Junction and Packed Emitter

Consumables

Item Image P/N

HPLC Liquid Junction

Cross 1/32”+ Beige

SleevesES257

Sleeves for connecting

360 µm O.D. Capillary

to UnionSC603*

HPLC Schematic

HV

Waste In from LC

1/32” O.D.

Packed Emitter

Column Out to LC

1/32” O.D.Liquid Junction Cross

*

Return to selection page EASY-nLC II

Page 22: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

22

Consumables

Item Image P/N

MicroTight® Union

Assembly 1/32"G10--0035

Sleeves for connecting

360 µm O.D. capillary

to unionsSC603*

Venting Tee +

Beige SleevesSC601

Metal Emitter ES542

Schematic

* Analy

tical

Colu

mn

Pre

-

Colu

mn

Waste In from LC

1/32” O.D.Column Out to LC

1/32” O.D. Venting Tee

PEEK

Union

PEEK

Union

Metal Emitter

****

EASY-nLC II with Pre-column, Analytical Column and Metal Emitter

Return to selection page EASY-nLC II

Page 23: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

23

Consumables

Item Image P/N

MicroTight® Union

Assembly 1/32"G10-0035

Sleeves for

connecting 360 µm

O.D. capillary to

unions

SC603*

Venting Tee +

Beige SleevesSC601

Metal Emitter ES542

Schematic

Analy

tical

Colu

mn

Waste In from LC

1/32” O.D.

Venting

Tee

PEEK

Union

Metal EmitterColumn Out to LC

1/32” O.D.

***

EASY-nLC II with Analytical Column and Metal Emitter

Return to selection page EASY-nLC II

Page 24: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

24

RSLCnano with Pre-column and EASY-Spray Column

Schematic Item Image P/N

UltiMate 3000

RSLCnano EASY-Spray

Connection Kit

See Slide 36 6720.0395

HPLC-to-column

connector SC900

Acclaim PepMap

cartridge

+

µ-Precolumn holder

160454

+

164649

EASY-Spray column

https://www.thermosci

entific.com/en/about-

us/videos/thermo-

scientific-easy-spray-

columns.html

Consumables

4

5

3

0

7

1

6

8

9

2 1

BA

A BC

Trap

WPS3000

Autosampler

HPLC-to-column

connector

UltiMate 3000 RSLCnano EASY-Spray Connection Kit

Return to selection page RSLCnano

Page 25: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

25

RSLCnano with EASY-Spray Column

Schematic

Item Image P/N

UltiMate 3000

RSLCnano EASY-

Spray Connection Kit

See Slide 36 6720.0395

HPLC-to-column

connector SC900

EASY-Spray column

https://www.thermoscie

ntific.com/en/about-

us/videos/thermo-

scientific-easy-spray-

columns.html

Consumables

UltiMate 3000 RSLCnano EASY-Spray Connection KitReturn to selection page RSLCnano

Page 26: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

26

Item Image P/N

UltiMate 3000 RSLCnano

Pre-concentration nano LC

kit

Contents Slide 376720.0310

MicroTight® Union 1/40”* 6720.0074*

Sleeves for connecting

O.D. 280µm to to beige

MicroTight® Union

6720.0075

Sleeves for connecting 360

µm capillary to beige

MicroTight® Union

6720.0076

Item Image P/N

HPLC Liquid Junction

Tee + Biege SleevesES258

MicroTight® Union

Assembly 1/32" G10-0035

Beige sleeves for 360

µm O.D. capillarySC603

Silica Emitter

FS360-20-10-N-20-

C12

(New Objective)

*Only use if transfer capillary from the analytical column does not reach the liquid junction teeŧ Fused silica capillary with 280 µm O.D. Return to selection page RSLCnano

20 µm ID

Capillary

RSLCnano with Liquid Junction, Pre-column, Heated Analytical Column and Silica Emitter

Page 27: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

27

Item Image P/N

UltiMate 3000

RSLCnano Pre-

concentration nano

LC kit

Contents Slide 376720.0310

Column Out Tubing*

Viper on LC side

only* 6041.5290*

UHPLC Liquid

Junction Cross KitES269

Item Image P/N

UHPLC Blind Plug (IDEX) P-116

MicroTight® Union

Assembly 1/32" G10-0035

Beige sleeves for

360 µm O.D.

capillarySC603

Silica EmitterFS360-20-10-N-20

(New Objective)

*For non-Viper Column Connections Return to selection page RSLCnano

Beige sleeve

RSLCnano with Liquid Junction, Pre-column, Room Temperature Analytical Column and Silica Emitter

Page 28: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

28

Item Image P/N

UltiMate 3000 RSLCnano

Pre-concentration nano LC

kit

Contents Slide 37 6720.0310

Column Out Tubing*

Viper on LC side

only* 6041.5290*

UHPLC Liquid Junction

Cross KitES269

Item Image P/N

UHPLC Blind Plug (IDEX) P-116

MicroTight® Union

Assembly 1/32"G10-0035

*For non-Viper Column Connections Return to selection page RSLCnano

RSLCnano with Liquid Junction, Pre-column and Packed Emitter

Page 29: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

29

RSLCnano with Liquid Junction, Heated Analytical Column and Silica Emitter

Item Image P/N

HPLC Liquid

Junction Tee + Biege

Sleeves

ES258

MicroTight® Union

Assembly 1/32"G10-0035

Beige sleeves for

O.D. 360 µm

capillary

SC603

Silica Emitter

FS360-20-10-N-20-

C12

(New Objective)

Item Image P/N

UltiMate 3000 RSLCnano

Direct Injection nano LC

kit

Contents Slide 38 6720.0300

MicroTight® Union 1/40” * 6720.0074*

Sleeves for connecting

O.D. 280 µm capillary to

beige MicroTight® Union

6720.0075

Sleeves for connecting

O.D. 360 µm capillary to

beige MicroTight® Union

6720.0076

Return to selection page RSLCnano

20 µm ID

*Only use if transfer capilllaryfrom the analytical column does not reach the liquid junction teeŧFused silica capillary with 280 µm O.D.

Page 30: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

30

Item Image P/N

UHPLC Blind Plug (IDEX) P-116

MicroTight® Union

Assembly 1/32" G10-0035

Beige sleeves for

360 µm O.D.

capillary

SC603

Silica EmitterFS360-20-10-N-20

(New Objective)

RSLCnano with Liquid Junction, Room Temperature, Analytical Column and Silica Emitter

Item Image P/N

UltiMate 3000

RSLCnano Direct

Injection nano LC kit

Contents Slide 386720.0300

Column Out Tubing*Viper on LC side

only*6041.5290*

UHPLC Liquid

Junction Cross KitES269

*For non-Viper Column Connections Return to selection page RSLCnano

Beige sleeve

Page 31: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

31

Item Image P/N

UltiMate 3000

RSLCnano Direct

Injection nano LC kit

Contents Slide 386720.0300

Column Out Tubing

Viper on LC side

only 6041.5290*

UHPLC Liquid

Junction Cross KitES269

RSLCnano with Liquid Junction and Packed Emitter

Item Image P/N

UHPLC Blind Plug (IDEX) P-116

MicroTight® Union

Assembly 1/32" G10-0035

Return to selection page RSLCnano

Page 32: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

32*Only use if transfer capillary from the analytical column does not reach the liquid junction teeŧFused silica capillary with 280 µm O.D.

Item Image P/N

UltiMate 3000 RSLCnano

Pre-concentration nano LC

kit

Contents Slide 37 6720.0310

MicroTight® Union 1/40” *6720.0074*

Sleeves for connecting

O.D. 280 µm capillary to

beige MicroTight® Union6720.0075

Sleeves for connecting

360 µm capillary to beige

MicroTight® Union6720.0076

Item Image P/N

MicroTight® Union

Assembly 1/32"G10-0035

Beige sleeves for

connecting O.D 360 µm

capillary to Microtight

Unions

SC603

Metal Emitter E542

Return to selection page RSLCnano

20 µm ID

RSLCnano with Pre-column, Heated Analytical Column and Metal Emitter

Page 33: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

33

Item Image P/N

UltiMate 3000 RSLCnano Pre-

concentration nano LC kit Contents Slide 37 6720.0310

Column Out Tubing*Viper on LC side

only*6041.5290*

MicroTight® Union 1/40" 6720.0074

Sleeves for connecting O.D.

280 µm capillary to beige

MicroTight® Union6720.0075

Sleeves for connecting O.D.

360 µm capillary to beige

MicroTight® Union6720.0076

Item Image P/N

MicroTight® Union Assembly

1/32"G10-0035

Beige sleeves for connecting

O.D. 360 µm capillary to

Microtight Union

SC603

Metal Emitter ES542

*For non-Viper Column Connections

Return to selection page RSLCnano

RSLCnano with Pre-column, Room Temperature Analytical Column and Metal Emitter

Page 34: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

34*Only use if transfer capillary from the analytical column does not reach the liquid junction teeŧFused silica capillary with 280 µm O.D.

RSLCnano with Heated Analytical Column and Metal Emitter

Item Image P/N

MicroTight® Union

Assembly 1/32"G10-0035

Sleeve for connecting

O.D 360 µm capillary

to MicroTight® UnionSC603

Metal Emitter ES542

Item Image P/N

UltiMate 3000 RSLCnano

Direct Injection nano LC kit

Contents Slide 386720.0300

MicroTight® Union* 6720.0074*

Sleeves for connecting O.D.

280 µm capillary to beige

MicroTight® Union

6720.0075

Sleeves for connecting O.D.

360 µm capillary to beige

MicroTight® Union

6720.0076

Return to selection page RSLCnano

20 µm ID

Page 35: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

35

RSLCnano with Room Temperature Analytical Column and Metal Emitter

Item Image P/N

MicroTight® Unions

Assembly 1/32"G10-0035

Sleeve for connecting

O.D 360 µm capillary

to MicroTight® Union

SC603

Metal Emitter ES542

Item Image P/N

UltiMate 3000 RSLCnano

Direct Injection nano LC kitContents Slide 38 6720.0300

Column Out Tubing* Viper on LC side only 6041.5290*

MicroTight® Union 1/40" 6720.0074

Sleeves for connecting O.D.

280 µm capillary to beige

MicroTight® Union

6720.0075

Sleeves for connecting O.D.

360 µm capillary to beige

MicroTight® Union

6720.0076*For non-Viper Column Connections

Return to selection page RSLCnano

Page 36: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

36

UltiMate 3000 RSLCnano EASY-Spray Connection Kit

UltiMate 3000 RSLCnano EASY-Spray connection kit 6720.0395

Item Replacement P/N

300 µm I.D. x 5 mm, packed with Acclaim PepMap100 C18, 5 µm, 100Å (set of 5 cartridges)* 160454*

µ-Precolumn holder, 5 mm, with 30 µm I.D. connecting tubing, nanoViper fittings* 164649*

nanoViper Capillary FS/PEEK sheathed 1/32" I.D. x L 20 µm x 350 mm 6041.5240

nanoViper Capillary FS/PEEK sheathed 1/32" I.D. x L 20 µm x 550 mm 6041.5260

nanoViper Capillary FS/PEEK sheathed 1/32" I.D. x L 20 µm x 650 mm 6041.5275

nanoViper Capillary FS/PEEK sheathed 1/32" I.D. x L 20 µm x 750 mm 6041.5280

nanoViper Capillary FS/PEEK sheathed 1/32" I.D. x L 75 µm x 550 mm 6041.5760

nanoViper Capillary FS/PEEK sheathed 1/32" I.D. x L 75 µm x 650 mm 6041.5775

nanoViper Sample Loop 20 µL, FS/PEEK sheathed 6826.2420

Union Viper 6040.2304

PTFE tubing, 500 µm I.D. x 100 cm, used as waste tubing 6720.0077

1/16" Universal Fingertight Fitting, one-piece design, extra long thread, 4 pieces 6720.0015

Polypropylene vials for WPS with glass insert, 250 µL, 25 pieces 6820.0027

Polypropylene caps for WPS vials, 25 pieces 6820.0028

Cytochrome C digest, 1.6 nmol, Lyophilized 161089

*For Pre-concentration Set Up Only

Return to selection page UltiMate 3000 RSLCnano

Page 37: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

37

UltiMate 3000 RSLCnano Pre-concentration nano LC Kit

Return to selection page UltiMate 3000 RSLCnano

UltiMate 3000 RSLCnano Pre-concentration nano LC Kit 6720.0310

Item Replacement P/N

75 μm I.D. x 15 cm, packed with Acclaim PepMap RSLC C18, 2 μm, 100Å, nanoViper 164534

300 µm I.D. x 5 mm, packed with Acclaim PepMap100 C18, 5 µm, 100Å (set of 5 cartridges)* 160454

μ-Precolumn holder, 5 mm, with 30 μm I.D. connecting tubing, nanoViper fittings 164649

nanoViper capillary FS/PEEK sheathed 1/32" I.D. x L 20 μm x 350 mm 6041.5240

nanoViper Capillary FS/PEEK sheathed 1/32" I.D. x L 75 µm x 650 mm 6041.5775

nanoViper Capillary FS/PEEK sheathed 1/32" I.D. x L 75 µm x 550 mm 6041.5760

nanoViper Capillary FS/PEEK sheathed 1/32" I.D. x L 20 µm x 750 mm 6041.5280

nanoViper Sample Loop 20 µL, FS/PEEK sheathed 6826.2420

PTFE tubing, 500 µm I.D. x 100 cm, used as waste tubing 6720.0077

1/16" Universal Finger tight Fitting, one-piece design, extra long thread, 4 pieces 6720.0015

Polypropylene vials for WPS with glass insert, 250 µL, 25 pieces 6820.0027

Polypropylene caps for WPS vials, 25 pieces 6820.0028

Cytochrome C digest, 1.6 nmol, Lyophilized 161089

Page 38: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

38

UltiMate 3000 RSLCnano Direct Injection nano LC Kit

Return to selection page UltiMate 3000 RSLCnano

UltiMate 3000 RSLCnano Direct Injection nano LC Kit 6720.0300

Item Replacement P/N

75 μm I.D. x 15 cm, packed with Acclaim PepMap RSLC C18, 2 μm, 100Å, nanoViper 164534

nanoViper Capillary FS/PEEK sheathed 1/32" I.D. x L 20 µm x 750 mm 6041.5280

nanoViper Capillary FS/PEEK sheathed 1/32" I.D. x L 75 µm x 550 mm 6041.5760

nanoViper sample loop 1 μL, FS/PEEK sheathed I.D. x L 100 μm x 127 mm 6826.2401

Polypropylene vials for WPS with glass insert, 250 µL, 25 pieces 6820.0027

Polypropylene caps for WPS vials, 25 pieces 6820.0028

Cytochrome C digest, 1.6 nmol, Lyophilized 161089

For the details of comprehensive applications on the RSLCnano, go to :

http://www.dionex.com/en-us/webdocs/87961-Man-LC-U3000-RSLCnano-

StdApplications-Nov12-4820-4103-V2.pdf

Page 39: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

39

• Making Viper Connections — Slide 40

• 1000 vs 1200 nanoViper Capillaries — Slide 41

• Making Connections with Sleeves— Slide 42

• Limit Pressure on EASY-nLC Systems — Slide 43

• Limit Pressure on RSLCnano — Slide 44

• How frequently should I replace my Unions and Sleeves? —

Slide 45

• Know your Column and Dead Volumes — Slide 46

‘How to’ Guideline

Page 40: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

40

• Carefully tighten the nut fingertight using the black knurled nut

• Do not overtighten – Maximum of 1/8 turn after fingertight

• Remove the black knurled nut when tightened / after installation

Making nanoViper and Viper Connections

nanoViper fitting and capillary

Return to how to guide

Page 41: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

41

• NanoViper capillaries capable of withstanding pressures up to 1200 bar are

coated with blue colored PEEK tubing to distinguish them from the 1000 bar

(beige) capillaries

• All packaging containing 1200 bar compatible nanoViper fittings are marked with

a blue sticker

• ONLY 1200 bar compatible nanoViper capillaries should be used with the

EASY-nLC 1200 system

1000 vs 1200 bar nanoViper Capillaries

Capillaries with1000 and 1200 bar nanoViper fittings

the color code indicating the tubing inner diameter is unchanged (brown)

Return to how to guide

Packaging label for boxes

containing 1200 bar nanoViper

fittings

Page 42: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

42

• Insert the PEEK sleeve with the stainless steel nut (standard) or PEEK nut

(biocompatible system) and the appropriate ferrule in a port (or the preassembly tool,

when working on a biocompatible system!).

• Push the sleeve all the way into the port. It is essential for a zero dead volume

connection that the assembly seats firmly.

• Tighten the nut by two or three turns to make certain that the ferrule grabs the sleeve.

• Remove the pre-assembled fitting, and then slide the capillary (or column) into the

sleeve.

• When re-installing the fitting together with the capillary (or column), make certain that

the tip of the tubing does not extend the tip of the sleeve. Tighten the nut fingertight.

• Push the capillary (column) all the way into the sleeve (port) to minimize dead volume.

• Finally tighten the connection sufficiently to hold the pressure. It is essential for a zero

dead volume connection that the assembly seats firmly, also under pressure.

Making Connections With Sleevese.g. fused silica on a nano column

Return to how to guide

Page 43: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

43

To limit the EASY-nLC 1200/1000 to 300 bars when running with a

column setup rated to max 300 bar please change the Max pressure

setting to 300 bar in:

• Method Editor: for Sample loading and Analytical and Pre-column

equilibration

• Scripts: for Analytical and Pre-column equilibration

• Choose only flows for gradient, isocratic flow and idle flow that will

create less than 300 bar on your column setup.

Limiting Pressure on EASY-nLC Systems

Return to how to guide

Page 44: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

44

• The RSLCnano has an upper and lower

pressure limit

• The pressure limit can be set in each instrument

method

• NC_Pump icon on the flow tab

• or directly on the control panel, using the sliders

Limiting the Pressure on RSLCnano systems

Upper limit

Lower limit

Return to how to guide

Page 45: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

45

Item Image P/N On Hand When to replace

MicroTight® Union Assembly 1/32" G10-0035 10 No more than two connections

MicroTight® Union 1/40" 6720.0074 10 No more than two connections

Sleeves for connecting O.D 280 µm

capillary to MicroTight® Union

Assembly 1/32"

SC903 20Every time you make a new

connection

Sleeves for connecting O.D 360 µm

capillary to MicroTight® Union

Assembly 1/32"

SC603 20Every time you make a new

connection

Sleeves for connecting O.D 280 µm

Capillary to beige MicroTight® Union6720.0075 10

Every time you make a new

connection

Sleeves for connecting O.D 360 µm

Capillary to beige MicroTight® Union6720.0076 10

Every time you make a new

connection

Column Out Tubing

Waste In Tubing

Viper on LC side only

Viper on LC side only

6041.5290

6041.5289

2

2

Whenever viper is damaged, silica is

too short, or line is clogged

Column Out Flow Line

Waste In Flow LineColumn Waste

LC560

LC562

1

1

When Viper is damaged or line is

clogged

HPLC-to-column connector SC900 2Good to have on hand for EASY-nLC

Leak Tests

UltiMate 3000

RSLCnano EASY-Spray Connection

Kit

Contents Slide 36 6720.0395 1 When tubing clogs or column fails

UltiMate 3000 RSLCnano Pre-

concentration nano LC kit Contents Slide 37 6720.0310 1 When tubing clogs or column fails

Ultimate 3000 RSLCnano Direct

Injection nano LC kit Contents Slide 38 6720.0300 1 When tubing clogs or column fails

How Frequently Should I Replace My Unions and Sleeves?

Return to how to guide

Page 46: The Complete and Easy Guide to Configuring your Thermo ......Slide 26 Room Temp 27 Pre-Col + Packed Emitter 28 Column + Emitter 29 Room 30 Packed Emitter 31 HV on Emitter Pre-Col +

46

Know Your Column Dead Volumes

Note: at least 5x column volume of mobile phase flow are

suggested to equilibrate the column

Return to how to guide