update on rotavirus and update on rotavirus and other ... · other viral causes of acute...

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1 Update on Rotavirus and Other Viral Causes of Acute Gastroenteritis Pete Shult, PhD. Director , Communicable Disease Division WISCONSIN STATE LABORATORY OF HYGIENE WISCONSIN STATE LABORATORY OF HYGIENE 1 and Emergency Response Erik Reisdorf, MPH, M (ASCP) CM Team Leader, Virology Laboratory WCLN Audioconference January 26, 2011 Update on Rotavirus and Other Viral Causes of Acute Gastroenteritis -Objectives- Updated information about norovirus and rotavirus Public health impact of rotavirus i ti Source: www.highlighthealth.com Source: www.highlighthealth.com WISCONSIN STATE LABORATORY OF HYGIENE WISCONSIN STATE LABORATORY OF HYGIENE vaccination program Current epidemiological trends Importance of public health surveillance systems 2 Global Impact of Gastroenteritis (Diarrheal Diseases) www.who.int/vaccine_research/diseases/diarrhoeal/en/print.html WISCONSIN STATE LABORATORY OF HYGIENE WISCONSIN STATE LABORATORY OF HYGIENE 3 United States Impact of Gastroenteritis • Estimates of foodborne illness in the U.S. http://www.cdc.gov/foodborneburden/index.html – Each year: • 48million people (1 in 6) get sick WISCONSIN STATE LABORATORY OF HYGIENE WISCONSIN STATE LABORATORY OF HYGIENE • 128,000 hospitalized • 3000 die – Estimates can be compounded by community spread • Only the common cold reported more often than GE of all cases 4 FOODBORNE GASTROENTERITIS www.cdc.gov/ncidod/dbmd/diseaseinfo/foodborneinfections_g.htm Bacterial Agents Campylobacter spp. Salmonella spp. E. coli STEC, ETEC, Other Shigella spp. S. aureus C. perfringens Viral Agents Norovirus Hepatitis A Rotavirus Sapovirus Astrovirus WISCONSIN STATE LABORATORY OF HYGIENE WISCONSIN STATE LABORATORY OF HYGIENE 5 C. perfringens C. botulinum L. monocytogenes V. cholerae V. parahemolyticus V. vulnificus Vibrio spp. B. cereus Y.enterocolitica Strep spp., Grp A Brucella spp. Astrovirus Other ??? Protozoan Agents Giardia intestinalis Cryptosporidium parvum Cyclospora cayatenensis Toxoplasma gondii Trichinella spp Noroviruses 2011 http://www.cdc.gov/ncidod/dvrd/revb/gastro/norovirus.htm New Engl J Med 2009;361:1776-85 A nasty bug and getting nastier – New pandemic strain identified – Immunity strain-specific and non-enduring WISCONSIN STATE LABORATORY OF HYGIENE WISCONSIN STATE LABORATORY OF HYGIENE 6 – Highly contagious; environmentally stable – Food-borne and community-acquired Targets restaurants, schools, chronic care facilities, and cruise ships Critical need for personal hygiene!

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Page 1: Update on Rotavirus and Update on Rotavirus and Other ... · Other Viral Causes of Acute Gastroenteritis Pete Shult, PhD. Director, Communicable Disease Division WISCONSIN STATE LABORATORY

1

Update on Rotavirus and Other Viral Causes of Acute Gastroenteritis

Pete Shult, PhD.Director, Communicable Disease Division

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE 1

,and Emergency Response

Erik Reisdorf, MPH, M (ASCP)CM

Team Leader, Virology Laboratory

WCLN AudioconferenceJanuary 26, 2011

Update on Rotavirus and Other Viral Causes of Acute Gastroenteritis

-Objectives-

• Updated information about norovirus and rotavirus

• Public health impact of rotavirus i ti

Source: www.highlighthealth.comSource: www.highlighthealth.com

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

vaccination program• Current epidemiological trends • Importance of public health

surveillance systems

2

Global Impact of Gastroenteritis (Diarrheal Diseases)

www.who.int/vaccine_research/diseases/diarrhoeal/en/print.html

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

3

United States Impact of Gastroenteritis

• Estimates of foodborne illness in the U.S.http://www.cdc.gov/foodborneburden/index.html– Each year:

• 48million people (1 in 6) get sick

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

p p ( ) g• 128,000 hospitalized• 3000 die

– Estimates can be compounded by community spread

• Only the common cold reported more often than GE of all cases

4

FOODBORNE GASTROENTERITISwww.cdc.gov/ncidod/dbmd/diseaseinfo/foodborneinfections_g.htm

Bacterial Agents• Campylobacter spp.• Salmonella spp.• E. coli STEC, ETEC, Other• Shigella spp.• S. aureus• C. perfringens

Viral Agents• Norovirus • Hepatitis A• Rotavirus• Sapovirus• Astrovirus

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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C. perfringens• C. botulinum• L. monocytogenes• V. cholerae• V. parahemolyticus• V. vulnificus• Vibrio spp.• B. cereus• Y.enterocolitica• Strep spp., Grp A• Brucella spp.

• Astrovirus• Other ???

Protozoan Agents• Giardia intestinalis• Cryptosporidium parvum• Cyclospora cayatenensis• Toxoplasma gondii• Trichinella spp

Noroviruses 2011http://www.cdc.gov/ncidod/dvrd/revb/gastro/norovirus.htmNew Engl J Med 2009;361:1776-85

A nasty bug and getting nastier– New pandemic strain

identified– Immunity strain-specific

and non-enduring

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

6

g– Highly contagious;

environmentally stable– Food-borne and

community-acquired– Targets restaurants,

schools, chronic care facilities, and cruise ships

– Critical need for personal hygiene!

Page 2: Update on Rotavirus and Update on Rotavirus and Other ... · Other Viral Causes of Acute Gastroenteritis Pete Shult, PhD. Director, Communicable Disease Division WISCONSIN STATE LABORATORY

2

NorovirusVirology

• Family Caliciviridae----ssRNA, non-enveloped, 26-34nm viruses

• 4 genera:– Lagovirus– Vesivirus– Sapovirus

Norovirus

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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– Norovirus• 5 genogroups

– GI, GII, GIV---humans– GIII---pigs and cows– GV---mice

• ≥ 25 genotypes (genetic clusters)• Ongoing emergence (drift) resulting

in strains among genotypes• GII.4 strains currently predominate

worldwide

NorovirusAntigenic Diversity

GIIGII--3 Toro3 Toro

GIIGII--14 M714 M7

BlakemoreBlakemore

GIGI--7 Winchester7 Winchester

GIGI--8 Boxer8 Boxer

GIGI--3b 3b StavangerStavanger

GIGI--3 DSV3 DSV

GIGI--6 Hesse6 Hesse

318/S05/95318/S05/95GIGI--5 Musgrove5 Musgrove

MaltaMaltaGIGI--4 Chiba4 Chiba

WhiteRoseWhiteRoseGIGI--2 Southampton2 Southampton

KY89KY89GIGI--1 Norwalk1 Norwalk

LordsdaleLordsdaleGIIGII--4 Bristol4 Bristol

GIIGII--17 CSE17 CSE

Kashiwa47Kashiwa47GIIGII--13 Fay13 Fay

GIIGII--10 Erfurt10 Erfurt290/White290/White

GIIGII--5 Hillingdon5 Hillingdon

GIIGII--2 Melksham2 MelkshamSnow MountainSnow Mountain

GIIGII--16 Tiffin16 TiffinGIIGII--12 Wortley12 Wortley314/S19/94314/S19/94GIIGII--1 Hawaii1 HawaiiGirlingtonGirlington

GI: humanGI: humanGII: humanGII: human

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

80.10.1

GIIGII--8 8 AmsterdamAmsterdam

GIIGII--9 VABeach9 VABeachGwyneddGwynedd

GIIGII--7 Leeds7 Leeds274/S07/93274/S07/93

GIIGII--6 Seacroft6 Seacroft

GIIGII--18 SWQ18 SWQGIIGII--19 SWQ19 SWQLimburgLimburg

GIIGII--11 SW911 SW9

GIVGIV--1 Alphatron1 Alphatron

Fort LauderdaleFort Lauderdale

GV MNVGV MNV--11

GIIIGIII--1 Jena1 Jena

GIIIGIII--1 CH1261 CH126

NewburyNewbury

Vinje et al. (2009)Vinje et al. (2009)

NorovirusClinical Features

• Incubation period----10-51hr• Duration of illness---24-72 hours• Clinical effects across the age spectrum

– Acute onset of nausea and cramping– Vomiting (more prevalent among children) and

d t di h ( l t

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

9

moderate diarrhea (more prevalent among adults) are hallmarks

– Low-grade fever in up to 50% of cases– Variable constitutional symptoms (e.g., chills,

malaise, headache, myalgia)• Dehydration is most common complication

– May require i.v. replacement fluids• Most patients recover without incident;

fatalities rare

NorovirusPathogenesis and Immunity

• Exact mechanism of diarrhea and vomiting unknown• Observation: asymptomatic infection may occur in

30% of infections– Susceptibility to infection and illness severity

genetically determinedLi k t ABH hi t bl d ti

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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• Link to ABH histo-blood group antigens– Role for asymptomatics in transmission?

• Recent GII.4 strains cause more severe disease – More intense symptoms, more fever, longer illness

duration (3-4d); greater transmissability• Immunity strain-specific, but short-lived (months?)

– Re-infection common

NorovirusEpidemiology(I)

Reservoir• Humans are only known reservoir for human infectionModes of Transmission• High levels of virus found in stool and vomit

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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High levels of virus found in stool and vomit• Transmission via:

– Food – Water– Direct person-to-person contact

• 2° and 3° cases following point-source outbreak– Contact with contaminated object or surface– Airborne via aerosolization of vomitus

NorovirusEpidemiology(II)

Characteristics That Facilitate Spread:• Low infectious dose (<10-100 viral particles)• Prolonged (up to 4w or more) viral shedding even

in asymptomatic (>90%)– Increased risk from infected food handlers

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– Viral shedding vs. infectivity• Environmental stability and persistence

• Survives:–up to10 ppm chlorine–freezing–up to 60°C–use of many routine disinfectants

Page 3: Update on Rotavirus and Update on Rotavirus and Other ... · Other Viral Causes of Acute Gastroenteritis Pete Shult, PhD. Director, Communicable Disease Division WISCONSIN STATE LABORATORY

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NorovirusTransmissibility

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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MMWR (2007) MMWR (2007) NorovirusNorovirus Outbreak Associated with Ill FoodOutbreak Associated with Ill Food--Service Workers Service Workers ------ Michigan, JanuaryMichigan, January----February 2006 56(46). February 2006 56(46).

Outbreaks of Acute GastroenteritisSettings in the U.S.- 2006

Setting Number of Outbreaks

Cruise ships 37

Long-term care facilities 37

Restaurants 13

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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Restaurants 13

Hospitals 7

Colleges 3

Parties 3

Other:Schools,daycare,etc. 26

Total 126

NorovirusEpidemiology (III) - Seasonality

FBO by Month (1998-2007)

14161820

aks

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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02468

1012

Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec

No

. ou

tbre

a

Bacterial Viral

Source: WI Dept. of Public Health

NorovirusPrevention and Control

Prospects for a vaccine• The clinical and public health motivation is

present• Significant obstacles

– Is morbidity /mortality severe enough?

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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Is morbidity /mortality severe enough?– Lack of in vitro propagation methods– Lack of long-term protective immunity

• A local infection– Antigenic diversity:

• multiple genotypes, strains• “influenza-like” drift• Pandemic-like global spread of new strains

NorovirusPrevention and Control

Recommended Measures• Practice good hand hygiene• Aggressive disinfection of contaminated

surfaces

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

17

surfaces• Do not return to work or school until 24-

72h after symptoms resolve– Particularly important with food handlers

• Aggressive measures for outbreak control in healthcare and LTCFs

Rotaviruswww.cdc.gov/rotavirus/index.html

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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Page 4: Update on Rotavirus and Update on Rotavirus and Other ... · Other Viral Causes of Acute Gastroenteritis Pete Shult, PhD. Director, Communicable Disease Division WISCONSIN STATE LABORATORY

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ROTAVIRUSPublic Health Importance

• Most important cause of severe, dehydrating GE in children <5y in all socioeconomic groups in all regions of the world

• Responsible for ~ 6% of all mortality in children < 5y

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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– Mortality predominately in developing world

• > 500,000 deaths annually; >2,000,000 hospitalized

• Malnutrition, less access to Rx, synergy with other pathogens

• However, the story is changing

Mortality Rate per 100,000 Child Deaths due to Rotavirus Disease

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

20

The boundaries and names shown and the designations used on this map do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. WHO 2009. All rights reserved100 to 500 deaths per 100,000

50 to 100 deaths per 100,000

10 to 50 deaths per 100,000

< 10 deaths per 100,000

Source: WHO/IVB database, 193 WHO Member States. Data as of July 2009Date of slide: September 2009

RotavirusVirology

• Family: Reoviridae– dsRNA, 11 segments, non-enveloped

• 7 serogroups A G; only A B C infect

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

• 7 serogroups A-G; only A, B, C infect humans

• Many serotypes within serogroup A– 4 responsible for 90% of pediatric cases

worldwide. However…– Serotype prevalence varies geographically– Reassortment and antigenic drift occur

21

RotavirusClinical Features

• Incubation period----24-72 h• Duration of illness---- 3 to 8d• Most severe illness in infants 6m – 2yrs

F iti di h

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

– Fever, vomiting, diarrhea– Dehydration with severe electrolyte

abnormalities

• Exacerbating factors: malnutrition, immunodeficiency & poor sanitation

• Decrease in illness severity with age22

RotavirusPathogenesis and Immunity

• Mechanisms of diarrhea and vomiting complex and incompletely understood

• As many as 50% infections subclinical

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

• Complex immune response– Innate, cellular, and humoral mechanisms

– Re-infections common throughout life; succeeding illnesses milder

• This is the case even if initial infections asymptomatic

23

RotavirusEpidemiology

• Human reservoir• Transmission: person-to-person

– fecal - oral; very rarely waterborne, foodborne

– respiratory?

Ch i i h f ili d

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

• Characteristics that facilitate spread– Virus shed in very large amounts; prolonged shedding

– Small infectious dose

– Environmental stability

• Seasonality (“back in the day”)– Marked Winter-Spring peak in temperate climates

•24

Page 5: Update on Rotavirus and Update on Rotavirus and Other ... · Other Viral Causes of Acute Gastroenteritis Pete Shult, PhD. Director, Communicable Disease Division WISCONSIN STATE LABORATORY

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ROTAVIRUSPrevention and control

• Vaccine represents the most promising public health control measure– Natural infection provides protection against

disease

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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disease

– Treatments not readily available

– Transmission unaffected by improvements in sanitation and hygiene

– Cost effective

RotavirusVaccines• RotaTeq®

– Pentavalent vaccine containing G1, G2, G3, G4, P[8]

– Licensed by FDA in 2006

– ACIP recommendations in 2006

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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ACIP recommendations in 2006

• Rotarix®– Monovalent contains genotype

G1P[8]

– Relies on heterotypic immunity

– Licensed by FDA in 2008

– Widely used in Brazil

RotavirusVaccines

• Uptake nationally: >70% in 6 of 8 states (MMWR, 2010).

• Uptake in WI: 80% had

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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received at least one dose of vaccine (MMWR, 2010).

FIGURE. Percentage of rotavirus tests with positive results, by surveillance week --- participating laboratories, National Respiratory and Enteric Virus Surveillance System (NREVSS),

United States, July 2000--June 2009*

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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MMWR, Oct 23, 2009/ 58(41);1146MMWR, Oct 23, 2009/ 58(41);1146

Weekly rotavirus admissions (ICD9=008.61) to Wisconsin hospitals, Jul 1992 - Jun 2008

60

70

80

90

ns

2500

3000

3500

ICD9 008.61 introduced 1992

Rotashield Sep 98 - Jul 99

RotaTeqFeb 06 -

Early Returns in the Wisconsin are Promising As Well (I)

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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0

10

20

30

40

50

60

Jul-92

Jan-93

Jul-93

Jan-94

Jul-94

Jan-95

Jul-95

Jan-96

Jul-96

Jan-97

Jul-97

Jan-98

Jul-98

Jan-99

Jul-99

Jan-00

Jul-00

Jan-01

Jul-01

Jan-02

Jul-02

Jan-03

Jul-03

Jan-04

Jul-04

Jan-05

Jul-05

Jan-06

Jul-06

Jan-07

Jul-07

Jan-08

Jul-08

Week of admission

Nu

mb

er o

f h

osp

ital

iza

tio

n

0

500

1000

1500

2000

Early Returns in the Wisconsin are Promising As Well (II)

Number of Specimens Tested and Positive for Rotaby Wisconsin Antigen Detection Sites

200

250

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

30

0

50

100

150

7/3/

04

9/25

/04

12/1

8/0

43/

12/0

56/

4/0

58/

27/0

511

/19

/05

2/11

/06

5/6/

06

7/29

/06

10/2

1/0

61/

13/0

74/

7/0

76/

30/0

79/

22/0

712

/15

/07

3/8/

08

5/31

/08

8/23

/08

11/1

5/0

82/

7/0

95/

2/0

97/

25/0

910

/17

/09

1/9/

10

Nu

mb

er

No. Positive for Rota No. Rota Tested

Page 6: Update on Rotavirus and Update on Rotavirus and Other ... · Other Viral Causes of Acute Gastroenteritis Pete Shult, PhD. Director, Communicable Disease Division WISCONSIN STATE LABORATORY

6

Countries Using Rotavirus Vaccine in National Immunization Schedule, 2008

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

31Source: WHO/IVB database, 193 WHO Member States. Data as of July 2009. 2009 data is provisionalDate of slide: September 2009

The boundaries and names shown and the designations used on this map do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. © WHO 2009. All rights reserved

No (170 countries or 88% of countries)

Yes (17 countries or 9% of countries)

Yes (Part of the country) (2 countries or 1% of countries)

Introduction in 2009 (6 countries or 3% countries)

Yes (Risk groups) (1 country or 0.5% of countries)

In 2008,Peru and South Africa had introduced in parts of the country and Colombia for risk groups

Rotavirus VaccinesProspects for Global Success

Recent successes: 2006-07 – Mexico – Africa

Anticipated challenges– How reproducible are results in other countries

St d hi t i t

N Engl J Med N Engl J Med 362362;;4 14 1//2828//1010

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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– Storage and shipment requirements– Narrow window for vaccine administration*

• 1st dose between 6-15 weeks and 3rd dose no later than 32 weeks

– Cost of vaccine in the U.S.– Past experience with oral vaccines in developing countries– Antigenically changeable virus - will immunization drive

evolution?• Need to maintain/expand surveillance

Norovirus vs. RotavirusAn interesting public health comparison

One on the risevs.

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

vs.One on the decline

Norovirus:Laboratory methods

• Cell culture• RT-PCRHigh sensitivity, specificity, throughput,

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

g y p y g psame day results.

Limitations: Infectious virus, inhibitors

• EIASensitivity =55% compared with RT-PCR

(Moe, 2004).Specificity =83 to 96% (Gray, et al., 2007)

34

Norovirus:National Surveillance

• CaliciNet17 states certified March 2010Wisconsin one of 5 SPHL selected Specimens received from 3 Midwest statesSeq ences deposited in national database

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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Sequences deposited in national databaseObjectives:Improve surveillance Real-time data exchangeLinking clusters of illnessMonitor for emerging strains

CaliciNet: Geographical representation

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

36

Courtesy of CDC National Calicivirus Laboratory

Page 7: Update on Rotavirus and Update on Rotavirus and Other ... · Other Viral Causes of Acute Gastroenteritis Pete Shult, PhD. Director, Communicable Disease Division WISCONSIN STATE LABORATORY

7

Norovirus diversity

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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Courtesy of CDC National Calicivirus Laboratory

Norovirus WI Surveillance

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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Courtesy of Wisconsin Division of Public Health Bureau of Communicable Disease

Norovirus WI Surveillance

• Wisconsin strain surveillance

6%5%

Norovirus genotypes in WI Sept. 2009-May 2010

Norovirus genotypes in WISept. 2010- Jan. 2011

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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6%

35%

5%8%

3%3%

35%

5% GI.3B

GII.12

GI.4

GI.6

GII.3

GII.4_Minerva

GII.4_NewOrleans

4% 6% 2%7%

4%

65%

2% 4% 6% GI.1

GI.4

G1.7

GII.2

GII.4_Minerva

GII.4_NewOrleans

GII.4_Osaka

GII.6

NorovirusEpidemiology

PANDEMICs occur every 2-4 years!

Emergence of novel GII.4Possess different epidemiological profile

Attack rateSource: www.stuffwelike.com/.../2009/11/Pandemic.jpg

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

Vomiting & diarrheaDuration of illness

2002 GII.4_Farmington Hills 2006 GII.4_Minerva

WDPH investigated 106 AGE v. 23 in 2005!

2010 GII.4_New OrleansWDPH investigated 37 outbreaks in

December 2010!

40

Norovirus Summary

• Genetically diverse• Antigenic drift• GII.4 pandemic potential

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

G pa de c pote t a• National and community impact

uncertain• Vaccine faces many challenges• Knowledge base continues to expand

41

RotavirusLaboratory methods

• EIA* Sensitivity >90%– BioRad Pathfinder, Vidas, Rotaclone,

etc…

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

Limitations:NPV high

PPV low

GrpA specific

• RT-PCR• Sequencing

42

Page 8: Update on Rotavirus and Update on Rotavirus and Other ... · Other Viral Causes of Acute Gastroenteritis Pete Shult, PhD. Director, Communicable Disease Division WISCONSIN STATE LABORATORY

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Rotavirus Molecular Epidemiology

• US Rotavirus strain surveillance data: 2005-2008 (Hull et al., 2011)

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

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Year Genotypes

2005-2006 G1 predominate

2006-2007 G1 predominate

2007-2008 G1 & G3 predominate, G2, G9

Rotavirus vaccine: Impact on strain diversity and age distribution

• Key findings (Hull J et al., 2011)– Reports from Brazil & Australia described

changes in genotype prevalence post-vaccine

– US: G3 emerged as predominate rotavirus

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

genotype in some sentinel sites (2007-2008)

– G3 predominated in states primarily using RotaTeq® (natural fluctuation vs. vaccine driven)

– Mean age of rotavirus patients increased from • 13 to17.8 months in 2007-2008.

Is diversity natural fluctuation or vaccine driven??

44

Rotavirus surveillance--Wisconsin

• Collaboration between CDC/WSLH/WI Clinical Laboratories

• Aim is to assist CDC with national

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

strain surveillanceMonitor for emerging strains

Change in genotype prevalence

Ensure vaccines are effective

45

Rotavirus specimen submission

• Please send ALLrotavirus positive specimens to WSLH

• NO cost for shipping if using Dunham

Patient Information Submitter InformationName (Last, First): (Your Institution’s Agency Number If Known)

Address: (Your Institution’s Name)

City: State: Zip:

(Your Institution’s Address)

Age or Date of Birth: (City, State, Zip Code)

Gender: M F (Telephone Number)

Patient Telephone Number: Health Care Provider Full Name:

Your Specimen ID Number (optional):

WSLH Use Only: VI ROTA CDC / Bill To: Account # 74201

Date Collected: Specimen Type:

[ ] Raw Stool

SAMPLE: Rotavirus Surveillance Requisition Form [rev. 11/2010]

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

using Dunham• Specimens can be sent

weekly (refrigerated)• Sent with Flu

surveillance specimens• Raw stool or VTM

acceptable46

[ ] Raw Stool

[ ] Other (specify):_________________________Onset Date:

Vaccination History:A. Was the patient vaccinated for rotavirus? [ ] Yes [ ] No [ ] UnknownB. What date was the patient vaccinated: ________________(MM/DD/YR) [ ] UnknownC. Which vaccine was used? [ ] RotaTeq® [ ] Rotarix® [ ] Unknown

Your Test Results

[ ] Positive Rotavirus[ ] Negative Rotavirus

[ ] Other (specify):_________________________

Please mark the test used: Antigen Detection[ ] BioMerieux Vidas/Mini [ ] ImmunoCard STAT![ ] Xpect Rotavirus [ ] Premier Rotaclone

[ ] Sure Vue Rotavirus [ ] Pathfinder Rotavirus EIA[ ] Murex Rotavirus[ ] SAS Rota [ ] Other (specify): _______________________

WISCONSIN STATE LABORATORY OF HYGIENE USE ONLY

WSLH Test Code: 3222

Rotavirus Summary

• Diverse genome• Vaccine impact on morbidity & prevalence• Vaccine impact on strain evolution

( t G&P i l d d i i )

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(genotypes G&P included in vaccine)– Brazil and US noted a shift in prevalence of

other genotypes following vaccination (Gentsch et al., 2009). Natural fluctuation or vaccine driven?

– Importance of monitoring viral genotype prevalence.

Future Concerns

• Monitoring for emerging strains of norovirusand rotavirus.

• No national surveillance system for norovirus– Difficult to assess public health impact

E f i

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• Emergence of sapovirus– Studies have concluded that sapovirus infections

are increasing in Europe (Svraka et al., 2010).

• What is the significance of other viral etiologies? – Adenovirus 40/41, astrovirus, sapovirus, unknown

Page 9: Update on Rotavirus and Update on Rotavirus and Other ... · Other Viral Causes of Acute Gastroenteritis Pete Shult, PhD. Director, Communicable Disease Division WISCONSIN STATE LABORATORY

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Diagnostic gap

• What role do viruses other than norovirus play in outbreaks and AGE morbidity in the US? Etiologies unknown in 12-41% of outbreaks (Lyman et al.,

2009 & Finkbeiner et al., 2009).

d

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• WI NFBO investigation data:

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Year NV Unknown % Other

2006 61 11 15.3

2007 41 12 22.6

2008 90 5 5.3

2009 102 21 17.1 Sapovirus

2010 110 27 19.7Courtesy of John Archer WI Division of Public Health (2010)

References

Atmar, R et al. (2008) Norwalk virus shedding after experimental human infection. Emerg Infect Dis. Oct;14(10):1553-7.

Bull et al. (2010) Rapid evolution of pandemic noroviruses of the GII.4 lineage PLOSpathogens 6(3). Cunliffe, N et al. (2010) Healthcare-associated viral GE among children in a large pediatric hospital, UK EID 16(1): 55-62.

Curns et al. (2010) Reduction in acute GE hospitalizations… JID 201: 1617-1624. Finkbeiner, S et al. (2009) ID of a novel astrovirus (vA1) associated with an outbreak of acute GE J Virology 10836-10839. Gentsch et al. (2009) Impact of rotavirus vaccination: The importance of monitoring strains Future Microbiology 4(10):

1231-1234. Gentsch J et al. (2009) G & P types of circulating rotavirus strains in the US during 1996-2005: Nine years of prevaccine

data JID 200(Sup1): S99-S105 Glass et al. (2009) Norovirus gastroenteritis NEJM 361(18): 1776-1785. Glass, RI, Bresee, J, Jiang, B, et al. Gastroenteritis viruses: an overview. Novartis Found Symp 2001; 238:5. Gray et al. (2007) European Multicenter Evaluation of Commercial Enzyme Immunoassays for Detecting Norovirus Antigen in

Fecal Samples Clin Vaccine Immunol. October; 14(10): 1349–1355

WISCONSIN STATE LABORATORY OF HYGIENEWISCONSIN STATE LABORATORY OF HYGIENE

p ( ) Hull J et al., (2011) US rotavirus strain surveillance from 2005-2008 Pediatric Infectious Disease 30(1). Lyman, W et al. (2009) Prospective study of etiological agents of acute gastroenteritis outbreaks in child care centers J

Pediatrics 154: 253-257. KSU (2010) Norovirus fact sheet Available at:

http://www.google.com/imgres?imgurl=http://nabc.ksu.edu/images/uploads/norovirus.jpg&imgrefurl=http://nabc.ksu.edu/content/factsheets/category/Norovirus&usg=__5Mwv9Zdsn2Eep5IhTzJ6W-DSGEU=&h=547&w=737&sz=144&hl=en&start=1&zoom=1&um=1&itbs=1&tbnid=3FUyu_mh-ODurM:&tbnh=105&tbnw=141&prev=/images%3Fq%3Dnorovirus%26um%3D1%26hl%3Den%26sa%3DN%26tbs%3Disch:1 Accessed on: 19 August 2010.

MMWR (2010) Rotavirus vaccination coverage among infants… 59(17) 521-524. Moe et al. (2004) Diagnosis of Norwalk Virus Infection by Indirect Enzyme Immunoassay Detection of Salivary Antibodiess to

Recombinant Virus Antigen. Clin Diag Lab Immun Nov; 11(6) 1028-34. Richman et al. (2009) Clinical Virology 3rd edition ASM Press. Rosenthal, NA et al. (2011) Epidemiological and genetic characteristics of norovirus outbreaks in long-term care facilities,

2003-2006 Epidem Inf 139: 286-294. Svraka et al. (2010) Epidemiology and genotype analysis of emerging sapovirus-associated infections across Europe JCM

48(6): 2191-2198. Valazquez et al. (1996) Rotavirus infection in infants as protection against subsequent infections NEJM 335: 1022-1028. Vinje, J (2009) CDC: Norovirus presentation. Vinje J(2010) A norovirus vaccine on the horizon? JID 202(1): 1623-1625.

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