chromatograms for summed and individual 15 transitions of 6 patient samples

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Chromatograms for summed and individual 15 transitions of 6 patient samples

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Chromatograms for summed and individual 15 transitions of 6 patient samples. CSF 845 (all transitions). CSF 845 (915.19 @hcd17.00 ). CSF 845 ( 943.21 @hcd17.00 ). CSF 845 ( 975.98 @hcd17.00 ). CSF 845 (1000.74 @hcd17.00 ). CSF 845 ( 1029.51 @hcd17.00 ). CSF 845 ( 1054.03 @hcd17.00 ). - PowerPoint PPT Presentation

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Page 1: Chromatograms for summed and individual 15 transitions of 6 patient samples

Chromatograms for summed and individual 15 transitions of 6

patient samples

Page 2: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 (all transitions)d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 0.00 - 12.01 SM: 3G

0 1 2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

7.69

7.826.506.145.55 7.997.00 8.70 10.545.24 9.553.83 11.87

NL: 3.97E5m/z= 914.94-915.44+942.96-943.46+975.73-976.23+1000.49-1000.99+1029.26-1029.76+1053.78-1054.28+1078.54-1079.04+1106.81-1107.31+1162.98-1163.48+1200.00-1200.50+1257.04-1257.54+1300.71-1301.21+1333.41-1333.91+1371.75-1372.25+1404.77-1405.27 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 3: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

8.90

NL: 1.49E4m/z= 914.94-915.44 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 4: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

6.37

6.34

6.20 7.945.71 11.32

NL: 2.64E4m/z= 942.96-943.46 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 5: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.37

6.41

8.407.88

NL: 2.48E4m/z= 975.73-976.23 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 6: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

6.35

6.25 7.944.06 8.20

NL: 3.32E4m/z= 1000.49-1000.99 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 7: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

7.69

6.38

5.93 7.765.12 9.616.96 9.225.82

NL: 5.91E4m/z= 1029.26-1029.76 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 8: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

7.12 7.877.828.00 9.007.787.094.68 5.82

NL: 7.89E4m/z= 1053.78-1054.28 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 9: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

7.817.848.11

7.78 9.205.55 6.535.49 7.345.873.83 9.758.87

NL: 7.04E4m/z= 1078.54-1079.04 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 10: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

6.35

7.886.47

6.64

6.14 7.00 7.945.55 7.537.23

10.545.24 9.389.558.125.764.65

NL: 2.24E4m/z= 1106.81-1107.31 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 11: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

6.41

7.907.827.24

7.947.76

8.947.00 7.526.32

NL: 1.01E4m/z= 1162.98-1163.48 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 12: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

6.41

8.707.76

6.31 11.87

NL: 2.47E4m/z= 1200.00-1200.50 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 13: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

6.31

7.75

NL: 1.89E4m/z= 1257.04-1257.54 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 14: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.37 6.40

6.29 6.76

NL: 1.49E4m/z= 1300.71-1301.21 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 15: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

6.37

NL: 1.20E4m/z= 1333.41-1333.91 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 16: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

7.59

NL: 8.77E3m/z= 1371.75-1372.25 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 17: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])d:\xcalibur\...\hu_23aug2013_qx31 CSF 845 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:17:02 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

8.22

NL: 1.52E4m/z= 1404.77-1405.27 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx31

Page 18: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 (all transitions)d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 0.00 - 12.01 SM: 3G

0 1 2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

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85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

7.84

7.787.886.686.21 7.69 8.50 8.675.943.83 5.00 9.64 11.5510.603.58

NL: 1.54E5m/z= 914.94-915.44+942.96-943.46+975.73-976.23+1000.49-1000.99+1029.26-1029.76+1053.78-1054.28+1078.54-1079.04+1106.81-1107.31+1162.98-1163.48+1200.00-1200.50+1257.04-1257.54+1300.71-1301.21+1333.41-1333.91+1371.75-1372.25+1404.77-1405.27 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 19: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

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20

25

30

35

40

45

50

55

60

65

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80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

6.37

7.23

NL: 6.53E3m/z= 914.94-915.44 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 20: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

6.37

6.44

11.55

NL: 1.32E4m/z= 942.96-943.46 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 21: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.41

6.34

6.21 11.993.58 5.08

NL: 1.17E4m/z= 975.73-976.23 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 22: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

6.44 7.84

7.996.58 7.46

NL: 1.46E4m/z= 1000.49-1000.99 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 23: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.41

6.38

6.35

7.69

8.50

7.847.11 7.997.47

NL: 2.15E4m/z= 1029.26-1029.76 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 24: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

7.85

7.55 8.197.09

4.67

NL: 3.30E4m/z= 1053.78-1054.28 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 25: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

7.87

7.847.96

7.816.61 7.55 8.096.976.265.17 9.649.47 10.56

NL: 2.87E4m/z= 1078.54-1079.04 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 26: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

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65

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80

85

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100

Rel

ativ

e Ab

unda

nce

6.38

7.84

6.68

6.317.066.21

7.88

7.75

5.94 7.967.295.495.00

8.415.67

NL: 8.11E3m/z= 1106.81-1107.31 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 27: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

7.76

6.40

6.37

6.12

7.79

7.71

8.128.93

NL: 6.12E3m/z= 1162.98-1163.48 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 28: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

7.84

8.67

3.83

NL: 1.04E4m/z= 1200.00-1200.50 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 29: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

7.64

5.83

NL: 7.63E3m/z= 1257.04-1257.54 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 30: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.41

6.35

7.78

7.88

10.60

NL: 5.64E3m/z= 1300.71-1301.21 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 31: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

6.43

NL: 5.78E3m/z= 1333.41-1333.91 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 32: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

6.43

NL: 3.99E3m/z= 1371.75-1372.25 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 33: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])d:\xcalibur\...\hu_23aug2013_qx44 CSF 1332 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:50:36 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38 NL: 6.74E3m/z= 1404.77-1405.27 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx44

Page 34: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 (all transitions)d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 0.00 - 12.01 SM: 3G

0 1 2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

7.827.79 7.966.506.26 7.125.93 8.67 9.283.70 4.62 9.85 10.78

NL: 2.22E5m/z= 914.94-915.44+942.96-943.46+975.73-976.23+1000.49-1000.99+1029.26-1029.76+1053.78-1054.28+1078.54-1079.04+1106.81-1107.31+1162.98-1163.48+1200.00-1200.50+1257.04-1257.54+1300.71-1301.21+1333.41-1333.91+1371.75-1372.25+1404.77-1405.27 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 35: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

6.31

NL: 5.66E3m/z= 914.94-915.44 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 36: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38 NL: 1.72E4m/z= 942.96-943.46 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 37: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

6.35

6.85

NL: 1.22E4m/z= 975.73-976.23 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 38: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38 NL: 2.00E4m/z= 1000.49-1000.99 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 39: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

7.97

9.14

NL: 2.60E4m/z= 1029.26-1029.76 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 40: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

7.82

8.677.857.146.76 9.85

NL: 4.10E4m/z= 1053.78-1054.28 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 41: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

6.37

7.84

7.96

8.08

9.288.236.53 8.465.83 7.767.12

NL: 4.12E4m/z= 1078.54-1079.04 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 42: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

6.50

7.81

6.26

6.647.85

6.687.37

5.93

7.125.71 7.70

7.944.62 8.28 9.99

NL: 1.61E4m/z= 1106.81-1107.31 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 43: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

6.37

7.797.82

8.06

NL: 5.48E3m/z= 1162.98-1163.48 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 44: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.406.37

6.44

6.31

NL: 8.96E3m/z= 1200.00-1200.50 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 45: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

3.70

NL: 1.14E4m/z= 1257.04-1257.54 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 46: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

6.35

9.318.06

NL: 9.88E3m/z= 1300.71-1301.21 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 47: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

6.31

NL: 7.64E3m/z= 1333.41-1333.91 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 48: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40

6.34

10.78

NL: 5.60E3m/z= 1371.75-1372.25 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 49: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])d:\xcalibur\...\hu_23aug2013_qx42 CSF 1502 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:17:43 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.40 NL: 9.60E3m/z= 1404.77-1405.27 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx42

Page 50: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 (all transitions)D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 0.00 - 12.01 SM: 3G

0 1 2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.37

7.827.78 7.906.18 7.756.785.94 8.724.90 11.139.172.55 9.903.97

NL: 2.01E5m/z= 914.94-915.44+942.96-943.46+975.73-976.23+1000.49-1000.99+1029.26-1029.76+1053.78-1054.28+1078.54-1079.04+1106.81-1107.31+1162.98-1163.48+1200.00-1200.50+1257.04-1257.54+1300.71-1301.21+1333.41-1333.91+1371.75-1372.25+1404.77-1405.27 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 51: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

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RT: 6.35 NL: 7.57E3m/z= 914.94-915.44 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS ICIS hu_23aug2013_qx29

Page 52: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

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85

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Rel

ativ

e Ab

unda

nce

6.35

6.412.55

NL: 1.28E4m/z= 942.96-943.46 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 53: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

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6.37

6.34

7.99

6.41

7.203.97 4.09 6.64

NL: 1.02E4m/z= 975.73-976.23 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 54: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

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unda

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6.37

6.34

7.907.846.29 6.46

NL: 1.73E4m/z= 1000.49-1000.99 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 55: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

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e Ab

unda

nce

6.37

6.31

7.937.11 9.17

NL: 3.01E4m/z= 1029.26-1029.76 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 56: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

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6.37

6.29

7.82

7.85

7.886.55 7.78 9.908.46

NL: 3.75E4m/z= 1053.78-1054.28 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 57: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

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6.376.34

7.78

7.90

7.94 8.507.756.585.52 5.73

NL: 3.57E4m/z= 1078.54-1079.04 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 58: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

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45

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6.38

6.35

6.316.49

6.52

6.64

6.18

6.78 7.826.99

5.947.55

7.905.62 8.72

7.265.59

8.145.46

2.68

NL: 9.82E3m/z= 1106.81-1107.31 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 59: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

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45

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55

60

65

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85

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ativ

e Ab

unda

nce

6.37

6.32

4.90

NL: 5.92E3m/z= 1162.98-1163.48 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 60: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

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e Ab

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6.37

7.84

6.43 7.94

NL: 8.63E3m/z= 1200.00-1200.50 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 61: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

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45

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55

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65

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75

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85

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Rel

ativ

e Ab

unda

nce

6.37

6.70

7.88

NL: 9.36E3m/z= 1257.04-1257.54 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 62: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

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Rel

ativ

e Ab

unda

nce

6.35

6.32

6.41

11.13

NL: 9.33E3m/z= 1300.71-1301.21 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 63: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

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35

40

45

50

55

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6.35 NL: 8.08E3m/z= 1333.41-1333.91 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 64: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

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35

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45

50

55

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6.35 NL: 4.98E3m/z= 1371.75-1372.25 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 65: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

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45

50

55

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65

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75

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85

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Rel

ativ

e Ab

unda

nce

6.35

6.31

NL: 7.74E3m/z= 1404.77-1405.27 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx29

Page 66: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (all transitions)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 0.00 - 12.01 SM: 3G

0 1 2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

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95

100

Rel

ativ

e Ab

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nce

6.32

7.82

7.786.49 7.935.525.494.68 9.478.54 9.763.52

NL: 3.23E5m/z= 914.94-915.44+942.96-943.46+975.73-976.23+1000.49-1000.99+1029.26-1029.76+1053.78-1054.28+1078.54-1079.04+1106.81-1107.31+1162.98-1163.48+1200.00-1200.50+1257.04-1257.54+1300.71-1301.21+1333.41-1333.91+1371.75-1372.25+1404.77-1405.27 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 67: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 915.19)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.32

6.29

7.49

NL: 1.32E4m/z= 914.94-915.44 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 68: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 943.21)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.32

6.25

7.717.784.21 6.213.52 6.74

NL: 3.18E4m/z= 942.96-943.46 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 69: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 975.98)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.31

6.34

6.38

8.263.94

NL: 1.51E4m/z= 975.73-976.23 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 70: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1000.74)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.31

7.797.754.68 7.876.184.44

NL: 2.76E4m/z= 1000.49-1000.99 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 71: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1029.51)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.27

6.34

7.877.976.40 7.84

7.06 7.71

NL: 2.88E4m/z= 1029.26-1029.76 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 72: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1054.03)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

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75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.32

6.25

7.81

7.11 7.767.907.14 9.767.08 8.785.49

NL: 7.11E4m/z= 1053.78-1054.28 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 73: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1078.79)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

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75

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85

90

95

100

Rel

ativ

e Ab

unda

nce

6.31

7.82

7.78 7.857.695.59 7.205.52 7.937.08 8.14 9.47

NL: 6.06E4m/z= 1078.54-1079.04 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 74: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1107.06)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.31

6.266.49

6.567.82

6.79

6.93

7.78

6.17 7.09 7.565.52 7.945.565.44 8.94

NL: 1.77E4m/z= 1106.81-1107.31 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 75: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1163.23)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

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45

50

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65

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75

80

85

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ativ

e Ab

unda

nce

6.32

7.816.67

NL: 1.04E4m/z= 1162.98-1163.48 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 76: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1200.25)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.32

7.585.855.06

NL: 1.67E4m/z= 1200.00-1200.50 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 77: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1257.29)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.31

7.46

8.54

NL: 1.71E4m/z= 1257.04-1257.54 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 78: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1300.96)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

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35

40

45

50

55

60

65

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75

80

85

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6.32 NL: 1.35E4m/z= 1300.71-1301.21 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 79: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1333.66)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

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15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

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ativ

e Ab

unda

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6.31 NL: 9.31E3m/z= 1333.41-1333.91 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 80: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1372.00)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.31

6.37

7.46

NL: 6.06E3m/z= 1371.75-1372.25 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 81: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1405.02)d:\xcalibur\...\hu_23aug2013_qx43 CSF 1578 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/24/2013 12:34:11 AMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

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ativ

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unda

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6.31 NL: 1.13E4m/z= 1404.77-1405.27 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx43

Page 82: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 (all transitions)d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 0.00 - 12.01 SM: 3G

0 1 2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.35

7.857.79 7.96

6.726.23 6.915.90 9.088.11 9.635.32 11.294.03 10.08

NL: 2.77E5m/z= 914.94-915.44+942.96-943.46+975.73-976.23+1000.49-1000.99+1029.26-1029.76+1053.78-1054.28+1078.54-1079.04+1106.81-1107.31+1162.98-1163.48+1200.00-1200.50+1257.04-1257.54+1300.71-1301.21+1333.41-1333.91+1371.75-1372.25+1404.77-1405.27 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 83: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.35

6.728.75

NL: 6.53E3m/z= 914.94-915.44 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 84: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.37

6.34

6.41

7.09

NL: 1.74E4m/z= 942.96-943.46 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 85: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.35

6.31

8.036.78

NL: 2.03E4m/z= 975.73-976.23 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 86: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.35

6.32

9.087.79 8.347.64 8.88

NL: 1.95E4m/z= 1000.49-1000.99 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 87: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

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65

70

75

80

85

90

95

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Rel

ativ

e Ab

unda

nce

6.35

6.38

7.90

6.27 8.03

NL: 4.37E4m/z= 1029.26-1029.76 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 88: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

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85

90

95

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Rel

ativ

e Ab

unda

nce

6.35

7.85

7.797.117.886.49 8.117.145.855.50 10.969.14

NL: 5.64E4m/z= 1053.78-1054.28 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 89: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

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65

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75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.37

7.85

7.76

7.94 8.055.765.465.03

NL: 4.83E4m/z= 1078.54-1079.04 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 90: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

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20

25

30

35

40

45

50

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65

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Rel

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unda

nce

6.35

6.38

6.32

6.43 7.796.59 6.64

7.76

6.236.91

5.907.84

7.647.975.75

5.67 6.99 7.345.32 8.124.03 7.29

NL: 1.61E4m/z= 1106.81-1107.31 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 91: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

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65

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75

80

85

90

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Rel

ativ

e Ab

unda

nce

6.35

6.38

7.96

7.829.63

NL: 9.23E3m/z= 1162.98-1163.48 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 92: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

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65

70

75

80

85

90

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Rel

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e Ab

unda

nce

6.38

6.31

7.65 8.406.27

NL: 1.18E4m/z= 1200.00-1200.50 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 93: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.346.38

7.96 8.05

5.738.31

NL: 1.05E4m/z= 1257.04-1257.54 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 94: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.35

6.31

11.2910.08

NL: 1.42E4m/z= 1300.71-1301.21 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 95: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.35

6.40

7.55

NL: 7.27E3m/z= 1333.41-1333.91 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 96: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.38

6.34

7.96

NL: 6.12E3m/z= 1371.75-1372.25 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 97: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])d:\xcalibur\...\hu_23aug2013_qx30 CSF 1617 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 9:00:38 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

RT: 2.00 - 12.01 SM: 3G

2 3 4 5 6 7 8 9 10 11 12Time (min)

0

5

10

15

20

25

30

35

40

45

50

55

60

65

70

75

80

85

90

95

100

Rel

ativ

e Ab

unda

nce

6.37

6.40

NL: 1.22E4m/z= 1404.77-1405.27 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00] MS hu_23aug2013_qx30

Page 98: Chromatograms for summed and individual 15 transitions of 6 patient samples

Spectra for summed and individual 15 transitions of 6 patient samples (bottom) compared to standard in artificial CSF (top) and theoretical

spectra (inset) computed using IsoPro V3.0

Page 99: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 (all transitions)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450m/z

0

10

20

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50

60

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80

90

1000

10

20

30

40

50

60

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80

90

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Rel

ativ

e Ab

unda

nce

1054.031078.79

1029.26

1107.33

1200.591000.75 1334.001257.29

1405.03975.98 1300.97942.971162.56

1112.68 1438.051372.34

1219.26914.95 1124.87

1353.01953.78

1130.68 1380.141328.32

1273.38

1054.03 1079.04

1107.331029.26

1200.591257.29

1130.89 1333.991000.751300.97 1405.03

975.98943.22 1162.561438.05

1372.01914.95 1219.60

1353.33953.45

1167.29

920.10 1237.92 1268.48

NL: 2.66E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 2.17E4hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Standard

CSF 845

Page 100: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

912.0 912.5 913.0 913.5 914.0 914.5 915.0 915.5 916.0 916.5 917.0 917.5 918.0 918.5 919.0 919.5m/z

0

10

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50

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10

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914.95914.70

915.20

914.44

915.46

916.51915.94

914.95

914.70915.20

914.45

915.44

915.70 916.54

NL: 3.73E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.62E3hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

917916915914

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 101: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

940.0 940.5 941.0 941.5 942.0 942.5 943.0 943.5 944.0 944.5 945.0 945.5 946.0 946.5 947.0 947.5m/z

0

10

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50

60

70

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90

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10

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40

50

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90

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Rel

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942.97

943.22

943.47

942.72943.72

943.98

943.22

943.47

942.97

943.72

942.72

943.97

941.58

NL: 7.95E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 7.11E3hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

946945944943

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 102: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

973.5 974.0 974.5 975.0 975.5 976.0 976.5 977.0 977.5 978.0 978.5 979.0 979.5 980.0m/z

0

10

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50

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90

1000

10

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30

40

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90

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Rel

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975.98

976.23

975.73

976.47

976.73975.49

976.98

975.98

975.74

976.23

976.48

975.48

976.73

976.99973.80

NL: 8.08E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 7.21E3hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

978977976975

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 103: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

997 998 999 1000 1001 1002 1003 1004m/z

0

10

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50

60

70

80

90

1000

10

20

30

40

50

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80

90

100

Rel

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1000.75

1000.501001.00

1001.25

1001.491000.25

1001.76

1000.75

1001.001000.50

1001.24

1001.491000.25

1001.75

NL: 1.13E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 8.58E3hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0031.0021.0011.000

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 104: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1026 1027 1028 1029 1030 1031 1032 1033m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

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1029.26

1029.51

1029.01

1029.76

1030.011028.76

1030.26

1029.26

1029.51

1029.01

1029.76

1030.01

1028.761030.26

1030.74

NL: 1.64E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.41E4hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0321.0311.0301.029

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 105: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1051.0 1051.5 1052.0 1052.5 1053.0 1053.5 1054.0 1054.5 1055.0 1055.5 1056.0 1056.5 1057.0 1057.5m/z

0

10

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50

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10

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Rel

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unda

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1054.031054.28

1053.781054.53

1054.78

1053.53

1055.02

1055.271051.02 1056.22

1054.03

1054.27

1053.78

1054.52

1054.78

1053.52

1055.02

1055.25

NL: 2.66E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 2.14E4hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0561.0551.0541.053

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 106: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1075 1076 1077 1078 1079 1080 1081 1082 1083 1084m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

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Rel

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1078.79

1078.54

1079.29

1079.54

1078.29

1079.79

1082.511080.03 1082.19 1082.861075.03 1075.521079.04

1078.79

1078.541079.29

1079.54

1078.29

1079.79

1080.05 1082.511082.19 1082.841076.021075.03

NL: 2.51E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 2.17E4hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0821.0811.0801.0791.078

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 107: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1105.0 1105.5 1106.0 1106.5 1107.0 1107.5 1108.0 1108.5 1109.0 1109.5 1110.0m/z

0

10

20

30

40

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90

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10

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Rel

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1107.33

1107.06

1107.581106.811108.03

1109.18 1109.431106.57

1108.93 1109.671108.371105.66 1109.93

1107.33

1107.05

1107.671108.031106.81

1109.421109.191106.58 1108.921108.671108.391106.351105.991105.65 1109.66

NL: 1.41E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.46E4hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.1101.1091.1081.1071.106

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 108: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1160 1161 1162 1163 1164 1165 1166 1167m/z

0

10

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50

60

70

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90

1000

10

20

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Rel

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1162.561162.89

1163.23

1162.24

1163.56

1163.90

1162.56

1162.89

1163.22

1162.23

1163.56

1163.89

1167.021164.24

NL: 7.21E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 6.73E3hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.1661.1651.1641.1631.162

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 109: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1197 1198 1199 1200 1201 1202 1203 1204m/z

0

10

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40

50

60

70

80

90

1000

10

20

30

40

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Rel

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1200.59

1200.921200.26

1199.931201.25

1201.59

1201.93 1202.28

1200.59

1200.26

1200.92

1201.261199.93

1201.59

1201.911199.70

NL: 1.20E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.05E4hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.2041.2031.2021.2011.200

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 110: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1255.0 1255.5 1256.0 1256.5 1257.0 1257.5 1258.0 1258.5 1259.0 1259.5 1260.0m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

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unda

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1257.29

1256.961257.62

1257.951256.63

1258.29

1258.63

1257.29

1256.95

1257.62

1257.96

1256.63

1258.29

1258.65

NL: 1.09E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 9.67E3hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.2611.2601.2591.2581.2571.256

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 111: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

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unda

nce

1300.97

1301.301300.64

1301.64

1300.31

1301.97

1300.97

1301.31

1300.64

1301.64

1300.31

1301.97

NL: 8.04E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 8.02E3hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3041.3031.3021.3011.300

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 112: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1329 1330 1331 1332 1333 1334 1335 1336 1337 1338 1339m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

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40

50

60

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80

90

100

Rel

ativ

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1334.00

1334.33

1333.66

1334.66

1335.00

1333.33

1335.34

1333.99

1333.661334.32

1334.66

1335.001333.33

1335.301337.81

NL: 1.12E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 8.85E3hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3371.3361.3351.3341.333

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 113: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1367 1368 1369 1370 1371 1372 1373 1374 1375 1376m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1372.34

1372.01

1371.68

1372.68

1373.011371.34

1372.01

1371.67

1372.35

1372.66

1371.35

1373.00

1373.34

NL: 5.44E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 4.24E3hu_23aug2013_qx31#865-894 RT: 6.31-6.44 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3751.3741.3731.3721.371

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 114: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 845 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1400 1401 1402 1403 1404 1405 1406 1407 1408 1409 1410m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

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80

90

100

Rel

ativ

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unda

nce

1405.03

1405.37

1404.701405.71

1406.041404.36

1406.37

1405.03

1405.37

1404.69

1405.70

1406.031404.36

1406.36

NL: 8.18E3hu_23aug2013_qx15#837-864 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 8.66E3hu_23aug2013_qx31#868-892 RT: 6.32-6.44 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.4081.4071.4061.4051.404

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 845theoretical

Page 115: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 (all transitions)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

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unda

nce

1054.031078.79

1029.26

1107.33

1200.591000.75 1334.001257.29

1405.03975.98 1300.97942.971162.56

1112.68 1438.051372.34

1219.26914.95 1124.87

1353.01953.78

1130.681380.141328.32

1273.381107.34

1112.681054.02

1078.79

1130.901029.26

1200.59

1257.29 1333.991000.75 1300.97975.98942.97 1162.89 1405.02

1438.05914.95

1372.001219.60

1353.33953.44 1233.481184.97

930.19

NL: 2.66E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.23E4hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Standard

CSF 1332

Page 116: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

913.0 913.5 914.0 914.5 915.0 915.5 916.0 916.5 917.0 917.5 918.0 918.5 919.0 919.5 920.0 920.5m/z

0

10

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50

60

70

80

90

1000

10

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30

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50

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80

90

100

Rel

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nce

914.95914.70

915.20

914.44

915.46

916.51915.94

914.95

914.70915.20

914.44913.88

NL: 3.73E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.81E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

917916915914

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 117: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

939.5 940.0 940.5 941.0 941.5 942.0 942.5 943.0 943.5 944.0 944.5 945.0 945.5 946.0 946.5m/z

0

10

20

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80

90

100

110

0

10

20

30

40

50

60

70

80

90

100

110

Rel

ativ

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942.97

943.22

943.47

942.72943.72

943.98

942.97 943.22

943.47

942.72

943.72943.97

NL: 7.95E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.31E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

946945944943

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 118: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

973 974 975 976 977 978 979 980m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

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50

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90

100

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Rel

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975.98

976.23

975.73

976.47

976.73975.49

972.47976.98972.78

975.98

975.73

976.23

976.74975.46

972.46

NL: 8.08E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.44E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

978977976975

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 119: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

998 999 1000 1001 1002 1003 1004 1005m/z

0

10

20

30

40

50

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70

80

90

100

110

0

10

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100

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Rel

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1000.75

1000.50 1001.00

1001.25

1001.491000.25

1001.76

1000.75

1001.00

1000.491001.25

1000.25

1001.47

NL: 1.13E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.75E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0031.0021.0011.000

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 120: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1026 1027 1028 1029 1030 1031 1032 1033m/z

0

10

20

30

40

50

60

70

80

90

100

0

10

20

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40

50

60

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80

90

100

Rel

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1029.26

1029.51

1029.01

1029.76

1030.011028.76

1030.26

1029.26

1029.51

1029.01

1029.76

1030.00

1028.781030.25

NL: 1.64E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 6.61E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0321.0311.0301.029

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 121: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1052.5 1053.0 1053.5 1054.0 1054.5 1055.0 1055.5 1056.0 1056.5 1057.0 1057.5 1058.0 1058.5 1059.0m/z

0

10

20

30

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50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1054.031054.28

1053.781054.53

1054.78

1053.53

1055.02

1055.271056.22

1054.02

1054.27

1053.771054.52

1054.77

1053.53

1055.01

NL: 2.66E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 9.92E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0561.0551.0541.053

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 122: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1075 1076 1077 1078 1079 1080 1081 1082 1083m/z

0

10

20

30

40

50

60

70

80

90

100

0

10

20

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40

50

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80

90

100

Rel

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1078.79

1078.54

1079.29

1079.54

1078.29

1079.79

1082.511080.03 1082.861074.78 1081.871075.52

1078.79

1078.54

1079.29

1079.54

1078.30

1079.78

1077.54 1083.661075.05 1076.62 1082.49

NL: 2.51E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 8.43E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0821.0811.0801.0791.078

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 123: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1106 1107 1108 1109 1110 1111 1112m/z

0

10

20

30

40

50

60

70

80

90

100

0

10

20

30

40

50

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80

90

100

Rel

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1107.33

1107.06

1107.581106.811108.03 1112.38

1109.18 1111.671106.57

1108.93 1112.001109.671108.371105.66 1109.93 1111.16

1107.34

1107.68

1112.37

1111.671108.02

1107.041109.17 1112.00

1108.931108.381106.63 1109.421111.411105.65 1110.991106.31

NL: 1.41E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.23E4hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.1101.1091.1081.1071.106

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 124: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

30

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50

60

70

80

90

100

110

Rel

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unda

nce

1162.56

1163.23

1162.24

1163.56

1163.90

1162.89

1162.57

1162.23 1163.23

1163.56

1163.90

NL: 7.21E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.07E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.1661.1651.1641.1631.162

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 125: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1198.0 1198.5 1199.0 1199.5 1200.0 1200.5 1201.0 1201.5 1202.0 1202.5 1203.0 1203.5 1204.0 1204.5 1205.0m/z

0

10

20

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80

90

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110

0

10

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40

50

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90

100

110

Rel

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1200.59

1200.921200.26

1199.931201.25

1201.59

1201.93 1202.28

1200.59

1200.92

1200.27

1201.25

1199.93

1201.591199.461201.92

NL: 1.20E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 5.13E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.2041.2031.2021.2011.200

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 126: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1254 1255 1256 1257 1258 1259 1260 1261 1262m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

30

40

50

60

70

80

90

100

110

Rel

ativ

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unda

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1257.29

1256.961257.62

1257.951256.63

1258.29

1258.63

1257.29

1256.95

1257.62

1256.62 1257.95

1258.29

1258.62

NL: 1.09E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 4.32E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.2611.2601.2591.2581.2571.256

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 127: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1299 1300 1301 1302 1303 1304 1305 1306m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

30

40

50

60

70

80

90

100

110

Rel

ativ

e Ab

unda

nce

1300.97

1301.301300.64

1301.64

1300.31

1301.97

1300.97

1300.64

1301.30

1301.63

1301.971300.33

NL: 8.04E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.70E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3041.3031.3021.3011.300

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 128: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1331 1332 1333 1334 1335 1336 1337m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

30

40

50

60

70

80

90

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110

Rel

ativ

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unda

nce

1334.00

1334.33

1333.66

1334.66

1335.00

1333.33

1335.34 1335.67

1333.99

1334.33

1333.66

1334.66

1334.971333.33 1335.32

NL: 1.12E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 4.08E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3371.3361.3351.3341.333

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 129: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1369 1370 1371 1372 1373 1374 1375m/z

0

10

20

30

40

50

60

70

80

90

100

110

120

0

10

20

30

40

50

60

70

80

90

100

110

120

Rel

ativ

e Ab

unda

nce

1372.34

1372.01

1371.68

1372.68

1373.011371.34

1372.00

1372.34

1372.67

1371.66

NL: 5.44E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.41E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3751.3741.3731.3721.371

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 130: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1332 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1401 1402 1403 1404 1405 1406 1407 1408 1409 1410m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

30

40

50

60

70

80

90

100

110

Rel

ativ

e Ab

unda

nce

1405.03

1405.37

1404.701405.71

1406.041404.36

1406.37

1405.021405.36

1404.69

1405.70

1406.03

1404.37

NL: 8.18E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.04E3hu_23aug2013_qx44#869-892 RT: 6.34-6.44 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.4081.4071.4061.4051.404

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1332theoretical

Page 131: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 (all transitions)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1054.031078.79

1029.26

1107.33

1200.591000.75 1334.001257.29

1405.03975.98 1300.97942.971162.56

1112.68 1438.051372.34

1219.26914.95 1124.87

1353.011129.58953.78

1328.32

1273.381054.02 1078.79

1131.23

1107.34

1029.26

1257.29

1000.75 1200.60 1300.971405.031333.99

1162.89975.98943.221438.06

1219.601372.01914.95

1353.00953.44

1281.701242.541193.00938.96

1418.50

NL: 2.66E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.44E4hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Standard

CSF 1502

Page 132: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

911.0 911.5 912.0 912.5 913.0 913.5 914.0 914.5 915.0 915.5 916.0 916.5 917.0 917.5 918.0 918.5m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

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80

90

100

Rel

ativ

e Ab

unda

nce

914.95914.70

915.20

914.44

915.46

916.51915.94

914.95

914.70

914.45 915.45915.21

913.82 917.38

NL: 3.73E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.94E3hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

917916915914

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 133: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

940.5 941.0 941.5 942.0 942.5 943.0 943.5 944.0 944.5 945.0 945.5 946.0 946.5 947.0m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

942.97

943.22

943.47

942.72943.72

943.98

943.22942.97

943.47

943.72

942.72

943.97940.72 944.23 945.17

NL: 7.95E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.67E3hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

946945944943

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 134: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

973.0 973.5 974.0 974.5 975.0 975.5 976.0 976.5 977.0 977.5 978.0 978.5 979.0 979.5 980.0m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

975.98

976.23

975.73

976.47

976.73975.49

976.98972.78

975.98

976.23

975.73

976.48

976.73

976.98975.49

NL: 8.08E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.84E3hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

978977976975

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 135: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

997 998 999 1000 1001 1002 1003 1004m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

30

40

50

60

70

80

90

100

110

Rel

ativ

e Ab

unda

nce

1000.75

1000.50 1001.00

1001.25

1001.491000.25

1001.76

1000.75

1000.99

1000.51

1001.25

1000.251001.74

996.75

NL: 1.13E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 5.32E3hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0031.0021.0011.000

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 136: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1026.5 1027.0 1027.5 1028.0 1028.5 1029.0 1029.5 1030.0 1030.5 1031.0 1031.5 1032.0 1032.5 1033.0 1033.5m/z

0

10

20

30

40

50

60

70

80

90

100

1100

10

20

30

40

50

60

70

80

90

100

110

Rel

ativ

e Ab

unda

nce

1029.26

1029.51

1029.01

1029.76

1030.011028.76

1030.26

1029.26

1029.51

1029.01

1029.76

1030.011028.76

1030.26

NL: 1.64E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 9.55E3hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0321.0311.0301.029

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 137: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1051 1052 1053 1054 1055 1056 1057 1058m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1054.03

1053.781054.53

1054.78

1053.53

1055.02

1055.271050.51 1051.02 1056.22

1054.02

1054.27

1053.77 1054.52

1054.77

1053.531055.02

1055.27

NL: 2.66E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.44E4hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0561.0551.0541.053

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 138: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1076 1077 1078 1079 1080 1081 1082 1083m/z

0

10

20

30

40

50

60

70

80

90

100

0

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1078.79

1078.54

1079.29

1079.54

1078.29

1079.79

1082.511080.03 1082.19 1082.861075.52

1078.79

1079.04

1078.54

1079.29

1079.54

1078.29

1079.78

1082.181081.851075.50 1082.51 1083.16

NL: 2.51E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.41E4hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0821.0811.0801.0791.078

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 139: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1104 1105 1106 1107 1108 1109 1110 1111m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1107.33

1107.06

1107.581106.811108.03

1109.18 1109.431106.57

1108.93 1109.671108.371105.661104.15 1104.91 1109.93 1111.16

1107.34

1107.68

1107.05

1108.02

1109.431106.82 1108.911109.671108.36

1104.17 1105.98 1106.671104.66 1111.381105.42 1110.911109.93

NL: 1.41E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.23E4hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.1101.1091.1081.1071.106

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 140: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1160.5 1161.0 1161.5 1162.0 1162.5 1163.0 1163.5 1164.0 1164.5 1165.0 1165.5 1166.0 1166.5 1167.0m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1162.561162.89

1163.23

1162.24

1163.56

1163.90

1162.891162.56

1163.23

1162.23

1163.55

1165.191163.88

NL: 7.21E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.98E3hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.1661.1651.1641.1631.162

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 141: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1197 1198 1199 1200 1201 1202 1203 1204m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

30

40

50

60

70

80

90

100

110

Rel

ativ

e Ab

unda

nce

1200.59

1200.921200.26

1199.931201.25

1201.59

1201.93 1202.28

1200.601200.251200.92

1199.931201.25

1201.59

NL: 1.20E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 5.35E3hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.2041.2031.2021.2011.200

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 142: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1253 1254 1255 1256 1257 1258 1259 1260 1261 1262m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

30

40

50

60

70

80

90

100

110

Rel

ativ

e Ab

unda

nce

1257.29

1256.961257.62

1257.951256.63

1258.29

1258.63

1257.29

1257.621256.96

1257.95

1256.62

1258.28

NL: 1.09E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 6.68E3hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.2611.2601.2591.2581.2571.256

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 143: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1298.5 1299.0 1299.5 1300.0 1300.5 1301.0 1301.5 1302.0 1302.5 1303.0 1303.5 1304.0 1304.5 1305.0 1305.5m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

30

40

50

60

70

80

90

100

110

Rel

ativ

e Ab

unda

nce

1300.97

1301.301300.64

1301.64

1300.31

1301.97

1300.97

1300.64 1301.30

1301.61

1301.971300.33

1302.30

NL: 8.04E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 5.34E3hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3041.3031.3021.3011.300

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 144: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1330 1331 1332 1333 1334 1335 1336 1337 1338 1339m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1334.00

1334.33

1333.66

1334.66

1335.00

1333.33

1335.34

1333.99

1334.331333.66

1334.66

1333.33

1335.00

1335.31

NL: 1.12E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 4.75E3hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3371.3361.3351.3341.333

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 145: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1367 1368 1369 1370 1371 1372 1373 1374 1375 1376m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1372.34

1372.01

1371.68

1372.68

1373.011371.34

1372.01

1372.34

1371.67

1372.671371.36 1373.37

NL: 5.44E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 2.27E3hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3751.3741.3731.3721.371

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 146: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1502 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1403 1404 1405 1406 1407 1408 1409 1410m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

30

40

50

60

70

80

90

100

110

Rel

ativ

e Ab

unda

nce

1405.03

1405.37

1404.701405.71

1406.041404.36

1406.37

1405.03

1404.69

1405.37

1405.70

1406.021404.37

1406.37

NL: 8.18E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 4.73E3hu_23aug2013_qx42#866-891 RT: 6.32-6.43 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.4081.4071.4061.4051.404

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1502theoretical

Page 147: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 (all transitions)d:\xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450m/z

0

10

20

30

40

50

60

70

80

90

100

0

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1054

.03

z=4

1078

.79

z=4

1029

.26

z=4

1107

.33

z=4

1200

.59

z=3

1000

.75

z=4

1333

.99

z=3

1257

.29

z=3

1405

.03

z=3

975.

98z=

4

1300

.97

z=3

942.

97z=

4

1113

.67

z=?

1162

.56

z=3

1438

.05

z=3

1372

.34

z=3

1079

.79

z=4

1219

.60

z=3

1047

.03

z=4

1055

.02

z=4

914.

95z=

4

1124

.87

z=?

1353

.00

z=3

1301

.97

z=3

976.

73z=

4

953.

79z=

3

1258

.62

z=3

1055

.27

z=4

1439

.39

z=3

1380

.14

z=?

1273

.38

z=?

1107

.34

z=?

1078

.79

z=4

1112

.68

z=4

1054

.03

z=4

1113

.68

z=4

1029

.26

z=4

1130

.89

z=?

1200

.59

z=3

1000

.75

z=4

1257

.29

z=3

943.

22z=

4

1162

.88

z=?

1405

.04

z=3

1334

.00

z=3

1300

.97

z=3

1079

.55

z=4

975.

98z=

4

1438

.36

z=?

1372

.01

z=3

1201

.26

z=310

55.0

3z=

4

1047

.28

z=4

1219

.26

z=3

915.

20z=

4

1089

.29

z=?

1352

.67

z=?

1101

.67

z=3

1301

.97

z=3

1055

.26

z=?

953.

45z=

?

1178

.84

z=?

1158

.79

z=?

938.

68z=

?

1218

.95

z=?

1138

.49

z=?

NL: 2.40E4hu_23aug2013_qx15#835-862 RT: 6.15-6.29 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.06E4hu_23aug2013_qx29#860-888 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Standard

CSF 1541

Page 148: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

d:\xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

911.0 911.5 912.0 912.5 913.0 913.5 914.0 914.5 915.0 915.5 916.0 916.5 917.0 917.5 918.0 918.5 919.0m/z

0

10

20

30

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60

70

80

90

100

0

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

914.

95z=

4

914.

70z=

4

915.

20z=

4

914.

44z=

4

915.

46z=

4

916.

51z=

?

915.

94z=

4

915.

20z=

4

914.

70z=

491

4.96

z=4

915.

46z=

4

NL: 3.32E3hu_23aug2013_qx15#835-862 RT: 6.15-6.29 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.08E3hu_23aug2013_qx29#860-888 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

917916915914

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 149: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

D:\Xcalibur\...\hu_23aug2013_qx29 CSF 1541 (AL13-039)ProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 8:44:11 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

941.0 941.5 942.0 942.5 943.0 943.5 944.0 944.5 945.0 945.5m/z

0

10

20

30

40

50

60

70

80

90

100

0

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

942.

97z=

4

943.

22z=

4

943.

47z=

4

942.

72z=

4

943.

72z=

4

943.

98z=

4

943.

22z=

4

943.

47z=

4

942.

97z=

4

942.

71z=

4

943.

73z=

?

943.

97z=

4

NL: 6.78E3hu_23aug2013_qx15#835-862 RT: 6.15-6.29 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.57E3hu_23aug2013_qx29#860-888 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

946945944943

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 150: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

d:\xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

974.0 974.5 975.0 975.5 976.0 976.5 977.0 977.5 978.0 978.5 979.0m/z

0

10

20

30

40

50

60

70

80

90

100

0

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

975.

98z=

4

976.

23z=

4

975.

73z=

?

976.

47z=

4

976.

73z=

4

975.

49z=

?

976.

98z=

4

975.

98z=

4

976.

24z=

4

975.

73z=

4

976.

48z=

4

976.

73z=

4

976.

99z=

?

975.

49z=

?

NL: 6.92E3hu_23aug2013_qx15#835-862 RT: 6.15-6.29 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 2.21E3hu_23aug2013_qx29#860-888 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

978977976975

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 151: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

d:\xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007m/z

0

10

20

30

40

50

60

70

80

90

100

0

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1000

.75

z=4

1001

.00

z=4

1000

.50

z=4

1001

.25

z=4

1001

.49

z=4

1000

.25

z=4

1001

.76

z=?

996.

27z=

?

1002

.57

z=?

1000

.75

z=4

1001

.00

z=4

1000

.50

z=4

1001

.25

z=4

1000

.24

z=4

1001

.50

z=4

1001

.75

z=4

NL: 9.73E3hu_23aug2013_qx15#835-862 RT: 6.15-6.29 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.78E3hu_23aug2013_qx29#860-888 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0031.0021.0011.000

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 152: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

d:\xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034 1035m/z

0

10

20

30

40

50

60

70

80

90

100

0

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1029

.26

z=4

1029

.51

z=4

1029

.01

z=4

1029

.76

z=4

1030

.01

z=4

1028

.76

z=4

1030

.25

z=4

1025

.24

z=?

1029

.26

z=4

1029

.51

z=4

1029

.01

z=4

1029

.76

z=4

1030

.01

z=4

1028

.77

z=?

1030

.25

z=?

NL: 1.39E4hu_23aug2013_qx15#835-862 RT: 6.15-6.29 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 6.51E3hu_23aug2013_qx29#860-888 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0321.0311.0301.029

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 153: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1050 1051 1052 1053 1054 1055 1056 1057 1058 1059m/z

0

10

20

30

40

50

60

70

80

90

100

0

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1054

.03

z=4

1054

.28

z=4

1053

.78

z=4

1054

.53

z=4

1054

.78

z=4

1053

.53

z=4

1055

.02

z=4

1055

.27

z=4

1049

.77

z=4

1049

.52

z=4

1050

.27

z=4

1050

.51

z=4

1051

.02

z=4

1055

.53

z=4

1056

.22

z=?

1054

.03

z=4

1054

.28

z=4

1053

.78

z=4

1054

.53

z=4

1054

.78

z=4

1053

.53

z=4

1055

.03

z=4

1055

.26

z=?

1049

.77

z=1

1059

.45

z=?

NL: 2.66E4hu_23aug2013_qx15#837-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.19E4hu_23aug2013_qx29#865-885 RT: 6.31-6.40 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0561.0551.0541.053

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 154: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1076.0 1076.5 1077.0 1077.5 1078.0 1078.5 1079.0 1079.5 1080.0 1080.5 1081.0 1081.5 1082.0m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1078.791079.04

1078.54

1079.29

1079.54

1078.29

1079.79

1080.03 1082.191081.87

1078.79

1079.041078.55

1079.30

1079.55

1078.30

1079.791077.88

NL: 2.51E4hu_23aug2013_qx15#836-864 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.12E4hu_23aug2013_qx29#860-885 RT: 6.29-6.40 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0821.0811.0801.0791.078

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 155: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1104.5 1105.0 1105.5 1106.0 1106.5 1107.0 1107.5 1108.0 1108.5 1109.0 1109.5 1110.0m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1107.33

1107.06

1107.581106.811108.03

1109.18 1109.431106.57

1108.93 1109.671108.371105.661104.15 1104.91 1109.931104.40

1107.34

1107.691108.02

1107.05

1109.431109.17

1106.651108.93

1108.65 1109.671104.16

1108.37

1105.661104.65 1105.961104.90 1106.36

NL: 1.41E4hu_23aug2013_qx15#836-864 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.06E4hu_23aug2013_qx29#860-885 RT: 6.29-6.40 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.1101.1091.1081.1071.106

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 156: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1159 1160 1161 1162 1163 1164 1165 1166 1167m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1162.561162.89

1163.23

1162.24

1163.56

1163.90

1162.88

1162.57

1163.21

1162.231163.57

1158.79 1164.76

NL: 7.21E3hu_23aug2013_qx15#836-864 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.61E3hu_23aug2013_qx29#860-885 RT: 6.29-6.40 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.1661.1651.1641.1631.162

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 157: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1195 1196 1197 1198 1199 1200 1201 1202 1203 1204m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1200.59

1200.921200.26

1199.931201.25

1201.59

1201.93

1200.59

1200.261200.93

1201.261199.93

1201.60

NL: 1.20E4hu_23aug2013_qx15#836-864 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 5.08E3hu_23aug2013_qx29#860-885 RT: 6.29-6.40 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.2041.2031.2021.2011.200

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 158: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1257.29

1256.961257.62

1257.951256.63

1258.29

1258.63

1257.29

1256.96

1257.62

1257.96

1256.64

1258.29

NL: 1.09E4hu_23aug2013_qx15#836-864 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 4.20E3hu_23aug2013_qx29#860-885 RT: 6.29-6.40 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.2611.2601.2591.2581.2571.256

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 159: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1300.97

1301.301300.64

1301.64

1300.31

1301.97

1300.641301.31

1301.64

1300.311301.97

NL: 8.04E3hu_23aug2013_qx15#836-864 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.31E3hu_23aug2013_qx29#860-885 RT: 6.29-6.40 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3041.3031.3021.3011.300

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 160: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1328 1329 1330 1331 1332 1333 1334 1335 1336 1337 1338 1339 1340 1341m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1334.00

1334.33

1333.66

1334.66

1335.00

1333.33

1335.34

1328.32

1334.00

1333.67 1334.33

1334.66

1333.351334.99

NL: 1.12E4hu_23aug2013_qx15#836-864 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.45E3hu_23aug2013_qx29#860-885 RT: 6.29-6.40 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3371.3361.3351.3341.333

100

90

80

70

60

50

40

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theoretical

Page 161: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1368 1369 1370 1371 1372 1373 1374 1375 1376 1377m/z

0

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10

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1372.34

1372.01

1371.68

1372.68

1373.011371.34

1372.011372.35

1371.68

1373.01

NL: 5.44E3hu_23aug2013_qx15#836-864 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 2.08E3hu_23aug2013_qx29#860-885 RT: 6.29-6.40 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3751.3741.3731.3721.371

100

90

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70

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theoretical

Page 162: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1541 ([email protected])

Standard

CSF 1541

D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1399 1400 1401 1402 1403 1404 1405 1406 1407 1408 1409 1410 1411 1412m/z

0

10

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50

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70

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90

1000

10

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Rel

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1405.03

1405.37

1404.701405.71

1406.041404.36

1406.37

1405.04

1405.36

1404.69

1405.701406.04

1404.38

1406.37

NL: 8.18E3hu_23aug2013_qx15#836-864 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.59E3hu_23aug2013_qx29#860-885 RT: 6.29-6.40 AV: 8 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.4081.4071.4061.4051.404

100

90

80

70

60

50

40

30

20

10

0

theoretical

Page 163: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (all transitions)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

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Rel

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1054.031078.79

1029.26

1107.33

1200.591000.75 1334.001257.29

1405.03975.98 1300.97942.971162.56

1112.68 1438.051372.34

1219.26914.95 1124.87

1353.01953.78

1130.68

1328.321273.381054.03 1078.79

1029.261107.33

1200.591000.74 1257.291333.991131.23

1162.89 1405.031300.97943.22

976.23 1438.05

1372.341219.27914.95

1353.01953.451457.31

939.23

1239.951169.19 1270.611380.63

NL: 2.66E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 2.29E4hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Standard

CSF 1578

Page 164: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 915.19)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

912.5 913.0 913.5 914.0 914.5 915.0 915.5 916.0 916.5 917.0 917.5 918.0 918.5 919.0 919.5m/z

0

10

20

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50

60

70

80

90

1000

10

20

30

40

50

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80

90

100

Rel

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914.95914.70

915.20

914.44

915.46

916.51915.94

914.95914.70

915.20

914.44

915.47

915.70 915.95914.17

NL: 3.73E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.52E3hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

917916915914

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 165: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 943.21)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

940.5 941.0 941.5 942.0 942.5 943.0 943.5 944.0 944.5 945.0 945.5 946.0 946.5 947.0 947.5m/z

0

10

20

30

40

50

60

70

80

90

100

110

120

0

10

20

30

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60

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100

110

120

Rel

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942.97

943.22

943.47

942.72943.72

943.98

943.22

942.97943.46

943.72942.72

943.96940.71

NL: 7.95E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 6.98E3hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

946945944943

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 166: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 975.98)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

972 973 974 975 976 977 978 979m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

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100

110

Rel

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975.98

976.23

975.73

976.47

976.73975.49

972.47971.22 976.98972.78

976.23975.98

975.73

976.47975.49

976.72

976.98973.45973.15972.23

NL: 8.08E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 6.20E3hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

978977976975

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 167: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1000.74)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

998.5 999.0 999.5 1000.0 1000.5 1001.0 1001.5 1002.0 1002.5 1003.0 1003.5 1004.0 1004.5 1005.0m/z

0

10

20

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40

50

60

70

80

90

100

110

0

10

20

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50

60

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90

100

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Rel

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1000.75

1000.50 1001.00

1001.25

1001.491000.25

1001.76

1000.74

1001.001000.50

1001.25

1001.49

1000.251001.76

NL: 1.13E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.07E4hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0031.0021.0011.000

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 168: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1029.51)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1027 1028 1029 1030 1031 1032 1033 1034m/z

0

10

20

30

40

50

60

70

80

90

100

1100

10

20

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50

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Rel

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1029.26

1029.51

1029.01

1029.76

1030.011028.76

1030.26

1029.26

1029.51

1029.01

1029.76

1030.01

1028.76

1030.25

NL: 1.64E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.51E4hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0321.0311.0301.029

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 169: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1054.03)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1051.5 1052.0 1052.5 1053.0 1053.5 1054.0 1054.5 1055.0 1055.5 1056.0 1056.5 1057.0 1057.5 1058.0 1058.5m/z

0

10

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50

60

70

80

90

1000

10

20

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40

50

60

70

80

90

100

Rel

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1054.031054.28

1053.781054.53

1054.78

1053.53

1055.02

1055.271056.22

1054.03

1054.27

1053.78

1054.53

1054.781053.53

1055.02

1055.26

NL: 2.66E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 2.29E4hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0561.0551.0541.053

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 170: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1078.79)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1077.0 1077.5 1078.0 1078.5 1079.0 1079.5 1080.0 1080.5 1081.0 1081.5 1082.0 1082.5 1083.0 1083.5m/z

0

10

20

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60

70

80

90

100

0

10

20

30

40

50

60

70

80

90

100

Rel

ativ

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unda

nce

1078.791079.04

1078.54

1079.29

1079.54

1078.29

1079.79

1082.511080.03 1082.19 1082.861081.87 1083.19

1078.791079.04

1078.541079.29

1079.54

1078.29

1079.79

1082.521082.18 1082.851080.02 1083.171081.85

NL: 2.51E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 2.25E4hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0821.0811.0801.0791.078

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 171: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1107.06)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1105 1106 1107 1108 1109 1110 1111 1112m/z

0

10

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90

100

110

0

10

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Rel

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1107.33

1107.06

1107.581106.811108.03 1112.38

1109.18 1111.671106.57

1108.93 1112.001109.671108.371105.66 1109.93 1111.16

1107.33

1107.05

1107.68 1108.03 1109.431112.37

1111.671106.821109.18

1106.581112.001109.661108.66

1108.39

1105.67 1111.361105.13 1110.68

NL: 1.41E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.39E4hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.1101.1091.1081.1071.106

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 172: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1163.23)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1158 1159 1160 1161 1162 1163 1164 1165 1166 1167m/z

0

10

20

30

40

50

60

70

80

90

100

1100

10

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100

110

Rel

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nce

1162.56

1163.23

1162.24

1163.56

1163.90

1162.89

1162.57

1163.23

1162.23 1163.56

1163.90

1164.24

NL: 7.21E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 7.93E3hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.1661.1651.1641.1631.162

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 173: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1200.25)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1198 1199 1200 1201 1202 1203 1204 1205m/z

0

10

20

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40

50

60

70

80

90

100

110

0

10

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Rel

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1200.59

1200.921200.26

1199.931201.25

1201.59

1201.93 1202.28

1200.591200.26

1200.92

1199.931201.25

1201.59

1205.36

NL: 1.20E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.07E4hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.2041.2031.2021.2011.200

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 174: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1257.29)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1254 1255 1256 1257 1258 1259 1260 1261m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

30

40

50

60

70

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90

100

110

Rel

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unda

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1257.29

1256.961257.62

1257.951256.63

1258.29

1258.63

1257.29

1257.621256.96

1256.63

1257.95

1258.29

1261.481258.61

NL: 1.09E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.02E4hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.2611.2601.2591.2581.2571.256

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 175: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1300.96)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1298.5 1299.0 1299.5 1300.0 1300.5 1301.0 1301.5 1302.0 1302.5 1303.0 1303.5 1304.0 1304.5 1305.0m/z

0

10

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80

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100

110

0

10

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Rel

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nce

1300.97

1301.301300.64

1301.64

1300.31

1301.97

1300.97

1301.311300.64

1301.64

1300.31

1301.96

1302.29

NL: 8.04E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 7.70E3hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3041.3031.3021.3011.300

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 176: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1333.66)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1330 1331 1332 1333 1334 1335 1336 1337 1338 1339m/z

0

10

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40

50

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70

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110

0

10

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Rel

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1334.00

1334.33

1333.66

1334.66

1335.00

1333.33

1335.34

1333.99

1334.33

1333.66

1334.66

1333.341334.99

NL: 1.12E4hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 9.13E3hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3371.3361.3351.3341.333

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 177: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1372.00)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1369 1370 1371 1372 1373 1374 1375m/z

0

10

20

30

40

50

60

70

80

90

100

110

120

0

10

20

30

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70

80

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100

110

120

Rel

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1372.34

1372.01

1371.68

1372.68

1373.011371.34

1372.34

1372.00

1371.67

1372.68

1371.341373.34

1373.01

NL: 5.44E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 4.54E3hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3751.3741.3731.3721.371

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 178: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1578 (m/z = 1405.02)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1403 1404 1405 1406 1407 1408 1409 1410m/z

0

10

20

30

40

50

60

70

80

90

100

110

0

10

20

30

40

50

60

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80

90

100

110

Rel

ativ

e Ab

unda

nce

1405.03

1405.37

1404.701405.71

1406.041404.36

1406.37

1405.031405.37

1404.69

1405.70

1406.041404.36

NL: 8.18E3hu_23aug2013_qx15#838-863 RT: 6.17-6.29 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 7.80E3hu_23aug2013_qx43#854-876 RT: 6.26-6.35 AV: 7 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.4081.4071.4061.4051.404

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1578theoretical

Page 179: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 (all transitions)D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450m/z

0

10

20

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50

60

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90

1000

10

20

30

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50

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Rel

ativ

e Ab

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1054.03

1078.79

1029.261107.33

1200.591000.75 1334.001257.29

1405.031300.97975.98942.97 1112.68 1162.561438.06

1372.341219.26

914.95 1124.871353.01

953.78

1328.32

1273.381167.91

1054.03

1078.79

1107.341029.26

1112.68

1200.59 1256.96 1300.97 1333.991000.75

1405.03 1438.391162.89943.22 975.99

1219.60 1372.01914.95

1353.00953.45 1380.65

925.591430.15

1240.23 1294.94

NL: 2.46E4hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.68E4hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Standard

CSF 1617

Page 180: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

911 912 913 914 915 916 917 918 919m/z

0

10

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30

40

50

60

70

80

90

1000

10

20

30

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50

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90

100

Rel

ativ

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unda

nce

914.95914.70

915.20

914.44

915.46

916.51915.94

914.95

914.70

915.21

914.45915.49

NL: 3.35E3hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 2.10E3hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

917916915914

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 181: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

940.5 941.0 941.5 942.0 942.5 943.0 943.5 944.0 944.5 945.0 945.5 946.0 946.5 947.0m/z

0

10

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30

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50

60

70

80

90

1000

10

20

30

40

50

60

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80

90

100

Rel

ativ

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942.97

943.22

943.47

942.72943.72

943.98

943.22

943.47942.97

943.73

942.71

943.98

944.49

NL: 7.14E3hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.98E3hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

946945944943

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 182: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

972.0 972.5 973.0 973.5 974.0 974.5 975.0 975.5 976.0 976.5 977.0 977.5 978.0 978.5 979.0 979.5m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

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80

90

100

Rel

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unda

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975.98

976.23

975.73

976.47

976.73975.49

972.47976.98972.78

975.99976.23

975.73

976.48

975.49

976.74

976.99

NL: 7.26E3hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 3.90E3hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

978977976975

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 183: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

999 1000 1001 1002 1003 1004 1005 1006m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

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80

90

100

Rel

ativ

e Ab

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nce

1000.75

1000.50 1001.00

1001.25

1001.491000.25

1001.76

1000.75

1001.00

1000.50

1001.25

1000.251001.49

NL: 1.01E4hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 6.15E3hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0031.0021.0011.000

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 184: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1027.0 1027.5 1028.0 1028.5 1029.0 1029.5 1030.0 1030.5 1031.0 1031.5 1032.0 1032.5 1033.0 1033.5 1034.0m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1029.26

1029.51

1029.01

1029.76

1030.01

1028.76

1030.26

1029.26

1029.01

1029.51

1029.75

1030.01

1028.771030.25

NL: 1.51E4hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.08E4hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0321.0311.0301.029

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 185: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1050 1051 1052 1053 1054 1055 1056 1057m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1054.03

1053.781054.53

1054.78

1053.53

1055.02

1055.271050.27 1051.02 1056.221054.03

1054.28

1053.78

1054.52

1054.78

1053.53

1055.02

NL: 2.46E4hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.68E4hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0561.0551.0541.053

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 186: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1076.0 1076.5 1077.0 1077.5 1078.0 1078.5 1079.0 1079.5 1080.0 1080.5 1081.0 1081.5m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1078.791079.04

1078.54

1079.29

1079.54

1078.29

1079.79

1080.03

1078.79

1079.04

1079.291078.54

1079.54

1078.29

1079.80

1080.02

NL: 2.29E4hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.34E4hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.0821.0811.0801.0791.078

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 187: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1103 1104 1105 1106 1107 1108 1109 1110 1111 1112m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1107.33

1107.06

1107.591106.81 1112.381108.03

1109.18 1111.68

1112.001106.57 1109.671108.931108.37

1105.661104.651103.66 1111.431109.93

1107.34

1107.05

1108.031112.37

1107.67

1111.681106.82

1109.42 1112.01

1108.671108.37

1111.381104.66 1109.661106.621103.67 1111.171105.94 1110.66

NL: 1.41E4hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 1.10E4hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.1101.1091.1081.1071.106

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 188: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1159 1160 1161 1162 1163 1164 1165m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1162.561162.89

1163.23

1162.24

1163.56

1163.90

1162.89

1162.56

1163.23

1163.56

1162.24

1163.90

NL: 6.50E3hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 4.05E3hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.1661.1651.1641.1631.162

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 189: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1197 1198 1199 1200 1201 1202 1203 1204m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1200.59

1200.921200.26

1199.931201.25

1201.59

1201.93 1202.28

1200.591200.26

1200.92

1199.92 1201.26

1201.58

1203.88

NL: 1.12E4hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 6.58E3hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.2041.2031.2021.2011.200

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 190: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1257.29

1256.961257.62

1257.951256.63

1258.29

1258.63

1256.96

1257.29

1257.63

1257.96

1256.63

1258.29

1258.62

NL: 9.79E3hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 6.40E3hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.2611.2601.2591.2581.2571.256

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 191: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1300.97

1301.301300.64

1301.64

1300.31

1301.97

1300.97

1300.64 1301.31

1301.64

1300.31

1301.96

NL: 7.39E3hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 6.18E3hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3041.3031.3021.3011.300

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 192: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1330 1331 1332 1333 1334 1335 1336 1337 1338m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1334.00

1334.33

1333.66

1334.66

1335.00

1333.33

1335.671335.34

1335.99

1333.99

1334.33

1333.66

1334.66

1333.33 1334.99

NL: 1.01E4hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 6.00E3hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3371.3361.3351.3341.333

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 193: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1369 1370 1371 1372 1373 1374 1375 1376 1377 1378m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1372.34

1372.01

1371.68

1372.68

1373.011371.34

1372.01

1372.34

1372.671371.67

1373.001371.34

NL: 4.90E3hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 2.64E3hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.3751.3741.3731.3721.371

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical

Page 194: Chromatograms for summed and individual 15 transitions of 6 patient samples

CSF 1617 ([email protected])D:\Xcalibur\...\hu_23aug2013_qx15 Cal X1 (HFIP) 2000pg/mlProSwift RP-4H No.066640 SN: 001145 Lot: 017-13-003 8/23/2013 4:53:58 PMD:\Xcalibur\methods\d_apr2013\d_02apr2013_betaamyloid_MRM_TV2008 V0_2.meth

1400 1401 1402 1403 1404 1405 1406 1407 1408 1409 1410m/z

0

10

20

30

40

50

60

70

80

90

1000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e Ab

unda

nce

1405.03

1405.37

1404.701405.71

1406.041404.36

1406.37

1405.03

1404.70

1405.36

1405.69

1404.371406.03

1406.36

NL: 7.54E3hu_23aug2013_qx15#837-865 RT: 6.17-6.31 AV: 10 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

NL: 4.57E3hu_23aug2013_qx30#860-887 RT: 6.29-6.41 AV: 9 F: FTMS + p ESI Full ms2 [email protected] [266.00-4000.00]

Unregistered

1.4081.4071.4061.4051.404

100

90

80

70

60

50

40

30

20

10

0

Standard

CSF 1617theoretical