improvement of ash (douglas) - uni- · pdf file• hybridisation frequency ... somatic...
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Genetic improvement of ash ( Fraxinus excelsior ) – a European project
RAP : Realising Ash’s Potential
Dr. Gerry Douglas
Teagasc, Agriculture and Food Development AuthorityKinsealy Research Centre,
Malahide Rd. Dublin 17, Ireland
Utilisationstrategies
Propagation technology
Biodiversity assays
3 Workpackages
OVERALL OBJECTIVES:
1. To characterise the genetic diversity on regional & European scale
2. To accelerate the utilisation of scarce selections by vegetative propagation and induced flowering
3. To identify effective ways to exploit & use results & materials
Dr. Gerry Douglas Teagasc, IRELAND Coordinator …[email protected]
Dr. Jean Dufour INRA ……………………………… [email protected]
Dr. A. Meier Dinkel NFVA GERMANY............ [email protected]
Dr. D. Thompson Coillte Teo., IRELAND………. [email protected]
Dr. J. Hubert Forest Research, UK…………… [email protected]
Dr. N.Frascaria-Lacoste , ENGREF, France……. [email protected]
Dr. B. Heinze FFRC, AUSTRIA,............................. [email protected]
Dr J.F. Hausman CRP-GL, LUXEMBOURG.......... [email protected]
Mr. L. Somer Vitroform , Denmark……………………[email protected]
Dr. M. Capuana IMGPF CNR , ITALY..................... [email protected]
Mr. B. De Cuyper INBO, [email protected]
Ms. K. Russell EMR, UK …………………………[email protected]
Dr. P. Mertens MRW BELGIUM………………. [email protected]
Dr. Andreas Ottitsch EFI, FINLAND…………….. [email protected]
Contracting partners & contacts
WP 1: Biodiversity assays
Growth & adaptationanalyses
• Populations• Provenance trials• (10-15 yr old)• Families
• Molecular analyses• Genetic diversity• Gene flow• Hybridisation frequency
New International Ash
provenance trial
New International Ash
provenance trial
Evaluation of existing provenancetrials of ash Fraxinus excelsior
Biodiversity assays
EVALUATION OF 52 ASH PROVENANCES
(D Jacques, Gembloux B.)
Genotypic Heritability
Character
Significance
Site 1
Site 2
Height &
Circumference
**
0.48
0.76
Stem & Crown Form
**
0.68
0.52
Forking
NS
-
-
Frost Damage
**
0.60
0.72
Game Damage
NS
-
-
Global analysis of provenance trials ( 3 countries 50 provenances each in common France Belgium Germany)
Coefficient of variation as a % of the provenances, site and interaction effects( P. Mertens Gembloux)
26.928.544.1Residual19.924.329.0Interaction17.824.427.5Site6.43.75.7Provenance
Stemform
Stemheight
Stem girth
Coef. Varn.%
1. Site and Interaction effects > provenance effect.
2. Stem form has a relatively higher provenance effect relative to site and interaction effects.** Efficiency of provenance selection is not yet demonstrated.
3. Progeny selection is not more useful than Provenance selection
• Summary resultsHeritability values for ash:
Very high for----Susceptibility to frost-- bud flushing date
(At the level of country, provenance and progeny)
High for------ Stem straightness------- Height and circumference
Global analysis of existing trials
----Very strong site effects and interaction effects
--- stemform a good selection criterion
Much intra population variation– clonal selection
New European Provenance Trial
Biodiversity assays
• 600 Seedlots collected & germinated from 44 EU provenances
• Testing 30 provenances “ core collection” in 6 countries
-- Material already planted in France. Germany Belgium, Italy, Ireland& Denmark
Ash provenences in the new European trial
Nursery flushing of 40 provenances on seven European sites, (F, D, IRL, UK, IT, B)– first results
( B. De Cuyper)
EarlyLate
Lt(Kaisiadorys)
F (Sila Grande)
LT + F
IntermediateB, F, DCentral
Early (Stable)I, CZSouth + East
Late (Stable)IRL, UK, DK, LT
North and Western
Flushing Pattern
Countrysource
Provenance
Chloroplast DNA markers ( maternal inheritance) ( sequenced variable regions )
• atpB-rbc• Mat-K
Measuring genetic variation of ash
Molecular Nuclear DNA markers
Microsatellites ( five variable loci)• FEMSATL 11, 9, 4, 16, M2- 30
• AFLPs
• Analysis of provenances, populations, clonal material
Biodiversity assays
Genetic Diversity estimates• High – for intra population diversity• heterozygote deficiency
Gene flow estimates are • 42-56 % of pollen from outside 12ha stand• Gene flow ( seed & pollen flow within stands is restricted )
Biodiversity : Molecular analyses : Some results( N. Frascaria Lacoste, B. Heinze, J. Fernandez, G. Douglas)
Seed orchard trees
14 Provenances
Natural populations
Genetic variation of Ash in IrelandM. HarbourneT. HodkinsonG. Douglas
Allele number and overall gene diversity in Irish ash using nuclear microsatellites
0.881410.871800.82337
0.93280.90340.8874FEMSATL 19
0.66110.71150.6952FEMSATL 16
0.91240.89340.7860FEMSATL 11
0.95320.9380.8772FEMSATL 4
0.98460.94590.8979M2-30
Gene diversityHT
No. Alleles
Gene diversityHT
No. Alleles
Gene diversityHT
No. Alleles
Ms- Locus
Seed orchardNatural populations 3
n=50 / pop
Provenances14
n=6 / provenance
--intra population diversity --- high
--genetic differentiation between strands-- low.
-- significant heterozygote deficiency
Gene diversity
France : 0.52-0.81Bulgaria 0.57- 0.92
Allele number in chloroplast microsatellite regions (haplotypes)
in Fraxinus excelsior from Ireland & Europe.
N = number of alleles / haplotypes detectedHT = is the gene diversity (Nei, 1973). Most variation within provenances ( 79- 63%)14 Irish provenances;Europe from B, Cz. Rep., Dk,UK (S), UK, F, D, L., Poland, Spain.
0.81260.7114Multilocus Haplotype
0.51120.6812352-370T4ACTATCT9-11
&GCGC3-4A5-6
CPFRAX6
0.6950.324252-257T4ACTATCT9-11CPFRAX5
0.6850.093152-161T9-10AC2T6CPFRAX2
HTNHTNSize rangeSSr - typeCode
EuropeIreland
Distribution map of most
common haplotypes
of Irish ash
from provenancetrial
with new cpDNA markers
Analysis of provenance relationships
Neighbour – joining tree of European
ashfrom AFLP data
Distribution map of Common haplotypes in European ash
Sources of material Selected trees
Propagation technology
Micropropagation
Somatic embryogenesis
Cryopreservation
Cutting propagation
Medium: (mg/L) M9 = MS : BA 5.5; TDZ 0.55, IBA 0.2 QRC = WPM*with 3.0 g/L charcoal.
Culture initiation : 2003• Buds from 55 selected clones• 18 clones viable
(@ 4 subcultures)
Rooting spontaneouslyor induced with auxin
Micropropagation
24 14 35 25 31clone
0
1
2
3
4
5multiplication rate
14/6314/6814/66
Influence of TDZ on the initiation of shoocultures WPM with:14/63: 4mg/l BAP + 0.15mg/l IBA, 14/68: 4mg/l BAP + 0.15mg/l IBA + 0.2mg/l TDZ,14/66: 0.15mg/l IBA + 1mg/l TDZ
Culture establishment is difficult
0
0,5
1
1,5
2
2,5
3
3,5
4
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
Subcultures
Prop
agat
ion
rate
JK49
T70
F5
Micropropagation over time
Somatic embryogenesis ( M. Capuana )
MS medium containing 2,4-D (0.1 mg l-1 ) & BA (1.0 mg l-1 )
30-35 % germination
10- 20 % conversion
Cryopreservation of clones of Fraxinus excelsior
5780519-21
808077-8
758077-3
758077-27
508077-23
536077-7
08077-24
786877-5
717077-2
adult
8070126.103.1
70607-3.3
607016.1.1.
507047.1.1
8070129.6.2
juvenile
regeneration rate [%]
no. of cryopreservedshoot tips
clone
1- week( 1-2 mm)
3- weeks
8- weeks
(A. Meier Dinkel)
Types of cuttings
Apical = Apex + 2 nodes Subapical= 2 nodes
Rooting cuttings of Ash cuttings from seedlings and micropropagated plants:
Cutting propagation ( G. Douglas )
Rooting in cuttings from micropropagated ash
2 wks.
3 months
Rooting: warmbench with plastic
Hedges of stock plants Cuttings
Cuttings collected from the same hedge
April ( dormant )MayJuneJuly
0
20
40
60
80
100
120
72 F5 49 47
Clone
Roo
ting
%May June July
Rooting in cuttings from micropropagatedhedged plants in May June & July
400 rooted / m2
: 4 cutting crops / yr = 1600 rooted / yr / m2
glasshouse of 200 m 2 = 320, 000 rooted ash plants / yr.
1-2 yr growthField planting
Hedges from micropropagation .
Four crops of cuttings per year
Rooted cuttings (85-100%)
Planting broadleaves:
• Farmers survey• Focus group discussions
Utilisationstrategies
Improved broadleaves Field User
Factors of influence ??
(A. Ottitsch, J. Frawley)
Flow of information & materials from research institutesto forestry entrepreneurs – model
Afforestation environment in Ireland• 14 000 ha / yr.• Broadleaf 15-22 %-- target 30%
Grants and Premia
4674951Other 4996729Beech4996348Oak
Euro p.a. /ha Premium (20 yrs)
Total / ha grantEuro
Species
7Other2Beech4Sycamore20Alder21Oak46Ash
%
Species
10060Total1592017Other
106715Environmental effects
1381312Land suitability34203032Aesthetic/amenity28173024Higher subsidies
All %No*
%%
Broadleaf + conifersowners
Broadleafowners
Main influence
Farmer survey : Factors which Influence the
planting of broadleaf species
Landholders survey views: planting improved material ( when available ).
100All
16Not sure
2No, definitely
5No, advantage probably
27Yes, probably
50Advantage definitely
%View on advantages
100100100100100All
3326224253Third level
4551384838Secondary level
222340109Primary only
%%%%%
AllNoneConiferowner
Broadleaf &
conifer owner
Broadleafowner
Highest education
level obtained
Education level of landowners by plantation type.
Revised model -- Strong role for opinion leaders
Thanks to the RAP team&
Thank you for your attentio