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2007VOLUME 7NUMBER 2
Peptide Synthesis
coupling reagents
new unnatural amino acids
new tools for peptide pegylation
fluorous peptide synthesis
Key intermediate stage during the -OAt-mediated coupling of two D-alanines
sigma-aldrich.com
IntroductionPeptides play a crucial role in fundamental physiological and biochemical functions of life. For decades now, peptide research is a continuously growing field of science. Sigma-Aldrich is proud of being able to meet all your needs in chemical peptide synthesis offering more than 2,600 products related to this field. You can obtain all the necessary tools for solution- and solid-phase peptide synthesis conveniently from a single source. You can choose between 2,100 natural and unnatural amino acid building blocks to design your peptide, and select the coupling method for the most efficient synthesis. Finally, you will find all required reagents for functionalization, manipulation and analysis of your products. This ChemFiles highlights a comprehensive listing of coupling reagents available through Sigma-Aldrich and introduces new, unnatural amino acid building blocks, tools for PEGylation, and products for fluorous-phase peptide synthesis and separation. For more information, and access to our complete range of chemistry products, visit our Web site at sigma-aldrich.com/gochem.
If you are unable to find a building block, reagent or any other product for your peptide synthesis projects, we welcome your request and will use it to broaden our product range even further. “Please Bother Us” with your suggestions at [email protected], or contact your local Sigma-Aldrich office (see back cover).
Intr
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Vol. 7 No. 2
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It’s Here! The NEW 2007–2008 Aldrich Handbook of Fine Chemicals
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About Our CoverThe cover graphic shows the key intermediate stage during the -OAt-mediated coupling of two D-alanines (for improved clarity Hydrogen atoms have been omitted and both amino acids are represented as their unprotected derivatives). The generated D-Ala-D-Ala dipeptide is the main recognition sequence for the powerful antibiotic vancomycin. During the coupling reaction the nucleophilic amino group of one D-alanine attacks the -OAt-activated carbonyl group of another D-alanine. In the process, the pyridine nitrogen of the -OAt-moiety accelerates the aminolysis of the active ester through intramolecular base catalysis. This neighbouring group effect explains the high efficiency of HOAt derived peptide coupling reagents like HATU.
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Ready to scale up? For competitive quotes on larger quantities or custom synthesis, contact SAFC™ at 1-800-244-117� (USA), or visit safcglobal.com.
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Coupling ReagentsIn principle, the seemingly simple formation of a peptide bond can be accomplished using all the procedures available in organic chemistry for the synthesis of carboxylic acid amides. However, due to the presence of various functional groups in natural and unnatural amino acids and particularly the requirement for full retention of chiral integrity, the coupling of amino acids and peptides under mild conditions can be challenging. A plethora of coupling reagents has been developed superseding each other in efficiency and suitability for specific applications (e.g., solid-phase peptide synthesis or fragment condensation).
H2NO
OR1
PG1HN
O
OPGO
R1ONH
PGNR2
2PG
PG1
OH
ONH
PGNR2
2PG
PGO peptide bond
Amino Acid I Amino Acid II Dipeptide
Activation Coupling
X
ONH
PGNR2
2PG
-HX
Scheme: Simplified general mechanism of peptide bond formation.
All coupling methods have the same reaction principle in common: after activation of the carboxy group of the first amino acid, the second amino acid can form the peptide bond by a nucleophilic attack of its amino group. In order to prevent uncontrolled peptide bond formation the amino group of the first amino acid and all functional side chain groups need to be reversibly blocked. Repeated de-blocking, activation, and coupling build the peptide to its desired final sequence.
A broad variety of coupling reagents available through Sigma-Aldrich will be presented and discussed. For further reading, detailed reviews are available.1,2
References: (1) Goodman, M. Methods of Org. Chem. (Houben-Weyl) add. and suppl. vol. to the 4th ed., Vol. E 22 a, 2002, pp. 425–888. (2) Han, S.-Y.; Kim, Y.-A. Tetrahedron 2002, 60, 2447.
Azide FormationAzide coupling procedures were introduced by Curtius as one of the first successful strategies for the synthesis of peptides. For a long time they were thought to be the only racemisation free method. A very convenient way to form N-acylamino acid azides is to apply DPPA (diphenyl phosphoryl azide). This method is particularly useful in cyclization reactions of peptides.1,2 DPPA can also be used in the preparation of urethanes by reaction with alcohols.
References: (1) Hoffmann, E.; Beck-Sickinger, A. G.; Jung, G. Liebigs Ann. Chem 1991, 585. (2) Yamada, T.; Omote, Y.; Nakamura, Y.; Miyazawa, T.; Kuwata, S. Chem. Lett. 199�, 1583.
Diphenyl phosphoryl azide, 97%DPPA(C6H5O)2P(O)N3
FW: 275.2[26386-88-9]
PO
OO
N3
178756-5G 5 g178756-25G 25 g178756-100G 100 g
Diphenyl phosphoryl azide, technical, >90%DPPA(C6H5O)2P(O)N3
FW: 275.2[26386-88-9]
PO
OO
N3
79627-10ML 10 mL79627-50ML 50 mL
Acid Halogenation ReagentsThe generation of an acid chloride is an obvious way to activate the carboxy group for amide bond formation. However, practical application of acid chlorides in peptide synthesis is restricted, because they are prone to side reactions and racemization. In spite of this disadvantage, acid chlorides are frequently recommended to link extremely hindered or achiral amino acids. 1-Chloro-N,N,2-trimethyl-1-propenylamine, developed by Ghosez, enables the conversion of carboxylic acids into the corresponding chlorides under strictly neutral conditions.1 This method was successfully applied by Fürstner in the total synthesis of Caloporoside and Roseophilin.2
The most notable advance in acid halogenation has been the introduction of fluoroamidinium salts by Carpino.3 Compared to the chlorides, the acid fluorides show greater stability towards water and a relative lack of conversion to the corresponding oxazolones upon treatment with organic bases. TFFH (Fluoro-N,N,N’,N’-tetramethylformamidinium hexafluorophosphate) and BTFFH (Fluoro-N,N,N’,N’-bis(tetramethylene)formamidinium hexafluorophosphate) are stable, non-hygroscopic salts. They act in situ as fluorinating reagents and are suitable both for solution syntheses and for SPPS (Solid-Phase Peptide Synthesis).
References: (1) Haveaux, B.; Dekoker, A.; Rens, M.; Sidani, A. R.; Toye, J.; Ghosez, K. Org. Synth. 1980, 59, 26. (2) Fürstner, A.; Konetzki, I. J. Org. Chem. 1998, 63, 3072. (3) Carpino, L. A.; El-Faham, A. J. J. Am. Chem. Soc. 1995, 117, 5401.
1-Chloro-N,N,2-trimethyl-1-propenylamine, 96%(CH3)2C=C(Cl)N(CH3)2FW: 133.62[26189-59-3] Cl
N
498270-5ML 5 mL
Chloro-N,N,N’,N’-bis(tetramethylene)formamidinium tetrafluoroborate, purum, >97.0% (AT)C9H16BClF4N2
FW: 274.49[115007-14-2]
N N+
Cl
BF4-
23957-1G-F 1 g23957-5G-F 5 g23957-25G-F 25 g
PyClU, purum, >98.0% (CHN)C9H16N2Cl · PF6
FW: 332.65[135540-11-3]
N N+
Cl
PF6-
23955-1G-F 1 g23955-5G-F 5 g23955-25G-F 25 g
Chloro-N,N,N’,N’-tetramethylformamidinium hexafluorophosphate, purum, >98.0% (T)C5H12ClF6N2PFW: 280.58[207915-99-9]
N N+
Cl
PF6-
09658-5G 5 g09658-25G 25 g
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Fluoro-N,N,N’,N’-tetramethylformamidinium hexafluorophosphate, 97%TFFH[FC[=N(CH3)2]N(CH3)2]PF6
FW: 264.12[164298-23-1]
N N+
F
PF6-
520330-1G 1 g520330-5G 5 g
PhosgenePhosgene is an extremely versatile reagent allowing easy access to isocyanates, ureas, carbamates, carbonates, acyl and alkyl chlorides.1 Many of these can be used as reactive intermediates in peptide coupling reactions. As a dehydrating agent, phosgene can also lead to isocyanides, cyanides, and carbodiimides. Though highly toxic itself byproducts resulting from reactions with phosgene are harmless. When treated with alkaline solution, only biocompatible salts are formed like sodium chloride or carbonate.
In cooperation with Buss ChemTech, Sigma-Aldrich offers a safe and reliable phosgene generation kit giving simple access to small quantities of high purity, gaseous phosgene exactly when needed, while no transport and storage of liquid phosgene is necessary. The generator converts safe triphosgene into phosgene on demand using a patented catalyst (licensed from “BUSS ChemTech AG” U.S. Patent 6,399,822 B1 and foreign equivalents apply).2 Phosgene generation can be stopped at any time. A total containment approach eliminates the risk that phosgene can reach the environment.
References: (1) Babad, H.; Zeiler, A. G. Chem. Rev. 197�, 73, 75. (2) Eckert, H.; Forster, B. Angew. Chem. Int. Ed. 1987, 26, 894.
Cartridge for Phosgene Generation, Starter Kit 8
Contains one 0.02 mole cartridge (519758), hose connector with sealing lips, Viton tubing, dosimeter badge, and instructions for use.
519782-1KT 1 Kit
Cartridge for Phosgene Generation, 0.02 mole 8COCl2FW: 98.92[75-44-5]
519758-1PAK 1 Pak519758-5PAK 5 Pak
Cartridge for Phosgene Generation, 0.05 mole 8COCl2FW: 98.92[75-44-5]
519766-1PAK 1 Pak519766-5PAK 5 Pak
Triphosgene, reagent grade, 98%Cl3COCOOCCl3FW: 296.75[32315-10-9] O
CO
OCl3C CCl3
330752-5G 5 g330752-25G 25 g330752-100G 100 g
Phosgene solution, purum, ~20% in tolueneCOCl2FW: 98.92[75-44-5] Cl
CCl
O
79380-100ML 100 mL79380-500ML 500 mL
Thiophosgene, 97%CSCl2FW: 114.98[463-71-8] Cl
CCl
S
115150-5G 5 g115150-25G 25 g115150-100G 100 g
Thiophosgene, technical, ~90%CSCl2FW: 114.98[463-71-8] Cl
CCl
S
89030-25ML 25 mL89030-100ML 100 mL
Fluoro-N,N,N’,N’-bis(tetramethylene)formamidinium hexafluorophosphate, >99.0%BTFFHC9H16F7N2PFW: 316.2[164298-25-3]
N N+
F
PF6-
17380-5G 5 g17380-25G 25 g
Application example for the Phosgene Generation Starter Kit 519782-1KT.
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CarbodiimidesCarbodiimide-mediated peptide coupling remains to the most frequently used technique. As a major advantage, carbodiimides do not require prior activation of the carboxylic acid. Dicyclohexylcarbodiimide (DCC) has been predominantly used and is now well established. Since the generated urea derivatives as byproducts often have similar solubilities as the desired peptides, water-soluble carbodiimides have been developed whose corresponding ureas are readily separated by extraction with water. The most popular carbodiimide of this kind is EDC (N-(3-Dimethylaminopropyl)-N’-ethylcarbodiimide). Furthermore EDC or EDAC allow peptide coupling in alcohol or aqueous solutions involving proteins or peptide cyclizations.1
In solid-phase peptide synthesis, diisopropylcarbodiimide (DIC) is especially helpful due to the enhanced solubility of its urea derivatives.
Reference: (1) Nozaki, S. J. Peptide Res. 1999, 54, 162.
N,N’-Dicyclohexylcarbodiimide, 99.0% DCCC6H11N=C=NC6H11
FW: 206.33[538-75-0]
NC
N
D80002-25G 25 gD80002-100G 100 gD80002-1KG 1 kgD80002-5KG 5 kgD80002-15KG 15 kg
N,N’-Dicyclohexylcarbodiimide solution, 1.0 M in methylene chlorideDCCC6H11N=C=NC6H11
FW: 206.33[538-75-0]
NC
N
379115-100ML 100 mL379115-800ML 800 mL
N,N’-Dicyclohexylcarbodiimide solution, purum, ~1 M in NMPDCCC6H11N=C=NC6H11
FW: 206.33[538-75-0]
NC
N
36651-100ML-F 100 mL36651-250ML-F 250 mL
WSC, N-(�-Dimethylaminopropyl)-N’-ethylcarbodiimide, purum, >97.0%EDC, WSCC8H17N3
FW: 155.24[1892-57-5]
NC
N NCH3
CH3H3C
39391-10ML 10 mL39391-50ML 50 mL
N-(�-Dimethylaminopropyl)-N’-ethylcarbodiimide, polymer-bound, 200–400 mesh, extent of labeling: 0.5–1.5 mmol/g loading, 2% cross-linked with divinylbenzeneEDC, WSC
NC
N NCH3
CH3H3C
424331-5G 5 g424331-25G 25 g
1-[�-(Dimethylamino)propyl]-�-ethylcarbodiimide methiodide EDC methiodideC2H5N=C=N(CH2)3N(CH3)3IFW: 297.18[22572-40-3]
NC
N N+H3C CH3
H3C CH3
I-
165344-1G 1 g165344-10G 10 g
N-(�-Dimethylaminopropyl)-N’-ethylcarbodiimide hydrochloride, BioChemika, >99.0%EDC hydrochloride, EDACC8H17N3 · HClFW: 191.7[25952-53-8]
NC
N NCH3
CH3H3C
HCl
03449-1G 1 g03449-5G 5 g03449-25G 25 g
N-(�-Dimethylaminopropyl)-N’-ethylcarbodiimide hydrochloride, purum, >98.0%EDC hydrochloride, EDACC8H17N3 · HClFW: 191.7[25952-53-8]
NC
N NCH3
CH3H3C
HCl
03450-1G 1 g03450-5G 5 g03450-25G 25 g
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N-(�-Dimethylaminopropyl)-N’-ethylcarbodiimide hydrochloride, commercial grade, powderEDC hydrochloride, EDACC8H17N3 · HClFW: 191.7[25952-53-8]
NC
N NCH3
CH3H3C
HCl
E7750-5G 5 gE7750-10G 10 gE7750-25G 25 gE7750-100G 100 gE7750-1KG 1 kgE7750-5KG 5 kg
N,N’-Diisopropylcarbodiimide, 99%DIC(CH3)2CHN=C=NCH(CH3)2
FW: 126.2[693-13-0]
NC
N
D125407-5G 5 gD125407-25G 25 gD125407-100G 100 gD125407-1KG 1 kgD125407-10KG 10 kg
1-tert-Butyl-�-ethylcarbodiimide, 99%BEC(CH3)3CN=C=NC2H5
FW: 126.2[1433-27-8]
NC
N
426393-1G 1 g426393-5G 5 g
N-Cyclohexyl-N’-(2-morpholinoethyl)carbodiimide metho-p-toluenesulfonate, puriss., >99.0% CMCC14H26N3O · C7H7O3SFW: 423.57[2491-17-0]
NC
NN+
O
CH3CH3-O3S
29469-5G 5 g29469-25G 25 g
N-Cyclohexyl-N’-(2-morpholinoethyl)carbodiimide metho-p-toluenesulfonate, 95%CMCC14H26N3O · C7H7O3SFW: 423.57[2491-17-0]
NC
NN+
O
CH3CH3-O3S
C106402-5G 5 gC106402-25G 25 g
N,N’-Di-tert-butylcarbodiimide, 99%(CH3)3CN=C=NC(CH3)3
FW: 154.25[691-24-7]
NC
N
235563-1G 1 g235563-5G 5 g
1,�-Di-p-tolylcarbodiimide, 96%CH3C6H4N=C=NC6H4CH3
FW: 222.29[726-42-1]
NC
N
H3C
CH3
D219800-1G 1 gD219800-5G 5 g
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Imidazolium Derived ReagentsN-Acylimidazoles were recognized in the early 1950s as reactive intermediates suitable for the acylation of amino compounds. The search for better coupling reagents than DCC led to the development of CDI (1,1’-carbonyldiimidazole) and related carbonylimidazoles.1 For practical considerations it should be noted that moisture must be carefully excluded during work with CDI. Also, CDI excess should be avoided. Apart from peptide synthesis, carbonyldiimazoles find use as an efficient replacement for highly toxic phosgene in the preparation of carbamates and ureas from alcohols and amines.2,3
Kiso developed modified imidazolium reagents like CIP (2-Chloro-1,3-dimethylimidazolidinium hexafluorophosphate) as new peptide coupling reagents and later as new esterification reagents to avoid the toxic HMPA by-product of the BOP reagent (benzotriazol-1-yloxytris(dimethylamino)phosphonium hexafluorophosphate).4 CIP was successfully applied to the coupling of a,a-dialkylated amino acids and proved to be especially efficient in combination with HOAt (1-hydroxy-7-azabenzotriazole).5
References: (1) Staab, H. A. Angew. Chem. Int. Ed. Engl. 1962, 1, 351. (2) Staab, H. A. Justus Liebigs Ann. Chem. 1957, 609, 83. (3) Staab, H. A. Justus Liebigs Ann. Chem. 1957, 609, 75. (4) Akaji, K.; Kuriyama, N.; Kimura, T.; Fujiwara, Y.; Kiso, Y. Tetrahedron Lett. 1992, 33, 3177. (5) Albericio, A.; Bailén, F. M.; Chinchilla, R.; Dodsworth, D. J.; Nájera, C. Tetrahedron 2001, 57, 9607.
1,1’-Carbonyldiimidazole, reagent gradeCDIC7H6N4OFW: 162.15[530-62-1]
O
NNN N
115533-5G 5 g115533-10G 10 g115533-25G 25 g115533-100G 100 g
1,1’-Carbonyl-di-(1,2,4-triazole), ~90%CDTC5H4N6OFW: 164.12[41864-22-6]
O
NNN
N NN
C2956-5G 5 g
Oxalic acid diimidazolide, technical gradeC8H6N4O2
FW: 190.16[18637-83-7]
NN
N N
O O
366439-1G 1 g366439-5G 5 g
2-Chloro-1,�-dimethylimidazolidinium chlorideDMCC5H10Cl2N2
FW: 169.05[37091-73-9]
Cl-N N+
Cl
529249-25G 25 g
2-Chloro-1,�-dimethylimidazolidinium tetrafluoroborate, 98%CIBC5H10BClF4N2
FW: 220.40[153433-26-2]
BF4-N N+
Cl
439274-1G 1 g439274-5G 5 g
2-Chloro-1,�-dimethylimidazolidinium hexafluorophosphate, 98%CIPC5H10ClF6N2PFW: 278.56[101385-69-7]
PF6-N N+
Cl
420336-1G 1 g420336-5G 5 g
2-Fluoro-1,�-dimethylimidazolidinium hexafluorophosphate, puriss., >98.5%DFIHC5H10F7N2PFW: 262.11[164298-27-5]
PF6-N N+
F
17381-5G 5 g17381-25G 25 g
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Phosphonium SaltsPhosphonium salts are powerful and easy-to-use peptide coupling reagents that allow in situ generation of active esters. After the recognition of chlorotris(dimethylamino)phosphonium as the activating species in the tris(dimethylamino)phosphine/CCl4 system and the importance of HOBt as an additive in peptide coupling, Castro proposed BOP (benzotriazol-1-yloxy-tris(dimethylamino) phosphonium hexafluorophosphate) as a suitable coupling reagent. Thereafter, various groups proved the efficiency of BOP and it has become widely used.1,2 Since the utilization of BOP involves the handling of the toxic and carcinogenic HMPA, the viable alternative PyBOP has been developed where the dimethylamino groups are replaced by pyrrolidine substituents. PyBOP shows comparable performance to BOP, in some cases even better.3 Numerous other variations of BOP have been reported among which the HOAt analogue to PyBOP, PyAOP, excels especially in the coupling of sterically hindered amino acids.4 The halophosphonium compounds BroP or PyCloP are efficient reagents when coupling N-methylamino acids or a,a-disubstituted amino acids.5 Recently, Goodman reported the new DEPBT (3-(Diethoxyphosphoryloxy)-1,2,3-benzotriazin-4(3H)-one) with superior performance as coupling reagent. It proved to be especially suitable for PNA synthesis, where it yielded significantly better results than even HATU.6,7
References: (1) Hudson, D. J. Org. Chem. 1988, 53, 617. (2) Rivaille, P.; Gautron, J. P.; Castro, B.; Milhaud, G. Tetrahedron 1980, 36, 3413. (3) Coste, J.; Le Nguyen, D.; Castro, B. Tetrahedron Lett. 1990, 31, 205. (4) Carpino, L. A.; El-Faham, A.; Minor, C. A.; Alberi-cio, F. J. Chem. Soc., Chem. Commun. 1988, 201. (5) Coste, J.; Frérot, E.; Jouin, P. J. Org. Chem. 1994, 59, 2437. (6) Li, H.; Jiang, X.; Ye, Y.-H.; Fan, C.; Romoff, T.; Goodman, M. Organic Lett. 1999, 1, 91. (7) Tedeschi, T.; Corradini, R.; Marchelli, R.; Pushl, A.; Nielsen, P. E. Tetrahedron: Asymm. 2002, 13, 1629.
(Benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate, 97%BOP, Castro’s reagentC12H22F6N6OP2
FW: 442.28[56602-33-6]
NN
N
OP+
N
N
H3C CH3
CH3
CH3NCH3H3C
PF6-
226084-1G 1 g226084-5G 5 g
(Benzotriazol-1-yloxy)tripyrrolidinophosphonium hexafluorophosphate, 98%PyBOP®
C18H28N6OP · PF6
FW: 520.39[128625-52-5]
NN
N
O P+
NN
NPF6
-
377848-1G 1 g377848-5G 5 g
(7-Azabenzotriazol-1-yloxy)tripyrrolidinophosphonium hexafluorophosphate, 96%PyAOPC17H27F6N7OP2
FW: 521.38[156311-83-0]
N NN
N
O P+
NN
NPF6
-
535303-1G 1 g535303-5G 5 g
Bromotris(dimethylamino)phosphonium hexafluorophosphate, 98%BroPBrP[N(CH3)2]3PF6
FW: 388.07[50296-37-2]
BrP+N
N
CH3H3C
H3CH3C
NH3C CH3
PF6-
420107-250MG 250 mg
Chlorotripyrrolidinophosphonium hexafluorophosphate, >98.0%PyCloPC12H24ClN3P · PF6
FW: 421.73[133894-48-1]
ClP+N
NN
PF6-
26564-1G-F 1 g26564-5G-F 5 g26564-25G-F 25 g
Bromotripyrrolidinophosphonium hexafluorophosphate, >95.0%PyBroP®
C12H24BrF6N3P2
FW: 466.18[132705-51-2]
BrP+N
NN
PF6-
18565-1G 1 g18565-5G 5 g18565-25G 25 g
�-(Diethoxyphosphoryloxy)-1,2,�-benzotriazin-4(�H)-one, 98%DEPBTC11H14N3O5PFW: 299.22[165534-43-0]
NNN
OO
PO
OO
CH3
CH3
495964-5G 5 g
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Ready to scale up? For competitive quotes on larger quantities or custom synthesis, contact SAFC™ at 1-800-244-117� (USA), or visit safcglobal.com.
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Uronium and Guanidinium SaltsThe special need of SPPS for rapid and highly efficient coupling reagents led to the development of several new reagents starting from BOP (Benzotriazol-1-yloxytris(dimethylamino)phosphonium hexafluorophosphate). The HOBt (N-Hydroxybenzotriazole) derived components HBTU and TBTU today belong to the most widely used reagents for peptide coupling and feature a broad application spectrum. HBTU and TBTU differ only by their counterions hexafluorophosphate or tetrafluoroborate, respectively. A comparison study showed that these anions have no significant influence on the coupling rate or racemization.
For a long time, the active HBTU and its family were believed to possess an uronium structure, but intensive studies provided evidence for the formulation of guanidinium N-oxides.1 Nevertheless, by custom, they are still called uronium type reagents. Unlike carbodiimides or phosphonium reagents, uronium salts could form tetramethylguanidinium derivatives with free amines. To circumvent this side reaction, excess reagent should be avoided and pre-activation of the carboxylic acid component is recommended.
Besides HBTU and TBTU, several other members of the uronium family are worthy of attention. The 7-aza-analogue of HBTU called HATU (1-[Bis-(dimethylamino)methyliumyl]-1H-1,2,3-triazolo[4,5-b]pyridine-3-oxide hexafluorophosphate) can be considered today’s gold standard of peptide coupling reagents. It has been used for difficult amide bond formation in solution and solid-phase (e.g., PNAs) synthesis.2 It is especially superior for macrocyclization, fragment condensation, and the coupling of N-substituted amino acids. Danishefsky reported an impressive example for the application of HATU in a late step of the total synthesis of Hemastatin with HATU simultaneously connecting two peptide macrocycles.3
HN
N
NH
NOTES
H
H
TESO CO2HO
HN
OTBS
O
HN
ONH
N
TBSO
OO
NHTroc
O
NHTBSO
O
NH
O
HNN
OTBS
OO
TrocHN
HO2C
1. Pb/Cd, THF, aq NH4OAc, 1.5 h2. HATU, HOAt, DIEA, DMF, rt, 28 h3. TBAF, AcOH, THF, rt, 55 h
34 % for 3 steps
HN
N
NH
NOTES
H
H
TESOO
HN
OTBS
O
HN
O
NH
N
TBSO
OO
NH
O
NHTBSO
O
NH
HN
N
OTBS
OO
HN
O
O
O
Scheme: Application of HATU in the simultaneous cyclization of two linked peptide strands for the synthesis of Hemastatin.
Substitution of HBTU’s dimethylamino groups by pyrrolidine residues as in HBPyU leads to less racemization during peptide coupling.4 Introducing an electron-withdrawing group into the benzotriazole moiety enhances the reactivity. Accordingly HCTU and TCTU show improved performance in difficult or hindered couplings and cyclizations when compared to HBTU.5 HCTU has also proven suitability for tandem oligonucleotide coupling on solid phase supports in a competitive study.6 TDBTU, TPTU, HOTU and TOTU are recommended for fragment condensation and other critical cases leading to minimal racemization.7
TSTU and HSTU are less efficient than their HOBt and HOAt derived analogues. They compensate for the disadvantage
O-(Benzotriazol-1-yl)-N,N,N’,N’-tetramethyluronium hexafluorophosphate, purum, >98.0%HBTUC11H16F6N5OPFW: 379.24[94790-37-1]
NN
N+
PF6-N
N+
O-
12804-1G-F 1 g12804-5G-F 5 g12804-25G-F 25 g
O-(Benzotriazol-1-yl)-N,N,N’,N’-tetramethyluronium tetrafluoroborate, 97%TBTUC11H16N5O · BF4
FW: 321.08[125700-67-6]
NN
N+
BF4-N
N+
O-
12806-1G-F 1 g12806-5G-F 5 g12806-25G-F 25 g12806-100G-F 100 g12806-250G-F 250 g
O-(7-Azabenzotriazol-1-yl)-N,N,N’,N’-tetramethyluronium hexafluorophosphate, 97%HATUC10H15F6N6OPFW: 380.23[148893-10-1] N
NN
N+
PF6-N
N+
O-
445460-1G 1 g 445460-5G 5 g445460-25G 25 g
O-(Benzotriazol-1-yl)-N,N,N’,N’-bis(tetramethylene)uronium hexafluorophosphate, 98%HBPyUC15H20F6N5OPFW: 431.32[105379-24-6]
NN
NPF6
-
O
N
N+
420263-250MG 250 mg420263-1G 1 g
O-Benzotriazol-1-yl-N,N,N’,N’-bis(pentamethylene)uronium hexafluorophosphate, 98%HBPipUC17H24F6N5OPFW: 459.37[190849-64-0]
NN
NPF6
-
O
N
N+
420271-1G 1 g
with greater stability in aqueous solvent mixtures allowing the modification of proteins.8
The new thiouronium reagent TOTT (S-(1-Oxido-2-pyridyl)-N,N,N’,N’-tetramethylthiuronium tetrafluoroborate) is ideally suited for the rapid and high-yielding preparation of primary amides when reacted with carboxylic acids and ammonium chloride.9
References: (1) Carpino, L. A. et al. Angew. Chem. Int. Ed. 2002, 41, 441. (2) Uhlmann, E.; Peymann, A.; Breipohl, G.; Will, D. W. Angew. Chem. Int. Ed. 1998, 37, 2796. (3) Kamencka, T. M.; Danishefsky, S. J. Chem. Eur. J. 2001, 7, 41. (4) Chen, S.; Xu, J. Tetrahe-dron Lett. 1992, 33, 647. (5) Sabatino, G.; Mulinacci, B.; Alcaro, M.C.; Chelli, M.; Rovero, P.; Papini, A.M. Lett. Pept. Sci. 2002, 9, 119. (6) Pon, R. T.; Yu, S.; Sanghvi, Y. S. J. Org. Chem. 2002, 67, 856. (7) Knorr, R. et al. Tetrahedron Lett. 1989, 30, 1927. (8) Knorr, R.; Trzeciak, A.; Bannwarth, W.; Gillessen, D. Peptides 1990, 62. (9) Bailin, M. A. et al. J.Org. Chem. 1999, 64, 8936.
si
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TO ORDER: Contact your local Sigma-Aldrich office (see back cover), call 1-800-�25-�010 (USA), or visit sigma-aldrich.com/chemicalsynthesis.
Co
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(Benzotriazol-1-yloxy)dipiperidinocarbenium tetrafluoroborate, purum, >95.0%TBPipUC17H24BF4N5OFW: 401.21[136605-16-8]
NN
NBF4
-
O
N
N+
12813-1G 1 g12813-5G 5 g12813-25G 25 g
O-(6-Chlorobenzotriazol-1-yl)-N,N,N’,N’- 8 tetramethyluronium hexafluorophosphate, purum, >98.0%HCTUC11H15ClF6N5OPFW: 413.69[330645-87-9]
NN
NPF6
-
O
N
N+Cl
04936-5G-F 5 g04936-25G-F 25 g04936-100G-F 100 g
O-(6-Chlorobenzotriazol-1-yl)-N,N,N’,N’- 8tetramethyluronium, purum, >98.0%TCTUC11H15BClF4N5OFW: 355.53[330641-16-2]
NN
NBF4
-
O
N
N+Cl
78133-5G-F 5 g78133-25G-F 25 g78133-100G-F 100 g
O-(�,4-Dihydro-4-oxo-1,2,�-benzotriazin-�-yl)-N,N,N’,N’-tetramethyluronium tetrafluoroborate, purum, >99.0%TDBTUC12H16BF4N5O2
FW: 349.09[125700-69-8]
BF4-
NNN
OO N+
N
37345-1G-F 1 g37345-5G-F 5 g37345-25G-F 100 g
O-(2-Oxo-1(2H)pyridyl)-N,N,N’,N’-tetramethyluronium tetrafluoroborate, 97%TPTUC10H16BF4N3O2
FW: 297.06[125700-71-2]
BF4-
N
OO N+
N
365726-5G 5 g
O-[(Ethoxycarbonyl)cyanomethylenamino]-N,N,N’,N’-tetramethyluronium hexafluorophosphate, purum, >97.0%HOTUC10H17F6N4O3PFW: 386.23
PF6-
N
CNO
N
N+
O
O
02576-1G 1 g02576-5G 5 g02576-25G 25 g
O-[(Ethoxycarbonyl)cyanomethylenamino]-N,N,N’,N’-tetramethyluronium tetrafluoroborate, 98%TOTUC2H5O2CC(CN)=NOC[N(CH3)2]=N(CH3)2BF4
FW: 328.07[136849-72-4]
BF4-
N
CNO
N
N+
O
O
382469-1G 1 g382469-5G 5 g
N,N,N’,N’-Tetramethyl-O-(N-succinimidyl)uronium hexafluorophosphate, purum, >99.0%HSTUC9H16F6N3O3PFW: 359.21[265651-18-1]
PF6-N O
N
N+
O
O
09668-1G 1 g09668-5G 5 g09668-25G 25 g
N,N,N’,N’-Tetramethyl-O-(N-succinimidyl)uronium tetrafluoroborate, 97%TSTUC9H16BF4N3O3
FW: 301.05[105832-38-0]
BF4-N O
N
N+
O
O
385530-1G 1 g385530-5G 5 g
Dipyrrolidino(N-succinimidyloxy)carbenium , purum, >98.0%HSPyUC13H20F6N3O3PFW: 411.28[207683-26-9]
PF6-N O
N
N+
O
O
85971-1G 1 g85971-5G 5 g85971-25G 25 g
S-(1-Oxido-2-pyridyl)-N,N,N’,N’- 8tetramethylthiuronium tetrafluoroborate, purum, >95.0%TOTTC10H16BF4N3OSFW: 313.12[255825-38-8]
BF4-S
N
N+N+O-
94623-5G-F 5 g94623-25G-F 25 g
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Ready to scale up? For competitive quotes on larger quantities or custom synthesis, contact SAFC™ at 1-800-244-117� (USA), or visit safcglobal.com.
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Miscellaneous Coupling ReagentsPropylphosphonic anhydride (T3P®)1 is a very efficient, non-toxic coupling reagent especially suited for connecting sterically hindered amino acids. A further advantage is the easy removal of byproducts by extraction of the crude product with water.2
Mukaiyama introduced pyridinium reagents like 2-chloromethyl-pyridinium iodide to peptide chemistry, which found application in the synthesis of a b-lactam carbacepham skeleton.3
Cyanuric chloride has been used for the preparation of acyl chlorides, amides and peptides. The cyanuric chloride derivative CDMT (2-chloro-4,6-dimethoxy-1,3,5-triazine) yields highly reactive esters with carboxylic acids that can then be used as powerful acylating agents for amines and the less nucleophilic, alcohols.4 The activation is performed in presence of a base, preferentially NMM (N-methylmorpholine). In situ NMM and CDMT form the intermediate DMTMM. DMTMM can be isolated and used as coupling reagent independently.5 In contrast to CDMT, DMTMM does not require pre-activation of the carboxylic acid. The coupling efficiency of DMTMM in SPPS was found to be comparable to PyBOP while racemization could be kept below the detection limit.6
References: (1) T3P is a registered trademark of Clariant. (2) Klose, J. et al. Chem. Com-mun. 1999, 1847. (3) Berrien, J.-F.; Billon, M.-A.; Husson, H.-P. J. Org. Chem. 1995, 60, 2922. (4) Kaminski, Z. J. Synthesis 1987, 917. (5) Kaminski, Z. J.; Paneth, P.; Rudzinski, J. J. Org. Chem. 1998, 63, 4248. (6) Falchi, A.; Giacomelli, G.; Porcheddu, A.; Taddei, M. Synlett 2000, 275.
N
N
N
MeO OMe
Cl
+
N
O THF,rt, 30 min
100 %N
N
N
MeO OMe
N+
O Cl-
CDMT NMM DMTMM
Scheme: Reaction of CDMT with NMM to the powerful acylating agent DMTMM.
Propylphosphonic anhydride solution, 50 wt. % in ethyl acetateC9H21O6P3
FW: 318.18[68957-94-8]
PO
PO
PO
O
O
O
431303-10ML 10 mL431303-50ML 50 mL
Propylphosphonic anhydride solution, technical, ~50% in DMFC9H21O6P3
FW: 318.18[68957-94-8]
PO
PO
PO
O
O
O
81801-25ML 25 mL81801-100ML 100 mL
2-Chloro-1-methylpyridinium iodide, 97%C6H7ClINFW: 255.48[14338-32-0]
N+
CH3
Cl
I-
198005-10G 10 g198005-25G 25 g198005-100G 100 g
2-Chloro-4,6-dimethoxy-1,�,5-triazine, 97%CDMTC5H6ClN3O2
FW: 175.57[3140-73-6]
N
N
N
O OH3C CH3
Cl
375217-5G 5 g
4-(4,6-Dimethoxy-1,�,5-triazin-2-yl)-4-methylmorpholinium chloride, purum, >98.0%DMTMMC10H17ClN4O3
FW: 276.72[3945-69-5]
N
N
N
O OH3C CH3
N+
O
CH3 Cl-
74104-1G-F 1 g74104-5G-F 5 g
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TO ORDER: Contact your local Sigma-Aldrich office (see back cover), call 1-800-�25-�010 (USA), or visit sigma-aldrich.com/chemicalsynthesis.
New
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Am
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New Unnatural Amino AcidsUnnatural amino acids are utilized as chiral building blocks, conformational constraints, molecular scaffolds, or pharmacologically active compounds. They represent a nearly infinite array of diverse structural elements for the development of new therapeutic drugs. Small-molecule combinatorial libraries containing unnatural amino acid residues already show remarkable impact on drug discovery processes. Novel short-chain peptide ligand mimetics with both enhanced biological activity and improved proteolytic resistance are drug candidates in today’s R&D pipelines of pharmaceutical companies. Sigma-Aldrich is pleased to introduce 40 new additions to its unique and broad portfolio of more than 700 unnatural amino acids.
b-amino Acids
(cis)-�-Aminobicyclo[2.2.1]heptane-2-carboxylic acid 8hydrochloride, purum, >98.0% (TLC)C8H13NO2 · HClFW: 191.66
NH2
OOH
HCl
08356-1G-F 1 g
4-Amino-nicotinic acid, purum, >97.0% (HPLC) 8C6H6N2O2
FW: 138.12[7418-65-7]
O
OH
N
NH2
11585-5G-F 5 g
cis-2-(Boc-amino)-cyclohexanecarboxylic acid, 8 purum, >98.0% (TLC)C12H21NO4
FW: 243.3[63216-49-9]
HN
BOC
OHO
36314-1G-F 1 g
cis-2-(Fmoc-amino)-cyclohexanecarboxylic acid, 8 purum, >98.0% (HPLC)C22H23NO4
FW: 365.42[194471-85-7]
HN
Fmoc
OHO
29294-1G-F 1 g
cis-2-Amino-2-methylcyclohexanecarboxylic acid 8 hydrochloride, purum, >98.0% (CHN)C8H15NO2 · HClFW: 193.67[202921-88-8]
NH2
OHO
HCl
30254-500MG-F 500 mg
cis-2-Amino-2-methylcyclopentanecarboxylic acid 8 hydrochloride, purum, >98.0% (CHN)C7H13NO2 · HClFW: 179.64[156292-34-1] HCl
OHO
NH2
39927-500MG-F 500 mg
cis-2-Aminocycloheptanecarboxylic acid 8 hydrochloride, purum, >98.0% (TLC)C8H15NO2 · HClFW: 193.67
HCl
OHO
NH2
11252-500MG-F 500 mg
Fmoc-D-b-Homophe-OH, purum, >97.0% (HPLC) 8C25H23NO4
FW: 401.45[209252-16-4] OH
ONHFmoc
18074-500MG-F 500 mg
Trans-2-(Boc-amino)-cyclohexanecarboxylic acid, 8 purum, >98.0% (TLC)C12H21NO4
FW: 243.3[209128-50-7]
HN
O OH
BOC
29293-1G-F 1 g
trans-2-(Fmoc-amino)-cyclohexanecarboxylic acid, 8 purum, >98.0% (HPLC)C22H23NO4
FW: 365.42[381241-08-3]
HN
O OH
Fmoc
28319-1G-F 1 g
Z-DL-b-Homoalanine, purum, >98.0% (HPLC) 8C12H15NO4
FW: 237.25
OH
ONHO
O
39599-1G 1 g39599-5G 5 g
Z-b-Homoala-OH, purum, >98.0% 8C12H15NO4
FW: 237.25[83509-88-0]
OH
ONHO
O
61669-500MG-F 500 mg
Phenylglycine Derivatives
2-(4-Boc-piperazino)-2-[2-(trifluoromethyl)phenyl] 8acetic acid, purum, >95.0% (HPLC)C18H23F3N2O4
FW: 388.38
O
OHN
N
F3C
BOC
38903-500MG-F 500 mg
2-(4-Boc-piperazino)-2-phenylacetic acid, purum, 8 >97.0% (HPLC)C17H24N2O4
FW: 320.38
O
OHN
NBOC
16298-500MG-F 500 mg
�-(Trifluoromethyl)-DL-phenylglycine, purum, 8 >98.0% (HPLC)C9H8F3NO2
FW: 219.16[242475-26-9]
O
OHNH2
F3C
53636-500MG-F 500 mg
Methyl 2-(4-Boc-piperazino)-2-(2-pyridyl)acetate, 8 purum, >95.0% (HPLC)C17H25N3O4
FW: 335.4N
N
OCH3O
NBOC
19578-500MG-F 500 mg
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Ready to scale up? For competitive quotes on larger quantities or custom synthesis, contact SAFC™ at 1-800-244-117� (USA), or visit safcglobal.com.
New
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Am
ino
Acid
s
Alanine Derivatives
4-(Hydroxymethyl)-D-phenylalanine, purum, 8 >97.0% (HPLC)C10H13NO3
FW: 195.22
O
OHNH2HO
43667-500MG 500 mg
Boc-�-(1,2,4-triazol-1-yl)-Ala-OH, purum 8C10H16N4O4
FW: 256.26 N
O
OHHN
BOC
N
N
50996-500MG-F 500 mg
Boc-�-(1-pyrazolyl)-Ala-OH, purum, >97.0% (HPLC) 8C11H17N3O4
FW: 255.27[21012-18-0]
N
O
OHHN
BOC
N
67387-500MG-F 500 mg
Boc-4,5-dehydro-Leu-OH dicyclohexylamine salt, 8 purum, >96.0% (HPLC)C11H19NO4 · C12H23NFW: 410.59[87720-54-5]
O
OH
HN
HNBOC
11578-50MG 50 mg
Fmoc-�-(1,2,4-triazol-1-yl)-Ala-OH, purum, 8 >97.0% (HPLC)C20H18N4O4
FW: 378.38 N
O
OHHN
Fmoc
N
N
53229-500MG-F 500 mg
Fmoc-�-(1-pyrazolyl)-Ala-OH, purum, >97.0% (HPLC) 8C21H19N3O4
FW: 377.39 N
O
OHHN
Fmoc
N
51916-500MG-F 500 mg
L-a-Neopentylglycine, purum, >98.0% (TLC) 8C7H15NO2
FW: 145.2[57224-50-7]
OH
O
NH2
73489-1G-F 1 g73489-5G-F 5 g
Proline Derivatives
N(R)-a-Allyl-proline hydrochloride, purum, 8 >98.0% (TLC)C8H13NO2·HClFW: 191.66[177206-69-8]
HClNH O
OH
06541-500MG-F 500 mg
(S)-a-Allyl-proline hydrochloride, purum, >98.0% (TLC) 8C8H13NO2
FW: 155.19[129704-91-2] N
HO
OH
06594-500MG-F 500 mg
Boc-(R)-4-(�,4-difluorobenzyl)-L-proline, purum, 8 >97.0% (HPLC)C17H21F2NO4
FW: 341.35N O
OH
BOCF
F
40372-500MG-F 500 mg
Boc-(R)-4-[2-(trifluoromethyl)benzyl]-L-proline, 8 purum, >98.0% (HPLC)C18H22F3NO4
FW: 373.37
N O
OH
BOC
CF3
38455-500MG-F 500 mg
Boc-(R)-4-[4-(trifluoromethyl)benzyl]-L-proline, 8 purum, >98.0% (HPLC)C18H22F3NO4
FW: 373.37N O
OH
BOC
F3C
01336-500MG-F 500 mg
Boc-(R)-a-(4-fluorobenzyl)-Pro-OH, purum, 8 >98.0% (HPLC)C17H22FNO4
FW: 323.36[706806-64-6]
NO
OH
BOC
F
67420-500MG-F 500 mg
Boc-(R)-a-(4-tert-butylbenzyl)-Pro-OH, purum, 8 >97.0% (HPLC)C21H31NO4
FW: 361.48
NO
OH
BOC
39793-500MG-F 500 mg
Boc-(R)-a-(4-trifluoromethylbenzyl)-Pro-OH, 8 purum, >98.0% (HPLC)C18H22F3NO4
FW: 373.37
NO
OH
BOC
CF3
42004-500MG-F 500 mg
Boc-(R)-a-allyl-Pro-OH, purum, >98.0% (HPLC) 8C13H21NO4
FW: 255.31[144085-23-4] N
O
OH
BOC
06538-500MG-F 500 mg
Boc-(R)-a-benzyl-Pro-OH, purum, >99.0% (HPLC) 8C17H23NO4
FW: 305.37[706806-60-2]
NO
OH
BOC
47079-500MG-F 500 mg
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TO ORDER: Contact your local Sigma-Aldrich office (see back cover), call 1-800-�25-�010 (USA), or visit sigma-aldrich.com/chemicalsynthesis.
14N
ew
Un
natu
ral
Am
ino
Aci
ds
Boc-(S)-a-(4-fluorobenzyl)-Pro-OH, purum, 8 >98.0% (HPLC)C17H22FNO4
FW: 323.36[706806-65-7]
NO
OH
BOC
F
14931-500MG-F 500 mg
Boc-(S)-a-(4-tert-butylbenzyl)-Pro-OH, purum, 8 >98.0% (HPLC)C21H31NO4
FW: 361.48
NO
OH
BOC
39166-500MG-F 500 mg
Boc-(S)-a-(4-trifluoromethylbenzyl)-Pro-OH, purum, 8 >98.0% (HPLC)C18H22F3NO4
FW: 373.37
NO
OH
BOC
CF3
05199-500MG-F 500 mg
Boc-(S)-a-allyl-Pro-OH, purum, >98.0% (HPLC) 8C13H21NO4
FW: 255.31[706806-59-9] N
O
OH
BOC
06486-500MG-F 500 mg
Boc-(S)-a-benzyl-Pro-OH, purum, >97.0% (HPLC) 8C17H23NO4
FW: 305.37[706806-61-3]
NO
OH
BOC
76896-500MG-F 500 mg
Miscellaneous
(S)-6-Oxo-2-piperidinecarboxylic acid, purum, 8 >97.0% (HPLC)C6H9NO3
FW: 143.14[34622-39-4]
NH
O
OHO
36323-1G-F 1 g36323-5G-F 5 g
2-[2-(Boc-amino)ethoxy]ethoxyacetic acid 8 dicyclohexylamine salt, purum, >98.0% (TLC)C11H21NO6 · C12H23NFW: 444.61
O
OHO
ONH
BOCHN
14766-500MG-F 500 mg
8 Safe and Simple Application of Phosgene in Your Lab!Phosgene Generation KitPhosgene is an extremely versatile reagent allowing easy access to isocyanates, ureas, carbamates, carbonates, acyl and alkyl chlorides. As a dehydrating agent phosgene can also lead to isocyanides, cyanides and carbodiimides.
In cooperation with BUSS ChemTech, Sigma-Aldrich now offers a safe and reliable phosgene generation kit giving simple access to small quantities of high-purity, gaseous phosgene exactly when needed, while no transport and storage of liquid phosgene is necessary. The generator converts safe triphosgene into phosgene on demand using a patented catalyst (U.S. patent 6,399,822 B1).
Test the suitability of the generators in your own laboratory today with a starter kit and cartridges from Sigma-Aldrich.
Advantages• Easy access to small quantities of phosgene
• Versatile chemistry where other reagents offer poor results
• No transport or storage of liquid phosgene
• Production on demand of high purity gaseous phosgene
• Safe and reliable handling
• Simple workup of reactions to obtain pure products
• Operation scale from mmol to industrial levels
Name Mol. Formula MW or FW CAS No. Cat. No.Cartridge for Phosgene Generation, Starter Kit
Contains one 0.02 mole cartridge (#519758), hose connector with sealing lips, Viton tubing, dosimeter badge, and instructions for use.
519782-1KT
Cartridge for Phosgene Generation, 0.02 mole COCl2 98.92 75-44-5 519758-1PAK
519758-5PAK
Cartridge for Phosgene Generation, 0.05 mole COCl2 98.92 75-44-5 519766-1PAK
519766-5PAK
Visit sigma-aldrich.com for full details.
Solutions for the upscale to industrial production levels are available at BUSS ChemTech.
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Ready to scale up? For competitive quotes on larger quantities or custom synthesis, contact SAFC™ at 1-800-244-117� (USA), or visit safcglobal.com.
New
Too
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Pep
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New Tools for Peptide PEGylationCirculatory half-life is a key success factor of new drugs. In this respect, modification of potential candidates ranging from non-peptidic molecules to peptides and proteins with polyethyleneglycol chains (PEGs) offers numerous advantages. PEGs are non-toxic, non-immunogenic, non-antigenic, highly soluble in water and FDA approved.1 The PEGylated conjugates show a decreased degradation by metabolic enzymes and a reduction or elimination of protein immunogenicity. Thus Pettit et al. found a 50-fold enhancement of residence in the organism of PEGylated IL-15 (Interleukin).2
Sigma-Aldrich is pleased to provide you with a continuously growing and diverse portfolio of PEGs: 27 new products that will help you improve the success of your drug discovery research.
References: (1) Veronese, F. M.; Pasut, G. Drug Disc. Tod. 2005, 21, 1451. (2) Pettit, D. K. et al. J. of Biol. Chem. 1997, 272, 2312.
tert-Butyl 12-amino-4,7,10-trioxadodecanoate 8C13H27NO5
FW: 277.36[252881-74-6] O
OO
O
OH2N
83060-1G-F 1 g83060-5G-F 5 g
O,O’-Oxydiethylene-diglycolic acid 8C8H14O7
[13887-98-4]HO
OO
OOH
OO
92893-50ML 50 mL92893-250ML 250 mL
{2-[2-(Fmoc-amino)ethoxy]ethoxy}acetic acid, 8 purum, >95.0%C21H23NO6
FW: 385.41[166108-71-0]
HN
OO
OH
O
Fmoc
95003-500MG-F 500 mg
2-[2-(2-Methoxyethoxy)ethoxy]acetic acid, 8 technical, >90%CH3(OCH2CH2)2OCH2CO2HFW: 178.18[16024-58-1] H3C
OO
OOH
O
64732-250ML 250 mL64732-1L 1 L
Methoxypolyethylene glycol 5,000 maleimide, 8 BioChemika, >90%[99126-64-4]
OO
ON
O
On
63187-1G 1 g63187-5G 5 g
O,O’-Bis[2-(succinylamino)ethyl]polyethylene glycol 8HOOCCH2CH2CONH(CH2
CH2O)nCH2CH2NHCOCH2
CH2COOHMr 10000
OO
NH
HN
n
O
O
OH
O
O
HO
14571-250MG 250 mg14571-1G 1 g
O,O’-Bis[2-(succinylamino)ethyl]polyethylene glycol 8HOOCCH2CH2CONH(CH2
CH2O)nCH2CH2NHCOCH2
CH2COOH Mr 6000
OO
NH
HN
n
O
O
OH
O
O
HO
14569-250MG 250 mg14569-1G 1 g
O,O’-Bis[2-(succinylamino)ethyl]polyethylene glycol 8HOOCCH2CH2CONH(CH2
CH2O)nCH2CH2NHCOCH2
CH2COOH Mr 20000
OO
NH
HN
n
O
O
OH
O
O
HO
14573-250MG 250 mg14573-1G 1 g
O,O’-Bis[2-(succinylamino)ethyl]polyethylene glycol 8HOOCCH2CH2CONH(CH2
CH2O)nCH2CH2NHCOCH2
CH2COOH Mr 3000
OO
NH
HN
n
O
O
OH
O
O
HO
14567-250MG 250 mg
Hycron linker 8C17H31BrO6
FW: 411.33[166668-33-3]
OO
OO O
O
Br
96823-1G-F 1 g96823-5G-F 5 g
O,O’-Bis(2-aminoethyl)octadecaethylene glycol, 8 >95% (oligomer purity)C40H84N2O19
FW: 897.1 OO
NH2H2N
18
06703-1G-F 1 g
O,O’-Bis(2-carboxyethyl)dodecaethylene glycol, 8 >95% (oligomer purity)C30H58O17
FW: 690.77O
O12
O
HOO
OH
94704-1G-F 1 g
O-Methyl-undecaethylene glycol, >95% 8 (oligomer purity)HO(CH2CH2O)11CH3
FW: 516.62[114740-40-8]
H3CO
O11
H
16603-500MG-F 500 mg
O-Methyl-heptaethylene glycol, >95% 8 (oligomer purity)HO(CH2CH2O)7CH3
FW: 340.41[4437-01-8]
H3CO
O7
H
41749-1G-F 1 g
Octaethylene glycol, >95% (oligomer purity) 8HO(CH2CH2O)8HFW: 370.44[5117-19-1]
HOO
8
H
15879-1G-F 1 g15879-5G-F 5 g
si
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TO ORDER: Contact your local Sigma-Aldrich office (see back cover), call 1-800-�25-�010 (USA), or visit sigma-aldrich.com/chemicalsynthesis.
New
To
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tid
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O-(2-tert-Butyloxycarbonylethyl)dodecaethylene 8 glycol, >95% (oligomer purity)C31H62O15
FW: 674.81 HOO
12O
O
08453-500MG-F 500 mg
Methoxypolyethylene glycol 5,000 acetic acid, 8 BioChemika, >80%
OO
OHn
H3CO
70718-1G-F 1 g70718-5G-F 5 g70718-25G-F 25 g
Methoxypolyethylene glycol 5,000 propionic acid, 8 BioChemika, >80%
OO
nO
OHH3C
88908-1G-F 1 g88908-5G-F 5 g88908-25G-F 25 g
N-Boc-2,2’-(ethylenedioxy)diethylamine, purum, 8 >95.0%C11H24N2O4
FW: 248.32[153086-78-3]
H2NO
ONH
BOC
89761-1G-F 1 g89761-5G-F 5 g
N-Boc-4,7,10-trioxa-1,1�-tridecanediamine, purum, 8 >97.0%C15H32N2O5
FW: 320.42 OO
O NH
H2NBOC
93113-1G-F 1 g
O-(2-Aminoethyl)-O’-[2-(Boc-amino)ethyl] 8 polyethylene glycol 5000
OO
NHn
BOCH2N
671266-100MG 100 mg671266-500MG 500 mg
O-[2-(Fmoc-amino)-ethyl]-O’-(2-carboxyethyl) 8 polyethylene glycol �000
OO
n
OHHN
FmocO
669717-100MG 100 mg669717-500MG 500 mg
Octacosaethylene glycol 8HO(CH2CH2O)28HFW: 1251.49 HO
O28
H
672351-500MG 500 mg
O-(2-Mercaptoethyl)-O’-methyl-hexa(ethylene glycol) 8C15H32O7SFW: 356.48 O
OSH
6
H3C
672572-250MG 250 mg
O-(2-Carboxyethyl)-O’-(2-mercaptoethyl) 8 heptaethylene glycolC19H38O10SFW: 458.56
OO
SH7
HO
O
672688-250MG 250 mg
O-(2-Aminoethyl)-O’-[2-(Boc-amino)ethyl] 8 polyethylene glycol �000
OO
NHn
H2N BOC
671150-500MG 500 mg
O-(2-Aminoethyl)-O’-[2-(Boc-amino)ethyl] 8 polyethylene glycol 10000
OO
NHn
H2N BOC
671363-100MG 100 mg671363-500MG 500 mg
Monthly Chemistry E-Newsletter
Got ChemNews?sigma-aldrich.com/chemnews
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Ready to scale up? For competitive quotes on larger quantities or custom synthesis, contact SAFC™ at 1-800-244-117� (USA), or visit safcglobal.com.
Fluo
rou
s Pep
tide
Syn
thesis
Fluorous Peptide SynthesisFluorous-phase chemistry offers new synthesis and separation strategies for the synthesis of peptides in solution or in SPPS. Orthogonal to other purification procedures, Fluorous Solid-Phase Extraction (F-SPE), fluorous HPLC or fluorous liquid-liquid extraction require an additional but greatly simplifying workup of the final products. The necessary fluorous tags can be introduced by using pre-tagged reagents or through the use of tagging compounds at various stages of peptide synthesis (see scheme).
Some recent examples of fluorous peptides synthesis include the peptide synthesis on fluorous supports by Mizuno et al.,1 the solid-phase peptide synthesis with fluorous capping by Kumar and Montanari2, or the application of fluorous N-protecting groups in peptide synthesis by Overkleeft et al.3
References: (1) Mizuno, M. et al. Tetrahedron Lett. 2004, 45, 3425. (2) Kumar, K.; Montanari, V. J. Am. Chem. Soc. 2004, 126, 9528. (3) Overkleeft, H. S. et al. Tetrahedron Lett. 200�, 44, 9013.
2-Chloro-4,6-bis[�-(perfluorohexyl)propyloxy]- 8 1,�,5-triazine C21H12ClF26N3O2
FW: 867.75 N
N
N
Cl
O O (CF2)5CF3F3C(F2C)5
672378-1G 1 g
4-(�,�,4,4,5,5,6,6,7,7,8,8,8-Tridecafluorooctylthio) 8 phenol, >97% C14H9F13OSFW: 472.26
OH
S
(CF2)5CF3
43893-1G-F 1 g43893-5G-F 5 g
4-(�,�,4,4,5,5,6,6,7,7,8,8,9,9,10,10,10- 8 Heptadecafluorodecylthio)phenol, >97% C16H9F17OSFW: 572.28
OH
S
(CF2)7CF3
40829-1G-F 1 g40829-5G-F 5 g
PG
HN
O
OR1
HN
O
OR1O
NH
PGR2PG
PGPG
OH
ONH
PGR2PG
Activation
Deprotection
Capping
Cleavage
FINISHED PEPTIDE Fluorouscap-tags
Fluorouscouplingreagents
Fluorous side-chainprotecting group
Fluorousacid- or base-labileN-protecting group
Fluorouspurification tags
Fluorous Peptide Coupling Tools
2,7-Bis(1H,1H,2H,2H-perfluorooctyl)-9- 8 fluorenylmethoxycarbonyl-chloridC31H17ClF26O2
FW: 950.88 (CF2)5CF3F3C(F2C)5
O
Cl O
672262-1G 1 g
2-[(4,4,5,5,6,6,7,7,7-Nonafluoro-1,1-dimethylheptyloxy)-carbonyloxyimino]-2-phenylacetonitrileC18H15F9N2O3
FW: 478.31 NC NO O
O
(CF2)3CF3
01382-1G 1 g
2-[(4,4,5,5,6,6,7,7,8,8,9,9,9-Tridecafluoro-1,1-dimethylnonyloxy) carbonyloxyimino]-2-phenylacetonitrileC20H15F13N2O3
FW: 578.32 NC NO O
O
(CF2)5CF3
11807-1G-F 1 g11807-5G-F 5 g
2-[(4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,11-Heptadecafluoro-1,1-dimethylundecyloxy)carbonyloxyimino]-2-phenylacetonitrileC22H15F17N2O3
FW: 678.34[350716-42-6] NC N
O O
O
(CF2)7CF3
55118-1G-F 1 g55118-5G-F 5 g
Fluorous Protecting Groups
si
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TO ORDER: Contact your local Sigma-Aldrich office (see back cover), call 1-800-�25-�010 (USA), or visit sigma-aldrich.com/chemicalsynthesis.
Flu
oro
us
Pep
tid
e
Syn
thesi
s
N-[4-(�,�,4,4,5,5,6,6,6-Nonafluorohexyl) benzyloxycarbonyloxy]succinimideC18H14F9NO5
FW: 495.29O O
ON
F3C(F2C)3
O
O
00246-1G-F 1 g
N-[4-(�,�,4,4,5,5,6,6,7,7,8,8,8-Tridecafluorooctyl) benzyloxycarbonyloxy] succinimide C20H14F13NO5
FW: 595.31[556050-48-7] O O
ON
F3C(F2C)5
O
O
05656-1G-F 1 g05656-5G-F 5 g
N-[4-(�,�,4,4,5,5,6,6,7,7,8,8,9,9,10,10,10-Heptadecafluorodecyl) benzyloxycarbonyloxy]succinimide C22H14F17NO5
FW: 695.32[556050-49-8] O O
ON
F3C(F2C)7
O
O
14944-1G-F 1 g14944-5G-F 5 g
4-(4,4,5,5,6,6,7,7,7-Nonafluoroheptyloxy)benzyl alcohol C14H13F9O2
FW: 384.24O
OH
F3C(F2C)3
01452-1G-F 1 g
4’-(4,4,5,5,6,6,7,7,8,8,9,9,9-Tridecafluorononyloxy)benzyl alcohol C16H13F13O2
FW: 484.25O
OH
F3C(F2C)5
67772-1G-F 1 g67772-5G-F 5 g
4-(4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,11- Heptadecafluoroundecyloxy)benzyl alcoholC18H13F17O2
FW: 584.27O
OH
F3C(F2C)7
97071-1G-F 1 g97071-5G-F 5 g
4-(�,�,4,4,5,5,6,6,6-Nonafluorohexyl)benzyl alcohol, >95%C13H11F9OFW: 354.21 OH
F3C(F2C)3
08431-1G-F 1 g
4-(�,�,4,4,5,5,6,6,7,7,8,8,8-Tridecafluorooctyl)benzyl alcohol, >97.0%C15H11F13OFW: 454.23[356055-76-0]
OH
F3C(F2C)5
16638-1G-F 1 g16638-5G-F 5 g
4-(�,�,4,4,5,5,6,6,7,7,8,8,9,9,10,10,10-Heptadecafluorodecyl)- benzyl alcohol, >98.0%C17H11F17OFW: 554.24[356055-77-1]
OH
F3C(F2C)7
19563-1G-F 1 g19563-5G-F 5 g
1-(4-Methoxyphenyl)-1-[4-(1H,1H,2H,2H- 8perfluorodecyl)phenyl]-1-phenylmethyl chlorideC30H20ClF17OFW: 754.91[865758-37-8]
F3C(F2C)7
Cl
OCH3
672149-1G 1 g
1,1-Di-(4-methoxyphenyl)-1-[4-(1H,1H,2H,2H- 8perfluorodecyl)phenyl]methanol, 97%C31H23F17O3
FW: 766.49[865758-47-0]
F3C(F2C)7
OH
OCH3
OCH3
672696-1G 1 g
Diisopropyl(�,�,4,4,5,5,6,6,6-nonafluorohexyl)silane, >95%C12H19F9SiFW: 362.35[356056-13-8]
SiF3C(F2C)3
H
18976-1G-F 1 g
Diisopropyl(�,�,4,4,5,5,6,6,7,7,8,8,8-tridecafluorooctyl)silane, >95%C14H19F13SiFW: 462.37[356056-14-9]
SiF3C(F2C)5
H
00454-1G-F 1 g00454-5G-F 5 g
Diisopropyl(�,�,4,4,5,5,6,6,7,7,8,8,9,9,10,10,10-heptadeca-fluorodecyl)silane, >95%C16H19F17SiFW: 562.38[356056-15-0]
SiF3C(F2C)7
H
04537-1G-F 1 g04537-5G-F 5 g
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Ready to scale up? For competitive quotes on larger quantities or custom synthesis, contact SAFC™ at 1-800-244-117� (USA), or visit safcglobal.com.
Fluo
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Syn
thesis
N-Succinimidyl 4,4,5,5,6,6,7,7,8,8,9,9,9- 8tridecafluorononanoate, purum, >97.0%C13H8F13NO4
FW: 489.19F3C(F2C)5 O
ON
O
O
41687-5MG 5 mg41687-25MG 25 mg
N-Succinimidyl 4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,11- 8heptadecafluoroundecanoate, purum, >98.0%C15H8F17NO4
FW: 589.2[852527-45-8] F3C(F2C)7 O
ON
O
O
73028-5MG 5 mg73028-25MG 25 mg
4,4,5,5,6,6,7,7,8,8,9,9,9-Tridecafluorononyl azide, 8purum, >97.0%C9H6F13N3
FW: 403.14[852527-60-7]
F3C(F2C)3 N3
77983-5MG 5 mg77983-25MG 25 mg
4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,11- 8Heptadecafluoroundecyl azide, purum, >97.0%C11H6F17N3
FW: 503.16[852527-61-8]
F3C(F2C)5 N3
97087-5MG 5 mg97087-25MG 25 mg
N-(4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,11- 8Heptadecafluoroundecyl)maleimide, purum, >97.0%C15H8F17NO2
FW: 557.2[852527-40-3]
F3C(F2C)5 N
O
O
40889-5MG 5 mg40889-25MG 25 mg
N-(4,4,5,5,6,6,7,7,8,8,9,9,9-Tridecafluorononyl) 8iodoacetamide, purum, >98.0%C11H9F13INOFW: 545.08[852527-50-5]
F3C(F2C)5HN
OI
51526-5MG 5 mg51526-25MG 25 mg
N-(4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,11- 8Heptadecafluoroundecyl)iodoacetamide, purum, >98.0%C13H9F17INOFW: 645.09[852527-48-1]
F3C(F2C)6HN
OI
55266-5MG 5 mg55266-25MG 25 mg
Fluorous Proteomics Reagents
FluoroFlash® SPE Cartridges, 2 grams, 8 cc tube, 40 μm particle size
14196-1EA-F 20 pieces
FluoroFlash® SPE Cartridges, 5 grams, 10 cc tube, 40 μm particle size
00866-1EA-F 10 pieces
FluoroFlash® SPE Cartridges, 10 grams, 60 cc tube, 40 μm particle size
08967-1EA-F 5 pieces
FluoroFlash® SPE Cartridges, 20 grams, 60 cc tube, 40 μm particle size
08966-1EA-F 2 pieces
FluoroFlash® SPE Cartridges, 20 grams, 60 cc tube, 40 μm particle size
06961-1EA-F 5 pieces
FluoroFlash® TLC Plates with F254 indicator, dimension 5 cm x 10 cm
16888-1EA-F 10 pieces
FluoroFlash® Silica Gel, ~40 μm particle size
08965-1EA-F 100 g
Fluorous Separation Media
The fluorous products are manufactured by Fluorous Technologies, Inc.. U.S. patents 6,156,896; 5,859,247; 5,777,121 and 6,673,539 may protect use of these compounds. FluoroFlash® is a registered trademark of Fluorous Technologies, Inc.
Fluorous separation using solid-phase extraction: a mixture of a nonfluorous dye (blue) and a fluorous dye (orange) are loaded on a fluorous sorbent (see left-hand test tube). The nonfluorous dye can be washed with aequeous methanol (middle test tube). The fluorous dye remains on the sorbent until the elution with a fluorophilic wash (e.g. with pure methanol, right hand test tube).
JDX01799-503201
0027
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