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© 2016 Optibrium Ltd. Optibrium™, StarDrop™, and Card View™ are trademarks of Optibrium Ltd. BioSolveIT™ and SeeSAR™ are trademarks of BioSolveIT GmbH Webinar. 4:00 GMT, April 6 th 2016 Marcus Gastreich and Nick Foster [email protected] and [email protected] The Magic Behind SeeSAR: Visual, Interactive 3D Lead Optimisation for Anyone

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Page 1: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

© 2016 Optibrium Ltd.Optibrium™, StarDrop™, and Card View™ are trademarks of Optibrium Ltd. BioSolveIT™ and SeeSAR™ are trademarks of BioSolveIT GmbH

Webinar. 4:00 GMT, April 6th 2016Marcus Gastreich and Nick Foster

[email protected] and [email protected]

The Magic Behind SeeSAR: Visual, Interactive 3D Lead Optimisation for Anyone

Page 2: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 3: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 4: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 5: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 6: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 7: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

n

Page 8: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 9: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

D D

Page 10: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

D D

unbound,

in waterbound,

in complex

Page 11: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

Page 12: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

∆G = f (logP,T)

logPi

Page 13: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 14: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

1n2v

ΔGexperimental -23kJ/mol

RMSD 2.3 Å

ΔGHYDE -12 kJ/mol

Best by scoring

RMSD 0.2 Å

ΔGHYDE -23 kJ/mol

tRNA-Guanine Transglycosylase

Page 15: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 16: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 17: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 18: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 19: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

Exp Ki 2500 nM Exp Ki 12 nM

PDB 3IPH (p38 Kinase)

Page 20: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

Exp Ki 2500 nM Exp Ki 12 nM

Page 21: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 22: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 23: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 24: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 25: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 26: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 27: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening
Page 28: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

S:

Page 29: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

StarDrop™ including SeeSAR™Estimated release Q2 2016

Page 30: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

© 2016 Optibrium Ltd.

• BioSolveIT’s platform for structure-based design on chemists’ desktops

• Applications include:

− Crystal structure elucidation

− Compound prioritization

− Lead optimization and SAR exploration

− Binding mode prediction

− Virtual Screening

• StarDrop 6.3 will include a 3D structure viewer based on SeeSAR

Collaboration with BioSolveITIntegration of SeeSAR with StarDrop

Page 31: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

© 2016 Optibrium Ltd.

New SeeSAR ‘Viewer’ ModuleVisualise 3D structure information

Import docking results or crystal structures, from SD/PDB files

Include docking scores or affinity predictions in MPO

Select between multiple poses

Page 32: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

© 2016 Optibrium Ltd.

New SeeSAR ‘Viewer’ ModuleVisualise 3D structure information

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Import docking results or crystal structures, from SD/PDB files

Include docking scores or affinity predictions in MPO

Select between multiple poses

Page 33: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

© 2016 Optibrium Ltd.

Linking 2D and 3D SAR AnalysesE.g. Activity Neighbourhood

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Page 34: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

© 2016 Optibrium Ltd.

Demonstration

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Page 35: The Magic Behind SeeSAR - optibrium.com Magic Behind SeeSAR: ... −Lead optimization and ... SAR exploration −Binding mode prediction −Virtual Screening

Questions and Answers