disease epidemic and severity of rice blast, rice brown spot and rice narrow brown spot in lower...

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Disease Epidemic and Severity of Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot in Lower Yom Basin Off- season Rice

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Presented in “China – Thailand Geo-Informatics Workshop Series I: Agricultural Applications” 30 June - 2 July 2010 at Pattaya, Thailand

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Page 1: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Disease Epidemic and Severity of Rice Blast,

Rice Brown Spot and Rice Narrow Brown Spot

in Lower Yom Basin Off-season Rice

Using Geo-Informatics

Page 2: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Objectives

-Show the case how to use geo-informatic and space technology to support the research of rice disease epidemic and severity in the Lower Yom Basin

Page 3: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Study Area

Lower Yom Basin

-Covered 2 districts of Phitsanulok province

-Covered 3 districts of Phichit province

-2,000 Sq.Km

Page 4: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Method1. Satellite use LANDSAT 5Supported by GISTDA 6 date beginning from December 2008 - May 2009

Page 5: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

2. Paddy field surveyRice diseases diagnosis and grading disease severity of 3 diseases symptoms - Seedling stage 1 – 30 days- Tillering stage 31-51 days- Flowering Stage 51-80 days- Maturing Stage more than 81 days

3. Recorded the coordinate of sampling plots

Page 6: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

4. Confirmed the diseases causing agents under compond microscope in laboratory

Page 7: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Rice blast symptom

Caused of Biporalis oryzae

and Curvularia lunata)

Page 8: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Rice brown spot symptom

(Biporalis oryzae)

Page 9: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Rice Narrow Brown Spot caused of

Cercospora

oryzae

Page 10: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

-The difference growth stages of rice had been used for paddy field area classification.

- Multispectral from the LANDSAT in 7 periods

Start from November 2008 until May 2009

Page 11: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

The raw data from the LANDSAT had been adjusted the intensity of band 3 and band 4 with linear equations. For provide the valuable information on the intensity between 0 - 255.

Page 12: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Multispectral from the

LANDSAT in 7 periods

Lower Yom Basin9th

December 2008

Page 13: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

10th January 2009

Page 14: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

26th January 2009

Page 15: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

11st February 2009

Page 16: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

27th February 2009

Page 17: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

16th April 2009

Page 18: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

18th May 2009

Page 19: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

multispectral data from LANDSAT in each date had been using for create

DVI = (B4-B3) (B4+B3)

Page 20: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

DVI on Lower Yom Basin

9th December 2008

Page 21: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

DVI on Lower Yom Basin

10th January 2009

Page 22: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

DVI on Lower Yom Basin

26th January 2009

Page 23: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

DVI on Lower Yom Basin

11th February 2009

Page 24: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

DVI on Lower Yom Basin

27th February 2009

Page 25: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

DVI on Lower Yom Basin

16th April 2009

Page 26: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

DVI on Lower Yom Basin

16th May 2009

Page 27: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Step 1 : Classified data from DVI in Multi Date (3 dates) Supervised classification into 5 classes

Class 1 = Bared soil Class 2 = Seedling Stage

Class 3 = Tillering Stage Class 4 =Maturing Stage

Class 5 = Haversting Stage

Step 2 : Intersect paddy field frame which derived from Land Development Department

Page 28: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Step 3 : Calculation paddy field area in each growth stageSeedling

Stage

Page 29: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Tillering Stage

January 2009

Page 30: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Maturing Stage or

Flowering Stage

February 2009

Page 31: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Harvesting Stage

March 2009

Page 32: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Preparation Stage

April 2009

Page 33: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Seedling Stage

May 2009

Page 34: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

0

10

20

30

40

50

60

Dec2551 Jan2552 Feb2552 Mar2552 Apr2552 May2552

Baresoil

seeding

tillering

maturing

harvesting

Percentage of area under off-season rice growth stages .

Page 35: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Days after planting

%DVI

% DVI = -0.0222X2 + 2.5325X - 15.178 ; R2 = 0.809 Tillerin

g Stage

57 days

Page 36: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

1) Equation for Calculate

Age of Rice on Seedling Stage and Tillering Stage

= 57 – (3138.002 –( %DVI*45.0451)) ½

2) Equation for Calculate Age of Rice on Maturing Stage and Harvesting Stage

= 57 + (3138.002 –( %DVI*45.0451)) ½

Equation for Calculation Growth Stage of Rice

Page 37: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

- Off season rice data had been collected from December 2008 until May 2009.

- Linear Correlation (r) between Planting Date and Age of Rice Planting Date (on 1st November until 31st May is the timing to begin palnting off season) Age of rice (beginning from sowing day or planting day until harvesting day)

Page 38: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Dbl = Rice Blast DiseaseDs = Rice Brown Spot

Dst = Rice Narrow Brown Spot or Streak

Page 39: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Dbl = -.027PlantD + 0.044Age + 7.40 ; R2= .150, F= 44.536 Sig.= 0.000

(t= -5.467) (t=-5.467) (t=9.432)

Equation for calculated plant disease severity

Ds = .039PlantD + .068Age - 1.075 ; R2= .101, F= 28.384 Sig.= 0.000 (t= 6.930) (t= 5.781) (t= -1.182)

Dst = .024PlantD + .039Age - 1.938 ; R2= .382, F= 156.343 Sig.= 0.000 (t= 16.580) (t= 13.005) (t= -8.384)

Page 40: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

DVIStage R

Stage R

DBL Dec09

Page 41: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

showed ≤ 10% = 66.99%

December 2008

showed ≤ 15% = 33.02%

Rice Blast Disease Severity

Page 42: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

January 2009

showed ≤ 10% = 93.69%

Rice Blast Disease Severity

Page 43: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

showed ≤ 15% = 31.91%

February 2009

showed ≤ 10% = 46.78%

Rice Blast Disease Severityshowed ≤ 5% = 26.70%

Page 44: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Rice Blast Disease Severity

showed ≤ 15% = 47.85%

showed ≤ 10% = 20.24%

March 2009

showed ≤ 5% = 20.24%

Page 45: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

April 2009

showed ≤ 15% = 15.88%

showed ≤ 10% = 34.93%

showed ≤ 5% = 49.18%

Rice Blast Disease Severity

Page 46: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

May 2009

showed ≤ 15% = 3.84%

showed ≤ 10% = 13.89%

showed ≤ 5% = 82.27%

Rice Blast Disease Severity

Page 47: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

February 2009

showed ≤ 10% = 14.66%

showed ≤ 5% = 82.54%

Rice Brown Spot Disease

Severityshowed no symptom = 2.80%

Page 48: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

March 2009

showed ≤ 10% = 70.96%

showed ≤ 5% = 29.04%

Rice Brown Spot Disease

Severity

Page 49: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

April 2009

showed ≤ 10% = 95.54%

showed no symptom = 6.46%

Rice Brown Spot Disease

Severity

Page 50: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

May 2009

Rice Brown Spot Disease

Severity

showed ≤ 10% = 96.31%

showed no symptom = 3.69%

Page 51: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Rice Narrow Brown Spot

Disease Severity

showed ≤ 5% = 58.16%

February 2009

showed no symptom =41.81%

Page 52: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

March 2009

showed no symptom = 14.84%showed ≤ 5% = 85.66%

Rice Narrow Brown Spot

Disease Severity

Page 53: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

showed ≤ 5% = 100%

April 2009

Rice Narrow Brown Spot

Disease Severity

Page 54: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Rice Narrow Brown Spot Severity showed ≤ 5% = 100%

May 2009

Page 55: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Conclusion

Rice blast disease severity was decreased from January to May. Off-season rice growing area showed moderately disease severity in 33.02 of planting area. But showed low disease severity in 82.27% of planting area.

Page 56: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

- Rice brown spot symptom was not found on December and January. But rice brown spot disease was increasing in infection area on February until May, in the low level of disease severity.

- Rice narrow brown spot symptom was not found on December and January. But rice narrow brown spot disease was increasing in infection area on February until May, in the low level of disease severity

Page 57: Disease Epidemic and Severity of  Rice Blast, Rice Brown Spot and Rice Narrow Brown Spot  in Lower Yom Basin Off-season Rice  Using  Geo-Informatics

Acknowledgement

- GISTDA for research financial and satellite data support.

- Assist. Prof. Vicharn Amarakul for GIS analysis