introduction to optimise review papers: sun...
TRANSCRIPT
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Introduction to OPTIMISE review papers:
Sun-Induced Chlorophyll Fluorescence - from instrument
characterization and measurement protocols to retrieval
methods
Presenters: Javier Pacheco-Labrador, M. Pilar Cendrero-Mateo, Helge Aasen, Shari Van Wittenberghe
COST Action ES1309 OPTIMISE
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OVERVIEW
1. MOTIVATION
2. INTRODUCTION SUN-INDUCED CHLOROPHYLL
FLUORESCENCE NOMENCLATURE
3. OPTIMISE DISSEMINATION PAPERS
4. OPTIMISE SPECIAL ISSUE
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1. MOTIVATION
▶ Scientific community interest on Sun-Induced Chlorophyll
Fluorescence (F) is skyrocketing in the last years
▶ Boosted by up-coming FLEX mission and Remote F retrievals
from meteorological satellites
Increasing
Interest
More usual
Proximal
measurements
Lack of
Experience and
Awareness
Traditional
procedures not
enough
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1. MOTIVATION
▶ Scientific community interest on Sun-Induced Chlorophyll
Fluorescence (F) is skyrocketing in the last years
▶ Boosted by up-coming FLEX mission and Remote F retrievals
from meteorological satellites
Increasing
Interest
More usual
Proximal
measurements
Lack of
Experience and
Awareness
Traditional
procedures not
enough
![Page 5: Introduction to OPTIMISE review papers: Sun …optimise.dcs.aber.ac.uk/wp-content/uploads/2018_02_28_P3...1. MOTIVATION “Traditional” Field Spectroradiometry 1. Instrumentation](https://reader036.vdocuments.us/reader036/viewer/2022080717/5f783601022c2138100bd031/html5/thumbnails/5.jpg)
1. MOTIVATION
▶ Scientific community interest on Sun-Induced Chlorophyll
Fluorescence (F) is skyrocketing in the last years
▶ Boosted by up-coming FLEX mission and Remote F retrievals
from meteorological satellites
Increasing
Interest
More usual
Proximal
measurements
Lack of
Experience and
Awareness
Traditional
procedures not
enough
![Page 6: Introduction to OPTIMISE review papers: Sun …optimise.dcs.aber.ac.uk/wp-content/uploads/2018_02_28_P3...1. MOTIVATION “Traditional” Field Spectroradiometry 1. Instrumentation](https://reader036.vdocuments.us/reader036/viewer/2022080717/5f783601022c2138100bd031/html5/thumbnails/6.jpg)
1. MOTIVATION
▶ Spectroradiometric measurements ▶ One of the least reliable of all physical measurements
(Kostkowski, 1997) ▶ Multidimensional problem
▶ Instability of measuring instruments and the uncertainty of the standards
▶ Principles and techniques used for eliminating (or reducing) measurement errors due to this multidimensionality or instability have not been widely disseminated
▶ “Traditional” Field Spectroradiometry ▶ Measurement of reflectance factors
▶ Radiometric calibration usually not needed
or not compulsory for all applications
▶ Assess strong signals (phenology, land covers…)
▶ Comparison with remote sensors with quite coarser spectral resolutions
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1. MOTIVATION
▶ “Traditional” Field Spectroradiometry 1. Instrumentation
▶ High trust on the producer specifications
▶ Lack of instrumental characterization
▶ Lack of uncertainty quantification / propagation
2. Methods ▶ Not always robust to variation in E↓
◻ Reference – Target –T –T –T –T –T –T …
▶ New platforms (towers, UAVs)
◻ Atmospheric depth effects usually ignored
▶ Many metadata still not even recorded
▶ Sun-Induced Chlorophyll Fluorescence (F) ▶ Unclear use of terminology
▶ Different retrieval methods (Robustness?)
▶ Different post-processing (understanding?)
of the signal
EXPENSIVE
*MORE
SAMPLES
*EASIER
PROCESSING
UNDER
DEVELOPMENT
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1. MOTIVATION
▶ “F-dedicated” Field Spectroradiometry
▶ F = Relative metric → f(Vegetation variability)
▶ Treatments, phenotypes, species…
▶ Phenological changes
▶ F = Absolute Radiometric Quantity
▶ Model and understand plant physiology
▶ Comparable (sensors, datasets)
MEASURING REFLECTANCE FACTORS IS NOT THE
SAME THAN MEASURING SUN INDUCED
FLUORESCENCE
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Credits: Porcar-Castell et
al. 2014 Top of Canopy
Reaction centers and
Antena
(PSII & PSI)
Chloroplast
Chlorophyll
molecule
Leaf
2. INTRODUCTION SUN-INDUCED CHLOROPHYLL
FLUORESCENCE NOMENCLATURE
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PS I - P700
Absorbs light at
longer wavelengths
(infrared)
PS II – P680
Absorbs light at
short wavelengths
(red)
PS I - P700
Re-emits light in
F740
PS II – P680
Re-emits light in
F685
Credits: Porcar-Castell et al. 2014
2. INTRODUCTION SUN-INDUCED CHLOROPHYLL
FLUORESCENCE NOMENCLATURE
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Sun-Induced Chlorophyll Fluorescence (F) is the plants light re-emission in
the red (F685) and near infrared (F740) in response to absorbed radiation.
Credits: FLEX final mission report
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maxF<685>
maxF<740>
F687
F760
Ftot
Credits: FLEX final mission report
2. INTRODUCTION SUN-INDUCED CHLOROPHYLL
FLUORESCENCE NOMENCLATURE
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• Idea (Dubrovnik):
Best practice for UAV Spectral sampling
OPTIMISE - BUS
➔ Collect and summarize the knowledge on “good”
reflectance and fluorescence (radiance) measurements
3. OPTIMISE DISSEMINATION PAPERS
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• Practice for spectral sampling
o September 2016: ITC
o October 2016: Bolzano
o November 2016: Tartu
o March 2017: Bucharest
o October 2017: Luxembourg
3. OPTIMISE DISSEMINATION PAPERS
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3. OPTIMISE DISSEMINATION PAPERS
➔ Outcome: OPTIMISE three (+2) papers (read:
manuscripts)
➔ Instrumental considerations for the measurement of sun
induced fluorescence (led by Javier)
➔ Measuring sun-induced fluorescence at different scales:
Overview over instruments, measurement setups and protocols
at leaf and canopy scale (led by Helge)
➔ Ground measurements of Solar-induced chlorophyll
fluorescence: retrievals methods and practical cases (led by
MaPi)
➔ (UAV spectral sensing systems – sensors, geometric and
radiometric data processing and best practice from particle to
pixel (Helge, Eija, Arko))
➔ (publication on UAV survey, led by Helge)
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Deadline for manuscript submissions: 31 October 2018
Keywords
● Remote Sensing
● Proximal Sensing
● Unmanned Aerial Vehicles
● Reflectance
● Fluorescence
● Spectral Information Systems
● Biogeochemical Cycles
Submission
● Open!
● Submit online at www.mdpi.com
● Published upon acceptance
● Research articles, review articles as
well as short communications are
invited
● Open access, processing charge
4. OPTIMISE SPECIAL ISSUE
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THANKS FOR YOUR
ATTENTION
QUESTIONS / REMARKS