genes & developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.dc1/qki_s… ·...

115

Upload: others

Post on 06-Dec-2020

0 views

Category:

Documents


0 download

TRANSCRIPT

Page 1: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule
Page 2: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule
Page 3: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule
Page 4: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule
Page 5: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule
Page 6: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule
Page 7: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule
Page 8: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule
Page 9: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule
Page 10: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule
Page 11: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule
Page 12: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

Supplemental Table 1

p<0.05Human (Hs683)

EntrezGene Name shQKI-1/shGFP shQKI-2/shGFP0 0 26.63 19.000 0 11.75 12.750 CDNA clone IMAGE:5267346 8.96 4.77

91316

LOC91316: Similar to bK246H3.1 (immunoglobulin lambda-like polypeptide 1, pre-B-cell specific) 7.94 3.85

8767RIPK2: receptor-interacting serine-threonine kinase 2 4.09 3.21

728705LOC728705: hypothetical protein LOC728705 3.86 2.44

0 Transcribed locus 3.79 3.95

284001CCDC57: coiled-coil domain containing 57 3.62 4.73

257044C1orf101: chromosome 1 open reading frame 101 3.54 3.33

0CDNA FLJ30490 fis, clone BRAWH2000169 3.28 2.76

1145CHRNE: cholinergic receptor, nicotinic, epsilon 3.25 2.42

728215LOC728215: similar to transmembrane protein 28 3.25 2.86

83849 SYT15: Synaptotagmin XV 3.24 3.300 Transcribed locus 3.18 2.64

79838 TMC5: transmembrane channel-like 5 3.16 2.70

144568 A2ML1: alpha-2-macroglobulin-like 1 3.13 2.77

55109AGGF1: angiogenic factor with G patch and FHA domains 1 3.09 2.86

91703 ACY3: aspartoacylase (aminocyclase) 3 3.06 2.30

258010 SVIP: small VCP/p97-interacting protein 3.01 2.30

4481MSR1: macrophage scavenger receptor 1 2.97 2.01

23250 ATP11A: ATPase, class VI, type 11A 2.96 1.71

An-Jou Angela Chen
CHEN_
Page 13: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

440934LOC440934: Hypothetical gene supported by BC008048 2.89 2.27

0 Transcribed locus 2.87 3.04

0Homo sapiens, clone IMAGE:4391558, mRNA 2.85 3.38

152641C4orf38: chromosome 4 open reading frame 38 2.79 1.88

54756 IL17RD: interleukin 17 receptor D 2.77 1.98

0 CDNA clone IMAGE:5277449 2.75 2.25

79345OR51B2: olfactory receptor, family 51, subfamily B, member 2 2.75 1.89

0 CDNA clone IMAGE:4894320 2.71 3.16

1285COL4A3: collagen, type IV, alpha 3 (Goodpasture antigen) 2.70 2.73

0 Clone FLB9413 PRO2532 2.69 2.82

441024

MTHFD2L: methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 2.68 2.77

0 0 2.63 1.76

2778 GNAS: GNAS complex locus 2.59 3.09

0 Clone HQ0097 PRO0097 2.58 1.93

0 Transcribed locus 2.55 2.02

201134CCDC46: coiled-coil domain containing 46 2.53 1.98

157657C8orf37: chromosome 8 open reading frame 37 2.52 1.60

9508ADAMTS3: ADAM metallopeptidase with thrombospondin type 1 motif, 3 2.52 2.28

84186ZCCHC7: zinc finger, CCHC domain containing 7 2.49 1.94

258010 SVIP: small VCP/p97-interacting protein 2.47 2.975332 PLCB4: phospholipase C, beta 4 2.44 2.00

Page 14: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

0

Transcribed locus, moderately similar to XP_512041.1 PREDICTED: similar to Myosin regulatory light chain 2, nonsarcomeric (Myosin RLC) [Pan troglodytes] 2.42 1.63

29763PACSIN3: protein kinase C and casein kinase substrate in neurons 3 2.41 1.84

0 0 2.40 2.04

55122C6orf166: Chromosome 6 open reading frame 166 2.37 2.06

25796 PGLS: 6-phosphogluconolactonase 2.37 2.13

0CDNA FLJ12676 fis, clone NT2RM4002383 2.35 1.90

132112RTP1: receptor (chemosensory) transporter protein 1 2.35 2.66

0 Transcribed locus 2.33 1.58

0CDNA FLJ31249 fis, clone KIDNE2005327 2.31 2.56

284098PIGW: phosphatidylinositol glycan anchor biosynthesis, class W 2.31 1.73

3082HGF: hepatocyte growth factor (hepapoietin A; scatter factor) 2.30 1.53

50861 STMN3: stathmin-like 3 2.29 1.82

727701C21orf135: chromosome 21 open reading frame 135 2.27 1.86

83658DYNLRB1: dynein, light chain, roadblock-type 1 2.24 2.37

124ADH1A: alcohol dehydrogenase 1A (class I), alpha polypeptide 2.23 2.00

0 Transcribed locus 2.21 2.20

50515CHST11: carbohydrate (chondroitin 4) sulfotransferase 11 2.21 2.25

442367 LOC442367: Hypothetical LOC442367 2.19 1.86

55825PECR: peroxisomal trans-2-enoyl-CoA reductase 2.19 1.65

258010 SVIP: small VCP/p97-interacting protein 2.18 2.42

284695 ZNF326: zinc finger protein 326 2.17 1.78

Page 15: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

728099LOC728099: hypothetical protein LOC728099 2.17 1.93

64282PAPD5: PAP associated domain containing 5 2.15 1.82

400721 /// 730051

LOC730051 /// ZNF814: zinc finger protein 814 /// similar to Zinc finger protein 418 2.13 1.74

0 0 2.13 1.62

151050FLJ23861: hypothetical protein FLJ23861 2.12 1.69

0CDNA FLJ38746 fis, clone KIDNE2012316 2.10 2.23

23095 KIF1B: kinesin family member 1B 2.10 1.54

79670ZCCHC6: Zinc finger, CCHC domain containing 6 2.09 1.66

55614C20orf23: chromosome 20 open reading frame 23 2.08 1.69

85016C11orf70: chromosome 11 open reading frame 70 2.08 1.57

257103C21orf86: Chromosome 21 open reading frame 86 2.07 1.92

2885GRB2: growth factor receptor-bound protein 2 2.06 1.80

130399 ACVR1C: activin A receptor, type IC 2.06 1.9057650 KIAA1524: KIAA1524 2.05 1.72

79969C6orf134: chromosome 6 open reading frame 134 2.05 1.58

0 CDNA clone IMAGE:4827547 2.05 2.35

Page 16: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

0CDNA FLJ30650 fis, clone CTONG2006666 2.03 1.52

540ATP7B: ATPase, Cu++ transporting, beta polypeptide 2.03 2.06

10802SEC24A: SEC24 related gene family, member A (S. cerevisiae) 2.02 2.05

91750 LIN52: lin-52 homolog (C. elegans) 2.01 1.71

0CDNA FLJ30478 fis, clone BRAWH1000167 2.00 1.82

8543 LMO4: LIM domain only 4 1.99 1.60

349152DPY19L2P2: dpy-19-like 2 pseudogene 2 (C. elegans) 1.99 1.79

0 CDNA clone IMAGE:4841343 1.98 2.29

83787ARMC10: armadillo repeat containing 10 1.98 1.78

3831 KLC1: kinesin light chain 1 1.97 1.95

246777SPESP1: sperm equatorial segment protein 1 1.97 2.04

Page 17: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

2798GNRHR: gonadotropin-releasing hormone receptor 1.96 1.66

6715

SRD5A1: steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) 1.95 1.83

4312MMP1: matrix metallopeptidase 1 (interstitial collagenase) 1.95 1.61

7690 ZNF131: zinc finger protein 131 1.94 1.57

3202 HOXA5: homeobox A5 1.93 1.90

0 Transcribed locus 1.93 2.39

Page 18: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

286097EFHA2: EF-hand domain family, member A2 1.91 1.71

2570GABRR2: gamma-aminobutyric acid (GABA) receptor, rho 2 1.91 2.33

84986ARHGAP19: Rho GTPase activating protein 19 1.90 1.85

0 Transcribed locus 1.90 1.75

55252ASXL2: additional sex combs like 2 (Drosophila) 1.89 1.85

84740MGC10981: hypothetical protein MGC10981 1.89 1.67

27284SULT1B1: sulfotransferase family, cytosolic, 1B, member 1 1.89 1.85

79633FAT4: FAT tumor suppressor homolog 4 (Drosophila) 1.89 1.72

441383LOC441383: Hypothetical gene supported by AF086559; BC065734 1.88 1.54

8711 TNK1: tyrosine kinase, non-receptor, 1 1.88 1.58831 CAST: Calpastatin 1.87 1.51

10605PAIP1: poly(A) binding protein interacting protein 1 1.86 1.84

25819CCRN4L: CCR4 carbon catabolite repression 4-like (S. cerevisiae) 1.85 1.51

317671 RFESD: Rieske (Fe-S) domain containing 1.84 1.81

79066METT10D: methyltransferase 10 domain containing 1.84 1.90

155185 AMZ1: archaemetzincin-1 1.83 1.52

6322SCML1: sex comb on midleg-like 1 (Drosophila) 1.82 1.89

84295 PHF6: PHD finger protein 6 1.82 1.92

7156 TOP3A: topoisomerase (DNA) III alpha 1.82 1.89

146330FBXL16: F-box and leucine-rich repeat protein 16 1.82 2.01

221938MMD2: monocyte to macrophage differentiation-associated 2 1.81 1.50

0 Transcribed locus 1.80 1.560 0 1.80 2.21

9223

MAGI1: membrane associated guanylate kinase, WW and PDZ domain containing 1 1.79 1.87

4163 MCC: mutated in colorectal cancers 1.79 1.670 0 1.79 1.72

348654GEN1: Gen homolog 1, endonuclease (Drosophila) 1.79 1.56

Page 19: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

3718JAK3: Janus kinase 3 (a protein tyrosine kinase, leukocyte) 1.78 1.92

27067STAU2: staufen, RNA binding protein, homolog 2 (Drosophila) 1.78 1.77

140883 ZNF280B: zinc finger protein 280B 1.78 1.7754813 KLHL28: kelch-like 28 (Drosophila) 1.77 1.736876 TAGLN: transgelin 1.77 0.57

23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07

84930MASTL: microtubule associated serine/threonine kinase-like 1.76 1.82

387893 /// 647597

LOC647597 /// SETD8: SET domain containing (lysine methyltransferase) 8 /// similar to Histone-lysine N-methyltransferase, H4 lysine-20 specific (Histone H4-K20 methyltransferase) (H4-K20-HMTase) (SET domain-containing protein 8) (PR/SET domain-containing protein 07) (PR/SET07) (PR-Set7) 1.76 1.65

26292 MYCBP: c-myc binding protein 1.76 1.54

26973CHORDC1: cysteine and histidine-rich domain (CHORD)-containing 1 1.75 1.51

222194RSBN1L: round spermatid basic protein 1-like 1.75 1.62

8106PABPN1: poly(A) binding protein, nuclear 1 1.74 1.57

10443RP11-298P3.3: phosphonoformate immuno-associated protein 5 1.74 1.59

56 ACRV1: acrosomal vesicle protein 1 1.74 1.94

0CDNA FLJ41018 fis, clone UTERU2018881 1.74 1.58

0 Transcribed locus 1.73 1.71

26770 /// 60674

GAS5 /// SNORD79: small nucleolar RNA, C/D box 79 /// growth arrest-specific 5 1.73 1.63

1376 CPT2: carnitine palmitoyltransferase II 1.73 1.74

0 CDNA: FLJ22073 fis, clone HEP11868 1.72 1.5610005 ACOT8: Acyl-CoA thioesterase 8 1.72 1.56

4915NTRK2: neurotrophic tyrosine kinase, receptor, type 2 1.72 1.69

6502SKP2: S-phase kinase-associated protein 2 (p45) 1.71 1.50

Page 20: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

93323 NY-SAR-48: sarcoma antigen NY-SAR-48 1.71 1.61

84324 CIP29: cytokine induced protein 29 kDa 1.71 1.70

1111CHEK1: CHK1 checkpoint homolog (S. pombe) 1.70 1.72

55508SLC35E3: solute carrier family 35, member E3 1.70 1.69

6497SKI: v-ski sarcoma viral oncogene homolog (avian) 1.70 1.66

0CDNA FLJ42313 fis, clone TRACH2019425 1.70 1.85

171586ABHD3: abhydrolase domain containing 3 1.69 1.57

646912LOC646912: similar to 60S ribosomal protein L7 1.69 1.71

2035EPB41: erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) 1.69 1.64

57180ACTR3B: ARP3 actin-related protein 3 homolog B (yeast) 1.68 1.66

0CDNA FLJ30661 fis, clone DFNES2000526 1.68 1.58

5914 RARA: retinoic acid receptor, alpha 1.68 1.63

64062 RBM26: RNA binding motif protein 26 1.67 1.62

24147 FJX1: four jointed box 1 (Drosophila) 1.67 1.504907 NT5E: 5'-nucleotidase, ecto (CD73) 1.67 2.02

823 CAPN1: calpain 1, (mu/I) large subunit 1.66 1.57

284701 /// 401149 /// 402483 /// 441124 /// 728624 /// 729021 /// 729033 ///

731275

FLJ14186 /// LOC284701 /// LOC441124 /// LOC728624 /// LOC729021 /// LOC729033 /// LOC731275 /// tcag7.907: hypothetical protein LOC284701 /// hypothetical gene supported by AK024248; AL137733 /// hypothetical LOC402483 /// hypothetical gene supported by AK093729; BX647918 /// hypothetical protein LOC728624 /// hypothetical protein LOC729021 /// hypothetical protein LOC729033 /// hypothetical protein LOC731275 1.66 1.56

Page 21: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

375444C5orf34: chromosome 5 open reading frame 34 1.66 1.58

5371 PML: promyelocytic leukemia 1.65 1.5954957 TXNL4B: thioredoxin-like 4B 1.65 1.61

284 ANGPT1: angiopoietin 1 1.65 1.80

84948TIGD5: tigger transposable element derived 5 1.64 1.64

84312BRMS1L: breast cancer metastasis-suppressor 1-like 1.64 1.56

382 ARF6: ADP-ribosylation factor 6 1.63 1.55

6782STCH: stress 70 protein chaperone, microsome-associated, 60kDa 1.63 1.52

549AUH: AU RNA binding protein/enoyl-Coenzyme A hydratase 1.63 1.82

23387 KIAA0999: KIAA0999 protein 1.62 1.59

84687PPP1R9B: protein phosphatase 1, regulatory (inhibitor) subunit 9B 1.62 1.53

643911 hCG_1815491: hCG1815491 1.62 1.5355500 ETNK1: ethanolamine kinase 1 1.62 1.61

0 0 1.61 1.51121457 IKIP: IKK interacting protein 1.61 1.5354856 GON4L: gon-4-like (C. elegans) 1.61 1.8211101 ATE1: arginyltransferase 1 1.61 1.61

800 CALD1: caldesmon 1 1.61 1.75

57380MRS2L: MRS2-like, magnesium homeostasis factor (S. cerevisiae) 1.60 1.60

130502TTC32: tetratricopeptide repeat domain 32 1.60 1.51

0 Transcribed locus 1.60 1.7763934 ZNF667: zinc finger protein 667 1.60 1.8456666 PANX2: pannexin 2 1.60 0.58

0MRNA; cDNA DKFZp761D2417 (from clone DKFZp761D2417) 1.60 1.53

25966C2CD2: C2 calcium-dependent domain containing 2 1.59 1.54

9043 SPAG9: sperm associated antigen 9 1.58 1.73

221150C13orf3: chromosome 13 open reading frame 3 1.57 1.66

23137SMC5: structural maintenance of chromosomes 5 1.57 1.57

80317ZKSCAN3: zinc finger with KRAB and SCAN domains 3 1.57 1.56

0 CDNA clone IMAGE:4828317 1.56 2.0155500 ETNK1: ethanolamine kinase 1 1.56 1.54

79642 ARSJ: arylsulfatase family, member J 1.55 1.72

Page 22: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

51510 CHMP5: chromatin modifying protein 5 1.55 1.58

60558GUF1: GUF1 GTPase homolog (S. cerevisiae) 1.55 1.53

57646 USP28: ubiquitin specific peptidase 28 1.54 1.51

9525VPS4B: vacuolar protein sorting 4 homolog B (S. cerevisiae) 1.54 1.53

128061C1orf131: chromosome 1 open reading frame 131 1.53 1.62

85417 CCNB3: cyclin B3 1.53 1.590 0 1.53 1.80

84172POLR1B: polymerase (RNA) I polypeptide B, 128kDa 1.53 1.51

55605 KIF21A: kinesin family member 21A 1.52 1.67

3977LIFR: leukemia inhibitory factor receptor alpha 1.52 1.98

7726 TRIM26: Tripartite motif-containing 26 1.50 2.02

7159TP53BP2: tumor protein p53 binding protein, 2 1.50 1.52

463 ZFHX3: zinc finger homeobox 3 0.66 0.39

9444QKI: quaking homolog, KH domain RNA binding (mouse) 0.65 0.39

3488IGFBP5: insulin-like growth factor binding protein 5 0.63 0.58

3176 HNMT: histamine N-methyltransferase 0.63 1.67

3488IGFBP5: insulin-like growth factor binding protein 5 0.61 0.57

10085EDIL3: EGF-like repeats and discoidin I-like domains 3 0.48 0.62

9444QKI: quaking homolog, KH domain RNA binding (mouse) 0.48 0.38

596 BCL2: B-cell CLL/lymphoma 2 0.44 0.41

9444QKI: quaking homolog, KH domain RNA binding (mouse) 0.43 0.08

51050 PI15: peptidase inhibitor 15 0.32 0.64399833 FLJ44653: FLJ44653 protein 0.31 0.13

Page 23: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

Mouse (Ink4a/Arf-/- Pten-/- astrocytes)

EntrezGene Name shQki-1/shGFP shQki-2/shGFP72313 RIKEN cDNA 2510002A14 gene -1.85 -2.3221787 Trk-fused gene -1.51 -1.812484 CD24a antigen -1.6 -1.68

66222serine (or cysteine) proteinase inhibitor, clade B, member 1a 2.79 3.02

116847proline arginine-rich end leucine-rich repeat 1.52 1.77

11475 actin, alpha 2, smooth muscle, aorta -2.53 -1.9466695 asporin 2.15 3.21

20720serine (or cysteine) proteinase inhibitor, clade E, member 2 1.7 1.96

21413 transcription factor 4 2.12 1.69

19317 quaking -2.07 -2.5

14085 fumarylacetoacetate hydrolase -1.78 -2.08

15490hydroxysteroid (17-beta) dehydrogenase 7 -1.7 -1.86

101497

pleckstrin homology domain containing, family G (with RhoGef domain) member 2 -3.07 -4.35

18008 nestin -1.64 -1.67

15958interferon-induced protein with tetratricopeptide repeats 2 -2.62 -2.35

17827 metaxin 1 -1.64 -1.7

27047 osteomodulin 2.27 2.41

23954NIMA (never in mitosis gene a)-related expressed kinase 3 -1.62 -1.87

19107DnaJ (Hsp40) homolog, subfamily C, member 3 2.23 1.74

18295 osteoglycin 1.81 2.1318295 osteoglycin 1.78 1.7

Page 24: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

381406 /// 76367TP53 regulating kinase /// similar to mNori-2p -6.51 -7.96Transcribed locus -2.44 -2.72

238799 Transportin 1 -1.76 -2.1

105594 RIKEN cDNA C330003B14 gene -1.85 -1.79

171286

solute carrier family 12 (potassium/chloride transporters), member 8 -2.08 -2.36

56811 dickkopf homolog 2 (Xenopus laevis) 2.15 2.2

17082 interleukin 1 receptor-like 1 1.5 1.5121345 transgelin -3.54 -2.49

21413 transcription factor 4 2.02 1.6894346 transmembrane protein 40 -5.89 -11.67

212999transportin 2 (importin 3, karyopherin beta 2b) -1.84 -2.17

13007 cysteine and glycine-rich protein 1 -1.86 -1.79

13007 cysteine and glycine-rich protein 1 -1.73 -1.72

192231hexamethylene bis-acetamide inducible 1 -1.84 -1.65

434079 /// 544891hypothetical LOC434079 /// hypothetical protein LOC544891 -2.59 -4.09

18811 /// 18812 /// 26421

proliferin /// proliferin 2 /// mitogen regulated protein, proliferin 3 -2.86 -3.1

18294 8-oxoguanine DNA-glycosylase 1 -1.62 -1.54

270066 hypothetical protein 6030458H05 -1.71 -1.55

21413 transcription factor 4 2.75 2.14

21413 transcription factor 4 2.8 2.1912484 CD24a antigen -1.64 -1.94

Page 25: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

14264 fibromodulin 1.57 2.23

208643 /// 547244

eukaryotic translation initiation factor 4, gamma 1 /// similar to Eif4g1 protein 1.96 1.71

12484 CD24a antigen -1.62 -1.71

22228uncoupling protein 2 (mitochondrial, proton carrier) -1.66 -1.75

66695 asporin 2.44 3.26

235424 /// 328825 /// 67025

ribosomal protein L11 /// similar to 60S ribosomal protein L11 /// hypothetical gene supported by AK011800; BC025077; NM_025919 -3.16 -3.32

24047 chemokine (C-C motif) ligand 19 -1.5 -1.6311431 Acid phosphatase 1, soluble -2.43 -2.74

13808 RIKEN cDNA 1700029K24 gene -1.65 -1.6

11906 AT motif binding factor 1 -1.82 -1.76

26407mitogen activated protein kinase kinase kinase 4 -2.19 -2.39

21949tumor necrosis factor (ligand) superfamily, member 8 -3.59 -4.11

71145 RIKEN cDNA 4933425F03 gene 2.07 1.75

226548anterior pharynx defective 1a homolog (C. elegans) -2.2 -2.22

19090protein kinase, DNA activated, catalytic polypeptide -1.72 -1.85

11643 A kinase (PRKA) anchor protein 4 -2.7 -2.79MRNA similar to RIKEN cDNA 9030624G23 gene (cDNA clone MGC:36379 IMAGE:4988668), complete cds -2.28 -2.29

Mus musculus, clone IMAGE:5367221, mRNA, partial cds -28.67 -32.4

12834 procollagen, type VI, alpha 2 1.66 1.59

21769 testis expressed gene 27 -2.67 -3.71

98932myosin, light polypeptide 9, regulatory -6.68 -3.11

Page 26: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

272589 leucine rich repeat containing 35 -1.62 -1.6

13184 /// 212871demilune cell and parotid protein /// cDNA sequence BC005655 1.92 1.69

71458 Bcl6 interacting corepressor -1.66 -1.9278749 RIKEN cDNA 4631422O05 gene -1.63 -1.73

76788 RIKEN cDNA 2410127E18 gene -2.41 -3

gb:BQ176656 /DB_XREF=gi:20352148 /DB_XREF=UI-M-DJ2-bvz-e-24-0-UI.s1 /CLONE=UI-M-DJ2-bvz-e-24-0-UI /FEA=EST /CNT=54 /TID=Mm.28960.1 /TIER=Stack /STK=33 /UG=Mm.28960 /LL=106589 /UG_GENE=AI449023 /UG_TITLE=expressed sequence AI449023 -1.59 -1.67

245522 cDNA sequence AK129302 -2.01 -1.64

70827

amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 3 (human) 1.54 1.57

232933 RIKEN cDNA C530028I08 gene -1.72 -1.9

243853 fukutin related protein -5.86 -5.33

18810 plectin 1 1.68 1.81

245688 retinoblastoma binding protein 7 -12.54 -12.3514083 PTK2 protein tyrosine kinase 2 -4.64 -3.86

223697 RIKEN cDNA B230369L08 gene -2.94 -3.55

241308Ral GEF with PH domain and SH3 binding motif 1 -1.53 -1.56

319707 RIKEN cDNA C430002N11 gene -1.77 -1.81

Page 27: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

gb:BQ128572 /DB_XREF=gi:20202483 /DB_XREF=ii24b06.x1 /CLONE=IMAGE:5942363 /FEA=EST /CNT=5 /TID=Mm.220828.1 /TIER=ConsEnd /STK=4 /UG=Mm.220828 /UG_TITLE=ESTs, Highly similar to RL31_HUMAN 60S RIBOSOMAL PROTEIN L3 (M.musculus) -69.61 -65.84

75617 Ribosomal protein S25 -33.5 -42.77

19777 Expressed sequence C80913 -1.91 -1.97

gb:BG069476 /DB_XREF=gi:12551968 /DB_XREF=H3075H12-3 /CLONE=H3075H12 /FEA=EST /CNT=3 /TID=Mm.26155.1 /TIER=ConsEnd /STK=2 /UG=Mm.26155 /UG_TITLE=ESTs, Moderately similar to laminin B2 (M.musculus) -5.4 -7.21

225825 CD226 antigen -2.73 -3.54

12614Cadherin EGF LAG seven-pass G-type receptor 1 -3.21 -3.33Adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530021M07 product:unclassifiable, full insert sequence -2.08 -2.06

52592breast cancer metastasis-suppressor 1-like -4.65 -4.78

236604 RIKEN cDNA 4933439C20 gene -2.14 -3.23

338372mitogen-activated protein kinase kinase kinase 9 -2.79 -4.56

gb:BB157850 /DB_XREF=gi:8813780 /DB_XREF=BB157850 /CLONE=A130038D11 /FEA=EST /CNT=7 /TID=Mm.133604.1 /TIER=ConsEnd /STK=5 /UG=Mm.133604 /UG_TITLE=ESTs -8.04 -5.46

Page 28: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

244219 zinc finger protein 668 -1.85 -1.97

Mus musculus, clone IMAGE:3371217, mRNA -40.16 -37.14

19933 /// 233992 /// 268676 /// 269156 /// 381312 /// 382525 /// 382843 /// 383745 /// 432513 /// 432665 /// 432725 /// 432801 /// 432869 /// 433125 /// 433319 /// 433571 /// 433630 /// 434067 /// 434163 /// 434253 /// 545172 /// 545226 /// 545254 /// 545423 /// 545572 /// 545755 /// 545877 /// 546074 /// 546121 /// 547283

ribosomal protein L21 /// similar to 60S ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to 60S ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to 60S ribosomal protein L21 /// similar to 60S ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to 60S ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to 60S ribosomal protein L21 /// similar to ribosomal protein L21 /// similar to ribosomal protein -43.02 -36.71Transcribed locus -16.26 -15.36

140723Calcium channel, voltage-dependent, gamma subunit 5 -9.63 -6.78

gb:C76431 /DB_XREF=gi:2516761 /DB_XREF=C76431 /CLONE=J0010E07 /FEA=EST /CNT=2 /TID=Mm.221076.1 /TIER=ConsEnd /STK=2 /UG=Mm.221076 /UG_TITLE=ESTs, Weakly similar to ZF90 MOUSE ZINC FINGER PROTEIN 90 (M.musculus) -2 -1.89

Page 29: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

68631 crystallin, lamda 1 -2.09 -1.64

195209 gene model 22, (NCBI) -1.61 -1.67

Page 30: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

Supplemental Table 2

Hs683

shQk1.1 shQk1.2 shQk2.1 shQk2.2 shGFP.1 shGFP.2 ΔLMR ΔLMR

Probe Id Annotation Slide 1 Slide 2 Slide 3 Slide 4 Slide 5 Slide 6 Count shQk1 vs GFPshQk2 vs GFP MAX13177 hsa-miR-143 -2.49 -2.74 -2.05 -1.90 -1.41 -1.78 6 -1.02 -0.37 1.023980 hsa-miR-7 1.32 1.11 0.59 0.91 0.23 0.18 6 1.01 0.54 1.01

11052 hsa-miR-31 -2.94 -4.08 -3.37 -3.80 -2.13 -3.47 6 -0.71 -0.78 0.7842486 hsa-miR-149* 0.00 -0.38 -1.26 -1.21 -0.46 -0.51 6 0.29 -0.75 0.7542701 hsa-miR-30c-2* 0.25 0.59 -0.25 -0.07 -0.45 -0.19 6 0.74 0.16 0.7410997 hsa-miR-19a 0.77 0.29 1.02 1.41 1.30 1.19 6 -0.71 -0.03 0.7127217 hsa-miR-34a -2.13 -2.58 -2.82 -2.85 -1.68 -2.59 6 -0.22 -0.70 0.7017295 hsa-miR-583 -0.03 0.39 0.63 0.83 0.21 -0.12 6 0.14 0.69 0.6942554 hsa-miR-923 -1.10 -0.04 -1.32 -0.90 -1.55 -0.96 6 0.69 0.15 0.6942644 hsa-miR-18b 0.51 0.19 0.56 1.29 0.96 1.08 6 -0.67 -0.09 0.6719580 hsa-let-7i -1.48 -1.12 -1.06 -0.77 -0.76 -0.52 6 -0.66 -0.28 0.6642696 hsa-miR-943 1.00 0.48 0.01 0.31 0.14 0.03 6 0.65 0.07 0.6542785 hsa-miR-921 -0.25 0.01 -0.53 -0.17 -0.72 -0.78 6 0.63 0.40 0.6310995 hsa-miR-199a-3p/hsa-miR-199b-3p-2.64 -3.42 -3.07 -2.90 -1.97 -2.83 6 -0.63 -0.59 0.6311023 hsa-miR-222 -0.02 0.02 0.51 0.53 0.64 0.59 6 -0.62 -0.09 0.6231026 hsa-miR-101 -0.36 -0.55 -0.44 0.12 0.02 0.30 6 -0.61 -0.32 0.614040 hsa-miR-9 -1.38 -0.61 -1.06 -0.97 -0.26 -0.60 6 -0.57 -0.59 0.59

42762 hsa-miR-665 -0.41 0.12 -0.59 -0.49 -0.89 -0.58 6 0.59 0.19 0.5942591 hsa-miR-634 1.42 0.29 0.74 0.71 0.00 0.55 6 0.58 0.45 0.5813140 hsa-miR-138 0.41 0.46 1.28 1.17 1.11 0.86 6 -0.55 0.24 0.5542641 hsa-miR-145 -1.70 -1.58 -1.09 -1.21 -1.15 -1.04 6 -0.54 -0.05 0.5442920 hsa-miR-29a* 0.00 -0.32 0.04 0.51 0.55 0.22 6 -0.54 -0.11 0.5410986 hsa-miR-193a-3p -1.11 -1.71 -1.15 -0.90 -0.59 -1.15 6 -0.54 -0.16 0.5442539 hsa-miR-933 0.67 0.51 -0.12 0.33 0.23 -0.13 6 0.54 0.05 0.5442679 hsa-miR-642 0.62 0.18 -0.46 -0.51 -0.16 -0.12 6 0.54 -0.34 0.5417463 hsa-miR-151-3p 0.29 0.60 0.87 0.67 0.20 0.25 6 0.22 0.54 0.5417869 miRPlus_17869 -0.52 -0.30 -0.63 -0.50 -0.83 -1.07 6 0.54 0.38 0.54

LogMedianRatios

An-Jou Angela Chen
An-Jou Angela Chen
CHEN_
An-Jou Angela Chen
Page 31: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42650 hsa-miR-17 0.84 0.37 0.80 1.37 1.30 0.96 6 -0.53 -0.05 0.5311041 hsa-miR-29c -0.50 -0.86 -0.34 -0.36 -0.08 -0.26 6 -0.51 -0.17 0.5110998 hsa-miR-19b 0.44 -0.14 0.22 0.69 0.80 0.50 6 -0.50 -0.20 0.5019596 hsa-miR-30d -0.15 0.06 0.92 0.30 0.38 -0.15 6 -0.16 0.49 0.4929562 hsa-miR-199a-5p -1.64 -2.46 -1.63 -2.29 -0.99 -2.14 6 -0.48 -0.40 0.4819004 hsa-let-7c 0.16 -0.43 -0.53 0.36 0.35 0.34 6 -0.48 -0.43 0.4842856 miRPlus_42856 -0.42 -0.53 -0.79 -0.68 -0.06 -0.44 6 -0.22 -0.48 0.4842968 hsa-miR-202 -0.88 -0.56 -1.20 -1.35 -1.10 -1.30 6 0.48 -0.07 0.4827720 hsa-miR-15a 0.50 0.21 0.21 1.20 0.91 0.72 6 -0.46 -0.11 0.4642589 hsa-miR-509-3-5p -0.39 -0.36 -0.95 -0.98 -0.82 -0.86 6 0.46 -0.13 0.465250 hsa-miR-105 -0.04 0.00 0.07 0.53 0.44 0.43 6 -0.45 -0.14 0.45

42699 hsa-miR-625* 1.38 0.14 0.26 0.20 0.63 0.74 6 0.07 -0.45 0.4542581 hsa-miR-513a-5p 0.10 0.03 -0.04 -0.46 -0.47 -0.30 6 0.45 0.14 0.455740 hsa-miR-21 1.55 0.22 0.86 0.33 0.93 1.15 6 -0.16 -0.45 0.45

28431 miRPlus_28431 0.19 -0.29 -0.70 -1.13 -0.53 -0.41 6 0.42 -0.44 0.4442487 miRPlus_42487 -0.05 0.33 -0.29 -0.83 -0.06 -0.18 6 0.26 -0.44 0.4417752 hsa-let-7f -0.65 -1.17 -0.94 -0.95 -0.60 -0.42 6 -0.40 -0.44 0.4442727 hsa-miR-668 0.05 0.17 -0.34 -0.39 -0.43 0.56 6 0.04 -0.44 0.4442825 hsa-miR-888* 0.89 0.54 0.35 0.32 0.36 0.20 6 0.43 0.05 0.4311040 hsa-miR-29b 0.32 -0.50 0.18 0.17 0.54 0.14 6 -0.43 -0.16 0.4342761 hsa-miR-675 -1.05 -0.44 -0.89 -0.93 -0.53 -0.46 6 -0.25 -0.42 0.424700 hsa-miR-140-5p -0.16 -1.30 -0.66 -0.49 -0.36 -0.29 6 -0.40 -0.25 0.40

10972 hsa-miR-181b 0.30 0.39 0.55 1.04 0.40 0.38 6 -0.05 0.40 0.4010985 hsa-miR-191 -0.49 -0.40 -0.29 -0.02 -0.04 -0.06 6 -0.39 -0.11 0.3942735 hsa-miR-371-5p -1.37 -1.22 -1.77 -1.89 -1.37 -1.52 6 0.14 -0.39 0.3942588 hsa-miR-18a 0.52 0.22 0.93 0.83 0.69 0.83 6 -0.39 0.12 0.3942958 hsa-miR-628-3p 0.13 0.28 -0.25 -0.49 -0.14 -0.22 6 0.38 -0.19 0.3842869 hsa-miR-936 -2.91 -3.02 -2.33 -2.61 -2.32 -2.85 6 -0.38 0.11 0.3817909 hsa-miR-31* -0.66 -1.41 -1.23 -0.99 -0.68 -0.79 6 -0.30 -0.37 0.3711048 hsa-miR-30a -0.36 -0.32 0.14 0.12 -0.11 -0.38 6 -0.10 0.37 0.3711135 hsa-miR-503 -0.16 -0.40 -1.02 -1.00 -0.72 -0.56 6 0.36 -0.37 0.3717522 hsa-miR-658 -0.16 0.01 -0.03 -0.28 -0.42 -0.46 6 0.36 0.29 0.3611175 hsa-miR-525-5p 0.05 -0.29 -0.51 -0.43 -0.15 -0.06 6 -0.01 -0.36 0.3642806 hsa-miR-886-3p 1.85 1.60 1.27 1.61 1.64 1.09 6 0.36 0.08 0.36

Page 32: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42724 hsa-miR-34b 0.76 0.24 0.17 0.07 0.19 0.10 6 0.35 -0.02 0.3510138 hsa-miR-130a -0.72 -0.40 -0.37 -0.04 -0.03 -0.39 6 -0.35 0.01 0.3517836 hsa-miR-30b* -0.47 -0.37 -0.49 -0.76 -0.86 -0.67 6 0.35 0.15 0.3510967 hsa-miR-16 1.34 0.36 0.36 0.60 0.99 0.66 6 0.02 -0.35 0.3527898 hsa-miR-768-3p 0.48 0.85 0.38 0.30 0.25 0.37 6 0.35 0.03 0.3511177 hsa-miR-518a-5p/hsa-miR-5270.03 0.12 -0.39 -0.11 -0.27 -0.27 6 0.34 0.02 0.3411074 hsa-miR-34c-5p -2.32 -2.50 -2.19 -2.52 -1.71 -2.43 6 -0.34 -0.29 0.3413175 hsa-miR-27b -0.03 -0.55 0.03 0.27 0.22 -0.12 6 -0.34 0.10 0.3442929 hsa-miR-25* -1.28 -0.94 -1.52 -1.26 -0.99 -1.12 6 -0.05 -0.33 0.3342526 miRPlus_42526 0.03 0.65 0.51 -0.66 0.01 0.01 6 0.33 -0.08 0.3327378 hsa-miR-374a 1.36 0.17 0.61 1.29 1.08 1.10 6 -0.33 -0.14 0.3342831 hsa-miR-28-5p 0.72 0.33 0.70 0.57 0.97 0.73 6 -0.33 -0.22 0.3342529 hsa-miR-939 0.01 -0.64 -0.36 -0.87 -0.91 -0.36 6 0.32 0.02 0.3210987 hsa-miR-193b 1.18 0.92 1.22 1.08 0.72 0.95 6 0.22 0.32 0.3242649 hsa-miR-20a 1.93 0.41 0.80 1.05 1.24 1.24 6 -0.07 -0.32 0.3242630 hsa-miR-140-3p -1.99 -2.07 -2.16 -2.15 -1.59 -2.10 6 -0.18 -0.31 0.3113147 hsa-miR-96 0.73 0.20 0.27 0.84 0.63 0.91 6 -0.31 -0.22 0.3142749 hsa-miR-659 -1.14 -0.78 -0.99 -0.96 -1.25 -1.28 6 0.31 0.29 0.3129575 hsa-miR-32* 0.65 0.51 0.25 0.53 0.04 0.52 6 0.30 0.11 0.3011014 hsa-miR-214 -2.16 -1.98 -2.22 -2.12 -1.53 -2.21 6 -0.20 -0.30 0.3031057 hsa-miR-576-3p 0.60 -0.19 0.17 -0.28 -0.22 0.04 6 0.29 0.03 0.2942652 hsa-miR-584 -0.50 -0.50 -0.77 -0.42 -0.27 -0.33 6 -0.20 -0.29 0.2927559 hsa-miR-744 -0.12 0.36 -0.03 -0.06 -0.47 0.13 6 0.29 0.13 0.2917952 miRPlus_17952 -0.72 0.16 -0.24 -0.23 -0.53 -0.52 6 0.24 0.29 0.2911020 hsa-miR-22 1.05 -0.28 0.45 0.11 0.13 0.06 6 0.29 0.18 0.2917904 hsa-miR-185* -0.02 0.33 -0.20 0.04 -0.32 0.06 6 0.28 0.05 0.2842442 hsa-miR-498 -0.38 -0.29 -0.47 -0.37 -0.27 -0.01 6 -0.20 -0.28 0.2842671 hsa-miR-298 -0.17 -0.04 -0.25 -0.50 -0.53 -0.23 6 0.28 0.01 0.2817848 miRPlus_17848 1.24 1.19 1.25 1.08 1.01 0.86 6 0.28 0.23 0.2842538 hsa-miR-196a* 0.08 0.17 -0.31 0.25 -0.14 -0.15 6 0.27 0.11 0.2742571 hsa-miR-129* 0.63 -0.34 -0.06 -0.17 0.29 0.04 6 -0.02 -0.27 0.2711045 hsa-miR-302c* -0.23 0.11 0.22 0.42 0.16 0.26 6 -0.27 0.11 0.2742751 hsa-miR-720 0.99 0.72 0.53 0.59 0.54 0.64 6 0.27 -0.03 0.2713137 hsa-miR-519c-5p/hsa-miR-519b-5p/hsa-miR-523*/hsa-miR-518e*/hsa-miR-522*/hsa-miR-519a*-1.60 -1.06 -1.65 -1.64 -1.38 -1.37 6 0.05 -0.27 0.27

Page 33: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

11078 hsa-miR-365 0.15 -0.48 0.00 0.60 -0.08 0.28 6 -0.26 0.20 0.2642962 hsa-miR-193b* -0.77 -0.53 -0.36 -0.26 -0.87 -0.27 6 -0.08 0.26 0.2627672 hsa-miR-615-3p 0.83 0.51 0.41 0.46 0.62 0.75 6 -0.02 -0.26 0.2627544 hsa-miR-363* 0.61 1.11 1.17 0.81 0.72 0.75 6 0.12 0.25 0.2514306 hsa-miR-381 -0.40 -0.30 -0.30 -0.49 -0.68 -0.52 6 0.25 0.21 0.2542950 hsa-miR-24-2* -1.02 -1.74 -1.57 -1.03 -0.96 -1.30 6 -0.25 -0.17 0.2511027 hsa-miR-23b -0.58 0.09 0.08 0.23 0.18 -0.18 6 -0.25 0.15 0.2542832 hsa-miR-638 -0.54 -0.37 -0.86 -0.78 -0.57 -0.57 6 0.12 -0.24 0.2442783 hsa-miR-197 -0.13 -0.07 -0.32 -0.34 -0.38 -0.30 6 0.24 0.01 0.2410925 hsa-miR-10b 0.73 0.60 1.24 0.84 0.78 0.82 6 -0.14 0.24 0.2417882 hsa-miR-20b* 0.44 0.69 0.75 0.86 0.53 0.61 6 -0.01 0.24 0.2442575 hsa-miR-24-1* -0.38 -0.29 0.03 -0.27 -0.31 -0.40 6 0.02 0.24 0.2411182 hsa-miR-98 -0.04 -0.70 -0.61 -0.42 -0.32 -0.24 6 -0.09 -0.24 0.2442900 hsa-miR-220b -0.03 0.16 0.17 0.21 0.33 0.28 6 -0.24 -0.12 0.2417280 hsa-miR-15b 0.20 0.89 0.70 0.83 0.78 0.78 6 -0.23 -0.02 0.2317885 hsa-miR-886-5p 0.84 1.63 1.34 1.55 1.24 1.19 6 0.02 0.23 0.2342513 hsa-miR-300 0.11 -0.23 -0.48 -0.40 -0.31 -0.11 6 0.15 -0.23 0.2313132 hsa-miR-519e* -0.45 -0.67 -0.90 -0.82 -0.78 -0.79 6 0.22 -0.08 0.2213143 hsa-miR-301a 0.22 -0.38 -0.05 0.03 0.21 0.07 6 -0.22 -0.15 0.2210919 hsa-miR-103 0.90 0.48 0.30 0.62 0.70 0.67 6 0.00 -0.22 0.2242711 hsa-miR-887 0.43 -0.04 0.24 -0.12 0.33 0.23 6 -0.09 -0.22 0.2242745 miRPlus_42745 -0.80 -0.57 -0.96 -0.61 -0.82 -0.98 6 0.22 0.11 0.2218739 hsa-miR-186 0.74 0.69 0.38 0.79 0.44 0.55 6 0.22 0.09 0.2217506 hsa-miR-24 -0.15 -0.63 -0.33 0.01 -0.17 -0.18 6 -0.22 0.01 0.2227560 miRPlus_27560 -0.65 -0.47 -0.97 -0.76 -0.70 -0.85 6 0.22 -0.09 0.2242739 hsa-miR-339-5p 1.20 0.70 0.92 1.07 0.56 1.01 6 0.17 0.21 0.2110964 hsa-miR-155 -0.03 0.72 0.42 0.58 0.14 0.42 6 0.07 0.21 0.2117888 hsa-let-7a* 0.38 0.21 0.72 0.59 0.51 0.50 6 -0.21 0.15 0.2142820 hsa-miR-302d* -2.12 -2.43 -2.42 -2.64 -2.23 -2.42 6 0.05 -0.21 0.2110975 hsa-miR-182 -0.31 -0.41 -0.63 -0.54 -0.60 -0.16 6 0.02 -0.21 0.2111022 hsa-miR-221 -0.68 0.00 -0.25 0.20 -0.08 -0.20 6 -0.21 0.11 0.2114285 hsa-miR-487b 0.06 0.40 -0.05 0.16 0.16 -0.11 6 0.20 0.03 0.2011224 hsa-miR-30e* 0.71 0.53 0.60 0.51 0.72 0.79 6 -0.14 -0.20 0.2017878 hsa-miR-193a-5p -1.31 -0.84 -1.41 -1.06 -1.03 -1.51 6 0.20 0.04 0.20

Page 34: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42640 hsa-miR-20b 0.50 0.12 0.40 0.81 0.57 0.44 6 -0.20 0.10 0.2042994 hsa-miR-620 0.91 0.28 0.49 0.07 0.24 0.56 6 0.19 -0.12 0.1942917 hsa-miR-551b 0.81 1.06 1.02 0.46 0.72 0.77 6 0.19 0.00 0.1929852 hsa-miR-9* -0.58 0.08 -0.61 0.04 -0.42 -0.45 6 0.19 0.15 0.1917668 hsa-miR-552 -1.15 -0.20 -0.91 -0.96 -0.78 -0.95 6 0.19 -0.07 0.1911163 hsa-miR-519d 1.18 0.56 1.03 0.39 1.05 0.74 6 -0.03 -0.19 0.1910978 hsa-miR-184 -0.45 -0.42 -0.89 -0.60 -0.74 -0.50 6 0.18 -0.12 0.1842914 hsa-miR-550 0.74 0.58 0.82 0.89 0.55 0.80 6 -0.01 0.18 0.1842793 miRPlus_42793 -0.85 -0.50 -0.95 -0.94 -0.99 -0.71 6 0.18 -0.09 0.1842467 hsa-miR-129-5p -0.22 0.39 0.10 -0.40 -0.02 -0.16 6 0.18 -0.06 0.1827533 hsa-miR-320a 0.00 1.09 0.86 0.59 0.41 0.68 6 0.00 0.17 0.1742550 hsa-miR-516a-5p 0.09 0.12 -0.02 -0.03 -0.08 -0.06 6 0.17 0.04 0.1714302 hsa-miR-374b -0.15 -0.51 -0.55 0.10 -0.20 -0.12 6 -0.17 -0.07 0.1742459 hsa-let-7e -0.25 -0.09 -0.38 0.00 -0.21 -0.47 6 0.17 0.15 0.1742531 hsa-miR-602 -1.40 -0.65 -1.16 -1.44 -1.03 -1.24 6 0.11 -0.17 0.1717748 hsa-let-7a 0.55 -0.32 0.06 -0.17 0.04 0.19 6 0.00 -0.17 0.1713131 hsa-miR-518c* -0.85 -0.51 -0.16 -0.56 -0.56 -0.46 6 -0.17 0.15 0.1742965 hsa-miR-424 0.78 0.07 0.19 0.39 0.30 0.22 6 0.16 0.03 0.1628966 hsa-miR-574-3p 0.68 0.38 0.04 0.39 0.34 0.41 6 0.15 -0.16 0.1617565 hsa-miR-30b -0.16 -0.33 -0.31 -0.35 -0.09 -0.25 6 -0.07 -0.16 0.1617859 hsa-miR-200b* -0.50 -0.86 -1.17 -0.54 -0.69 -0.70 6 0.02 -0.16 0.1627540 hsa-miR-198 0.11 0.23 0.24 0.05 -0.01 0.04 6 0.16 0.13 0.1642537 hsa-miR-520d-5p -0.36 0.03 -0.68 -0.25 -0.21 -0.40 6 0.14 -0.16 0.1642532 hsa-miR-22* -0.04 -0.25 -0.06 0.02 0.11 -0.09 6 -0.16 -0.03 0.1642540 hsa-miR-494 -0.27 -0.04 -0.34 0.10 -0.20 -0.35 6 0.12 0.15 0.1542648 hsa-miR-106a 1.10 0.56 0.81 0.97 0.86 0.62 6 0.09 0.15 0.1517573 hsa-miR-625 0.10 0.46 0.39 0.20 0.23 0.62 6 -0.15 -0.13 0.1519581 hsa-miR-100 0.88 0.87 1.03 1.04 0.99 0.77 6 0.00 0.15 0.1517955 miRPlus_17955 -1.23 -0.61 -1.03 -0.65 -0.83 -0.72 6 -0.15 -0.06 0.1517377 hsa-miR-600 0.31 0.33 0.43 0.31 0.22 0.24 6 0.09 0.14 0.1442708 hsa-miR-99a -0.35 -0.43 -0.26 -0.28 -0.29 -0.54 6 0.03 0.14 0.1442521 miRPlus_42521 -0.55 -0.23 -0.80 -0.46 -0.35 -0.63 6 0.10 -0.14 0.1417953 hsa-miR-183* -0.14 -0.48 -0.47 -0.47 -0.41 -0.26 6 0.02 -0.14 0.145560 hsa-miR-185 -0.18 0.00 0.01 -0.25 -0.23 -0.22 6 0.14 0.10 0.14

Page 35: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

27565 hsa-miR-423-5p -0.06 0.30 0.13 -0.13 -0.04 0.01 6 0.13 0.01 0.1330787 hsa-miR-125b -0.21 -0.56 -0.67 -0.16 -0.23 -0.33 6 -0.10 -0.13 0.1342682 hsa-miR-25 0.43 0.56 0.39 1.00 0.39 0.73 6 -0.06 0.13 0.1310923 hsa-miR-107 0.34 0.30 0.14 0.88 0.49 0.43 6 -0.13 0.05 0.1332825 hsa-miR-620 0.92 0.44 0.95 0.45 0.46 0.69 6 0.11 0.13 0.1342865 hsa-miR-181a -0.04 0.15 -0.11 0.42 0.00 0.37 6 -0.13 -0.03 0.1342730 hsa-miR-423-3p 0.45 0.69 0.64 0.85 0.50 0.89 6 -0.13 0.05 0.1342798 hsa-miR-549 -0.83 -1.23 -1.07 -1.29 -1.00 -1.31 6 0.13 -0.02 0.1327740 hsa-miR-574-5p 0.00 0.12 0.41 0.08 0.14 0.24 6 -0.13 0.06 0.1319593 hsa-miR-27a 0.77 0.44 0.46 0.88 0.94 0.51 6 -0.12 -0.05 0.1214301 hsa-miR-361-5p 0.06 0.46 -0.02 0.73 0.29 0.47 6 -0.12 -0.03 0.1230687 hsa-miR-93 0.58 0.76 0.30 1.20 0.50 0.76 6 0.04 0.12 0.1242744 hsa-miR-23a 0.27 -0.27 -0.11 -0.10 -0.04 0.06 6 0.00 -0.11 0.1142542 hsa-miR-589 -0.51 -0.04 -0.37 -0.24 -0.46 -0.30 6 0.10 0.07 0.1010936 hsa-miR-130b 0.77 0.68 0.59 0.53 0.59 0.73 6 0.07 -0.10 0.1028302 miRPlus_28302 -0.10 0.37 -0.04 0.16 0.42 -0.11 6 -0.02 -0.10 0.1013148 hsa-miR-195 -0.24 -0.13 -0.31 -0.20 0.05 -0.36 6 -0.02 -0.10 0.1028150 hsa-miR-765 -0.12 -0.02 -0.07 0.14 0.07 -0.01 6 -0.10 0.01 0.1028191 hsa-miR-30e 0.10 -0.35 -0.42 -0.03 -0.04 -0.22 6 0.00 -0.10 0.1029502 hsa-let-7b -0.60 0.10 -0.47 -0.11 -0.04 -0.35 6 -0.05 -0.10 0.1011030 hsa-miR-26a -0.34 -0.35 -0.63 0.04 -0.24 -0.54 6 0.04 0.10 0.1042872 hsa-miR-138-1* 0.14 0.85 0.71 0.55 0.67 0.51 6 -0.09 0.04 0.0911105 hsa-miR-378 -0.24 -0.30 -0.31 -0.09 -0.21 -0.15 6 -0.09 -0.02 0.0942923 hsa-miR-30c -0.18 -0.20 -0.11 0.08 0.03 -0.24 6 -0.09 0.09 0.0919582 hsa-miR-106b 0.92 0.42 0.62 0.81 0.78 0.72 6 -0.08 -0.03 0.0829872 hsa-miR-340 0.42 0.25 0.41 0.33 0.36 0.22 6 0.05 0.08 0.0810977 hsa-miR-183 0.15 -0.12 0.22 0.12 0.08 0.11 6 -0.08 0.07 0.0842564 hsa-miR-26b -0.07 -0.02 -0.13 -0.22 -0.10 -0.11 6 0.06 -0.06 0.0621757 hsa-miR-766 -0.14 0.22 0.34 -0.09 0.23 -0.12 6 -0.02 0.06 0.0617750 hsa-let-7d -1.01 -1.19 -1.02 -1.03 -1.09 -1.08 6 -0.02 0.06 0.0617927 hsa-miR-491-3p 0.16 0.73 0.43 0.38 0.56 0.36 6 -0.01 -0.06 0.0611184 hsa-miR-99b -1.01 -0.93 -1.06 -1.08 -0.83 -1.23 6 0.06 -0.04 0.0642818 hsa-miR-597 -0.96 -0.55 -1.02 -0.31 -0.68 -0.76 6 -0.03 0.05 0.0517608 hsa-miR-425 0.53 0.44 0.54 0.26 0.47 0.42 6 0.05 -0.04 0.05

Page 36: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

10928 hsa-miR-125a-5p -0.77 -0.60 -0.66 -0.73 -0.68 -0.79 6 0.04 0.03 0.0442524 hsa-miR-21* 0.94 0.82 0.61 1.10 0.89 0.88 6 0.00 -0.03 0.0311260 hsa-miR-151-5p 0.33 0.11 0.25 0.21 0.15 0.29 6 0.00 0.01 0.0117863 hsa-miR-934 -0.07 -0.35 -0.24 -0.19 -0.21 -0.21 6 0.00 0.00 0.0042769 hsa-let-7b* -0.12 0.31 0.09 0.36 NA 0.13 542573 hsa-miR-1 0.11 0.18 -0.66 -0.29 -0.09 NA 517854 hsa-miR-106b* 0.53 0.69 0.35 0.69 NA 0.57 513485 hsa-miR-10a 0.49 0.23 0.75 0.51 NA 0.15 517942 hsa-miR-125a-3p 0.42 0.34 0.52 0.52 NA 0.40 54610 hsa-miR-126 1.12 0.80 1.06 1.00 NA 0.99 5

19585 hsa-miR-148b -0.05 -0.25 -0.18 -0.04 NA 0.28 517676 hsa-miR-152 -0.82 -0.81 -0.92 -0.62 NA -0.37 519588 hsa-miR-17* 0.28 0.31 0.62 0.75 NA 0.69 511013 hsa-miR-181a* 0.53 0.15 0.28 0.35 NA 0.33 542902 hsa-miR-185 -0.06 0.02 -0.17 0.13 NA 0.12 510991 hsa-miR-196b 0.58 1.06 0.90 0.86 NA 0.87 542475 hsa-miR-221* -0.13 0.00 0.17 0.22 NA 0.18 517918 hsa-miR-222* 0.31 -0.79 0.31 0.81 NA 0.16 511038 hsa-miR-299-5p 0.75 0.36 0.71 0.83 NA 0.80 511039 hsa-miR-29a -0.03 -0.57 0.00 NA 0.32 -0.17 517810 hsa-miR-29b-1* 0.22 -0.30 0.04 0.39 NA 0.48 511053 hsa-miR-32 0.42 0.14 0.40 1.30 NA 0.95 542887 hsa-miR-331-3p 0.09 0.62 0.51 0.53 NA 0.47 532884 hsa-miR-342-3p -1.32 -0.62 -0.98 -0.77 NA -0.76 542476 hsa-miR-374b* 0.63 0.74 0.87 0.56 NA 0.64 542548 hsa-miR-412 0.69 0.42 0.43 0.64 NA 0.65 528950 hsa-miR-455-3p 0.48 0.52 0.50 0.79 NA 0.46 513179 hsa-miR-455-5p 1.01 0.50 0.69 0.65 NA 0.76 511142 hsa-miR-510 -0.39 -0.42 -0.55 NA -0.39 -0.55 511164 hsa-miR-519e 0.58 0.59 -0.23 0.27 NA 0.23 517566 hsa-miR-629* 0.01 0.27 -0.14 0.28 0.05 NA 542807 hsa-miR-663 NA -0.98 -1.14 -1.05 -1.05 -1.00 529190 hsa-miR-708 -0.32 -0.18 -0.48 -0.11 NA -0.39 529871 hsa-miR-768-5p -0.16 0.42 -0.07 -0.32 NA -0.05 5

Page 37: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42808 hsa-miR-874 -0.27 -0.13 -0.41 -0.29 NA -0.13 517830 hsa-miR-885-5p NA -0.61 -0.15 -0.79 -0.37 -0.45 527961 hsa-miR-891a -0.47 -0.27 -0.19 -0.31 NA -0.47 517858 miRPlus_17858 0.74 0.76 0.84 0.74 NA 0.71 542530 miRPlus_42530 0.46 -0.03 -0.01 0.26 NA 0.27 517876 hsa-miR-125b-1* -0.07 0.13 0.14 NA NA -0.07 442583 hsa-miR-129-3p NA -1.36 -1.36 -0.57 NA -1.07 410943 hsa-miR-136 NA 0.45 0.87 0.77 NA 0.75 417842 hsa-miR-141* NA 0.85 1.30 0.92 NA 0.92 410962 hsa-miR-154 NA -0.40 -0.55 -0.50 NA -0.34 442874 hsa-miR-16-2* 0.41 0.34 NA 0.79 NA 0.50 45730 hsa-miR-208a 0.12 0.06 0.35 0.28 NA NA 4

11015 hsa-miR-215 -0.76 -0.27 NA -0.41 -0.67 NA 411024 hsa-miR-223 -0.35 -0.27 -0.10 NA NA -0.34 442473 hsa-miR-224 NA 0.76 0.98 0.64 NA 0.75 411037 hsa-miR-299-3p 0.58 -0.01 NA 0.25 -0.33 NA 411065 hsa-miR-335 -0.65 -1.18 -0.79 NA NA -0.52 442716 hsa-miR-33a NA -0.46 -0.78 0.20 NA 0.07 411089 hsa-miR-376a NA 0.47 0.71 1.44 NA 0.85 442600 hsa-miR-500* -0.47 -0.69 -0.43 NA NA -0.34 417546 hsa-miR-585 -0.48 NA -0.35 -0.24 -0.45 NA 417354 hsa-miR-637 NA -0.72 -1.03 -0.65 -0.71 NA 417718 hsa-miR-92b NA 0.55 0.63 0.31 NA 0.15 442810 hsa-miR-149 NA -0.37 NA -0.39 NA -0.47 342629 hsa-miR-376c NA NA 0.51 1.04 NA 0.60 311091 hsa-miR-377 NA NA 0.80 0.79 NA 0.51 311097 hsa-miR-382 NA -0.35 -0.46 -0.32 NA NA 342448 hsa-miR-409-5p -0.63 -0.13 NA -0.53 NA NA 318847 hsa-miR-450a NA NA 0.82 0.63 NA 0.66 342694 hsa-miR-485-3p NA -0.03 -0.12 -0.12 NA NA 342661 hsa-miR-492 NA NA -1.13 -0.65 -0.81 NA 342972 hsa-miR-509-5p NA -0.51 -1.23 -0.57 NA NA 311151 hsa-miR-516b -0.51 -0.11 NA -0.34 NA NA 331809 hsa-miR-590-5p NA 0.45 NA 1.06 NA 0.91 3

Page 38: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

10306 hsa-miR-146b-5p NA -0.66 -1.08 NA NA NA 210990 hsa-miR-196a NA 0.60 NA NA NA 0.64 242797 hsa-miR-210 NA 0.51 NA 0.33 NA NA 211090 hsa-miR-376b NA NA NA 0.56 NA 0.54 229379 hsa-miR-452 NA 0.19 NA 0.61 NA NA 242623 hsa-miR-483-3p NA NA 0.74 NA 0.58 NA 242921 hsa-miR-502-3p NA -0.76 -1.04 NA NA NA 214272 hsa-miR-542-3p NA 0.56 NA 0.47 NA NA 242750 hsa-miR-636 NA 0.68 NA 0.59 NA NA 242728 hsa-miR-92a NA 0.32 NA 0.33 NA NA 217898 hsa-miR-99b* NA 0.46 NA 0.52 NA NA 233902 hsa-miR-128 NA NA NA 0.07 NA NA 142802 hsa-miR-150 NA NA NA -0.54 NA NA 142775 hsa-miR-187* NA -0.62 NA NA NA NA 111018 hsa-miR-218 NA 0.12 NA NA NA NA 142566 hsa-miR-224 NA NA NA 0.93 NA NA 114300 hsa-miR-29c* NA 0.66 NA NA NA NA 142673 hsa-miR-337-3p NA 0.09 NA NA NA NA 111104 hsa-miR-422a NA 0.15 NA NA NA NA 142654 hsa-miR-483-5p NA 0.24 NA NA NA NA 142698 hsa-miR-484 NA 0.47 NA NA NA NA 113183 hsa-miR-487a NA NA -0.47 NA NA NA 142703 hsa-miR-490-3p NA -0.18 NA NA NA NA 111138 hsa-miR-506 NA NA NA 0.69 NA NA 111150 hsa-miR-516a-3p/hsa-miR-516b*NA NA NA 0.69 NA NA 111176 hsa-miR-526b NA 0.22 NA NA NA NA 117272 hsa-miR-551a NA -0.04 NA NA NA NA 117552 hsa-miR-617 NA 0.07 NA NA NA NA 142593 hsa-miR-623 NA 0.35 NA NA NA NA 117327 hsa-miR-630 NA 0.10 NA NA NA NA 142827 hsa-miR-652 NA NA -0.79 NA NA NA 142726 hsa-miR-671-5p NA 0.21 NA NA NA NA 130033 hsa-miR-877 NA NA 0.37 NA NA NA 142653 hsa-let-7c* NA NA NA NA NA NA 0

Page 39: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42505 hsa-let-7d* NA NA NA NA NA NA 042743 hsa-let-7e* NA NA NA NA NA NA 042768 hsa-let-7f-1* NA NA NA NA NA NA 042510 hsa-let-7f-2* NA NA NA NA NA NA 019602 hsa-let-7g NA NA NA NA NA NA 042778 hsa-let-7g* NA NA NA NA NA NA 042534 hsa-let-7i* NA NA NA NA NA NA 042563 hsa-miR-100* NA NA NA NA NA NA 017935 hsa-miR-101* NA NA NA NA NA NA 042562 hsa-miR-105* NA NA NA NA NA NA 042508 hsa-miR-106a* NA NA NA NA NA NA 028019 hsa-miR-10a* NA NA NA NA NA NA 042969 hsa-miR-10b* NA NA NA NA NA NA 042848 hsa-miR-1180 NA NA NA NA NA NA 019583 hsa-miR-122 NA NA NA NA NA NA 042551 hsa-miR-122* NA NA NA NA NA NA 014328 hsa-miR-124 NA NA NA NA NA NA 042898 hsa-miR-124* NA NA NA NA NA NA 042845 hsa-miR-125b-2* NA NA NA NA NA NA 033596 hsa-miR-126* NA NA NA NA NA NA 042829 hsa-miR-127-3p NA NA NA NA NA NA 042692 hsa-miR-127-5p NA NA NA NA NA NA 042710 hsa-miR-1296 NA NA NA NA NA NA 042681 hsa-miR-1307 NA NA NA NA NA NA 042718 hsa-miR-130a* NA NA NA NA NA NA 042787 hsa-miR-130b* NA NA NA NA NA NA 010937 hsa-miR-132 NA NA NA NA NA NA 017808 hsa-miR-132* NA NA NA NA NA NA 032809 hsa-miR-133a NA NA NA NA NA NA 030755 hsa-miR-133b NA NA NA NA NA NA 042942 hsa-miR-134 NA NA NA NA NA NA 042839 hsa-miR-135a NA NA NA NA NA NA 042609 hsa-miR-135a* NA NA NA NA NA NA 010942 hsa-miR-135b NA NA NA NA NA NA 0

Page 40: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42615 hsa-miR-135b* NA NA NA NA NA NA 042512 hsa-miR-136* NA NA NA NA NA NA 042686 hsa-miR-136* NA NA NA NA NA NA 010944 hsa-miR-137 NA NA NA NA NA NA 042454 hsa-miR-138-2* NA NA NA NA NA NA 042451 hsa-miR-139-3p NA NA NA NA NA NA 042689 hsa-miR-139-5p NA NA NA NA NA NA 027542 hsa-miR-139-5p NA NA NA NA NA NA 010946 hsa-miR-141 NA NA NA NA NA NA 010947 hsa-miR-142-3p NA NA NA NA NA NA 019015 hsa-miR-142-5p NA NA NA NA NA NA 042515 hsa-miR-143* NA NA NA NA NA NA 029802 hsa-miR-144 NA NA NA NA NA NA 042660 hsa-miR-144* NA NA NA NA NA NA 031867 hsa-miR-145* NA NA NA NA NA NA 010952 hsa-miR-146a NA NA NA NA NA NA 042657 hsa-miR-146a* NA NA NA NA NA NA 042461 hsa-miR-146b-3p NA NA NA NA NA NA 010954 hsa-miR-147 NA NA NA NA NA NA 017411 hsa-miR-147b NA NA NA NA NA NA 010955 hsa-miR-148a NA NA NA NA NA NA 017872 hsa-miR-148a* NA NA NA NA NA NA 042736 hsa-miR-148b* NA NA NA NA NA NA 042850 hsa-miR-150* NA NA NA NA NA NA 042599 hsa-miR-153 NA NA NA NA NA NA 042572 hsa-miR-154* NA NA NA NA NA NA 042949 hsa-miR-155* NA NA NA NA NA NA 042789 hsa-miR-15a* NA NA NA NA NA NA 017902 hsa-miR-15b* NA NA NA NA NA NA 017936 hsa-miR-16-1* NA NA NA NA NA NA 017928 hsa-miR-181a-2* NA NA NA NA NA NA 042496 hsa-miR-181c NA NA NA NA NA NA 042634 hsa-miR-181c* NA NA NA NA NA NA 042840 hsa-miR-181d NA NA NA NA NA NA 0

Page 41: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

10976 hsa-miR-182* NA NA NA NA NA NA 042614 hsa-miR-186* NA NA NA NA NA NA 027539 hsa-miR-187 NA NA NA NA NA NA 042786 hsa-miR-188-3p NA NA NA NA NA NA 042620 hsa-miR-188-5p NA NA NA NA NA NA 013178 hsa-miR-18a* NA NA NA NA NA NA 028536 hsa-miR-18b* NA NA NA NA NA NA 027536 hsa-miR-190 NA NA NA NA NA NA 032731 hsa-miR-190b NA NA NA NA NA NA 042705 hsa-miR-191* NA NA NA NA NA NA 017732 hsa-miR-192 NA NA NA NA NA NA 017946 hsa-miR-192* NA NA NA NA NA NA 010988 hsa-miR-194 NA NA NA NA NA NA 042570 hsa-miR-194* NA NA NA NA NA NA 042723 hsa-miR-195* NA NA NA NA NA NA 019591 hsa-miR-199b-5p NA NA NA NA NA NA 042549 hsa-miR-19a* NA NA NA NA NA NA 017883 hsa-miR-19b-1* NA NA NA NA NA NA 042918 hsa-miR-19b-2* NA NA NA NA NA NA 011000 hsa-miR-200a NA NA NA NA NA NA 013127 hsa-miR-200a* NA NA NA NA NA NA 018900 hsa-miR-200b NA NA NA NA NA NA 017427 hsa-miR-200c NA NA NA NA NA NA 017851 hsa-miR-200c* NA NA NA NA NA NA 042507 hsa-miR-202* NA NA NA NA NA NA 042590 hsa-miR-202* NA NA NA NA NA NA 011004 hsa-miR-203 NA NA NA NA NA NA 011005 hsa-miR-204 NA NA NA NA NA NA 042655 hsa-miR-205 NA NA NA NA NA NA 011007 hsa-miR-206 NA NA NA NA NA NA 042555 hsa-miR-208b NA NA NA NA NA NA 042663 hsa-miR-20a* NA NA NA NA NA NA 011011 hsa-miR-211 NA NA NA NA NA NA 042627 hsa-miR-212 NA NA NA NA NA NA 0

Page 42: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42560 hsa-miR-214* NA NA NA NA NA NA 042553 hsa-miR-216a NA NA NA NA NA NA 017849 hsa-miR-216b NA NA NA NA NA NA 019016 hsa-miR-217 NA NA NA NA NA NA 042941 hsa-miR-218-1* NA NA NA NA NA NA 042815 hsa-miR-218-2* NA NA NA NA NA NA 021702 hsa-miR-219-1-3p NA NA NA NA NA NA 042834 hsa-miR-219-2-3p NA NA NA NA NA NA 042509 hsa-miR-219-5p NA NA NA NA NA NA 011021 hsa-miR-220a NA NA NA NA NA NA 042662 hsa-miR-220c NA NA NA NA NA NA 042460 hsa-miR-223* NA NA NA NA NA NA 042638 hsa-miR-23a* NA NA NA NA NA NA 042602 hsa-miR-23b* NA NA NA NA NA NA 042628 hsa-miR-26a-1* NA NA NA NA NA NA 042666 hsa-miR-26a-2* NA NA NA NA NA NA 042523 hsa-miR-26b* NA NA NA NA NA NA 017818 hsa-miR-27a* NA NA NA NA NA NA 042823 hsa-miR-27b* NA NA NA NA NA NA 017940 hsa-miR-28-3p NA NA NA NA NA NA 042528 hsa-miR-296-3p NA NA NA NA NA NA 042713 hsa-miR-296-5p NA NA NA NA NA NA 06880 hsa-miR-297 NA NA NA NA NA NA 0

42792 hsa-miR-29b-2* NA NA NA NA NA NA 017886 hsa-miR-301b NA NA NA NA NA NA 011222 hsa-miR-302a NA NA NA NA NA NA 042541 hsa-miR-302a* NA NA NA NA NA NA 011043 hsa-miR-302b NA NA NA NA NA NA 042667 hsa-miR-302b* NA NA NA NA NA NA 011044 hsa-miR-302c NA NA NA NA NA NA 027838 hsa-miR-302d NA NA NA NA NA NA 019595 hsa-miR-30a* NA NA NA NA NA NA 042702 hsa-miR-30c-1* NA NA NA NA NA NA 017853 hsa-miR-30d* NA NA NA NA NA NA 0

Page 43: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42957 hsa-miR-323-3p NA NA NA NA NA NA 042457 hsa-miR-323-5p NA NA NA NA NA NA 042719 hsa-miR-324-3p NA NA NA NA NA NA 042477 hsa-miR-324-5p NA NA NA NA NA NA 011058 hsa-miR-325 NA NA NA NA NA NA 042693 hsa-miR-326 NA NA NA NA NA NA 042675 hsa-miR-328 NA NA NA NA NA NA 011061 hsa-miR-329 NA NA NA NA NA NA 011063 hsa-miR-330-3p NA NA NA NA NA NA 042875 hsa-miR-330-5p NA NA NA NA NA NA 017866 hsa-miR-331-5p NA NA NA NA NA NA 017929 hsa-miR-335* NA NA NA NA NA NA 017944 hsa-miR-337-5p NA NA NA NA NA NA 042592 hsa-miR-338-3p NA NA NA NA NA NA 017825 hsa-miR-338-5p NA NA NA NA NA NA 042912 hsa-miR-339-3p NA NA NA NA NA NA 042924 hsa-miR-33a* NA NA NA NA NA NA 042715 hsa-miR-33b NA NA NA NA NA NA 042928 hsa-miR-33b* NA NA NA NA NA NA 042738 hsa-miR-340* NA NA NA NA NA NA 042576 hsa-miR-342-5p NA NA NA NA NA NA 042934 hsa-miR-345 NA NA NA NA NA NA 042759 hsa-miR-346 NA NA NA NA NA NA 017922 hsa-miR-34a* NA NA NA NA NA NA 011073 hsa-miR-34b* NA NA NA NA NA NA 042729 hsa-miR-34c-3p NA NA NA NA NA NA 042577 hsa-miR-361-3p NA NA NA NA NA NA 017893 hsa-miR-362-3p NA NA NA NA NA NA 042503 hsa-miR-362-5p NA NA NA NA NA NA 011077 hsa-miR-363 NA NA NA NA NA NA 014280 hsa-miR-367 NA NA NA NA NA NA 042517 hsa-miR-367* NA NA NA NA NA NA 029529 hsa-miR-369-3p NA NA NA NA NA NA 013145 hsa-miR-369-5p NA NA NA NA NA NA 0

Page 44: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42967 hsa-miR-370 NA NA NA NA NA NA 011083 hsa-miR-371-3p NA NA NA NA NA NA 011084 hsa-miR-372 NA NA NA NA NA NA 011085 hsa-miR-373 NA NA NA NA NA NA 027545 hsa-miR-373* NA NA NA NA NA NA 029577 hsa-miR-374a* NA NA NA NA NA NA 042498 hsa-miR-375 NA NA NA NA NA NA 042885 hsa-miR-376a* NA NA NA NA NA NA 042899 hsa-miR-377* NA NA NA NA NA NA 011092 hsa-miR-378* NA NA NA NA NA NA 011093 hsa-miR-379 NA NA NA NA NA NA 042889 hsa-miR-379* NA NA NA NA NA NA 042552 hsa-miR-379* NA NA NA NA NA NA 027546 hsa-miR-380 NA NA NA NA NA NA 028161 hsa-miR-380* NA NA NA NA NA NA 011098 hsa-miR-383 NA NA NA NA NA NA 042580 hsa-miR-384 NA NA NA NA NA NA 011240 hsa-miR-409-3p NA NA NA NA NA NA 042925 hsa-miR-409-5p NA NA NA NA NA NA 011102 hsa-miR-410 NA NA NA NA NA NA 017482 hsa-miR-411 NA NA NA NA NA NA 042784 hsa-miR-411* NA NA NA NA NA NA 042764 hsa-miR-412 NA NA NA NA NA NA 017474 hsa-miR-421 NA NA NA NA NA NA 042603 hsa-miR-424* NA NA NA NA NA NA 011108 hsa-miR-425* NA NA NA NA NA NA 013171 hsa-miR-429 NA NA NA NA NA NA 042612 hsa-miR-431 NA NA NA NA NA NA 042674 hsa-miR-431* NA NA NA NA NA NA 011111 hsa-miR-432 NA NA NA NA NA NA 042584 hsa-miR-432* NA NA NA NA NA NA 042853 hsa-miR-433 NA NA NA NA NA NA 011113 hsa-miR-448 NA NA NA NA NA NA 011114 hsa-miR-449a NA NA NA NA NA NA 0

Page 45: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

33668 hsa-miR-449b NA NA NA NA NA NA 042892 hsa-miR-450b-3p NA NA NA NA NA NA 042896 hsa-miR-450b-5p NA NA NA NA NA NA 042866 hsa-miR-451 NA NA NA NA NA NA 042598 hsa-miR-452* NA NA NA NA NA NA 042672 hsa-miR-453 NA NA NA NA NA NA 042854 hsa-miR-454 NA NA NA NA NA NA 028520 hsa-miR-454* NA NA NA NA NA NA 042480 hsa-miR-485-5p NA NA NA NA NA NA 042946 hsa-miR-486-3p NA NA NA NA NA NA 032946 hsa-miR-486-5p NA NA NA NA NA NA 042704 hsa-miR-488 NA NA NA NA NA NA 011120 hsa-miR-488* NA NA NA NA NA NA 042794 hsa-miR-489 NA NA NA NA NA NA 017822 hsa-miR-490-5p NA NA NA NA NA NA 011123 hsa-miR-491-5p NA NA NA NA NA NA 028257 hsa-miR-493 NA NA NA NA NA NA 042936 hsa-miR-493 NA NA NA NA NA NA 011125 hsa-miR-493* NA NA NA NA NA NA 042676 hsa-miR-495 NA NA NA NA NA NA 011128 hsa-miR-496 NA NA NA NA NA NA 042847 hsa-miR-497 NA NA NA NA NA NA 042558 hsa-miR-497* NA NA NA NA NA NA 017831 hsa-miR-499-3p NA NA NA NA NA NA 014313 hsa-miR-499-5p NA NA NA NA NA NA 017875 hsa-miR-500 NA NA NA NA NA NA 042578 hsa-miR-501-3p NA NA NA NA NA NA 042910 hsa-miR-501-5p NA NA NA NA NA NA 011134 hsa-miR-502-5p NA NA NA NA NA NA 028480 hsa-miR-504 NA NA NA NA NA NA 033915 hsa-miR-505 NA NA NA NA NA NA 042669 hsa-miR-505 NA NA NA NA NA NA 042490 hsa-miR-505* NA NA NA NA NA NA 011139 hsa-miR-507 NA NA NA NA NA NA 0

Page 46: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

11140 hsa-miR-508-3p NA NA NA NA NA NA 042812 hsa-miR-508-5p NA NA NA NA NA NA 011141 hsa-miR-509-3p NA NA NA NA NA NA 027229 hsa-miR-511 NA NA NA NA NA NA 011144 hsa-miR-512-3p NA NA NA NA NA NA 042930 hsa-miR-512-5p NA NA NA NA NA NA 042960 hsa-miR-513a-3p NA NA NA NA NA NA 042959 hsa-miR-514 NA NA NA NA NA NA 011148 hsa-miR-515-3p NA NA NA NA NA NA 011149 hsa-miR-515-5p NA NA NA NA NA NA 013130 hsa-miR-517* NA NA NA NA NA NA 042484 hsa-miR-517a NA NA NA NA NA NA 042450 hsa-miR-517b NA NA NA NA NA NA 011154 hsa-miR-517c NA NA NA NA NA NA 042520 hsa-miR-518a-3p NA NA NA NA NA NA 042643 hsa-miR-518b NA NA NA NA NA NA 042559 hsa-miR-518c NA NA NA NA NA NA 011158 hsa-miR-518d-3p NA NA NA NA NA NA 011159 hsa-miR-518e NA NA NA NA NA NA 042857 hsa-miR-518f NA NA NA NA NA NA 042688 hsa-miR-518f* NA NA NA NA NA NA 042561 hsa-miR-519a NA NA NA NA NA NA 011162 hsa-miR-519b-3p NA NA NA NA NA NA 010482 hsa-miR-519c-3p NA NA NA NA NA NA 011165 hsa-miR-520a-3p NA NA NA NA NA NA 013133 hsa-miR-520a-5p NA NA NA NA NA NA 011166 hsa-miR-520b/hsa-miR-520c-3pNA NA NA NA NA NA 011168 hsa-miR-520d-3p NA NA NA NA NA NA 011169 hsa-miR-520e NA NA NA NA NA NA 042455 hsa-miR-520f NA NA NA NA NA NA 042597 hsa-miR-520g NA NA NA NA NA NA 013146 hsa-miR-520g/hsa-miR-520hNA NA NA NA NA NA 011171 hsa-miR-521 NA NA NA NA NA NA 042483 hsa-miR-522 NA NA NA NA NA NA 0

Page 47: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42890 hsa-miR-523 NA NA NA NA NA NA 031349 hsa-miR-524-3p NA NA NA NA NA NA 010618 hsa-miR-524-5p NA NA NA NA NA NA 042909 hsa-miR-525-3p NA NA NA NA NA NA 042833 hsa-miR-526a/hsa-miR-520c-5p/hsa-miR-518d-5pNA NA NA NA NA NA 042737 hsa-miR-526b* NA NA NA NA NA NA 042732 hsa-miR-532-3p NA NA NA NA NA NA 017624 hsa-miR-532-5p NA NA NA NA NA NA 014271 hsa-miR-539 NA NA NA NA NA NA 042635 hsa-miR-541 NA NA NA NA NA NA 042617 hsa-miR-541* NA NA NA NA NA NA 017823 hsa-miR-541* NA NA NA NA NA NA 042811 hsa-miR-542-5p NA NA NA NA NA NA 042470 hsa-miR-543 NA NA NA NA NA NA 033043 hsa-miR-544 NA NA NA NA NA NA 033728 hsa-miR-545 NA NA NA NA NA NA 042956 hsa-miR-545* NA NA NA NA NA NA 017535 hsa-miR-548a-3p NA NA NA NA NA NA 030493 hsa-miR-548a-5p NA NA NA NA NA NA 033430 hsa-miR-548b-3p NA NA NA NA NA NA 042791 hsa-miR-548b-5p NA NA NA NA NA NA 033718 hsa-miR-548c-3p NA NA NA NA NA NA 042777 hsa-miR-548c-5p NA NA NA NA NA NA 027549 hsa-miR-548d-3p NA NA NA NA NA NA 042756 hsa-miR-548d-5p NA NA NA NA NA NA 017660 hsa-miR-550* NA NA NA NA NA NA 042781 hsa-miR-551b* NA NA NA NA NA NA 029460 hsa-miR-553 NA NA NA NA NA NA 042766 hsa-miR-554 NA NA NA NA NA NA 017612 hsa-miR-555 NA NA NA NA NA NA 042447 hsa-miR-556-3p NA NA NA NA NA NA 042955 hsa-miR-556-5p NA NA NA NA NA NA 042760 hsa-miR-557 NA NA NA NA NA NA 017652 hsa-miR-558 NA NA NA NA NA NA 0

Page 48: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

31076 hsa-miR-559 NA NA NA NA NA NA 031517 hsa-miR-561 NA NA NA NA NA NA 017536 hsa-miR-562 NA NA NA NA NA NA 017569 hsa-miR-563 NA NA NA NA NA NA 042944 hsa-miR-564 NA NA NA NA NA NA 042772 hsa-miR-566 NA NA NA NA NA NA 017634 hsa-miR-567 NA NA NA NA NA NA 042995 hsa-miR-568 NA NA NA NA NA NA 014854 hsa-miR-569 NA NA NA NA NA NA 017814 hsa-miR-570 NA NA NA NA NA NA 017490 hsa-miR-571 NA NA NA NA NA NA 042596 hsa-miR-572 NA NA NA NA NA NA 017641 hsa-miR-573 NA NA NA NA NA NA 017626 hsa-miR-575 NA NA NA NA NA NA 042446 hsa-miR-576-5p NA NA NA NA NA NA 042837 hsa-miR-577 NA NA NA NA NA NA 017302 hsa-miR-578 NA NA NA NA NA NA 042622 hsa-miR-579 NA NA NA NA NA NA 017459 hsa-miR-580 NA NA NA NA NA NA 014962 hsa-miR-581 NA NA NA NA NA NA 029328 hsa-miR-582-3p NA NA NA NA NA NA 042800 hsa-miR-582-5p NA NA NA NA NA NA 042544 hsa-miR-582-5p NA NA NA NA NA NA 042754 hsa-miR-586 NA NA NA NA NA NA 017594 hsa-miR-587 NA NA NA NA NA NA 017630 hsa-miR-588 NA NA NA NA NA NA 017570 hsa-miR-589* NA NA NA NA NA NA 042567 hsa-miR-590-3p NA NA NA NA NA NA 042482 hsa-miR-591 NA NA NA NA NA NA 017312 hsa-miR-592 NA NA NA NA NA NA 042504 hsa-miR-593 NA NA NA NA NA NA 042478 hsa-miR-593* NA NA NA NA NA NA 017349 hsa-miR-595 NA NA NA NA NA NA 042695 hsa-miR-596 NA NA NA NA NA NA 0

Page 49: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17637 hsa-miR-598 NA NA NA NA NA NA 030592 hsa-miR-599 NA NA NA NA NA NA 017498 hsa-miR-601 NA NA NA NA NA NA 017393 hsa-miR-603 NA NA NA NA NA NA 017592 hsa-miR-604 NA NA NA NA NA NA 042506 hsa-miR-605 NA NA NA NA NA NA 029883 hsa-miR-606 NA NA NA NA NA NA 032190 hsa-miR-607 NA NA NA NA NA NA 042543 hsa-miR-608 NA NA NA NA NA NA 017353 hsa-miR-609 NA NA NA NA NA NA 017445 hsa-miR-610 NA NA NA NA NA NA 042901 hsa-miR-611 NA NA NA NA NA NA 027551 hsa-miR-612 NA NA NA NA NA NA 017577 hsa-miR-613 NA NA NA NA NA NA 042935 hsa-miR-614 NA NA NA NA NA NA 042690 hsa-miR-615-5p NA NA NA NA NA NA 042870 hsa-miR-616 NA NA NA NA NA NA 017289 hsa-miR-616* NA NA NA NA NA NA 017336 hsa-miR-618 NA NA NA NA NA NA 042757 hsa-miR-619 NA NA NA NA NA NA 042468 hsa-miR-621 NA NA NA NA NA NA 017493 hsa-miR-622 NA NA NA NA NA NA 032095 hsa-miR-624 NA NA NA NA NA NA 042557 hsa-miR-624* NA NA NA NA NA NA 033407 hsa-miR-626 NA NA NA NA NA NA 017625 hsa-miR-627 NA NA NA NA NA NA 017870 hsa-miR-628-5p NA NA NA NA NA NA 017961 hsa-miR-629 NA NA NA NA NA NA 042700 hsa-miR-631 NA NA NA NA NA NA 017444 hsa-miR-632 NA NA NA NA NA NA 032711 hsa-miR-633 NA NA NA NA NA NA 017391 hsa-miR-635 NA NA NA NA NA NA 042740 hsa-miR-639 NA NA NA NA NA NA 042758 hsa-miR-640 NA NA NA NA NA NA 0

Page 50: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17530 hsa-miR-641 NA NA NA NA NA NA 017325 hsa-miR-643 NA NA NA NA NA NA 017563 hsa-miR-644 NA NA NA NA NA NA 017613 hsa-miR-645 NA NA NA NA NA NA 042952 hsa-miR-646 NA NA NA NA NA NA 042746 hsa-miR-647 NA NA NA NA NA NA 042547 hsa-miR-648 NA NA NA NA NA NA 015619 hsa-miR-649 NA NA NA NA NA NA 017593 hsa-miR-650 NA NA NA NA NA NA 017394 hsa-miR-651 NA NA NA NA NA NA 042607 hsa-miR-653 NA NA NA NA NA NA 021498 hsa-miR-654-3p NA NA NA NA NA NA 042843 hsa-miR-654-5p NA NA NA NA NA NA 042465 hsa-miR-655 NA NA NA NA NA NA 029736 hsa-miR-656 NA NA NA NA NA NA 017460 hsa-miR-657 NA NA NA NA NA NA 017338 hsa-miR-660 NA NA NA NA NA NA 042535 hsa-miR-661 NA NA NA NA NA NA 017507 hsa-miR-662 NA NA NA NA NA NA 042525 hsa-miR-671-3p NA NA NA NA NA NA 017347 hsa-miR-708* NA NA NA NA NA NA 011277 hsa-miR-7-1* NA NA NA NA NA NA 042964 hsa-miR-7-2* NA NA NA NA NA NA 042970 hsa-miR-744* NA NA NA NA NA NA 028703 hsa-miR-758 NA NA NA NA NA NA 028759 hsa-miR-758 NA NA NA NA NA NA 042852 hsa-miR-760 NA NA NA NA NA NA 028396 hsa-miR-767-3p NA NA NA NA NA NA 028009 hsa-miR-767-5p NA NA NA NA NA NA 042828 hsa-miR-769-3p NA NA NA NA NA NA 032891 hsa-miR-769-5p NA NA NA NA NA NA 028251 hsa-miR-770-5p NA NA NA NA NA NA 030442 hsa-miR-802 NA NA NA NA NA NA 031436 hsa-miR-873 NA NA NA NA NA NA 0

Page 51: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17817 hsa-miR-875-3p NA NA NA NA NA NA 017850 hsa-miR-875-5p NA NA NA NA NA NA 028884 hsa-miR-876-3p NA NA NA NA NA NA 042940 hsa-miR-876-5p NA NA NA NA NA NA 042771 hsa-miR-877* NA NA NA NA NA NA 042633 hsa-miR-885-3p NA NA NA NA NA NA 028889 hsa-miR-888 NA NA NA NA NA NA 042556 hsa-miR-889 NA NA NA NA NA NA 028047 hsa-miR-890 NA NA NA NA NA NA 021501 hsa-miR-891b NA NA NA NA NA NA 042858 hsa-miR-892a NA NA NA NA NA NA 042493 hsa-miR-892b NA NA NA NA NA NA 042932 hsa-miR-920 NA NA NA NA NA NA 042683 hsa-miR-922 NA NA NA NA NA NA 042788 hsa-miR-924 NA NA NA NA NA NA 042926 hsa-miR-92a-1* NA NA NA NA NA NA 042801 hsa-miR-92a-2* NA NA NA NA NA NA 042717 hsa-miR-92b* NA NA NA NA NA NA 042747 hsa-miR-93* NA NA NA NA NA NA 042527 hsa-miR-935 NA NA NA NA NA NA 042514 hsa-miR-937 NA NA NA NA NA NA 042776 hsa-miR-938 NA NA NA NA NA NA 042997 hsa-miR-940 NA NA NA NA NA NA 042753 hsa-miR-940 NA NA NA NA NA NA 042814 hsa-miR-941 NA NA NA NA NA NA 042608 hsa-miR-942 NA NA NA NA NA NA 042873 hsa-miR-944 NA NA NA NA NA NA 011181 hsa-miR-95 NA NA NA NA NA NA 042971 hsa-miR-96* NA NA NA NA NA NA 017852 hsa-miR-99a* NA NA NA NA NA NA 011239 miRPlus_11239 NA NA NA NA NA NA 017653 miRPlus_17653 NA NA NA NA NA NA 017820 miRPlus_17820 NA NA NA NA NA NA 017824 miRPlus_17824 NA NA NA NA NA NA 0

Page 52: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17841 miRPlus_17841 NA NA NA NA NA NA 017880 miRPlus_17880 NA NA NA NA NA NA 017891 miRPlus_17891 NA NA NA NA NA NA 017892 miRPlus_17892 NA NA NA NA NA NA 017932 miRPlus_17932 NA NA NA NA NA NA 017957 miRPlus_17957 NA NA NA NA NA NA 028534 miRPlus_28534 NA NA NA NA NA NA 030209 miRPlus_30209 NA NA NA NA NA NA 042492 miRPlus_42492 NA NA NA NA NA NA 042720 miRPlus_42720 NA NA NA NA NA NA 042721 miRPlus_42721 NA NA NA NA NA NA 042734 miRPlus_42734 NA NA NA NA NA NA 042780 miRPlus_42780 NA NA NA NA NA NA 042819 miRPlus_42819 NA NA NA NA NA NA 042838 miRPlus_42838 NA NA NA NA NA NA 042859 miRPlus_42859 NA NA NA NA NA NA 014258 hsa_negative_control_1 NA NA NA NA NA NA14259 hsa_negative_control_2 NA NA NA NA NA NA14260 hsa_negative_control_3 NA NA NA NA NA NA14266 hsa_negative_control_4 NA NA NA NA NA NA10898 hsa_negative_control_5 0.15 -0.33 -0.69 0.15 -0.26 -0.6610901 hsa_negative_control_6 NA NA NA NA NA NA10902 hsa_negative_control_7 NA NA NA NA NA NA10903 hsa_negative_control_8 NA NA NA NA NA NA19011 hsa_SNORD10 0.36 1.94 0.76 1.06 0.78 0.5719005 hsa_SNORD118 0.89 1.65 0.50 0.79 1.06 0.9819606 hsa_SNORD12 0.61 0.76 0.62 0.42 0.51 0.5919603 hsa_SNORD13 0.83 1.57 1.01 0.52 0.65 1.0519013 hsa_SNORD14B 0.68 0.81 0.76 0.76 0.57 0.5719607 hsa_SNORD15A NA NA NA NA NA NA19008 hsa_SNORD2 0.81 0.77 0.38 0.50 0.57 0.3119007 hsa_SNORD3@ 1.41 1.46 1.39 0.65 0.89 0.9719604 hsa_SNORD4A 1.26 1.38 0.89 1.01 1.14 0.7519605 hsa_SNORD6 1.09 1.77 1.09 1.42 0.85 0.78

Page 53: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

11278 U6-snRNA-1 -0.23 -0.40 -0.39 -0.48 -0.37 -0.5711279 U6-snRNA-2 0.67 0.12 0.12 0.48 0.27 0.2117415 ebv-miR-BART10 NA NA NA NA NA NA42485 ebv-miR-BART10* NA NA NA NA NA NA42545 ebv-miR-BART11-3p NA NA NA NA NA NA17283 ebv-miR-BART11-5p NA NA NA NA NA NA17306 ebv-miR-BART12 NA NA NA NA NA NA27537 ebv-miR-BART13 -0.54 -0.28 -0.31 -0.06 -0.30 -0.1842882 ebv-miR-BART13* NA NA NA NA NA NA17519 ebv-miR-BART1-3p NA NA NA NA NA NA17623 ebv-miR-BART14 NA NA NA NA NA NA17655 ebv-miR-BART14* NA NA NA NA NA NA42897 ebv-miR-BART15 NA NA NA NA NA NA17541 ebv-miR-BART1-5p NA NA NA NA NA NA17358 ebv-miR-BART16 NA 0.14 NA NA NA NA42773 ebv-miR-BART17-3p 0.84 0.54 0.99 0.84 0.84 0.8742943 ebv-miR-BART17-5p -0.45 -1.06 -0.74 -0.99 -1.21 -0.8542466 ebv-miR-BART18-3p NA NA NA NA NA NA17657 ebv-miR-BART18-5p NA NA NA NA NA NA42522 ebv-miR-BART19-3p -0.12 0.06 0.25 -0.43 -0.22 -0.0942613 ebv-miR-BART19-5p NA NA NA NA NA NA17585 ebv-miR-BART20-3p NA NA NA NA NA NA17636 ebv-miR-BART20-5p NA NA NA NA NA NA42974 ebv-miR-BART2-3p -0.02 0.15 -0.13 -0.45 -0.63 -0.1617402 ebv-miR-BART2-5p NA NA NA NA NA NA17589 ebv-miR-BART3 NA NA NA NA NA NA17539 ebv-miR-BART3* NA NA NA NA NA NA17359 ebv-miR-BART4 NA NA NA NA NA NA17532 ebv-miR-BART5 NA NA NA NA NA NA17561 ebv-miR-BART6-3p -0.78 0.01 -1.04 -0.76 -0.89 -0.7542855 ebv-miR-BART6-5p NA NA NA NA NA NA42616 ebv-miR-BART7 NA NA NA NA NA NA42954 ebv-miR-BART7* NA NA NA NA NA NA17509 ebv-miR-BART8 NA NA NA NA NA NA

Page 54: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17328 ebv-miR-BART8* -1.49 -1.35 -1.52 -1.35 -0.99 -1.2217332 ebv-miR-BART9 NA NA NA NA NA NA42824 ebv-miR-BART9* NA NA NA NA NA NA42906 ebv-miR-BHRF1-1 -0.18 -0.44 -0.58 -0.51 -0.54 -0.5742951 ebv-miR-BHRF1-2 -0.13 0.12 0.31 0.44 0.26 0.0017562 ebv-miR-BHRF1-2* NA NA NA NA NA NA17646 ebv-miR-BHRF1-3 NA NA NA NA NA NA17508 hcmv-miR-UL112 NA NA NA NA NA NA42782 hcmv-miR-UL148D -0.66 -0.31 -0.25 -0.49 -0.16 -0.4317631 hcmv-miR-UL22A NA NA NA NA NA NA17299 hcmv-miR-UL22A* NA NA NA NA NA NA17439 hcmv-miR-UL36 NA NA NA NA NA NA42610 hcmv-miR-UL36* NA NA NA NA NA NA27541 hcmv-miR-UL70-3p NA NA NA NA NA NA42497 hcmv-miR-UL70-5p NA NA NA NA NA NA42905 hcmv-miR-US25-1 NA NA NA NA NA NA42458 hcmv-miR-US25-1* NA NA NA NA NA NA17529 hcmv-miR-US25-2-3p NA NA NA NA NA NA17619 hcmv-miR-US25-2-5p NA NA NA NA NA NA42755 hcmv-miR-US33-3p NA NA NA NA NA NA42501 hcmv-miR-US33-5p NA NA NA NA NA NA42642 hcmv-miR-US4 NA NA NA NA NA NA17499 hcmv-miR-US5-1 NA NA NA NA NA NA17520 hcmv-miR-US5-2 NA NA NA NA NA NA42533 hiv1-miR-H1 NA NA NA NA NA NA31038 hiv1-miR-N367 NA NA NA NA NA NA30716 hsv1-miR-H1 NA NA NA NA NA NA17567 kshv-miR-K12-1 NA NA NA NA NA NA42656 kshv-miR-K12-10a 1.03 0.84 1.32 0.49 1.08 0.9242624 kshv-miR-K12-10b 1.07 0.82 1.25 0.74 1.06 1.1117571 kshv-miR-K12-11 NA NA NA NA NA NA42516 kshv-miR-K12-12 NA NA NA NA NA NA17470 kshv-miR-K12-2 NA NA NA NA NA NA42795 kshv-miR-K12-3 -0.13 -0.38 -0.81 -0.47 -0.43 -0.36

Page 55: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17315 kshv-miR-K12-3* NA NA NA NA NA NA17418 kshv-miR-K12-4-3p NA NA NA NA NA NA17606 kshv-miR-K12-4-5p NA NA NA NA NA NA17578 kshv-miR-K12-5 NA NA NA NA NA NA17488 kshv-miR-K12-6-3p -0.56 -0.11 -0.52 -0.44 -0.56 -0.4717650 kshv-miR-K12-6-5p NA NA NA NA NA NA17437 kshv-miR-K12-7 NA NA NA NA NA NA17596 kshv-miR-K12-8 -0.29 -0.18 NA -0.20 -0.21 -0.1917419 kshv-miR-K12-9 NA NA NA NA NA NA42774 kshv-miR-K12-9* NA NA NA NA NA NA17614 sv40-miR-S1-3p NA NA NA NA NA NA17492 sv40-miR-S1-5p -0.49 -0.67 -0.86 -0.42 -0.72 -0.4113170 0 NA NA NA NA NA NA42860 0 0.46 0.51 0.51 0.78 0.91 0.9430768 0 NA NA -1.06 NA NA NA42495 0 NA NA NA NA NA NA43009 0 -0.61 -0.62 -0.60 -0.52 -0.45 -0.3511225 0 NA NA NA NA NA NA14305 0 NA NA NA NA NA NA17537 0 NA -0.85 NA NA NA NA28054 0 NA NA NA NA NA NA42449 0 NA NA NA NA NA NA42611 0 NA NA NA NA NA NA

Page 56: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

U87

shQk1.1 shQk1.2 shQk2.1 shQk2.2 shGFP.1 shGFP.2 ΔLMR ΔLMR

Probe Id Annotation Slide 7 Slide 8 Slide 9 Slide 10 Slide 11 Slide 12 Count shQk1 vs GFPshQk2 vs GFP MAX11065 hsa-miR-335 -0.98 -0.84 1.54 1.90 -0.76 -0.93 6 -0.06 2.57 2.5742554 hsa-miR-923 1.96 -1.00 -0.74 -1.22 -0.99 -0.80 6 1.38 -0.08 1.3813140 hsa-miR-138 0.36 0.48 1.71 1.26 0.44 0.30 6 0.05 1.11 1.113980 hsa-miR-7 -0.34 -0.18 -0.48 -0.59 -1.39 -1.25 6 1.06 0.79 1.06

17885 hsa-miR-886-5p -0.61 -0.39 0.24 0.15 -0.62 -0.74 6 0.18 0.87 0.8717718 hsa-miR-92b 0.61 0.83 -0.05 0.20 0.99 0.85 6 -0.20 -0.84 0.8410964 hsa-miR-155 0.76 0.44 -0.11 -0.12 0.79 0.64 6 -0.12 -0.83 0.8342640 hsa-miR-20b -0.83 0.61 -0.42 -0.09 0.52 0.53 6 -0.64 -0.78 0.7842648 hsa-miR-106a -0.56 0.73 -0.26 0.11 0.81 0.54 6 -0.59 -0.75 0.7517830 hsa-miR-885-5p 0.87 0.76 1.04 1.45 0.48 0.52 6 0.32 0.74 0.7442650 hsa-miR-17 -0.18 0.97 0.03 0.32 0.85 0.94 6 -0.50 -0.72 0.7242806 hsa-miR-886-3p -0.83 -0.53 0.12 0.04 -0.73 -0.53 6 -0.05 0.71 0.7110998 hsa-miR-19b 0.64 0.58 -0.05 0.27 0.80 0.84 6 -0.21 -0.71 0.715740 hsa-miR-21 0.93 0.66 -0.31 -0.13 0.12 0.08 6 0.70 -0.32 0.70

17848 miRPlus_17848 -0.30 -0.70 -0.03 -0.13 -0.70 -0.82 6 0.26 0.68 0.6842696 hsa-miR-943 0.55 0.72 0.93 1.44 1.25 1.35 6 -0.66 -0.12 0.6611074 hsa-miR-34c-5p -2.93 -3.11 -2.03 -3.24 -3.27 -3.32 6 0.27 0.66 0.6642649 hsa-miR-20a -0.22 0.91 0.22 0.14 0.89 0.76 6 -0.48 -0.65 0.6513177 hsa-miR-143 -2.80 -2.60 -2.12 -2.49 -2.83 -3.02 6 0.23 0.62 0.6211052 hsa-miR-31 -3.90 -4.39 -2.95 -4.35 -4.22 -4.26 6 0.10 0.59 0.5942588 hsa-miR-18a -0.05 0.34 -0.43 -0.22 0.28 0.25 6 -0.11 -0.59 0.5942644 hsa-miR-18b -0.37 -0.02 -0.23 0.03 0.42 0.34 6 -0.58 -0.48 0.5829562 hsa-miR-199a-5p -2.68 -2.88 -1.63 -2.99 -2.94 -2.85 6 0.11 0.58 0.5810997 hsa-miR-19a 1.26 1.36 0.41 0.58 1.11 1.04 6 0.23 -0.58 0.5810925 hsa-miR-10b -0.17 0.42 0.44 0.53 0.65 0.75 6 -0.57 -0.22 0.5719581 hsa-miR-100 -0.47 -0.05 0.68 0.50 0.04 0.00 6 -0.28 0.57 0.5742730 hsa-miR-423-3p -0.05 0.04 -0.35 -0.08 0.36 0.33 6 -0.35 -0.56 0.56

Page 57: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

30687 hsa-miR-93 -0.71 -0.55 -0.23 -0.38 0.05 -0.22 6 -0.55 -0.22 0.5542581 hsa-miR-513a-5p 1.23 -0.20 0.09 0.08 0.01 -0.07 6 0.55 0.12 0.5511260 hsa-miR-151-5p -0.79 -0.03 -0.04 0.29 0.10 0.16 6 -0.54 0.00 0.5442540 hsa-miR-494 0.21 -0.57 -0.86 -0.67 -0.74 -0.69 6 0.53 -0.06 0.5314306 hsa-miR-381 0.15 -0.64 -0.64 -0.48 -0.65 -0.92 6 0.53 0.22 0.5317280 hsa-miR-15b -0.90 -0.79 -0.20 -0.15 -0.21 -0.41 6 -0.53 0.14 0.5342923 hsa-miR-30c -1.15 -0.65 -0.60 -0.58 -0.31 -0.46 6 -0.51 -0.21 0.5110975 hsa-miR-182 -2.14 -2.01 -1.36 -1.63 -1.99 -2.00 6 -0.08 0.50 0.5010987 hsa-miR-193b 0.13 0.09 -0.35 -0.56 0.07 0.02 6 0.07 -0.50 0.5042994 hsa-miR-620 1.07 0.20 0.30 0.23 0.21 0.06 6 0.50 0.13 0.5029190 hsa-miR-708 -0.84 -0.35 -0.18 0.06 -0.56 -0.56 6 -0.04 0.49 0.4942865 hsa-miR-181a 1.00 0.84 0.01 0.42 0.72 0.68 6 0.22 -0.49 0.4942487 miRPlus_42487 2.17 1.37 1.18 0.99 1.48 1.67 6 0.20 -0.49 0.4919588 hsa-miR-17* 0.50 0.66 0.25 0.33 0.78 0.76 6 -0.19 -0.48 0.4810977 hsa-miR-183 -1.09 -0.70 0.01 -0.08 -0.50 -0.53 6 -0.38 0.48 0.4810995 hsa-miR-199a-3p/hsa-miR-199b-3p-3.49 -3.62 -2.54 -3.76 -3.61 -3.64 6 0.08 0.48 0.4842965 hsa-miR-424 0.18 0.30 0.47 0.55 0.04 0.03 6 0.20 0.47 0.4742641 hsa-miR-145 -1.80 -1.46 -1.18 -1.22 -1.61 -1.70 6 0.02 0.45 0.454700 hsa-miR-140-5p -1.11 -0.73 -0.34 -0.86 -1.03 -1.06 6 0.12 0.45 0.45

27559 hsa-miR-744 -1.38 -1.18 -1.08 -1.06 -0.84 -0.83 6 -0.44 -0.24 0.4442526 miRPlus_42526 1.96 1.61 1.19 1.35 1.44 1.27 6 0.43 -0.09 0.4342739 hsa-miR-339-5p -0.51 -0.38 -0.20 0.03 -0.47 -0.56 6 0.07 0.43 0.4311014 hsa-miR-214 -1.64 -1.92 -1.45 -2.01 -2.22 -2.07 6 0.36 0.42 0.4242589 hsa-miR-509-3-5p 0.20 -0.44 0.22 0.16 -0.18 -0.28 6 0.11 0.42 0.4218739 hsa-miR-186 -0.24 -0.29 0.25 0.25 0.07 0.23 6 -0.42 0.10 0.4242571 hsa-miR-129* -0.57 -0.04 -0.09 0.12 0.09 0.13 6 -0.41 -0.09 0.4110923 hsa-miR-107 -0.81 -0.60 -0.38 -0.54 -0.27 -0.31 6 -0.41 -0.17 0.4117565 hsa-miR-30b -1.03 -0.58 -0.55 -0.47 -0.35 -0.45 6 -0.41 -0.11 0.4127898 hsa-miR-768-3p 1.17 0.72 0.45 0.44 0.79 0.89 6 0.10 -0.40 0.4042968 hsa-miR-202 -0.21 -0.70 -0.17 -0.23 -0.49 -0.69 6 0.13 0.39 0.3911030 hsa-miR-26a -0.53 0.15 -0.06 0.23 0.22 0.17 6 -0.39 -0.11 0.3917810 hsa-miR-29b-1* -0.01 0.49 0.19 0.42 0.60 0.65 6 -0.38 -0.32 0.3810919 hsa-miR-103 -1.05 -0.73 -0.55 -0.70 -0.48 -0.54 6 -0.38 -0.12 0.3817927 hsa-miR-491-3p -0.24 0.24 -0.24 -0.38 0.01 0.13 6 -0.07 -0.38 0.38

Page 58: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42818 hsa-miR-597 -0.84 -0.36 -1.09 -0.55 -0.51 -0.37 6 -0.16 -0.38 0.3817506 hsa-miR-24 -1.38 -1.00 -0.70 -0.89 -0.86 -0.76 6 -0.38 0.02 0.3842630 hsa-miR-140-3p -2.61 -2.38 -1.92 -2.03 -2.15 -2.10 6 -0.37 0.16 0.3727533 hsa-miR-320a 0.33 0.24 0.04 0.15 0.45 0.46 6 -0.18 -0.36 0.3617869 miRPlus_17869 0.22 -0.08 -0.41 -0.35 -0.33 -0.25 6 0.36 -0.09 0.3642807 hsa-miR-663 0.23 0.09 -0.70 -0.14 -0.04 -0.08 6 0.22 -0.36 0.3610986 hsa-miR-193a-3p -0.60 -0.77 -1.03 -0.72 -1.14 -0.95 6 0.36 0.17 0.3611184 hsa-miR-99b -1.97 -1.73 -1.39 -1.72 -1.48 -1.50 6 -0.35 -0.07 0.3517573 hsa-miR-625 0.01 0.32 0.34 0.43 0.52 0.50 6 -0.34 -0.13 0.3442652 hsa-miR-584 1.12 0.02 0.37 0.76 0.18 0.27 6 0.34 0.33 0.3410928 hsa-miR-125a-5p -0.36 -0.32 -0.39 -0.59 -0.18 -0.12 6 -0.19 -0.34 0.3410936 hsa-miR-130b 0.34 0.48 0.40 0.21 0.61 0.66 6 -0.22 -0.33 0.3314301 hsa-miR-361-5p 0.17 0.54 0.19 0.34 0.62 0.57 6 -0.24 -0.33 0.3342529 hsa-miR-939 0.67 0.19 0.15 0.21 0.13 0.08 6 0.32 0.08 0.3242808 hsa-miR-874 1.03 0.92 0.42 0.70 0.87 0.88 6 0.10 -0.32 0.3242583 hsa-miR-129-3p -0.76 -0.40 -0.32 -0.29 -0.18 -0.34 6 -0.31 -0.04 0.3110985 hsa-miR-191 -0.47 -0.35 0.06 0.06 -0.04 -0.15 6 -0.31 0.16 0.3142744 hsa-miR-23a -0.39 -0.18 -0.30 -0.35 0.04 -0.07 6 -0.27 -0.31 0.3142538 hsa-miR-196a* 0.41 0.17 -0.17 -0.05 0.20 0.20 6 0.09 -0.31 0.3111027 hsa-miR-23b -0.77 -0.33 -0.35 -0.45 -0.16 -0.32 6 -0.31 -0.16 0.3142751 hsa-miR-720 0.49 0.56 -0.14 0.18 0.11 0.54 6 0.19 -0.31 0.3110967 hsa-miR-16 -0.91 -0.16 -0.20 -0.42 -0.16 -0.30 6 -0.30 -0.08 0.3029575 hsa-miR-32* 0.71 0.17 0.38 0.15 0.17 0.10 6 0.30 0.13 0.3011163 hsa-miR-519d 0.08 0.65 0.15 0.03 0.25 0.52 6 -0.02 -0.30 0.3019004 hsa-let-7c -0.11 -0.24 0.01 0.19 -0.18 -0.21 6 0.02 0.29 0.2942769 hsa-let-7b* -0.12 -0.09 0.04 0.39 -0.05 -0.12 6 -0.02 0.29 0.2913485 hsa-miR-10a 0.33 0.99 0.64 0.95 0.89 1.01 6 -0.29 -0.15 0.2942735 hsa-miR-371-5p 0.87 0.35 0.13 0.04 0.35 0.41 6 0.23 -0.29 0.2927560 miRPlus_27560 0.31 -0.01 0.41 0.33 0.01 0.15 6 0.07 0.29 0.2917546 hsa-miR-585 0.76 0.86 0.54 0.51 0.87 0.76 6 0.00 -0.29 0.2913143 hsa-miR-301a -1.64 -1.65 -0.81 -1.66 -1.51 -1.54 6 -0.12 0.29 0.2917748 hsa-let-7a -0.38 0.03 -0.11 0.11 0.23 -0.01 6 -0.28 -0.11 0.2810962 hsa-miR-154 -0.61 -0.34 -0.10 -0.08 -0.11 -0.27 6 -0.28 0.10 0.2830787 hsa-miR-125b -1.07 -0.83 -0.36 -0.68 -0.86 -0.75 6 -0.15 0.28 0.28

Page 59: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17463 hsa-miR-151-3p 0.02 0.08 0.20 0.23 0.38 0.28 6 -0.28 -0.11 0.2842914 hsa-miR-550 -0.18 0.57 -0.11 -0.04 0.19 0.21 6 0.00 -0.27 0.2742869 hsa-miR-936 -2.83 -2.99 -2.51 -2.64 -2.69 -3.00 6 -0.07 0.27 0.2742761 hsa-miR-675 0.65 0.58 0.12 0.52 0.58 0.60 6 0.02 -0.27 0.2710306 hsa-miR-146b-5p -0.78 -0.75 -0.63 -0.80 -1.04 -0.93 6 0.22 0.27 0.2742716 hsa-miR-33a 0.11 -0.43 -0.48 0.00 -0.50 -0.36 6 0.27 0.19 0.2711020 hsa-miR-22 -0.36 -0.39 -0.20 -0.73 -0.57 -0.70 6 0.26 0.17 0.2613137 hsa-miR-519c-5p/hsa-miR-519b-5p/hsa-miR-523*/hsa-miR-518e*/hsa-miR-522*/hsa-miR-519a*-0.25 -0.33 -0.66 -0.27 -0.12 -0.29 6 -0.09 -0.26 0.2642917 hsa-miR-551b 0.27 0.36 0.29 0.20 0.13 -0.02 6 0.26 0.19 0.2642785 hsa-miR-921 0.75 -0.14 0.02 0.08 0.07 0.02 6 0.26 0.01 0.2610138 hsa-miR-130a -1.37 -0.75 -1.01 -1.00 -0.76 -0.85 6 -0.25 -0.20 0.2517676 hsa-miR-152 -0.51 -0.41 -0.26 -0.26 -0.16 -0.26 6 -0.25 -0.06 0.2519582 hsa-miR-106b -0.98 -0.89 -0.71 -0.76 -0.59 -0.78 6 -0.25 -0.05 0.2542671 hsa-miR-298 0.64 -0.53 -0.37 -0.21 -0.09 -0.30 6 0.25 -0.09 0.255250 hsa-miR-105 0.03 0.09 -0.34 -0.25 -0.05 -0.05 6 0.11 -0.25 0.25

17909 hsa-miR-31* -1.14 -1.06 -0.78 -1.18 -1.20 -1.25 6 0.13 0.24 0.2442831 hsa-miR-28-5p -0.29 0.09 0.36 0.13 0.13 0.15 6 -0.24 0.10 0.2442679 hsa-miR-642 1.05 0.85 0.73 0.63 0.68 0.75 6 0.24 -0.03 0.2442591 hsa-miR-634 0.51 0.41 0.91 0.80 0.68 0.72 6 -0.24 0.15 0.2442532 hsa-miR-22* -0.34 -0.11 -0.15 -0.10 0.02 0.01 6 -0.24 -0.14 0.2442542 hsa-miR-589 -0.97 -0.31 -0.76 -0.40 -0.44 -0.37 6 -0.24 -0.17 0.2417522 hsa-miR-658 0.65 0.43 0.45 0.46 0.39 0.22 6 0.24 0.15 0.2442972 hsa-miR-509-5p 0.21 -0.31 -0.59 -0.17 -0.05 -0.25 6 0.10 -0.23 0.2328431 miRPlus_28431 1.45 0.97 0.84 0.89 1.02 0.94 6 0.23 -0.12 0.2342950 hsa-miR-24-2* -2.20 -1.84 -1.52 -1.86 -1.72 -1.86 6 -0.23 0.10 0.2327565 hsa-miR-423-5p 0.88 0.85 0.69 0.56 0.83 0.88 6 0.01 -0.23 0.2329852 hsa-miR-9* -0.73 -0.05 -0.26 -0.09 -0.15 -0.18 6 -0.22 -0.01 0.2242564 hsa-miR-26b -0.50 0.17 0.10 0.16 0.10 0.00 6 -0.22 0.07 0.2210972 hsa-miR-181b 0.02 0.02 0.05 0.04 0.24 0.24 6 -0.22 -0.20 0.2242531 hsa-miR-602 0.44 0.30 0.44 0.37 0.15 0.22 6 0.18 0.22 0.2242820 hsa-miR-302d* -1.83 -2.15 -1.91 -1.80 -2.02 -2.12 6 0.08 0.22 0.2242825 hsa-miR-888* -0.48 -0.10 -0.52 -0.41 -0.36 -0.14 6 -0.04 -0.21 0.2142459 hsa-let-7e -0.44 0.05 -0.27 -0.32 -0.06 -0.11 6 -0.11 -0.21 0.2114302 hsa-miR-374b -0.95 -0.74 -0.69 -0.42 -0.56 -0.70 6 -0.21 0.08 0.21

Page 60: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17953 hsa-miR-183* 0.10 -0.10 0.05 0.00 -0.07 -0.31 6 0.19 0.21 0.2142856 miRPlus_42856 -0.80 -1.03 -0.97 -1.01 -0.77 -0.80 6 -0.13 -0.20 0.2042958 hsa-miR-628-3p 1.16 1.08 0.84 1.04 0.87 0.95 6 0.20 0.03 0.2042929 hsa-miR-25* 0.25 -0.26 -0.13 0.29 0.15 -0.41 6 0.12 0.20 0.2042513 hsa-miR-300 0.49 0.07 0.03 0.13 0.12 0.04 6 0.20 0.00 0.2011022 hsa-miR-221 0.38 0.22 0.52 0.72 0.57 0.42 6 -0.20 0.12 0.2042887 hsa-miR-331-3p -1.28 -0.96 -0.86 -0.86 -0.93 -0.92 6 -0.20 0.06 0.2017752 hsa-let-7f -1.19 -0.74 -0.61 -0.54 -0.86 -0.67 6 -0.20 0.19 0.2042486 hsa-miR-149* 0.57 0.97 0.54 0.34 0.78 0.36 6 0.20 -0.13 0.2032825 hsa-miR-620 0.18 -0.03 0.28 0.15 0.09 -0.04 6 0.05 0.20 0.2017552 hsa-miR-617 0.79 0.59 0.41 0.50 0.57 0.43 6 0.19 -0.04 0.1917608 hsa-miR-425 -0.01 0.09 0.20 0.26 0.25 0.20 6 -0.19 0.01 0.1913131 hsa-miR-518c* 0.46 0.06 0.06 0.20 0.09 0.05 6 0.19 0.06 0.1911105 hsa-miR-378 -0.67 -0.55 -0.38 -0.45 -0.47 -0.37 6 -0.19 0.01 0.1929502 hsa-let-7b 0.09 0.08 -0.17 0.27 -0.23 0.03 6 0.19 0.15 0.1942962 hsa-miR-193b* -0.11 -0.41 -0.01 -0.11 -0.09 -0.40 6 -0.01 0.19 0.1911175 hsa-miR-525-5p 0.07 0.04 0.03 0.16 0.26 0.22 6 -0.19 -0.15 0.1917859 hsa-miR-200b* 0.25 0.20 0.42 0.30 0.18 0.17 6 0.04 0.18 0.1814285 hsa-miR-487b -1.02 -0.49 -0.87 -0.83 -0.74 -0.59 6 -0.09 -0.18 0.1842872 hsa-miR-138-1* -0.31 0.16 0.22 0.35 0.02 0.19 6 -0.18 0.18 0.1811078 hsa-miR-365 -1.08 -0.56 -0.62 -1.03 -0.97 -1.03 6 0.18 0.17 0.1817668 hsa-miR-552 0.33 0.13 0.20 0.56 0.17 0.25 6 0.02 0.18 0.1810978 hsa-miR-184 0.54 0.43 0.51 0.38 0.37 0.26 6 0.17 0.13 0.1742550 hsa-miR-516a-5p -0.08 -0.46 -0.63 -0.47 -0.33 -0.42 6 0.11 -0.17 0.1728966 hsa-miR-574-3p 0.12 -0.20 -0.01 0.10 0.13 0.12 6 -0.17 -0.08 0.1742701 hsa-miR-30c-2* 0.41 0.56 0.79 0.49 0.40 0.54 6 0.02 0.17 0.1719580 hsa-let-7i -0.56 -1.05 -0.58 -0.75 -0.77 -0.91 6 0.03 0.17 0.1717952 miRPlus_17952 0.89 0.04 -0.06 0.41 0.27 0.32 6 0.17 -0.12 0.1728191 hsa-miR-30e -0.46 0.18 -0.17 0.11 0.03 0.01 6 -0.17 -0.05 0.1727551 hsa-miR-612 0.95 0.57 0.78 0.59 0.85 0.85 6 -0.09 -0.17 0.1717566 hsa-miR-629* -0.15 0.17 -0.34 -0.01 -0.03 0.00 6 0.02 -0.17 0.1713175 hsa-miR-27b -0.86 -0.36 -0.70 -0.40 -0.57 -0.32 6 -0.17 -0.11 0.1727540 hsa-miR-198 0.32 0.20 0.51 0.35 0.29 0.24 6 0.00 0.16 0.1627217 hsa-miR-34a 0.23 0.57 0.76 0.49 0.60 0.52 6 -0.16 0.06 0.16

Page 61: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17750 hsa-let-7d -1.51 -1.47 -1.23 -1.16 -1.33 -1.33 6 -0.16 0.13 0.1631057 hsa-miR-576-3p 0.27 -0.34 -0.21 -0.15 -0.14 -0.26 6 0.16 0.02 0.1611182 hsa-miR-98 -0.97 -0.57 -0.63 -0.83 -0.49 -0.73 6 -0.16 -0.12 0.164040 hsa-miR-9 -1.16 -0.85 -0.52 -0.87 -0.82 -0.89 6 -0.15 0.16 0.16

11039 hsa-miR-29a 0.47 0.36 0.30 0.13 0.34 0.41 6 0.04 -0.16 0.1642708 hsa-miR-99a -1.02 -0.56 -0.47 -0.57 -0.56 -0.71 6 -0.16 0.11 0.1642682 hsa-miR-25 -0.03 0.00 -0.20 -0.11 0.05 -0.05 6 -0.01 -0.16 0.1617858 miRPlus_17858 0.80 0.51 0.52 0.72 0.78 0.78 6 -0.13 -0.16 0.1642798 hsa-miR-549 -1.01 -1.44 -1.29 -1.57 -1.33 -1.43 6 0.15 -0.05 0.1542783 hsa-miR-197 -0.33 -0.32 -0.36 -0.27 -0.17 -0.18 6 -0.15 -0.14 0.155560 hsa-miR-185 0.29 -0.17 -0.02 -0.12 -0.03 -0.16 6 0.15 0.03 0.15

31026 hsa-miR-101 0.25 0.04 -0.13 0.52 -0.02 0.12 6 0.10 0.15 0.1519593 hsa-miR-27a 0.04 0.59 0.06 0.08 0.04 0.30 6 0.15 -0.10 0.1517888 hsa-let-7a* 0.18 0.18 0.37 0.21 0.34 0.32 6 -0.15 -0.04 0.1513132 hsa-miR-519e* -0.26 -0.29 -0.40 -0.30 -0.36 -0.49 6 0.15 0.08 0.1528302 miRPlus_28302 -0.62 -0.67 -0.81 -0.70 -0.67 -0.55 6 -0.03 -0.15 0.1542593 hsa-miR-623 1.17 0.91 0.75 0.81 0.88 0.97 6 0.12 -0.14 0.1442537 hsa-miR-520d-5p -0.89 -0.59 -0.92 -0.80 -0.77 -0.66 6 -0.03 -0.14 0.1442762 hsa-miR-665 0.71 0.16 0.23 0.61 0.26 0.32 6 0.14 0.13 0.1419596 hsa-miR-30d -0.06 -0.22 0.15 0.05 -0.07 0.07 6 -0.14 0.10 0.1411013 hsa-miR-181a* 0.16 0.52 0.58 0.35 0.47 0.49 6 -0.14 -0.01 0.1442476 hsa-miR-374b* 0.66 0.62 0.58 0.45 0.50 0.50 6 0.14 0.02 0.1411164 hsa-miR-519e -0.11 0.31 0.00 0.07 0.14 0.20 6 -0.07 -0.13 0.1317836 hsa-miR-30b* 0.25 -0.09 0.06 0.15 0.19 0.24 6 -0.13 -0.11 0.1327378 hsa-miR-374a -0.21 0.13 0.03 0.30 0.03 0.16 6 -0.13 0.07 0.1327720 hsa-miR-15a -0.20 0.10 -0.10 -0.03 -0.21 -0.16 6 0.13 0.12 0.1342442 hsa-miR-498 0.60 0.73 0.71 0.72 0.52 0.65 6 0.08 0.13 0.1342467 hsa-miR-129-5p 1.13 1.33 1.22 1.21 1.07 1.13 6 0.13 0.11 0.1342699 hsa-miR-625* 0.85 1.10 0.98 0.89 0.82 0.88 6 0.13 0.09 0.1319585 hsa-miR-148b -0.33 -0.55 -0.23 -0.39 -0.58 -0.30 6 0.00 0.13 0.1342643 hsa-miR-518b 1.40 1.33 0.93 1.35 1.30 1.24 6 0.09 -0.13 0.1342475 hsa-miR-221* 0.06 0.50 0.37 0.63 0.51 0.30 6 -0.12 0.09 0.1217377 hsa-miR-600 -0.13 0.08 0.26 0.09 0.22 -0.02 6 -0.12 0.08 0.1217863 hsa-miR-934 0.17 -0.10 0.24 0.02 0.10 -0.07 6 0.02 0.12 0.12

Page 62: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17354 hsa-miR-637 0.02 0.37 0.10 0.11 0.24 0.21 6 -0.02 -0.12 0.1211040 hsa-miR-29b 0.09 -0.06 -0.14 0.00 0.00 0.08 6 -0.03 -0.11 0.1142724 hsa-miR-34b 0.23 0.13 0.04 0.00 0.12 0.14 6 0.05 -0.11 0.1117955 miRPlus_17955 0.22 0.08 -0.29 0.17 0.09 -0.01 6 0.11 -0.10 0.1129871 hsa-miR-768-5p 0.29 -0.07 0.28 0.07 -0.02 0.14 6 0.05 0.11 0.1117882 hsa-miR-20b* 0.46 0.49 0.24 0.31 0.39 0.39 6 0.09 -0.11 0.1129872 hsa-miR-340 -0.78 -0.31 -0.47 -0.38 -0.57 -0.49 6 -0.01 0.11 0.1111135 hsa-miR-503 1.10 0.68 0.69 0.81 0.83 0.74 6 0.11 -0.03 0.1142749 hsa-miR-659 -1.29 -1.37 -1.30 -1.22 -1.33 -1.40 6 0.04 0.10 0.1011224 hsa-miR-30e* 0.46 0.67 0.74 0.56 0.60 0.50 6 0.01 0.10 0.1027740 hsa-miR-574-5p 0.28 -0.20 0.17 0.02 -0.07 0.06 6 0.05 0.10 0.1017295 hsa-miR-583 0.83 0.31 0.55 0.22 0.53 0.44 6 0.08 -0.10 0.1042900 hsa-miR-220b 0.09 0.02 0.08 0.23 0.14 -0.01 6 -0.01 0.09 0.0911048 hsa-miR-30a -0.56 -0.45 -0.66 -0.49 -0.46 -0.51 6 -0.02 -0.09 0.0927672 hsa-miR-615-3p 0.47 0.40 0.64 0.37 0.48 0.34 6 0.03 0.09 0.0942793 miRPlus_42793 -0.53 -0.81 -0.80 -0.66 -0.76 -0.76 6 0.09 0.04 0.0927961 hsa-miR-891a -0.27 -0.36 -0.63 -0.23 -0.39 -0.41 6 0.09 -0.03 0.0942902 hsa-miR-185 -0.12 -0.08 -0.02 -0.03 -0.09 -0.11 6 0.00 0.08 0.0811045 hsa-miR-302c* 0.18 -0.19 -0.11 0.18 0.02 0.12 6 -0.08 -0.03 0.0842745 miRPlus_42745 1.39 1.12 1.06 1.15 1.10 1.26 6 0.08 -0.07 0.0811023 hsa-miR-222 0.34 0.41 0.24 0.51 0.44 0.46 6 -0.07 -0.08 0.0827544 hsa-miR-363* 0.79 0.64 0.99 0.54 0.77 0.61 6 0.03 0.08 0.0842573 hsa-miR-1 -0.07 -0.17 -0.08 0.04 0.05 -0.14 6 -0.08 0.02 0.0842521 miRPlus_42521 1.28 0.87 1.14 1.11 0.97 1.13 6 0.02 0.07 0.0717878 hsa-miR-193a-5p 1.27 0.63 0.93 0.94 0.79 0.96 6 0.07 0.06 0.0717942 hsa-miR-125a-3p 0.28 0.35 0.48 0.19 0.11 0.42 6 0.05 0.07 0.0717904 hsa-miR-185* 0.27 0.23 0.24 0.18 0.15 0.21 6 0.07 0.03 0.0711177 hsa-miR-518a-5p/hsa-miR-527-0.05 -0.28 -0.31 -0.16 -0.26 -0.21 6 0.07 0.00 0.0742920 hsa-miR-29a* 0.46 0.72 0.33 0.64 0.60 0.51 6 0.04 -0.07 0.0742727 hsa-miR-668 -0.51 -0.13 -0.51 -0.22 -0.22 -0.37 6 -0.02 -0.07 0.0742524 hsa-miR-21* 0.26 0.33 0.17 0.27 0.30 0.28 6 0.00 -0.07 0.0742539 hsa-miR-933 -0.64 -0.65 -0.77 -0.75 -0.72 -0.67 6 0.05 -0.06 0.0611041 hsa-miR-29c -0.44 -0.36 -0.35 -0.28 -0.39 -0.35 6 -0.03 0.05 0.0511142 hsa-miR-510 0.12 -0.39 -0.08 -0.03 -0.06 -0.11 6 -0.05 0.03 0.05

Page 63: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42530 miRPlus_42530 -0.24 -0.18 -0.15 -0.12 -0.12 -0.21 6 -0.04 0.04 0.0442575 hsa-miR-24-1* -1.09 -0.99 -0.87 -1.19 -0.97 -1.04 6 -0.04 -0.03 0.0428150 hsa-miR-765 0.62 0.01 0.48 0.24 0.39 0.29 6 -0.02 0.02 0.0242832 hsa-miR-638 0.83 0.86 0.92 0.81 0.86 0.85 6 -0.01 0.01 0.0117876 hsa-miR-125b-1* -0.32 -0.28 NA -0.10 -0.27 -0.20 517842 hsa-miR-141* 1.05 NA 1.14 0.68 1.10 1.10 513148 hsa-miR-195 -0.51 -0.05 -0.03 0.26 -0.16 NA 542797 hsa-miR-210 0.27 0.38 NA 0.23 0.25 0.18 511015 hsa-miR-215 -0.02 -0.21 NA -0.03 -0.04 -0.09 517918 hsa-miR-222* 0.06 0.34 NA 0.36 0.12 0.24 511024 hsa-miR-223 -0.43 -0.65 NA -0.40 -0.35 -0.27 542528 hsa-miR-296-3p 0.15 0.10 NA 0.24 0.19 0.08 542713 hsa-miR-296-5p 1.03 1.00 NA 0.92 0.71 0.90 511053 hsa-miR-32 -0.18 0.08 NA 0.30 -0.08 0.42 532884 hsa-miR-342-3p -0.94 -0.68 NA -0.55 -0.33 -0.47 511097 hsa-miR-382 -0.30 -0.49 NA -0.38 -0.14 -0.26 542448 hsa-miR-409-5p -0.02 -0.34 NA -0.25 -0.18 -0.42 528950 hsa-miR-455-3p 0.23 0.93 NA 0.45 0.81 0.69 513179 hsa-miR-455-5p 0.57 0.74 NA 0.50 0.30 0.32 542694 hsa-miR-485-3p 0.21 0.08 NA 0.05 0.15 0.02 542600 hsa-miR-500* -0.46 -0.52 NA -0.46 -0.44 -0.38 542921 hsa-miR-502-3p -1.05 -0.90 NA -0.74 -0.57 -0.82 511151 hsa-miR-516b 0.21 -0.13 NA 0.15 0.03 -0.04 511176 hsa-miR-526b 0.62 0.40 NA 0.54 0.47 0.36 517272 hsa-miR-551a 0.41 0.40 NA 0.34 0.45 0.29 542726 hsa-miR-671-5p 0.58 0.31 NA 0.50 0.41 0.38 542711 hsa-miR-887 0.14 NA -0.28 0.32 0.16 0.37 513147 hsa-miR-96 -0.47 -0.80 NA -0.43 -0.88 -0.57 542461 hsa-miR-146b-3p 0.37 NA NA 0.09 0.13 0.05 442810 hsa-miR-149 NA -0.76 NA -0.70 -0.71 -0.60 442874 hsa-miR-16-2* NA 0.37 NA 0.28 0.41 0.36 45730 hsa-miR-208a NA -0.15 NA 0.02 0.01 0.05 4

11038 hsa-miR-299-5p NA NA 0.30 0.57 0.65 0.54 432946 hsa-miR-486-5p 0.70 0.68 NA 0.40 0.45 NA 4

Page 64: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

14272 hsa-miR-542-3p NA 0.12 NA 0.10 0.19 0.15 421757 hsa-miR-766 1.02 NA 0.75 0.57 NA 0.78 442728 hsa-miR-92a 0.56 0.65 NA NA 0.86 0.72 442776 hsa-miR-938 0.27 NA NA -0.28 -0.31 -0.38 417898 hsa-miR-99b* NA 0.30 NA 0.27 0.14 0.27 411005 hsa-miR-204 NA NA 0.96 NA 0.98 1.00 311037 hsa-miR-299-3p NA NA -0.56 -0.68 NA -0.70 342577 hsa-miR-361-3p NA NA NA 0.72 0.84 0.85 342623 hsa-miR-483-3p NA NA 0.47 NA 0.67 0.78 342698 hsa-miR-484 NA NA NA -0.23 0.12 -0.10 342661 hsa-miR-492 0.55 0.23 NA 0.34 NA NA 342490 hsa-miR-505* NA NA NA 0.32 0.12 0.33 310618 hsa-miR-524-5p 0.39 NA NA NA 0.48 0.44 342663 hsa-miR-20a* NA 0.47 NA NA 0.58 NA 218847 hsa-miR-450a NA NA NA 0.59 NA 0.69 242703 hsa-miR-490-3p 0.23 NA NA 0.07 NA NA 24610 hsa-miR-126 NA NA NA NA -0.62 NA 1

10937 hsa-miR-132 NA NA NA NA -0.51 NA 110943 hsa-miR-136 NA NA 0.56 NA NA NA 110947 hsa-miR-142-3p NA NA NA 0.43 NA NA 111021 hsa-miR-220a NA NA NA NA -0.07 NA 16880 hsa-miR-297 NA NA NA NA 0.25 NA 1

17929 hsa-miR-335* NA NA NA NA 0.53 NA 127545 hsa-miR-373* NA NA NA 0.44 NA NA 142548 hsa-miR-412 NA NA NA 0.17 NA NA 142654 hsa-miR-483-5p 0.22 NA NA NA NA NA 127549 hsa-miR-548d-3p NA NA 0.78 NA NA NA 117660 hsa-miR-550* NA NA NA NA NA -0.45 117393 hsa-miR-603 NA NA NA NA 0.62 NA 117327 hsa-miR-630 0.28 NA NA NA NA NA 117891 miRPlus_17891 NA NA NA 0.19 NA NA 142653 hsa-let-7c* NA NA NA NA NA NA 042505 hsa-let-7d* NA NA NA NA NA NA 042743 hsa-let-7e* NA NA NA NA NA NA 0

Page 65: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42768 hsa-let-7f-1* NA NA NA NA NA NA 042510 hsa-let-7f-2* NA NA NA NA NA NA 019602 hsa-let-7g NA NA NA NA NA NA 042778 hsa-let-7g* NA NA NA NA NA NA 042534 hsa-let-7i* NA NA NA NA NA NA 042563 hsa-miR-100* NA NA NA NA NA NA 017935 hsa-miR-101* NA NA NA NA NA NA 042562 hsa-miR-105* NA NA NA NA NA NA 042508 hsa-miR-106a* NA NA NA NA NA NA 017854 hsa-miR-106b* NA NA NA NA NA NA 028019 hsa-miR-10a* NA NA NA NA NA NA 042969 hsa-miR-10b* NA NA NA NA NA NA 042848 hsa-miR-1180 NA NA NA NA NA NA 019583 hsa-miR-122 NA NA NA NA NA NA 042551 hsa-miR-122* NA NA NA NA NA NA 014328 hsa-miR-124 NA NA NA NA NA NA 042898 hsa-miR-124* NA NA NA NA NA NA 042845 hsa-miR-125b-2* NA NA NA NA NA NA 033596 hsa-miR-126* NA NA NA NA NA NA 042829 hsa-miR-127-3p NA NA NA NA NA NA 042692 hsa-miR-127-5p NA NA NA NA NA NA 033902 hsa-miR-128 NA NA NA NA NA NA 042710 hsa-miR-1296 NA NA NA NA NA NA 042681 hsa-miR-1307 NA NA NA NA NA NA 042718 hsa-miR-130a* NA NA NA NA NA NA 042787 hsa-miR-130b* NA NA NA NA NA NA 017808 hsa-miR-132* NA NA NA NA NA NA 032809 hsa-miR-133a NA NA NA NA NA NA 030755 hsa-miR-133b NA NA NA NA NA NA 042942 hsa-miR-134 NA NA NA NA NA NA 042839 hsa-miR-135a NA NA NA NA NA NA 042609 hsa-miR-135a* NA NA NA NA NA NA 010942 hsa-miR-135b NA NA NA NA NA NA 042615 hsa-miR-135b* NA NA NA NA NA NA 0

Page 66: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42512 hsa-miR-136* NA NA NA NA NA NA 042686 hsa-miR-136* NA NA NA NA NA NA 010944 hsa-miR-137 NA NA NA NA NA NA 042454 hsa-miR-138-2* NA NA NA NA NA NA 042451 hsa-miR-139-3p NA NA NA NA NA NA 042689 hsa-miR-139-5p NA NA NA NA NA NA 027542 hsa-miR-139-5p NA NA NA NA NA NA 010946 hsa-miR-141 NA NA NA NA NA NA 019015 hsa-miR-142-5p NA NA NA NA NA NA 042515 hsa-miR-143* NA NA NA NA NA NA 029802 hsa-miR-144 NA NA NA NA NA NA 042660 hsa-miR-144* NA NA NA NA NA NA 031867 hsa-miR-145* NA NA NA NA NA NA 010952 hsa-miR-146a NA NA NA NA NA NA 042657 hsa-miR-146a* NA NA NA NA NA NA 010954 hsa-miR-147 NA NA NA NA NA NA 017411 hsa-miR-147b NA NA NA NA NA NA 010955 hsa-miR-148a NA NA NA NA NA NA 017872 hsa-miR-148a* NA NA NA NA NA NA 042736 hsa-miR-148b* NA NA NA NA NA NA 042802 hsa-miR-150 NA NA NA NA NA NA 042850 hsa-miR-150* NA NA NA NA NA NA 042599 hsa-miR-153 NA NA NA NA NA NA 042572 hsa-miR-154* NA NA NA NA NA NA 042949 hsa-miR-155* NA NA NA NA NA NA 042789 hsa-miR-15a* NA NA NA NA NA NA 017902 hsa-miR-15b* NA NA NA NA NA NA 017936 hsa-miR-16-1* NA NA NA NA NA NA 017928 hsa-miR-181a-2* NA NA NA NA NA NA 042496 hsa-miR-181c NA NA NA NA NA NA 042634 hsa-miR-181c* NA NA NA NA NA NA 042840 hsa-miR-181d NA NA NA NA NA NA 010976 hsa-miR-182* NA NA NA NA NA NA 042614 hsa-miR-186* NA NA NA NA NA NA 0

Page 67: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

27539 hsa-miR-187 NA NA NA NA NA NA 042775 hsa-miR-187* NA NA NA NA NA NA 042786 hsa-miR-188-3p NA NA NA NA NA NA 042620 hsa-miR-188-5p NA NA NA NA NA NA 013178 hsa-miR-18a* NA NA NA NA NA NA 028536 hsa-miR-18b* NA NA NA NA NA NA 027536 hsa-miR-190 NA NA NA NA NA NA 032731 hsa-miR-190b NA NA NA NA NA NA 042705 hsa-miR-191* NA NA NA NA NA NA 017732 hsa-miR-192 NA NA NA NA NA NA 017946 hsa-miR-192* NA NA NA NA NA NA 010988 hsa-miR-194 NA NA NA NA NA NA 042570 hsa-miR-194* NA NA NA NA NA NA 042723 hsa-miR-195* NA NA NA NA NA NA 010990 hsa-miR-196a NA NA NA NA NA NA 010991 hsa-miR-196b NA NA NA NA NA NA 019591 hsa-miR-199b-5p NA NA NA NA NA NA 042549 hsa-miR-19a* NA NA NA NA NA NA 017883 hsa-miR-19b-1* NA NA NA NA NA NA 042918 hsa-miR-19b-2* NA NA NA NA NA NA 011000 hsa-miR-200a NA NA NA NA NA NA 013127 hsa-miR-200a* NA NA NA NA NA NA 018900 hsa-miR-200b NA NA NA NA NA NA 017427 hsa-miR-200c NA NA NA NA NA NA 017851 hsa-miR-200c* NA NA NA NA NA NA 042507 hsa-miR-202* NA NA NA NA NA NA 042590 hsa-miR-202* NA NA NA NA NA NA 011004 hsa-miR-203 NA NA NA NA NA NA 042655 hsa-miR-205 NA NA NA NA NA NA 011007 hsa-miR-206 NA NA NA NA NA NA 042555 hsa-miR-208b NA NA NA NA NA NA 011011 hsa-miR-211 NA NA NA NA NA NA 042627 hsa-miR-212 NA NA NA NA NA NA 042560 hsa-miR-214* NA NA NA NA NA NA 0

Page 68: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42553 hsa-miR-216a NA NA NA NA NA NA 017849 hsa-miR-216b NA NA NA NA NA NA 019016 hsa-miR-217 NA NA NA NA NA NA 011018 hsa-miR-218 NA NA NA NA NA NA 042941 hsa-miR-218-1* NA NA NA NA NA NA 042815 hsa-miR-218-2* NA NA NA NA NA NA 021702 hsa-miR-219-1-3p NA NA NA NA NA NA 042834 hsa-miR-219-2-3p NA NA NA NA NA NA 042509 hsa-miR-219-5p NA NA NA NA NA NA 042662 hsa-miR-220c NA NA NA NA NA NA 042460 hsa-miR-223* NA NA NA NA NA NA 042566 hsa-miR-224 NA NA NA NA NA NA 042473 hsa-miR-224 NA NA NA NA NA NA 042638 hsa-miR-23a* NA NA NA NA NA NA 042602 hsa-miR-23b* NA NA NA NA NA NA 042628 hsa-miR-26a-1* NA NA NA NA NA NA 042666 hsa-miR-26a-2* NA NA NA NA NA NA 042523 hsa-miR-26b* NA NA NA NA NA NA 017818 hsa-miR-27a* NA NA NA NA NA NA 042823 hsa-miR-27b* NA NA NA NA NA NA 017940 hsa-miR-28-3p NA NA NA NA NA NA 042792 hsa-miR-29b-2* NA NA NA NA NA NA 014300 hsa-miR-29c* NA NA NA NA NA NA 017886 hsa-miR-301b NA NA NA NA NA NA 011222 hsa-miR-302a NA NA NA NA NA NA 042541 hsa-miR-302a* NA NA NA NA NA NA 011043 hsa-miR-302b NA NA NA NA NA NA 042667 hsa-miR-302b* NA NA NA NA NA NA 011044 hsa-miR-302c NA NA NA NA NA NA 027838 hsa-miR-302d NA NA NA NA NA NA 019595 hsa-miR-30a* NA NA NA NA NA NA 042702 hsa-miR-30c-1* NA NA NA NA NA NA 017853 hsa-miR-30d* NA NA NA NA NA NA 042957 hsa-miR-323-3p NA NA NA NA NA NA 0

Page 69: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42457 hsa-miR-323-5p NA NA NA NA NA NA 042719 hsa-miR-324-3p NA NA NA NA NA NA 042477 hsa-miR-324-5p NA NA NA NA NA NA 011058 hsa-miR-325 NA NA NA NA NA NA 042693 hsa-miR-326 NA NA NA NA NA NA 042675 hsa-miR-328 NA NA NA NA NA NA 011061 hsa-miR-329 NA NA NA NA NA NA 011063 hsa-miR-330-3p NA NA NA NA NA NA 042875 hsa-miR-330-5p NA NA NA NA NA NA 017866 hsa-miR-331-5p NA NA NA NA NA NA 042673 hsa-miR-337-3p NA NA NA NA NA NA 017944 hsa-miR-337-5p NA NA NA NA NA NA 042592 hsa-miR-338-3p NA NA NA NA NA NA 017825 hsa-miR-338-5p NA NA NA NA NA NA 042912 hsa-miR-339-3p NA NA NA NA NA NA 042924 hsa-miR-33a* NA NA NA NA NA NA 042715 hsa-miR-33b NA NA NA NA NA NA 042928 hsa-miR-33b* NA NA NA NA NA NA 042738 hsa-miR-340* NA NA NA NA NA NA 042576 hsa-miR-342-5p NA NA NA NA NA NA 042934 hsa-miR-345 NA NA NA NA NA NA 042759 hsa-miR-346 NA NA NA NA NA NA 017922 hsa-miR-34a* NA NA NA NA NA NA 011073 hsa-miR-34b* NA NA NA NA NA NA 042729 hsa-miR-34c-3p NA NA NA NA NA NA 017893 hsa-miR-362-3p NA NA NA NA NA NA 042503 hsa-miR-362-5p NA NA NA NA NA NA 011077 hsa-miR-363 NA NA NA NA NA NA 014280 hsa-miR-367 NA NA NA NA NA NA 042517 hsa-miR-367* NA NA NA NA NA NA 029529 hsa-miR-369-3p NA NA NA NA NA NA 013145 hsa-miR-369-5p NA NA NA NA NA NA 042967 hsa-miR-370 NA NA NA NA NA NA 011083 hsa-miR-371-3p NA NA NA NA NA NA 0

Page 70: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

11084 hsa-miR-372 NA NA NA NA NA NA 011085 hsa-miR-373 NA NA NA NA NA NA 029577 hsa-miR-374a* NA NA NA NA NA NA 042498 hsa-miR-375 NA NA NA NA NA NA 011089 hsa-miR-376a NA NA NA NA NA NA 042885 hsa-miR-376a* NA NA NA NA NA NA 011090 hsa-miR-376b NA NA NA NA NA NA 042629 hsa-miR-376c NA NA NA NA NA NA 011091 hsa-miR-377 NA NA NA NA NA NA 042899 hsa-miR-377* NA NA NA NA NA NA 011092 hsa-miR-378* NA NA NA NA NA NA 011093 hsa-miR-379 NA NA NA NA NA NA 042889 hsa-miR-379* NA NA NA NA NA NA 042552 hsa-miR-379* NA NA NA NA NA NA 027546 hsa-miR-380 NA NA NA NA NA NA 028161 hsa-miR-380* NA NA NA NA NA NA 011098 hsa-miR-383 NA NA NA NA NA NA 042580 hsa-miR-384 NA NA NA NA NA NA 011240 hsa-miR-409-3p NA NA NA NA NA NA 042925 hsa-miR-409-5p NA NA NA NA NA NA 011102 hsa-miR-410 NA NA NA NA NA NA 017482 hsa-miR-411 NA NA NA NA NA NA 042784 hsa-miR-411* NA NA NA NA NA NA 042764 hsa-miR-412 NA NA NA NA NA NA 017474 hsa-miR-421 NA NA NA NA NA NA 011104 hsa-miR-422a NA NA NA NA NA NA 042603 hsa-miR-424* NA NA NA NA NA NA 011108 hsa-miR-425* NA NA NA NA NA NA 013171 hsa-miR-429 NA NA NA NA NA NA 042612 hsa-miR-431 NA NA NA NA NA NA 042674 hsa-miR-431* NA NA NA NA NA NA 011111 hsa-miR-432 NA NA NA NA NA NA 042584 hsa-miR-432* NA NA NA NA NA NA 042853 hsa-miR-433 NA NA NA NA NA NA 0

Page 71: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

11113 hsa-miR-448 NA NA NA NA NA NA 011114 hsa-miR-449a NA NA NA NA NA NA 033668 hsa-miR-449b NA NA NA NA NA NA 042892 hsa-miR-450b-3p NA NA NA NA NA NA 042896 hsa-miR-450b-5p NA NA NA NA NA NA 042866 hsa-miR-451 NA NA NA NA NA NA 029379 hsa-miR-452 NA NA NA NA NA NA 042598 hsa-miR-452* NA NA NA NA NA NA 042672 hsa-miR-453 NA NA NA NA NA NA 042854 hsa-miR-454 NA NA NA NA NA NA 028520 hsa-miR-454* NA NA NA NA NA NA 042480 hsa-miR-485-5p NA NA NA NA NA NA 042946 hsa-miR-486-3p NA NA NA NA NA NA 013183 hsa-miR-487a NA NA NA NA NA NA 042704 hsa-miR-488 NA NA NA NA NA NA 011120 hsa-miR-488* NA NA NA NA NA NA 042794 hsa-miR-489 NA NA NA NA NA NA 017822 hsa-miR-490-5p NA NA NA NA NA NA 011123 hsa-miR-491-5p NA NA NA NA NA NA 028257 hsa-miR-493 NA NA NA NA NA NA 042936 hsa-miR-493 NA NA NA NA NA NA 011125 hsa-miR-493* NA NA NA NA NA NA 042676 hsa-miR-495 NA NA NA NA NA NA 011128 hsa-miR-496 NA NA NA NA NA NA 042847 hsa-miR-497 NA NA NA NA NA NA 042558 hsa-miR-497* NA NA NA NA NA NA 017831 hsa-miR-499-3p NA NA NA NA NA NA 014313 hsa-miR-499-5p NA NA NA NA NA NA 017875 hsa-miR-500 NA NA NA NA NA NA 042578 hsa-miR-501-3p NA NA NA NA NA NA 042910 hsa-miR-501-5p NA NA NA NA NA NA 011134 hsa-miR-502-5p NA NA NA NA NA NA 028480 hsa-miR-504 NA NA NA NA NA NA 033915 hsa-miR-505 NA NA NA NA NA NA 0

Page 72: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42669 hsa-miR-505 NA NA NA NA NA NA 011138 hsa-miR-506 NA NA NA NA NA NA 011139 hsa-miR-507 NA NA NA NA NA NA 011140 hsa-miR-508-3p NA NA NA NA NA NA 042812 hsa-miR-508-5p NA NA NA NA NA NA 011141 hsa-miR-509-3p NA NA NA NA NA NA 027229 hsa-miR-511 NA NA NA NA NA NA 011144 hsa-miR-512-3p NA NA NA NA NA NA 042930 hsa-miR-512-5p NA NA NA NA NA NA 042960 hsa-miR-513a-3p NA NA NA NA NA NA 042959 hsa-miR-514 NA NA NA NA NA NA 011148 hsa-miR-515-3p NA NA NA NA NA NA 011149 hsa-miR-515-5p NA NA NA NA NA NA 011150 hsa-miR-516a-3p/hsa-miR-516b*NA NA NA NA NA NA 013130 hsa-miR-517* NA NA NA NA NA NA 042484 hsa-miR-517a NA NA NA NA NA NA 042450 hsa-miR-517b NA NA NA NA NA NA 011154 hsa-miR-517c NA NA NA NA NA NA 042520 hsa-miR-518a-3p NA NA NA NA NA NA 042559 hsa-miR-518c NA NA NA NA NA NA 011158 hsa-miR-518d-3p NA NA NA NA NA NA 011159 hsa-miR-518e NA NA NA NA NA NA 042857 hsa-miR-518f NA NA NA NA NA NA 042688 hsa-miR-518f* NA NA NA NA NA NA 042561 hsa-miR-519a NA NA NA NA NA NA 011162 hsa-miR-519b-3p NA NA NA NA NA NA 010482 hsa-miR-519c-3p NA NA NA NA NA NA 011165 hsa-miR-520a-3p NA NA NA NA NA NA 013133 hsa-miR-520a-5p NA NA NA NA NA NA 011166 hsa-miR-520b/hsa-miR-520c-3pNA NA NA NA NA NA 011168 hsa-miR-520d-3p NA NA NA NA NA NA 011169 hsa-miR-520e NA NA NA NA NA NA 042455 hsa-miR-520f NA NA NA NA NA NA 042597 hsa-miR-520g NA NA NA NA NA NA 0

Page 73: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

13146 hsa-miR-520g/hsa-miR-520hNA NA NA NA NA NA 011171 hsa-miR-521 NA NA NA NA NA NA 042483 hsa-miR-522 NA NA NA NA NA NA 042890 hsa-miR-523 NA NA NA NA NA NA 031349 hsa-miR-524-3p NA NA NA NA NA NA 042909 hsa-miR-525-3p NA NA NA NA NA NA 042833 hsa-miR-526a/hsa-miR-520c-5p/hsa-miR-518d-5pNA NA NA NA NA NA 042737 hsa-miR-526b* NA NA NA NA NA NA 042732 hsa-miR-532-3p NA NA NA NA NA NA 017624 hsa-miR-532-5p NA NA NA NA NA NA 014271 hsa-miR-539 NA NA NA NA NA NA 042635 hsa-miR-541 NA NA NA NA NA NA 042617 hsa-miR-541* NA NA NA NA NA NA 017823 hsa-miR-541* NA NA NA NA NA NA 042811 hsa-miR-542-5p NA NA NA NA NA NA 042470 hsa-miR-543 NA NA NA NA NA NA 033043 hsa-miR-544 NA NA NA NA NA NA 033728 hsa-miR-545 NA NA NA NA NA NA 042956 hsa-miR-545* NA NA NA NA NA NA 017535 hsa-miR-548a-3p NA NA NA NA NA NA 030493 hsa-miR-548a-5p NA NA NA NA NA NA 033430 hsa-miR-548b-3p NA NA NA NA NA NA 042791 hsa-miR-548b-5p NA NA NA NA NA NA 033718 hsa-miR-548c-3p NA NA NA NA NA NA 042777 hsa-miR-548c-5p NA NA NA NA NA NA 042756 hsa-miR-548d-5p NA NA NA NA NA NA 042781 hsa-miR-551b* NA NA NA NA NA NA 029460 hsa-miR-553 NA NA NA NA NA NA 042766 hsa-miR-554 NA NA NA NA NA NA 017612 hsa-miR-555 NA NA NA NA NA NA 042447 hsa-miR-556-3p NA NA NA NA NA NA 042955 hsa-miR-556-5p NA NA NA NA NA NA 042760 hsa-miR-557 NA NA NA NA NA NA 017652 hsa-miR-558 NA NA NA NA NA NA 0

Page 74: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

31076 hsa-miR-559 NA NA NA NA NA NA 031517 hsa-miR-561 NA NA NA NA NA NA 017536 hsa-miR-562 NA NA NA NA NA NA 017569 hsa-miR-563 NA NA NA NA NA NA 042944 hsa-miR-564 NA NA NA NA NA NA 042772 hsa-miR-566 NA NA NA NA NA NA 017634 hsa-miR-567 NA NA NA NA NA NA 042995 hsa-miR-568 NA NA NA NA NA NA 014854 hsa-miR-569 NA NA NA NA NA NA 017814 hsa-miR-570 NA NA NA NA NA NA 017490 hsa-miR-571 NA NA NA NA NA NA 042596 hsa-miR-572 NA NA NA NA NA NA 017641 hsa-miR-573 NA NA NA NA NA NA 017626 hsa-miR-575 NA NA NA NA NA NA 042446 hsa-miR-576-5p NA NA NA NA NA NA 042837 hsa-miR-577 NA NA NA NA NA NA 017302 hsa-miR-578 NA NA NA NA NA NA 042622 hsa-miR-579 NA NA NA NA NA NA 017459 hsa-miR-580 NA NA NA NA NA NA 014962 hsa-miR-581 NA NA NA NA NA NA 029328 hsa-miR-582-3p NA NA NA NA NA NA 042800 hsa-miR-582-5p NA NA NA NA NA NA 042544 hsa-miR-582-5p NA NA NA NA NA NA 042754 hsa-miR-586 NA NA NA NA NA NA 017594 hsa-miR-587 NA NA NA NA NA NA 017630 hsa-miR-588 NA NA NA NA NA NA 017570 hsa-miR-589* NA NA NA NA NA NA 042567 hsa-miR-590-3p NA NA NA NA NA NA 031809 hsa-miR-590-5p NA NA NA NA NA NA 042482 hsa-miR-591 NA NA NA NA NA NA 017312 hsa-miR-592 NA NA NA NA NA NA 042504 hsa-miR-593 NA NA NA NA NA NA 042478 hsa-miR-593* NA NA NA NA NA NA 017349 hsa-miR-595 NA NA NA NA NA NA 0

Page 75: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42695 hsa-miR-596 NA NA NA NA NA NA 017637 hsa-miR-598 NA NA NA NA NA NA 030592 hsa-miR-599 NA NA NA NA NA NA 017498 hsa-miR-601 NA NA NA NA NA NA 017592 hsa-miR-604 NA NA NA NA NA NA 042506 hsa-miR-605 NA NA NA NA NA NA 029883 hsa-miR-606 NA NA NA NA NA NA 032190 hsa-miR-607 NA NA NA NA NA NA 042543 hsa-miR-608 NA NA NA NA NA NA 017353 hsa-miR-609 NA NA NA NA NA NA 017445 hsa-miR-610 NA NA NA NA NA NA 042901 hsa-miR-611 NA NA NA NA NA NA 017577 hsa-miR-613 NA NA NA NA NA NA 042935 hsa-miR-614 NA NA NA NA NA NA 042690 hsa-miR-615-5p NA NA NA NA NA NA 042870 hsa-miR-616 NA NA NA NA NA NA 017289 hsa-miR-616* NA NA NA NA NA NA 017336 hsa-miR-618 NA NA NA NA NA NA 042757 hsa-miR-619 NA NA NA NA NA NA 042468 hsa-miR-621 NA NA NA NA NA NA 017493 hsa-miR-622 NA NA NA NA NA NA 032095 hsa-miR-624 NA NA NA NA NA NA 042557 hsa-miR-624* NA NA NA NA NA NA 033407 hsa-miR-626 NA NA NA NA NA NA 017625 hsa-miR-627 NA NA NA NA NA NA 017870 hsa-miR-628-5p NA NA NA NA NA NA 017961 hsa-miR-629 NA NA NA NA NA NA 042700 hsa-miR-631 NA NA NA NA NA NA 017444 hsa-miR-632 NA NA NA NA NA NA 032711 hsa-miR-633 NA NA NA NA NA NA 017391 hsa-miR-635 NA NA NA NA NA NA 042750 hsa-miR-636 NA NA NA NA NA NA 042740 hsa-miR-639 NA NA NA NA NA NA 042758 hsa-miR-640 NA NA NA NA NA NA 0

Page 76: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17530 hsa-miR-641 NA NA NA NA NA NA 017325 hsa-miR-643 NA NA NA NA NA NA 017563 hsa-miR-644 NA NA NA NA NA NA 017613 hsa-miR-645 NA NA NA NA NA NA 042952 hsa-miR-646 NA NA NA NA NA NA 042746 hsa-miR-647 NA NA NA NA NA NA 042547 hsa-miR-648 NA NA NA NA NA NA 015619 hsa-miR-649 NA NA NA NA NA NA 017593 hsa-miR-650 NA NA NA NA NA NA 017394 hsa-miR-651 NA NA NA NA NA NA 042827 hsa-miR-652 NA NA NA NA NA NA 042607 hsa-miR-653 NA NA NA NA NA NA 021498 hsa-miR-654-3p NA NA NA NA NA NA 042843 hsa-miR-654-5p NA NA NA NA NA NA 042465 hsa-miR-655 NA NA NA NA NA NA 029736 hsa-miR-656 NA NA NA NA NA NA 017460 hsa-miR-657 NA NA NA NA NA NA 017338 hsa-miR-660 NA NA NA NA NA NA 042535 hsa-miR-661 NA NA NA NA NA NA 017507 hsa-miR-662 NA NA NA NA NA NA 042525 hsa-miR-671-3p NA NA NA NA NA NA 017347 hsa-miR-708* NA NA NA NA NA NA 011277 hsa-miR-7-1* NA NA NA NA NA NA 042964 hsa-miR-7-2* NA NA NA NA NA NA 042970 hsa-miR-744* NA NA NA NA NA NA 028703 hsa-miR-758 NA NA NA NA NA NA 028759 hsa-miR-758 NA NA NA NA NA NA 042852 hsa-miR-760 NA NA NA NA NA NA 028396 hsa-miR-767-3p NA NA NA NA NA NA 028009 hsa-miR-767-5p NA NA NA NA NA NA 042828 hsa-miR-769-3p NA NA NA NA NA NA 032891 hsa-miR-769-5p NA NA NA NA NA NA 028251 hsa-miR-770-5p NA NA NA NA NA NA 030442 hsa-miR-802 NA NA NA NA NA NA 0

Page 77: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

31436 hsa-miR-873 NA NA NA NA NA NA 017817 hsa-miR-875-3p NA NA NA NA NA NA 017850 hsa-miR-875-5p NA NA NA NA NA NA 028884 hsa-miR-876-3p NA NA NA NA NA NA 042940 hsa-miR-876-5p NA NA NA NA NA NA 030033 hsa-miR-877 NA NA NA NA NA NA 042771 hsa-miR-877* NA NA NA NA NA NA 042633 hsa-miR-885-3p NA NA NA NA NA NA 028889 hsa-miR-888 NA NA NA NA NA NA 042556 hsa-miR-889 NA NA NA NA NA NA 028047 hsa-miR-890 NA NA NA NA NA NA 021501 hsa-miR-891b NA NA NA NA NA NA 042858 hsa-miR-892a NA NA NA NA NA NA 042493 hsa-miR-892b NA NA NA NA NA NA 042932 hsa-miR-920 NA NA NA NA NA NA 042683 hsa-miR-922 NA NA NA NA NA NA 042788 hsa-miR-924 NA NA NA NA NA NA 042926 hsa-miR-92a-1* NA NA NA NA NA NA 042801 hsa-miR-92a-2* NA NA NA NA NA NA 042717 hsa-miR-92b* NA NA NA NA NA NA 042747 hsa-miR-93* NA NA NA NA NA NA 042527 hsa-miR-935 NA NA NA NA NA NA 042514 hsa-miR-937 NA NA NA NA NA NA 042997 hsa-miR-940 NA NA NA NA NA NA 042753 hsa-miR-940 NA NA NA NA NA NA 042814 hsa-miR-941 NA NA NA NA NA NA 042608 hsa-miR-942 NA NA NA NA NA NA 042873 hsa-miR-944 NA NA NA NA NA NA 011181 hsa-miR-95 NA NA NA NA NA NA 042971 hsa-miR-96* NA NA NA NA NA NA 017852 hsa-miR-99a* NA NA NA NA NA NA 011239 miRPlus_11239 NA NA NA NA NA NA 017653 miRPlus_17653 NA NA NA NA NA NA 017820 miRPlus_17820 NA NA NA NA NA NA 0

Page 78: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17824 miRPlus_17824 NA NA NA NA NA NA 017841 miRPlus_17841 NA NA NA NA NA NA 017880 miRPlus_17880 NA NA NA NA NA NA 017892 miRPlus_17892 NA NA NA NA NA NA 017932 miRPlus_17932 NA NA NA NA NA NA 017957 miRPlus_17957 NA NA NA NA NA NA 028534 miRPlus_28534 NA NA NA NA NA NA 030209 miRPlus_30209 NA NA NA NA NA NA 042492 miRPlus_42492 NA NA NA NA NA NA 042720 miRPlus_42720 NA NA NA NA NA NA 042721 miRPlus_42721 NA NA NA NA NA NA 042734 miRPlus_42734 NA NA NA NA NA NA 042780 miRPlus_42780 NA NA NA NA NA NA 042819 miRPlus_42819 NA NA NA NA NA NA 042838 miRPlus_42838 NA NA NA NA NA NA 042859 miRPlus_42859 NA NA NA NA NA NA 014258 hsa_negative_control_1 NA NA NA NA NA NA14259 hsa_negative_control_2 NA NA NA NA NA NA14260 hsa_negative_control_3 NA NA NA NA NA NA14266 hsa_negative_control_4 NA NA NA NA NA NA10898 hsa_negative_control_5 -0.65 -0.05 -0.13 -0.31 -0.30 -0.1410901 hsa_negative_control_6 NA NA NA NA NA NA10902 hsa_negative_control_7 NA NA NA NA NA NA10903 hsa_negative_control_8 NA NA NA NA NA NA19011 hsa_SNORD10 1.32 1.04 0.28 0.51 1.04 1.0319005 hsa_SNORD118 0.35 -0.39 -0.43 -0.39 -0.51 -0.4319606 hsa_SNORD12 0.12 0.25 0.46 0.19 0.33 0.3219603 hsa_SNORD13 -0.16 -0.33 -0.28 -0.37 -0.62 -0.6819013 hsa_SNORD14B 0.92 0.41 0.63 0.42 0.55 0.5719607 hsa_SNORD15A NA NA NA NA NA NA19008 hsa_SNORD2 -0.57 -0.54 -0.55 -0.91 -0.52 -0.4119007 hsa_SNORD3@ 0.19 0.04 0.25 0.03 -0.17 -0.1319604 hsa_SNORD4A 0.03 -0.14 -0.44 -0.69 -0.11 -0.0519605 hsa_SNORD6 0.25 -0.27 -0.52 -0.56 -0.25 -0.14

Page 79: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

11278 U6-snRNA-1 0.46 -0.79 -0.51 -0.83 -0.70 -0.8411279 U6-snRNA-2 0.19 -0.58 -0.33 -0.41 -0.55 -0.4717415 ebv-miR-BART10 NA NA NA NA NA NA42485 ebv-miR-BART10* NA NA NA NA NA NA42545 ebv-miR-BART11-3p NA NA NA NA NA NA17283 ebv-miR-BART11-5p NA NA NA NA NA NA17306 ebv-miR-BART12 NA NA NA NA NA NA27537 ebv-miR-BART13 0.69 0.56 0.48 0.62 0.27 0.4742882 ebv-miR-BART13* NA NA NA NA NA NA17519 ebv-miR-BART1-3p NA NA NA NA NA NA17623 ebv-miR-BART14 NA NA NA NA NA NA17655 ebv-miR-BART14* NA NA NA NA NA NA42897 ebv-miR-BART15 NA NA NA NA NA NA17541 ebv-miR-BART1-5p NA NA NA NA NA NA17358 ebv-miR-BART16 0.23 NA NA -0.09 0.36 -0.0142773 ebv-miR-BART17-3p 0.92 0.74 0.84 0.77 1.10 0.8642943 ebv-miR-BART17-5p -0.12 -0.68 -0.49 -0.47 -0.47 -0.6042466 ebv-miR-BART18-3p NA NA NA NA NA NA17657 ebv-miR-BART18-5p NA NA NA NA NA NA42522 ebv-miR-BART19-3p 0.52 -0.40 0.06 0.10 -0.31 0.1442613 ebv-miR-BART19-5p NA NA NA NA NA NA17585 ebv-miR-BART20-3p NA NA NA NA NA NA17636 ebv-miR-BART20-5p NA NA NA NA NA NA42974 ebv-miR-BART2-3p 0.29 -0.01 -0.15 -0.08 -0.07 -0.1817402 ebv-miR-BART2-5p NA NA NA NA NA NA17589 ebv-miR-BART3 NA NA NA NA NA NA17539 ebv-miR-BART3* NA NA NA NA NA NA17359 ebv-miR-BART4 NA NA NA NA NA NA17532 ebv-miR-BART5 NA NA NA NA NA NA17561 ebv-miR-BART6-3p 0.74 0.03 -0.14 -0.03 0.08 -0.1542855 ebv-miR-BART6-5p NA NA NA NA NA NA42616 ebv-miR-BART7 NA NA NA NA NA NA42954 ebv-miR-BART7* NA NA NA NA NA NA17509 ebv-miR-BART8 NA NA NA NA NA NA

Page 80: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17328 ebv-miR-BART8* -0.49 -0.54 -0.63 -0.68 -0.52 -0.4717332 ebv-miR-BART9 NA NA NA NA NA NA42824 ebv-miR-BART9* NA NA NA NA NA NA42906 ebv-miR-BHRF1-1 -0.46 -0.16 -0.22 -0.21 -0.25 -0.2942951 ebv-miR-BHRF1-2 1.35 1.40 1.05 1.25 1.17 1.3917562 ebv-miR-BHRF1-2* NA NA NA NA NA NA17646 ebv-miR-BHRF1-3 NA NA NA NA NA NA17508 hcmv-miR-UL112 NA NA NA NA NA NA42782 hcmv-miR-UL148D 1.34 0.99 0.94 1.28 1.25 1.0817631 hcmv-miR-UL22A NA NA NA NA NA NA17299 hcmv-miR-UL22A* NA NA NA NA NA NA17439 hcmv-miR-UL36 NA NA NA NA NA NA42610 hcmv-miR-UL36* NA NA NA NA NA NA27541 hcmv-miR-UL70-3p NA NA NA NA NA NA42497 hcmv-miR-UL70-5p NA NA NA NA NA NA42905 hcmv-miR-US25-1 NA NA NA NA NA NA42458 hcmv-miR-US25-1* NA NA NA NA NA NA17529 hcmv-miR-US25-2-3p NA NA NA NA NA NA17619 hcmv-miR-US25-2-5p NA NA NA NA NA NA42755 hcmv-miR-US33-3p NA NA NA NA NA NA42501 hcmv-miR-US33-5p NA NA NA NA NA NA42642 hcmv-miR-US4 NA NA NA NA NA NA17499 hcmv-miR-US5-1 NA NA NA NA NA NA17520 hcmv-miR-US5-2 NA NA NA NA NA NA42533 hiv1-miR-H1 NA NA NA NA NA NA31038 hiv1-miR-N367 NA NA NA NA NA NA30716 hsv1-miR-H1 NA NA NA NA NA NA17567 kshv-miR-K12-1 NA NA NA NA NA NA42656 kshv-miR-K12-10a 0.96 0.82 1.23 1.01 1.05 1.0942624 kshv-miR-K12-10b 1.18 0.90 1.36 0.95 1.31 1.2217571 kshv-miR-K12-11 NA NA NA NA NA NA42516 kshv-miR-K12-12 NA NA NA NA NA NA17470 kshv-miR-K12-2 NA NA NA NA NA NA42795 kshv-miR-K12-3 0.88 0.77 0.78 0.83 0.69 0.75

Page 81: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17315 kshv-miR-K12-3* NA NA NA NA NA NA17418 kshv-miR-K12-4-3p NA NA NA NA NA NA17606 kshv-miR-K12-4-5p NA NA NA NA NA NA17578 kshv-miR-K12-5 NA NA NA NA NA NA17488 kshv-miR-K12-6-3p 0.50 0.47 0.22 0.26 0.57 0.5817650 kshv-miR-K12-6-5p NA NA NA NA NA NA17437 kshv-miR-K12-7 NA NA NA NA NA NA17596 kshv-miR-K12-8 0.21 -0.12 -0.29 0.08 0.07 0.1517419 kshv-miR-K12-9 NA NA NA NA NA NA42774 kshv-miR-K12-9* NA NA NA NA NA NA17614 sv40-miR-S1-3p NA NA NA NA NA NA17492 sv40-miR-S1-5p 1.13 1.12 0.52 0.96 0.97 0.9913170 0 NA NA NA NA NA NA42860 0 -0.61 0.84 -0.13 0.31 0.77 0.7230768 0 NA NA NA -0.90 -1.13 -1.1042495 0 NA NA NA NA NA NA43009 0 -0.28 -0.44 -0.42 -0.15 -0.03 -0.4211225 0 NA NA NA NA NA NA14305 0 NA NA NA NA NA NA17537 0 NA NA NA NA NA NA28054 0 NA NA NA NA NA NA42449 0 NA NA NA NA NA NA42611 0 NA NA NA NA NA NA

Page 82: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

Ink4a/Arf-/- Pten-/- astrocytes

shQk1.1 shQk1.2 shQk2.1 shQk2.2 shGFP.1 shGFP.2 ΔLMR ΔLMR

Probe Id Annotation Slide 13 Slide 14 Slide 15 Slide 16 Slide 17 Slide 18 count shQk1 vs GFPshQk2 vs GFP MAX16528 mmu-miR-706 1.11 1.12 0.55 0.27 0.16 0.30 6 0.88 0.18 0.883980 mmu-miR-7a 0.00 0.37 0.29 0.23 -0.56 -0.60 6 0.77 0.84 0.84

13177 mmu-miR-143 0.86 1.03 0.90 0.88 1.68 1.39 6 -0.59 -0.65 0.6527855 mmu-miR-763 0.41 -0.04 0.65 0.81 0.87 0.62 6 -0.56 -0.01 0.5642804 mmu-miR-712 1.30 0.84 1.12 1.44 0.42 1.03 6 0.34 0.55 0.5517669 mmu-miR-690 1.02 0.93 0.77 0.50 0.40 0.47 6 0.54 0.20 0.5442727 mmu-miR-668 -0.01 -0.41 -0.23 0.04 -0.87 -0.40 6 0.42 0.54 0.5442649 mmu-miR-20a -1.72 -1.25 -1.60 -1.91 -1.25 -1.23 6 -0.24 -0.51 0.5142891 mmu-miR-467e* -0.65 -0.97 -0.54 -0.52 -1.23 -0.82 6 0.22 0.50 0.5027575 mmu-miR-711 0.54 0.29 0.75 0.76 1.01 0.76 6 -0.47 -0.13 0.4742641 mmu-miR-145 0.74 0.78 0.81 0.75 1.29 1.17 6 -0.47 -0.45 0.4717489 mmu-miR-710 0.13 -0.01 0.31 0.41 0.62 0.43 6 -0.46 -0.16 0.4611053 mmu-miR-32 -0.63 -0.49 -0.56 -0.55 -0.13 -0.08 6 -0.46 -0.45 0.4642630 mmu-miR-140* 1.13 0.93 0.76 0.89 0.65 0.50 6 0.45 0.25 0.4517909 mmu-miR-31* 0.66 1.02 0.70 0.71 1.36 0.92 6 -0.30 -0.44 0.4427217 mmu-miR-34a -0.32 -0.12 -0.07 -0.10 0.25 0.14 6 -0.42 -0.29 0.4228547 mmu-miR-675-5p 0.77 0.80 0.90 1.15 1.19 1.21 6 -0.42 -0.18 0.4210306 mmu-miR-146b 1.10 0.97 0.54 0.78 1.28 0.86 6 -0.03 -0.41 0.4142716 mmu-miR-33 0.57 0.58 0.26 0.17 0.26 0.07 6 0.41 0.05 0.4142650 mmu-miR-17 -1.44 -0.98 -1.42 -1.71 -1.28 -1.05 6 -0.04 -0.40 0.4042659 mmu-miR-290-3p -0.16 -0.25 -0.03 0.19 0.20 0.17 6 -0.40 -0.11 0.4042865 mmu-miR-181a 0.14 -0.15 0.04 0.03 -0.51 -0.20 6 0.35 0.39 0.3917748 mmu-let-7a -0.08 0.01 -0.11 -0.23 0.13 0.29 6 -0.25 -0.38 0.3842860 mmu-miR-20b -1.55 -1.09 -1.48 -1.64 -1.17 -1.19 6 -0.14 -0.38 0.3842500 mmu-miR-483* 0.30 0.42 -0.09 0.17 0.55 0.29 6 -0.06 -0.38 0.3811020 mmu-miR-22 0.15 0.18 0.10 0.05 0.72 0.19 6 -0.29 -0.38 0.3814293 mmu-miR-546 -3.07 -2.98 -2.89 -3.02 -2.46 -2.84 6 -0.38 -0.31 0.38

LogMedianRatios

Page 83: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

11040 mmu-miR-29b -0.96 -0.86 -0.77 -0.79 -0.37 -0.71 6 -0.37 -0.24 0.3742619 mmu-miR-709 0.89 0.69 0.90 0.96 0.27 0.85 6 0.23 0.37 0.3733114 mmu-miR-455 -0.45 -0.54 -0.96 -0.76 -0.87 -0.86 6 0.37 0.00 0.3742939 mmu-miR-582-3p -0.53 -0.34 -0.63 -0.99 -0.74 -0.85 6 0.36 -0.02 0.3611065 mmu-miR-335-5p -1.07 -0.92 -1.30 -1.47 -1.47 -1.24 6 0.36 -0.03 0.3642583 mmu-miR-129-3p 1.03 1.09 0.80 0.85 1.23 1.13 6 -0.12 -0.35 0.3517752 mmu-let-7f 0.32 0.67 0.40 0.31 0.78 0.63 6 -0.21 -0.35 0.3529190 mmu-miR-708 0.20 0.27 0.25 0.27 0.68 0.49 6 -0.35 -0.32 0.3511038 mmu-miR-299* 0.73 0.61 0.09 0.30 0.25 0.39 6 0.35 -0.13 0.3517896 mmu-miR-21* -0.63 -0.68 -0.48 -0.53 -0.27 -0.35 6 -0.35 -0.20 0.3542540 mmu-miR-494 0.07 -0.04 -0.22 -0.20 -0.28 -0.37 6 0.34 0.12 0.3410978 mmu-miR-184 -0.47 -0.85 -0.36 -0.20 -0.31 -0.32 6 -0.34 0.03 0.3414301 mmu-miR-361 0.40 0.42 0.14 0.02 0.05 0.08 6 0.34 0.02 0.3411182 mmu-miR-98 0.69 0.89 0.55 0.52 0.89 0.86 6 -0.09 -0.34 0.3411052 mmu-miR-31 0.98 1.06 0.95 0.80 1.34 1.09 6 -0.19 -0.34 0.3417632 mmu-miR-691 0.81 0.57 0.90 1.02 0.50 0.76 6 0.06 0.33 0.3342770 mmu-miR-665 -0.03 -0.47 -0.22 0.06 -0.29 -0.53 6 0.16 0.33 0.3342904 mmu-miR-483 -1.07 -1.28 -0.68 -0.50 -0.93 -0.88 6 -0.27 0.32 0.3227533 mmu-miR-320 -0.53 -0.82 -0.82 -0.91 -1.19 -0.78 6 0.32 0.12 0.3217597 mmu-miR-467b* -0.08 -0.24 -0.06 -0.08 -0.44 -0.32 6 0.22 0.32 0.3242588 mmu-miR-18a -0.77 -0.43 -0.76 -0.81 -0.47 -0.47 6 -0.13 -0.32 0.3214306 mmu-miR-381 0.07 -0.33 -0.20 -0.01 -0.34 -0.50 6 0.29 0.32 0.3211245 mmu-miR-433* 0.07 0.08 0.10 0.25 0.48 0.30 6 -0.31 -0.21 0.3119580 mmu-let-7i 0.70 0.91 0.64 0.48 0.44 0.54 6 0.31 0.07 0.3111260 mmu-miR-151-5p -0.02 0.00 -0.11 -0.22 0.09 0.20 6 -0.15 -0.31 0.3142878 mmu-miR-882 0.01 -0.35 0.05 0.30 0.19 0.09 6 -0.31 0.03 0.3142467 mmu-miR-129-5p -1.35 -1.50 -1.15 -1.16 -1.31 -0.93 6 -0.30 -0.03 0.3017953 mmu-miR-183* -0.13 -0.10 0.05 0.26 0.25 0.13 6 -0.30 -0.03 0.3011078 mmu-miR-365 0.95 0.99 0.98 0.64 0.93 1.30 6 -0.14 -0.30 0.3028944 mmu-miR-667 -0.66 -0.45 -0.94 -1.10 -0.69 -0.76 6 0.17 -0.30 0.304700 mmu-miR-140 1.41 1.30 1.16 1.17 1.07 1.04 6 0.30 0.11 0.30

30687 mmu-miR-93 -0.12 0.03 -0.25 -0.28 -0.01 0.07 6 -0.08 -0.29 0.2910967 mmu-miR-16 -0.58 -0.32 -0.47 -0.66 -0.19 -0.35 6 -0.18 -0.29 0.2911227 mmu-miR-329 0.35 0.20 0.19 0.22 -0.02 0.00 6 0.28 0.21 0.28

Page 84: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

5740 mmu-miR-21 -0.67 -0.47 -0.74 -0.79 -0.45 -0.52 6 -0.09 -0.28 0.2842532 mmu-miR-22* -0.09 0.18 0.00 -0.16 0.20 0.20 6 -0.15 -0.28 0.2842626 mmu-miR-30b* -0.34 -0.16 -0.14 -0.20 -0.66 -0.22 6 0.19 0.27 0.2711074 mmu-miR-34c 1.02 1.16 1.09 1.10 1.45 1.27 6 -0.27 -0.27 0.2711253 mmu-miR-467a*/mmu-miR-467d*0.12 -0.06 0.11 0.03 -0.35 -0.04 6 0.23 0.27 0.2742893 mmu-miR-466a-5p 0.15 0.02 0.25 0.22 -0.05 -0.01 6 0.12 0.27 0.2717810 mmu-miR-29b* -0.50 -0.40 -0.18 -0.46 -0.15 -0.23 6 -0.26 -0.13 0.2611097 mmu-miR-382 0.28 0.25 0.23 0.23 -0.04 0.04 6 0.26 0.23 0.2642463 mmu-let-7g 0.04 0.27 0.10 0.12 0.35 0.39 6 -0.22 -0.26 0.2642831 mmu-miR-28 0.25 0.37 0.14 0.03 0.38 0.30 6 -0.03 -0.26 0.2627559 mmu-miR-744 0.56 0.44 0.52 0.62 0.19 0.44 6 0.19 0.26 0.2619585 mmu-miR-148b 0.82 0.77 0.59 0.58 0.63 0.45 6 0.26 0.05 0.2642953 mmu-miR-101b 1.09 1.16 0.97 0.80 0.93 0.81 6 0.26 0.01 0.2617280 mmu-miR-15b -0.10 -0.04 -0.18 -0.10 -0.42 -0.23 6 0.25 0.18 0.2542872 mmu-miR-138* -1.10 -0.93 -1.02 -1.40 -1.30 -1.23 6 0.25 0.06 0.2510998 mmu-miR-19b -1.68 -1.39 -1.64 -1.72 -1.34 -1.52 6 -0.11 -0.25 0.2529502 mmu-let-7b 0.42 0.43 0.19 0.41 0.02 0.33 6 0.25 0.12 0.2542803 mmu-miR-466c-5p 0.14 0.12 0.21 0.20 -0.15 0.07 6 0.17 0.24 0.2442448 mmu-miR-409-5p -0.33 -0.44 -0.50 -0.45 -0.63 -0.62 6 0.24 0.15 0.2442769 mmu-let-7b* 0.10 0.42 0.02 -0.01 0.29 0.20 6 0.01 -0.24 0.2413485 mmu-miR-10a -1.15 -1.12 -1.08 -1.29 -0.92 -0.97 6 -0.19 -0.24 0.2442917 mmu-miR-551b -0.73 -0.79 -0.74 -0.73 -0.50 -0.55 6 -0.24 -0.21 0.2417676 mmu-miR-152 0.81 0.94 0.56 0.63 0.80 0.48 6 0.24 -0.04 0.2410977 mmu-miR-183 -0.20 0.00 -0.26 -0.34 -0.01 -0.12 6 -0.03 -0.23 0.2342585 mmu-miR-297b-3p/mmu-miR-297a*/mmu-miR-297c*0.05 -0.02 0.13 0.12 -0.22 0.00 6 0.13 0.23 0.2342605 mmu-miR-503* -0.16 0.08 -0.08 -0.22 -0.36 -0.20 6 0.23 0.13 0.2311208 mmu-miR-207 -0.05 0.24 -0.04 -0.28 -0.07 -0.20 6 0.23 -0.03 0.2319602 mmu-let-7g 0.24 0.34 0.31 0.19 0.54 0.42 6 -0.19 -0.23 0.2342868 mmu-miR-762 0.40 0.15 0.25 0.47 0.66 0.35 6 -0.23 -0.15 0.2342948 mmu-miR-466f-3p/mmu-miR-466i0.08 -0.03 0.24 0.21 -0.17 0.16 6 0.03 0.23 0.2310997 mmu-miR-19a -2.26 -1.85 -2.01 -2.17 -1.79 -1.94 6 -0.19 -0.22 0.2217495 mmu-miR-697 0.38 0.46 0.25 0.01 0.32 0.38 6 0.07 -0.22 0.2242707 mmu-miR-294* -0.50 -0.64 -0.42 -0.28 -0.26 -0.43 6 -0.22 -0.01 0.2242913 mmu-miR-345-3p 1.01 0.85 0.81 0.78 0.98 1.04 6 -0.08 -0.22 0.22

Page 85: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42575 mmu-miR-24-1* 0.61 0.78 0.68 0.60 0.94 0.77 6 -0.16 -0.22 0.2242564 mmu-miR-26b 0.08 0.29 0.10 0.06 0.33 0.27 6 -0.11 -0.22 0.2229562 mmu-miR-199a-5p 1.26 1.36 1.16 1.15 1.58 1.16 6 -0.06 -0.21 0.2111030 mmu-miR-26a 0.31 0.33 0.22 0.20 0.54 0.30 6 -0.10 -0.21 0.2142790 mmu-miR-337-3p 1.11 1.02 1.19 1.11 0.89 0.98 6 0.13 0.21 0.2142841 mmu-miR-466b-5p 0.13 0.04 0.20 0.25 -0.13 0.17 6 0.07 0.21 0.2129852 mmu-miR-9* 0.79 1.00 0.97 0.88 1.20 1.01 6 -0.21 -0.18 0.2111041 mmu-miR-29c -0.55 -0.32 -0.46 -0.37 -0.12 -0.34 6 -0.21 -0.19 0.2111027 mmu-miR-23b 0.44 0.31 0.22 0.23 0.23 0.11 6 0.21 0.05 0.2127536 mmu-miR-190 0.67 0.87 0.51 0.59 0.85 0.65 6 0.02 -0.20 0.2014285 mmu-miR-487b -0.81 -0.38 -0.81 -1.04 -0.81 -0.78 6 0.20 -0.13 0.2017511 mmu-miR-713 0.08 0.23 0.04 0.01 -0.01 -0.07 6 0.20 0.06 0.2027574 mmu-miR-705 0.05 -0.07 0.03 0.12 -0.12 -0.12 6 0.11 0.20 0.2042706 mmu-miR-325 -0.23 -0.07 -0.26 -0.41 -0.37 -0.33 6 0.20 0.02 0.2042810 mmu-miR-149 0.99 0.94 0.85 0.90 0.80 0.72 6 0.20 0.12 0.205560 mmu-miR-185 -0.25 -0.24 -0.35 -0.35 -0.49 -0.39 6 0.20 0.10 0.20

42640 mmu-miR-20b -1.94 -1.45 -1.79 -1.95 -1.78 -1.57 6 -0.03 -0.20 0.2010936 mmu-miR-130b -0.84 -0.67 -0.78 -0.84 -0.58 -0.64 6 -0.14 -0.20 0.2042902 mmu-miR-185 0.19 0.31 -0.05 -0.12 0.07 0.04 6 0.20 -0.14 0.2032884 mmu-miR-342-3p 0.57 0.62 0.52 0.52 0.38 0.42 6 0.20 0.12 0.2014288 mmu-miR-503 -0.81 -1.25 -0.93 -0.54 -1.00 -0.86 6 -0.10 0.20 0.2042459 mmu-let-7e 0.20 0.13 0.37 0.48 -0.04 0.51 6 -0.07 0.19 0.1919596 mmu-miR-30d 0.74 0.50 0.79 0.78 0.78 0.40 6 0.03 0.19 0.1942670 mmu-miR-500 1.05 1.00 0.81 0.79 0.75 0.92 6 0.19 -0.04 0.1911013 mmu-miR-181a-1* 0.00 0.16 -0.04 -0.07 0.20 0.07 6 -0.06 -0.19 0.1919581 mmu-miR-100 -1.90 -1.71 -1.80 -1.92 -1.58 -1.75 6 -0.14 -0.19 0.1942713 mmu-miR-296-5p 1.05 0.93 1.16 1.11 0.71 1.19 6 0.05 0.19 0.1927740 mmu-miR-574-5p 0.24 0.04 0.15 0.12 -0.17 0.08 6 0.19 0.18 0.1911202 mmu-miR-151-3p 1.10 0.87 0.85 0.95 0.67 0.93 6 0.18 0.10 0.1842767 mmu-miR-34c* 0.71 0.76 0.71 0.60 0.51 0.60 6 0.18 0.10 0.1842499 mmu-miR-715 0.80 0.75 0.36 0.64 0.79 0.57 6 0.10 -0.18 0.1842701 mmu-miR-30c-2* -0.67 -1.03 -0.67 -0.33 -0.71 -0.63 6 -0.18 0.17 0.1811023 mmu-miR-222 -0.86 -0.96 -0.72 -0.79 -0.98 -0.89 6 0.02 0.18 0.1842880 mmu-miR-466d-5p 0.33 0.05 0.39 0.12 -0.09 0.25 6 0.11 0.18 0.18

Page 86: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17464 mmu-miR-685 -0.21 0.10 -0.05 0.05 0.03 0.21 6 -0.18 -0.12 0.1842694 mmu-miR-485* 0.18 0.17 0.29 0.30 0.04 0.20 6 0.05 0.18 0.1811022 mmu-miR-221 -0.49 -0.50 -0.26 -0.24 -0.40 -0.46 6 -0.07 0.17 0.1717425 mmu-miR-467b 0.82 0.73 0.75 0.84 0.99 0.91 6 -0.17 -0.15 0.1731026 mmu-miR-101a -0.37 -0.09 -0.11 -0.19 -0.21 -0.43 6 0.09 0.17 0.1742518 mmu-miR-465b-5p -0.01 0.36 0.07 -0.15 0.15 0.12 6 0.04 -0.17 0.1710985 mmu-miR-191 0.21 0.29 0.03 0.06 0.11 0.05 6 0.17 -0.04 0.1714272 mmu-miR-542-3p 0.30 0.26 0.11 0.11 0.07 0.14 6 0.17 0.00 0.1728213 mmu-miR-805 1.06 1.27 1.11 1.07 0.91 1.09 6 0.17 0.09 0.1711184 mmu-miR-99b 0.70 0.81 0.64 0.47 0.58 0.59 6 0.17 -0.03 0.1729872 mmu-miR-340-5p 0.21 0.32 0.12 -0.05 0.21 -0.01 6 0.17 -0.06 0.1742682 mmu-miR-25 0.02 0.01 -0.07 -0.09 0.08 0.09 6 -0.07 -0.16 0.1642961 mmu-miR-452 -1.05 -1.23 -1.04 -0.99 -0.93 -1.02 6 -0.16 -0.03 0.1610986 mmu-miR-193 0.66 0.81 0.64 0.47 0.81 0.62 6 0.02 -0.16 0.1642916 mmu-miR-471 -0.36 -0.37 -0.48 -0.46 -0.14 -0.49 6 -0.05 -0.16 0.1610995 mmu-miR-199a-3p/mmu-miR-199b1.26 1.30 1.02 1.06 1.19 1.06 6 0.16 -0.09 0.1611014 mmu-miR-214 1.14 1.00 0.85 0.86 0.95 0.88 6 0.16 -0.06 0.1642823 mmu-miR-27b* 0.61 0.67 0.45 0.35 0.61 0.51 6 0.08 -0.16 0.1642708 mmu-miR-99a 0.09 0.29 0.12 0.01 0.10 -0.04 6 0.16 0.03 0.1610925 mmu-miR-10b -1.18 -1.23 -1.17 -1.18 -1.00 -1.11 6 -0.15 -0.12 0.1516681 mmu-miR-721 -0.17 -0.51 -0.14 -0.07 -0.11 -0.26 6 -0.15 0.08 0.1517750 mmu-let-7d 0.67 0.74 0.79 0.73 0.85 0.87 6 -0.15 -0.10 0.1528966 mmu-miR-574-3p -0.08 -0.14 -0.14 -0.15 -0.38 -0.14 6 0.15 0.12 0.1519593 mmu-miR-27a -0.37 -0.20 -0.40 -0.50 -0.15 -0.44 6 0.01 -0.15 0.1519582 mmu-miR-106b -0.49 -0.31 -0.60 -0.62 -0.40 -0.52 6 0.06 -0.15 0.1531053 mmu-miR-674* 1.14 1.04 0.94 0.97 1.09 1.12 6 -0.01 -0.15 0.1527720 mmu-miR-15a -0.18 0.09 -0.21 -0.28 -0.03 -0.15 6 0.05 -0.15 0.1511205 mmu-miR-199b* 1.36 1.48 1.18 1.28 1.42 1.12 6 0.15 -0.04 0.1511231 mmu-miR-345-5p 0.46 0.56 0.62 0.44 0.69 0.63 6 -0.15 -0.12 0.1517942 mmu-miR-125a-3p 0.77 0.70 0.59 0.58 0.55 0.63 6 0.14 0.00 0.1410972 mmu-miR-181b 0.25 0.12 0.08 0.20 -0.02 0.11 6 0.14 0.10 0.1419599 mmu-miR-106a -0.46 -0.33 -0.52 -0.56 -0.44 -0.63 6 0.14 0.00 0.1417898 mmu-miR-99b* 0.35 0.38 0.32 0.35 0.18 0.29 6 0.13 0.10 0.1330787 mmu-miR-125b-5p 0.41 0.35 0.54 0.34 0.53 0.50 6 -0.13 -0.07 0.13

Page 87: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42908 mmu-miR-327 -0.35 -0.39 -0.20 -0.19 -0.38 -0.28 6 -0.04 0.13 0.1342752 mmu-miR-872* -0.27 -0.03 -0.36 -0.41 -0.30 -0.21 6 0.11 -0.13 0.1317859 mmu-miR-200b* -0.21 -0.30 -0.09 -0.12 -0.30 -0.16 6 -0.03 0.13 0.1310919 mmu-miR-103 0.35 0.49 0.49 0.31 0.49 0.56 6 -0.10 -0.13 0.1314302 mmu-miR-374 0.18 0.15 0.01 0.06 0.03 0.05 6 0.13 -0.01 0.1342528 mmu-miR-296-3p 0.04 -0.04 0.15 0.08 -0.06 0.04 6 0.01 0.12 0.1233121 mmu-miR-362-5p 0.87 0.71 0.75 0.72 0.73 0.61 6 0.12 0.07 0.1242826 mmu-miR-300* -0.06 -0.17 -0.02 0.16 -0.03 0.04 6 -0.12 0.06 0.1242802 mmu-miR-150 0.18 0.09 -0.02 0.15 0.26 0.12 6 -0.06 -0.12 0.1242462 mmu-miR-883a-5p 0.06 -0.07 -0.06 -0.13 -0.13 0.19 6 -0.03 -0.12 0.1242573 mmu-miR-1 -0.25 -0.04 -0.10 -0.23 -0.30 -0.23 6 0.12 0.09 0.1242724 mmu-miR-34b-3p -1.07 -0.91 -1.03 -1.12 -1.01 -0.90 6 -0.03 -0.12 0.1242443 mmu-miR-382* -0.50 -0.56 -0.74 -0.41 -0.59 -0.71 6 0.12 0.07 0.1242445 mmu-miR-693-5p 0.01 0.11 -0.05 -0.13 -0.04 -0.07 6 0.12 -0.03 0.126880 mmu-miR-297a 0.67 0.67 0.78 0.59 0.79 0.78 6 -0.12 -0.10 0.12

11105 mmu-miR-378 0.38 0.25 0.30 0.33 0.26 0.15 6 0.11 0.11 0.1142888 mmu-miR-875-3p 0.22 0.26 0.23 0.09 0.25 0.28 6 -0.03 -0.11 0.1117506 mmu-miR-24 0.51 0.49 0.57 0.55 0.71 0.51 6 -0.11 -0.05 0.1133116 mmu-miR-770-3p -0.15 -0.52 -0.32 -0.14 -0.34 -0.34 6 0.00 0.11 0.1142920 mmu-miR-29a* -0.30 0.04 -0.03 -0.08 -0.02 -0.02 6 -0.11 -0.03 0.1117388 mmu-miR-669a 0.32 0.24 0.36 0.35 0.20 0.30 6 0.03 0.11 0.1142783 mmu-miR-197 -0.58 -0.49 -0.57 -0.61 -0.72 -0.57 6 0.11 0.05 0.1142730 mmu-miR-423-3p -0.66 -0.82 -0.75 -0.67 -0.95 -0.69 6 0.08 0.11 0.1117610 mmu-miR-677 1.18 1.15 1.13 0.94 1.16 1.13 6 0.02 -0.10 0.1013147 mmu-miR-96 0.52 0.60 0.56 0.57 0.78 0.55 6 -0.10 -0.10 0.1033401 mmu-let-7f 0.02 0.09 0.04 0.09 0.16 0.16 6 -0.10 -0.10 0.1011254 mmu-miR-468 0.08 0.16 0.19 0.20 0.03 0.16 6 0.03 0.10 0.1010914 mmu-let-7d 0.09 0.25 0.14 0.20 0.12 0.02 6 0.10 0.10 0.1013148 mmu-miR-195 -0.33 -0.36 -0.45 -0.57 -0.42 -0.40 6 0.06 -0.10 0.109938 mmu-let-7i 0.66 0.60 0.64 0.65 0.55 0.54 6 0.09 0.10 0.10

42698 mmu-miR-484 0.63 0.59 0.53 0.77 0.59 0.51 6 0.06 0.10 0.1030831 mmu-miR-804 0.21 0.45 0.22 0.15 0.27 0.20 6 0.10 -0.05 0.1042808 mmu-miR-874 -1.05 -1.23 -1.05 -1.19 -0.92 -1.17 6 -0.10 -0.08 0.1027572 mmu-miR-298 1.12 1.02 1.05 1.00 0.91 1.03 6 0.10 0.05 0.10

Page 88: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

4040 mmu-miR-9 1.06 1.11 1.16 1.12 1.17 1.19 6 -0.10 -0.04 0.1011048 mmu-miR-30a 0.22 0.13 0.08 0.04 0.23 0.07 6 0.02 -0.09 0.0942739 mmu-miR-339-5p -0.94 -0.86 -0.94 -1.04 -0.84 -0.95 6 0.00 -0.09 0.0917608 mmu-miR-425 0.30 0.38 0.14 0.23 0.35 0.20 6 0.06 -0.09 0.0917624 mmu-miR-532-5p 0.62 0.51 0.42 0.41 0.57 0.38 6 0.09 -0.06 0.0917876 mmu-miR-125b-3p 0.79 0.79 0.91 0.59 0.80 0.87 6 -0.05 -0.09 0.0913143 mmu-miR-301a 0.88 1.12 0.89 0.90 0.93 0.89 6 0.09 -0.02 0.0917888 mmu-let-7a*/mmu-let-7c-2* 0.45 0.44 0.35 0.23 0.46 0.30 6 0.07 -0.09 0.0942471 mmu-miR-290-5p -0.41 -0.29 -0.42 -0.48 -0.32 -0.55 6 0.08 -0.01 0.0811018 mmu-miR-218 0.47 0.36 0.43 0.42 0.58 0.42 6 -0.08 -0.08 0.0842751 mmu-miR-720 -0.75 -0.63 -0.64 -0.76 -0.78 -0.77 6 0.08 0.07 0.0813175 mmu-miR-27b 0.20 0.30 0.22 0.07 0.30 0.05 6 0.08 -0.03 0.0830768 mmu-miR-674 1.12 1.12 0.97 1.04 1.04 1.05 6 0.08 -0.04 0.0842477 mmu-miR-324-5p 0.75 0.73 0.73 0.61 0.81 0.68 6 0.00 -0.07 0.0742923 mmu-miR-30c 0.04 0.08 -0.07 -0.02 0.13 -0.08 6 0.03 -0.07 0.0719004 mmu-let-7c 0.51 0.43 0.55 0.28 0.41 0.57 6 -0.02 -0.07 0.0710975 mmu-miR-182 0.72 0.86 0.65 0.64 0.79 0.64 6 0.07 -0.07 0.0710138 mmu-miR-130a 0.49 0.56 0.40 0.41 0.54 0.42 6 0.05 -0.07 0.0711224 mmu-miR-30e* 0.73 0.77 0.64 0.64 0.78 0.64 6 0.04 -0.07 0.0742887 mmu-miR-331-3p 0.41 0.35 0.37 0.33 0.31 0.31 6 0.07 0.04 0.0742744 mmu-miR-23a -0.05 -0.07 -0.02 -0.01 -0.03 -0.14 6 0.02 0.07 0.0711234 mmu-miR-350 0.99 1.10 0.96 0.95 1.11 0.93 6 0.02 -0.07 0.0713140 mmu-miR-138 -3.06 -3.07 -3.12 -3.19 -3.05 -3.21 6 0.06 -0.02 0.0642915 mmu-miR-466b-3-3p 0.22 0.15 0.36 0.22 0.26 0.19 6 -0.04 0.06 0.0610923 mmu-miR-107 0.30 0.42 0.25 0.24 0.27 0.33 6 0.06 -0.05 0.0617565 mmu-miR-30b -0.07 -0.10 -0.18 -0.21 -0.07 -0.20 6 0.05 -0.06 0.0642861 mmu-miR-466d-3p 0.32 0.27 0.35 0.26 0.22 0.28 6 0.05 0.06 0.0617825 mmu-miR-338-5p 0.56 0.55 0.65 0.53 0.59 0.64 6 -0.06 -0.02 0.0642950 mmu-miR-24-2* 0.85 1.05 1.00 0.84 1.09 0.85 6 -0.02 -0.05 0.0510962 mmu-miR-154 0.14 0.22 0.10 0.08 0.20 0.06 6 0.05 -0.04 0.0527565 mmu-miR-423-5p -2.18 -2.22 -2.25 -2.21 -2.33 -2.18 6 0.05 0.02 0.0542817 mmu-miR-770-5p -0.46 -0.54 -0.47 -0.38 -0.57 -0.37 6 -0.02 0.05 0.0542731 mmu-miR-138 -2.77 -2.75 -2.77 -2.78 -2.81 -2.81 6 0.05 0.03 0.0529153 mmu-miR-34b-5p 0.93 1.09 0.97 1.09 1.12 0.99 6 -0.04 -0.02 0.04

Page 89: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

19600 mmu-miR-17* 0.07 0.01 0.03 -0.01 0.05 0.06 6 -0.01 -0.04 0.0427672 mmu-miR-615-3p 0.24 0.39 0.27 0.22 0.27 0.27 6 0.04 -0.02 0.0442474 mmu-miR-362-3p 0.25 0.33 0.29 0.30 0.35 0.31 6 -0.04 -0.04 0.0411039 mmu-miR-29a -0.73 -0.61 -0.68 -0.53 -0.50 -0.76 6 -0.04 0.02 0.0428191 mmu-miR-30e -0.09 0.03 -0.10 -0.03 0.07 -0.12 6 -0.01 -0.04 0.0442827 mmu-miR-652 0.64 0.62 0.64 0.59 0.60 0.70 6 -0.02 -0.04 0.0442978 mmu-miR-466a-3p/mmu-miR-466b-3p/mmu-miR-466c-3p/mmu-miR-466e-3p0.37 0.36 0.41 0.39 0.23 0.50 6 0.00 0.03 0.0318739 mmu-miR-186 0.18 0.27 0.17 0.19 0.22 0.20 6 0.02 -0.03 0.0342894 mmu-miR-466e-5p 0.09 0.15 0.20 0.10 0.08 0.22 6 -0.03 0.00 0.0342505 mmu-let-7d* 0.54 0.35 0.47 0.45 0.45 0.42 6 0.01 0.02 0.0217718 mmu-miR-92b -1.26 -1.21 -1.29 -1.24 -1.31 -1.21 6 0.02 -0.01 0.0210928 mmu-miR-125a-5p 0.38 0.22 0.30 0.37 0.35 0.27 6 -0.01 0.02 0.0242538 mmu-miR-196a* -1.33 -1.07 -1.18 -1.36 NA -1.22 542693 mmu-miR-326 0.35 NA 0.69 0.68 0.72 0.74 542574 mmu-miR-467e 0.09 -0.02 0.15 0.04 -0.05 NA 517303 mmu-miR-669c -0.14 -0.01 0.05 0.07 -0.24 NA 517517 mmu-miR-688 -0.88 -0.97 -0.63 NA -0.70 -0.67 517422 mmu-miR-695 -0.36 -0.53 NA -0.19 -0.14 -0.22 542494 mmu-miR-712* 0.87 NA 0.43 0.66 0.61 0.51 529650 mmu-miR-714 -0.06 -0.18 NA 0.11 0.29 0.23 525117 mmu-miR-742 -0.15 -0.05 -0.16 NA -0.11 -0.12 517854 mmu-miR-106b* 0.17 0.14 0.03 -0.01 NA NA 44610 mmu-miR-126-3p 0.10 0.18 0.04 0.06 NA NA 4

31867 mmu-miR-145* 0.12 NA 0.17 0.14 0.25 NA 410988 mmu-miR-194 0.53 NA 0.52 0.45 0.52 NA 411024 mmu-miR-223 NA -0.50 NA -0.67 -0.51 -0.76 442636 mmu-miR-28* 0.74 0.66 0.67 0.55 NA NA 442945 mmu-miR-297c 0.37 0.22 0.44 0.39 NA NA 413150 mmu-miR-322 0.42 0.44 0.32 0.34 NA NA 411093 mmu-miR-379 0.89 0.82 0.81 0.68 NA NA 414290 mmu-miR-541 0.94 0.87 0.80 0.95 NA NA 442691 mmu-miR-699 0.54 0.66 0.50 0.53 NA NA 442687 mmu-miR-883b-5p -0.26 -0.35 NA -0.29 -0.25 NA 442668 mmu-let-7c-1* 0.17 NA 0.25 0.12 NA NA 3

Page 90: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42768 mmu-let-7f* 0.04 0.23 0.09 NA NA NA 342829 mmu-miR-127 0.80 NA 0.84 0.82 NA NA 333902 mmu-miR-128 0.17 0.23 0.19 NA NA NA 310943 mmu-miR-136 0.62 NA 0.49 0.36 NA NA 310952 mmu-miR-146a 0.43 NA 0.25 0.32 NA NA 317411 mmu-miR-147 0.43 NA 0.37 0.32 NA NA 317729 mmu-miR-193b 0.56 NA 0.16 0.26 NA NA 35730 mmu-miR-208a NA -0.47 NA NA -0.21 -0.48 3

11229 mmu-miR-341 NA -0.59 NA -0.38 NA -0.49 311235 mmu-miR-351 -0.13 NA -0.07 -0.06 NA NA 317482 mmu-miR-411 0.56 NA 0.54 0.41 NA NA 342784 mmu-miR-411* 0.89 NA 0.99 0.85 NA NA 317474 mmu-miR-421 0.47 0.46 0.36 NA NA NA 318847 mmu-miR-450a-5p 0.74 NA 0.48 0.56 NA NA 317347 mmu-miR-708* 0.70 NA 0.79 NA 0.45 NA 330033 mmu-miR-877 0.04 NA 0.14 0.11 NA NA 342587 mmu-miR-881* 0.13 NA 0.14 0.14 NA NA 342835 mmu-miR-16* 0.57 NA 0.50 NA NA NA 242797 mmu-miR-210 NA -0.80 NA NA -0.48 NA 231388 mmu-miR-291a-5p -0.07 NA NA -0.10 NA NA 242703 mmu-miR-490 -0.20 NA NA -0.25 NA NA 217465 mmu-miR-678 NA -0.50 NA NA -0.74 NA 210955 mmu-miR-148a 0.34 NA NA NA NA NA 127558 mmu-miR-155 0.36 NA NA NA NA NA 113127 mmu-miR-200a* NA NA NA 0.03 NA NA 111005 mmu-miR-204 0.61 NA NA NA NA NA 111246 mmu-miR-434-3p 0.36 NA NA NA NA NA 111256 mmu-miR-470 NA NA NA -0.02 NA NA 142966 mmu-miR-501-5p 0.45 NA NA NA NA NA 142846 mmu-miR-696 NA NA NA NA 0.28 NA 142778 mmu-let-7g* NA NA NA NA NA NA 042534 mmu-let-7i* NA NA NA NA NA NA 017935 mmu-miR-101a* NA NA NA NA NA NA 042851 mmu-miR-105 NA NA NA NA NA NA 0

Page 91: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

28019 mmu-miR-10a* NA NA NA NA NA NA 042969 mmu-miR-10b* NA NA NA NA NA NA 019583 mmu-miR-122 NA NA NA NA NA NA 014328 mmu-miR-124 NA NA NA NA NA NA 042898 mmu-miR-124* NA NA NA NA NA NA 042779 mmu-miR-125b* NA NA NA NA NA NA 033596 mmu-miR-126-5p NA NA NA NA NA NA 042692 mmu-miR-127* NA NA NA NA NA NA 042787 mmu-miR-130b* NA NA NA NA NA NA 010937 mmu-miR-132 NA NA NA NA NA NA 032809 mmu-miR-133a NA NA NA NA NA NA 017653 mmu-miR-133a* NA NA NA NA NA NA 030755 mmu-miR-133b NA NA NA NA NA NA 042942 mmu-miR-134 NA NA NA NA NA NA 042839 mmu-miR-135a NA NA NA NA NA NA 042609 mmu-miR-135a* NA NA NA NA NA NA 010942 mmu-miR-135b NA NA NA NA NA NA 042686 mmu-miR-136* NA NA NA NA NA NA 010944 mmu-miR-137 NA NA NA NA NA NA 042451 mmu-miR-139-3p NA NA NA NA NA NA 042689 mmu-miR-139-5p NA NA NA NA NA NA 027542 mmu-miR-139-5p NA NA NA NA NA NA 010946 mmu-miR-141 NA NA NA NA NA NA 042452 mmu-miR-141* NA NA NA NA NA NA 010947 mmu-miR-142-3p NA NA NA NA NA NA 019015 mmu-miR-142-5p NA NA NA NA NA NA 029802 mmu-miR-144 NA NA NA NA NA NA 042849 mmu-miR-146b* NA NA NA NA NA NA 017872 mmu-miR-148a* NA NA NA NA NA NA 042850 mmu-miR-150* NA NA NA NA NA NA 042599 mmu-miR-153 NA NA NA NA NA NA 042572 mmu-miR-154* NA NA NA NA NA NA 042697 mmu-miR-15a* NA NA NA NA NA NA 017902 mmu-miR-15b* NA NA NA NA NA NA 0

Page 92: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42469 mmu-miR-181a-2* NA NA NA NA NA NA 042496 mmu-miR-181c NA NA NA NA NA NA 042840 mmu-miR-181d NA NA NA NA NA NA 042631 mmu-miR-186* NA NA NA NA NA NA 027539 mmu-miR-187 NA NA NA NA NA NA 042786 mmu-miR-188-3p NA NA NA NA NA NA 042620 mmu-miR-188-5p NA NA NA NA NA NA 013178 mmu-miR-18a* NA NA NA NA NA NA 042877 mmu-miR-18b NA NA NA NA NA NA 032731 mmu-miR-190b NA NA NA NA NA NA 042748 mmu-miR-191* NA NA NA NA NA NA 017732 mmu-miR-192 NA NA NA NA NA NA 042579 mmu-miR-193* NA NA NA NA NA NA 010990 mmu-miR-196a NA NA NA NA NA NA 010991 mmu-miR-196b NA NA NA NA NA NA 042549 mmu-miR-19a* NA NA NA NA NA NA 011000 mmu-miR-200a NA NA NA NA NA NA 018900 mmu-miR-200b NA NA NA NA NA NA 017427 mmu-miR-200c NA NA NA NA NA NA 017851 mmu-miR-200c* NA NA NA NA NA NA 013176 mmu-miR-201 NA NA NA NA NA NA 011207 mmu-miR-202-3p NA NA NA NA NA NA 042507 mmu-miR-202-5p NA NA NA NA NA NA 011004 mmu-miR-203 NA NA NA NA NA NA 042919 mmu-miR-203* NA NA NA NA NA NA 042655 mmu-miR-205 NA NA NA NA NA NA 011007 mmu-miR-206 NA NA NA NA NA NA 042555 mmu-miR-208b NA NA NA NA NA NA 042876 mmu-miR-20a* NA NA NA NA NA NA 014297 mmu-miR-20b* NA NA NA NA NA NA 019601 mmu-miR-211 NA NA NA NA NA NA 042627 mmu-miR-212 NA NA NA NA NA NA 042560 mmu-miR-214* NA NA NA NA NA NA 011210 mmu-miR-215 NA NA NA NA NA NA 0

Page 93: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42553 mmu-miR-216a NA NA NA NA NA NA 017849 mmu-miR-216b NA NA NA NA NA NA 019016 mmu-miR-217 NA NA NA NA NA NA 042931 mmu-miR-218-1* NA NA NA NA NA NA 042815 mmu-miR-218-2* NA NA NA NA NA NA 042509 mmu-miR-219 NA NA NA NA NA NA 042947 mmu-miR-220 NA NA NA NA NA NA 042566 mmu-miR-224 NA NA NA NA NA NA 042523 mmu-miR-26b* NA NA NA NA NA NA 017818 mmu-miR-27a* NA NA NA NA NA NA 042595 mmu-miR-291a-3p NA NA NA NA NA NA 042444 mmu-miR-291b-3p NA NA NA NA NA NA 028450 mmu-miR-291b-5p NA NA NA NA NA NA 011215 mmu-miR-292-3p NA NA NA NA NA NA 027571 mmu-miR-292-5p NA NA NA NA NA NA 011217 mmu-miR-293 NA NA NA NA NA NA 042449 mmu-miR-293* NA NA NA NA NA NA 011218 mmu-miR-294 NA NA NA NA NA NA 013149 mmu-miR-295 NA NA NA NA NA NA 042821 mmu-miR-295* NA NA NA NA NA NA 017313 mmu-miR-297b-5p NA NA NA NA NA NA 042625 mmu-miR-299 NA NA NA NA NA NA 014300 mmu-miR-29c* NA NA NA NA NA NA 011221 mmu-miR-300 NA NA NA NA NA NA 042664 mmu-miR-301b NA NA NA NA NA NA 011222 mmu-miR-302a NA NA NA NA NA NA 042830 mmu-miR-302a* NA NA NA NA NA NA 011043 mmu-miR-302b NA NA NA NA NA NA 014189 mmu-miR-302b* NA NA NA NA NA NA 011044 mmu-miR-302c NA NA NA NA NA NA 042836 mmu-miR-302c* NA NA NA NA NA NA 027838 mmu-miR-302d NA NA NA NA NA NA 019595 mmu-miR-30a* NA NA NA NA NA NA 042702 mmu-miR-30c-1* NA NA NA NA NA NA 0

Page 94: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

11225 mmu-miR-322* NA NA NA NA NA NA 042957 mmu-miR-323-3p NA NA NA NA NA NA 042457 mmu-miR-323-5p NA NA NA NA NA NA 042719 mmu-miR-324-3p NA NA NA NA NA NA 011226 mmu-miR-325* NA NA NA NA NA NA 042675 mmu-miR-328 NA NA NA NA NA NA 042924 mmu-miR-33* NA NA NA NA NA NA 042875 mmu-miR-330 NA NA NA NA NA NA 042606 mmu-miR-330* NA NA NA NA NA NA 017866 mmu-miR-331-5p NA NA NA NA NA NA 017929 mmu-miR-335-3p NA NA NA NA NA NA 042867 mmu-miR-337-5p NA NA NA NA NA NA 042592 mmu-miR-338-3p NA NA NA NA NA NA 042765 mmu-miR-339-3p NA NA NA NA NA NA 042738 mmu-miR-340-3p NA NA NA NA NA NA 042576 mmu-miR-342-5p NA NA NA NA NA NA 042871 mmu-miR-343 NA NA NA NA NA NA 011230 mmu-miR-344 NA NA NA NA NA NA 042604 mmu-miR-346 NA NA NA NA NA NA 011077 mmu-miR-363 NA NA NA NA NA NA 014280 mmu-miR-367 NA NA NA NA NA NA 029529 mmu-miR-369-3p NA NA NA NA NA NA 013145 mmu-miR-369-5p NA NA NA NA NA NA 042967 mmu-miR-370 NA NA NA NA NA NA 028346 mmu-miR-374* NA NA NA NA NA NA 042498 mmu-miR-375 NA NA NA NA NA NA 014303 mmu-miR-376a NA NA NA NA NA NA 014268 mmu-miR-376a* NA NA NA NA NA NA 014304 mmu-miR-376b NA NA NA NA NA NA 014305 mmu-miR-376b* NA NA NA NA NA NA 030681 mmu-miR-376c NA NA NA NA NA NA 042453 mmu-miR-376c* NA NA NA NA NA NA 011091 mmu-miR-377 NA NA NA NA NA NA 011092 mmu-miR-378* NA NA NA NA NA NA 0

Page 95: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

11238 mmu-miR-380-3p NA NA NA NA NA NA 028161 mmu-miR-380-5p NA NA NA NA NA NA 011239 mmu-miR-383 NA NA NA NA NA NA 030973 mmu-miR-384-3p NA NA NA NA NA NA 042844 mmu-miR-384-5p NA NA NA NA NA NA 011240 mmu-miR-409-3p NA NA NA NA NA NA 042925 mmu-miR-409-5p NA NA NA NA NA NA 011102 mmu-miR-410 NA NA NA NA NA NA 042764 mmu-miR-412 NA NA NA NA NA NA 011108 mmu-miR-425* NA NA NA NA NA NA 017478 mmu-miR-429 NA NA NA NA NA NA 042612 mmu-miR-431 NA NA NA NA NA NA 042674 mmu-miR-431* NA NA NA NA NA NA 042853 mmu-miR-433 NA NA NA NA NA NA 011247 mmu-miR-434-5p NA NA NA NA NA NA 011113 mmu-miR-448 NA NA NA NA NA NA 011114 mmu-miR-449a NA NA NA NA NA NA 042637 mmu-miR-449b NA NA NA NA NA NA 017438 mmu-miR-449c NA NA NA NA NA NA 042922 mmu-miR-450a-3p NA NA NA NA NA NA 017548 mmu-miR-450b-3p NA NA NA NA NA NA 028769 mmu-miR-450b-5p NA NA NA NA NA NA 042866 mmu-miR-451 NA NA NA NA NA NA 042594 mmu-miR-453 NA NA NA NA NA NA 013179 mmu-miR-455* NA NA NA NA NA NA 042565 mmu-miR-463 NA NA NA NA NA NA 011249 mmu-miR-463* NA NA NA NA NA NA 011250 mmu-miR-464 NA NA NA NA NA NA 023524 mmu-miR-465a-3p/mmu-miR-465b-3p/mmu-miR-465c-3pNA NA NA NA NA NA 011251 mmu-miR-465a-5p NA NA NA NA NA NA 042519 mmu-miR-465c-5p NA NA NA NA NA NA 042582 mmu-miR-466f-5p/mmu-miR-466fNA NA NA NA NA NA 042822 mmu-miR-466g NA NA NA NA NA NA 042488 mmu-miR-466h NA NA NA NA NA NA 0

Page 96: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42725 mmu-miR-467a NA NA NA NA NA NA 042489 mmu-miR-467c NA NA NA NA NA NA 042611 mmu-miR-467d NA NA NA NA NA NA 011255 mmu-miR-469 NA NA NA NA NA NA 042911 mmu-miR-470* NA NA NA NA NA NA 042480 mmu-miR-485 NA NA NA NA NA NA 032946 mmu-miR-486 NA NA NA NA NA NA 017316 mmu-miR-488 NA NA NA NA NA NA 017743 mmu-miR-488* NA NA NA NA NA NA 042796 mmu-miR-489 NA NA NA NA NA NA 011123 mmu-miR-491 NA NA NA NA NA NA 042937 mmu-miR-493 NA NA NA NA NA NA 042676 mmu-miR-495 NA NA NA NA NA NA 011128 mmu-miR-496 NA NA NA NA NA NA 042847 mmu-miR-497 NA NA NA NA NA NA 014313 mmu-miR-499 NA NA NA NA NA NA 042578 mmu-miR-501-3p NA NA NA NA NA NA 028480 mmu-miR-504 NA NA NA NA NA NA 017691 mmu-miR-505 NA NA NA NA NA NA 042639 mmu-miR-509-3p NA NA NA NA NA NA 042714 mmu-miR-509-5p NA NA NA NA NA NA 042546 mmu-miR-511 NA NA NA NA NA NA 042732 mmu-miR-532-3p NA NA NA NA NA NA 014271 mmu-miR-539 NA NA NA NA NA NA 014289 mmu-miR-540-3p NA NA NA NA NA NA 042601 mmu-miR-540-5p NA NA NA NA NA NA 042811 mmu-miR-542-5p NA NA NA NA NA NA 042470 mmu-miR-543 NA NA NA NA NA NA 042799 mmu-miR-544 NA NA NA NA NA NA 013784 mmu-miR-547 NA NA NA NA NA NA 042977 mmu-miR-568 NA NA NA NA NA NA 042992 mmu-miR-568 NA NA NA NA NA NA 042995 mmu-miR-568 NA NA NA NA NA NA 042800 mmu-miR-582-5p NA NA NA NA NA NA 0

Page 97: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42567 mmu-miR-590-3p NA NA NA NA NA NA 031809 mmu-miR-590-5p NA NA NA NA NA NA 017312 mmu-miR-592 NA NA NA NA NA NA 042456 mmu-miR-598 NA NA NA NA NA NA 042690 mmu-miR-615-5p NA NA NA NA NA NA 042607 mmu-miR-653 NA NA NA NA NA NA 021498 mmu-miR-654-3p NA NA NA NA NA NA 042842 mmu-miR-654-5p NA NA NA NA NA NA 042536 mmu-miR-666-3p NA NA NA NA NA NA 028624 mmu-miR-666-5p NA NA NA NA NA NA 017540 mmu-miR-669b NA NA NA NA NA NA 028979 mmu-miR-670 NA NA NA NA NA NA 042525 mmu-miR-671-3p NA NA NA NA NA NA 042726 mmu-miR-671-5p NA NA NA NA NA NA 033177 mmu-miR-672 NA NA NA NA NA NA 042927 mmu-miR-673-3p NA NA NA NA NA NA 028054 mmu-miR-673-5p NA NA NA NA NA NA 028456 mmu-miR-675-3p NA NA NA NA NA NA 033163 mmu-miR-676 NA NA NA NA NA NA 028505 mmu-miR-676* NA NA NA NA NA NA 017433 mmu-miR-679 NA NA NA NA NA NA 017446 mmu-miR-680 NA NA NA NA NA NA 042658 mmu-miR-681 NA NA NA NA NA NA 017525 mmu-miR-682 NA NA NA NA NA NA 017304 mmu-miR-683 NA NA NA NA NA NA 017638 mmu-miR-684 NA NA NA NA NA NA 017665 mmu-miR-686 NA NA NA NA NA NA 017618 mmu-miR-687 NA NA NA NA NA NA 042680 mmu-miR-689 NA NA NA NA NA NA 017639 mmu-miR-692 NA NA NA NA NA NA 031015 mmu-miR-693-3p NA NA NA NA NA NA 017513 mmu-miR-694 NA NA NA NA NA NA 017378 mmu-miR-698 NA NA NA NA NA NA 042816 mmu-miR-700 NA NA NA NA NA NA 0

Page 98: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17621 mmu-miR-701 NA NA NA NA NA NA 042733 mmu-miR-702 NA NA NA NA NA NA 032707 mmu-miR-703 NA NA NA NA NA NA 017528 mmu-miR-704 NA NA NA NA NA NA 042805 mmu-miR-707 NA NA NA NA NA NA 017527 mmu-miR-717 NA NA NA NA NA NA 042975 mmu-miR-718 NA NA NA NA NA NA 017278 mmu-miR-719 NA NA NA NA NA NA 028309 mmu-miR-741 NA NA NA NA NA NA 042712 mmu-miR-742* NA NA NA NA NA NA 025126 mmu-miR-743a NA NA NA NA NA NA 042863 mmu-miR-743b-3p NA NA NA NA NA NA 042709 mmu-miR-743b-5p NA NA NA NA NA NA 042970 mmu-miR-744* NA NA NA NA NA NA 028759 mmu-miR-758 NA NA NA NA NA NA 023767 mmu-miR-759 NA NA NA NA NA NA 042852 mmu-miR-760 NA NA NA NA NA NA 032608 mmu-miR-761 NA NA NA NA NA NA 027773 mmu-miR-764-3p NA NA NA NA NA NA 029779 mmu-miR-764-5p NA NA NA NA NA NA 011277 mmu-miR-7a* NA NA NA NA NA NA 04390 mmu-miR-7b NA NA NA NA NA NA 0

30442 mmu-miR-802 NA NA NA NA NA NA 042569 mmu-miR-871 NA NA NA NA NA NA 028250 mmu-miR-872 NA NA NA NA NA NA 031436 mmu-miR-873 NA NA NA NA NA NA 017850 mmu-miR-875-5p NA NA NA NA NA NA 042678 mmu-miR-876-3p NA NA NA NA NA NA 042813 mmu-miR-876-5p NA NA NA NA NA NA 042771 mmu-miR-877* NA NA NA NA NA NA 042646 mmu-miR-878-3p NA NA NA NA NA NA 042809 mmu-miR-878-5p NA NA NA NA NA NA 042886 mmu-miR-879 NA NA NA NA NA NA 042621 mmu-miR-879* NA NA NA NA NA NA 0

Page 99: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42651 mmu-miR-880 NA NA NA NA NA NA 042895 mmu-miR-881 NA NA NA NA NA NA 042884 mmu-miR-883a-3p NA NA NA NA NA NA 042883 mmu-miR-883b-3p NA NA NA NA NA NA 042728 mmu-miR-92a NA NA NA NA NA NA 042879 mmu-miR-92a* NA NA NA NA NA NA 042747 mmu-miR-93* NA NA NA NA NA NA 017287 mghv-miR-M1-1 NA NA NA NA NA NA42464 mghv-miR-M1-2 0.74 0.55 0.49 0.60 0.89 0.7617537 mghv-miR-M1-3 NA -0.48 -0.16 0.05 0.03 0.0717291 mghv-miR-M1-4 -1.14 -1.28 -1.10 -0.97 -0.94 -1.0317352 mghv-miR-M1-5 NA NA NA NA NA NA17273 mghv-miR-M1-6 NA NA NA NA NA NA17290 mghv-miR-M1-7-3p -0.14 -0.25 -0.20 0.27 -0.18 NA17604 mghv-miR-M1-7-5p -0.55 -0.48 -0.31 -0.58 -0.20 -0.3017431 mghv-miR-M1-8 0.85 0.81 0.93 0.70 0.71 1.0217620 mghv-miR-M1-9 NA NA NA NA NA NA14258 hsa_negative_control_1 NA NA NA NA NA NA14259 hsa_negative_control_2 NA NA NA NA NA NA14260 hsa_negative_control_3 NA NA NA NA NA NA14266 hsa_negative_control_4 NA NA NA NA NA NA10898 hsa_negative_control_5 0.34 0.46 0.31 0.11 0.52 0.3110901 hsa_negative_control_6 NA NA NA NA NA NA10902 hsa_negative_control_7 NA NA NA NA NA NA10903 hsa_negative_control_8 NA NA NA NA NA NA19011 hsa_SNORD10 -3.61 -3.53 -3.44 -3.59 -3.42 -3.3519005 hsa_SNORD118 -2.79 -1.83 -2.65 -2.88 -2.80 -2.5019606 hsa_SNORD12 0.03 -0.11 0.00 0.19 -0.02 0.1119603 hsa_SNORD13 -1.46 -1.53 -1.53 -1.44 -1.53 -1.4219013 hsa_SNORD14B 0.47 0.37 0.28 0.36 0.28 0.3219607 hsa_SNORD15A NA NA NA NA NA NA19008 hsa_SNORD2 -0.56 -0.56 -0.47 -0.49 -0.49 -0.3719007 hsa_SNORD3@ -3.11 -3.53 -3.25 -3.12 -3.30 -3.3819604 hsa_SNORD4A -3.84 NA NA -3.69 -3.53 -3.55

Page 100: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

19605 hsa_SNORD6 -3.28 -3.25 -3.30 -3.26 -3.06 -3.2411278 U6-snRNA-1 0.12 -0.10 -0.23 -0.31 -0.75 -0.6011279 U6-snRNA-2 -0.64 -0.58 -0.64 -0.66 -1.10 -0.7317306 0 NA NA NA NA NA NA17470 0 NA NA NA NA NA NA17570 0 NA NA NA NA NA NA17660 0 NA NA NA NA -0.71 NA17883 0 NA NA NA NA NA NA19591 0 0.37 NA NA NA NA NA10987 0 -2.18 -2.25 -2.35 -2.43 -2.36 -2.3811111 0 NA NA NA NA NA NA11166 0 NA NA NA NA NA NA13170 0 NA NA NA NA NA NA17327 0 -0.24 NA NA NA NA NA17490 0 NA NA NA NA NA NA17578 0 NA NA NA NA NA NA17893 0 0.05 0.23 0.02 0.11 0.24 NA11175 0 -0.61 -0.39 -0.59 -0.72 -0.48 -0.5217338 0 NA NA NA NA NA NA17499 0 NA NA NA NA NA NA17593 0 NA NA NA NA NA NA17817 0 NA NA NA NA NA NA11063 0 NA NA NA NA NA NA11135 0 -1.21 -1.37 -1.19 -0.96 -1.21 -1.1817354 0 -0.42 -0.28 -0.12 0.11 0.09 0.2017509 0 NA NA NA NA NA NA17830 0 -0.88 -0.81 -0.85 -0.94 -0.79 NA17928 0 NA NA NA NA NA NA28047 0 NA NA NA NA NA NA30592 0 NA NA NA NA NA NA33718 0 NA NA NA NA NA NA42486 0 -0.18 -0.04 0.11 -0.14 0.22 0.1942571 0 0.28 0.32 0.11 0.13 0.34 0.5042616 0 NA NA NA NA NA NA

Page 101: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42666 0 NA NA NA NA NA NA42717 0 NA NA NA NA NA NA42760 0 NA NA NA NA -0.15 NA42807 0 -0.52 -0.89 -0.37 -0.29 -0.09 -0.2828251 0 NA NA NA NA NA NA42442 0 -0.53 -0.78 -0.47 -0.37 -0.20 -0.4242495 0 NA NA NA NA NA NA42539 0 -0.15 0.00 -0.18 -0.36 -0.05 -0.2742622 0 NA NA NA NA NA NA42673 0 NA NA NA NA NA NA42812 0 NA NA NA NA NA NA42870 0 NA NA NA NA NA NA28520 0 NA NA NA NA NA NA31057 0 -0.66 -0.76 -0.58 -0.74 -0.77 -0.7742501 0 0.23 NA 0.13 0.39 NA NA42543 0 NA NA NA NA NA NA42581 0 -0.06 -0.48 -0.11 -0.19 -0.36 -0.2942628 0 NA NA NA NA NA NA42679 0 -0.43 -0.41 -0.22 -0.10 -0.24 -0.1042729 0 NA NA NA NA NA NA42773 0 0.74 0.65 0.28 0.52 0.65 0.5942820 0 0.62 0.54 0.76 0.75 0.30 0.7328889 0 NA NA NA NA NA NA31517 0 NA NA NA NA NA NA42458 0 NA NA NA NA NA NA42506 0 NA NA NA NA NA NA42548 0 NA -0.61 NA NA -0.57 NA42589 0 -0.22 -0.39 -0.03 0.08 0.53 -0.0942634 0 NA NA NA NA NA NA42735 0 -0.60 -0.76 -0.32 -0.08 0.09 -0.2142777 0 NA NA NA NA NA NA42890 0 NA NA NA NA NA NA43009 0 0.23 0.20 0.18 0.18 0.18 0.2528431 0 -2.50 -2.66 -2.25 -2.13 -1.80 -2.03

Page 102: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42929 0 -0.58 -1.05 -0.53 -0.36 -0.36 -0.6842976 0 NA NA NA NA NA NA43012 0 0.20 0.25 0.22 0.21 0.31 0.4442492 0 NA NA NA NA NA NA42935 0 NA NA NA NA NA NA43017 0 -0.01 0.21 0.11 0.02 0.43 0.3342530 0 -0.38 -0.22 -0.63 -0.44 -0.25 -0.2742943 0 0.07 0.09 0.01 0.19 0.00 0.1042721 0 NA NA NA NA NA NA42677 0 NA NA NA NA NA NA13367 0 NA NA NA NA NA NA28876 0 NA NA NA NA NA NA11265 0 -0.11 0.31 0.11 0.05 NA NA42741 0 NA NA NA NA NA NA13388 0 NA NA NA NA NA NA29056 0 NA NA NA NA NA NA11273 0 0.67 0.94 0.83 0.65 1.04 1.0242881 0 NA NA NA NA NA NA13421 0 NA NA NA NA NA NA14295 0 NA NA NA NA NA NA42933 0 0.01 -0.01 0.18 -0.04 -0.06 -0.0224127 0 NA NA NA NA NA NA10976 0 NA NA NA NA NA NA11098 0 NA NA NA NA NA NA17302 0 NA NA NA NA NA NA17463 0 0.09 -0.07 -0.19 -0.08 -0.29 -0.1017569 0 NA NA NA NA NA NA17657 0 NA NA NA NA NA NA17882 0 -1.24 -1.22 -1.19 -1.42 -1.20 -1.2019588 0 NA -0.65 NA NA -0.56 -0.5911165 0 NA NA NA NA NA NA17325 0 NA NA NA NA NA NA17488 0 -0.18 -0.43 -0.07 0.15 0.10 0.0817577 0 NA NA NA NA NA NA

Page 103: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

11120 0 NA NA NA NA NA NA11171 0 NA NA NA NA NA NA17336 0 NA NA NA NA NA NA17498 0 NA NA NA NA NA NA17592 0 NA NA NA NA NA NA17814 0 NA NA NA NA NA NA17904 0 -0.30 -0.31 -0.05 0.05 0.01 0.1621757 0 NA NA -1.23 -1.26 NA -0.7911061 0 NA NA NA NA NA NA11134 0 NA NA NA NA NA NA11181 0 NA NA NA NA NA NA17353 0 NA NA NA NA NA NA17508 0 NA NA NA NA NA NA17606 0 NA NA NA NA NA NA17927 0 0.01 0.15 0.01 -0.34 NA NA30493 0 NA NA NA NA NA NA33668 0 NA NA NA NA NA NA42485 0 NA NA NA NA NA NA42533 0 NA NA NA NA NA NA42570 0 NA NA NA NA NA NA42615 0 NA NA NA NA NA NA42663 0 NA NA NA NA NA NA42759 0 NA NA NA NA NA NA42806 0 -6.20 -6.17 -6.32 -6.43 -6.07 -6.2942858 0 NA NA NA NA NA NA33915 0 NA NA NA NA NA NA42493 0 NA NA NA NA NA NA42672 0 NA NA NA NA NA NA42723 0 NA NA NA NA NA NA42766 0 NA NA NA NA NA NA42869 0 1.15 1.16 1.14 1.18 0.94 1.2631038 0 NA NA NA NA NA NA42450 0 NA NA NA NA NA NA42542 0 -0.16 NA NA NA NA NA

Page 104: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42580 0 NA NA NA NA NA NA42772 0 NA NA NA NA NA NA42818 0 -0.24 0.02 -0.24 -0.40 -0.19 -0.2242874 0 NA NA NA NA NA NA28884 0 NA NA NA NA NA NA42547 0 NA NA NA NA NA NA42633 0 NA NA NA NA NA NA42688 0 NA NA NA NA NA NA42776 0 -0.23 -0.34 -0.36 -0.33 -0.28 -0.3442825 0 -0.47 NA NA NA NA NA43008 0 0.42 0.20 0.27 0.40 -0.02 -0.0228302 0 -0.52 -0.39 -0.42 -0.63 -0.39 -0.3842928 0 NA NA NA NA NA NA42974 0 -0.05 -0.41 0.00 0.06 0.11 0.0143011 0 0.38 0.16 0.15 0.29 -0.13 0.1342487 0 -4.34 -4.41 -3.81 -3.64 -3.88 -3.9242934 0 NA NA NA NA NA NA17751 0 0.30 0.24 0.25 0.25 0.19 0.3643014 0 0.12 0.15 0.06 0.06 0.09 0.2942526 0 -4.00 -4.30 -3.90 -3.74 -3.58 -3.6642720 0 NA NA NA NA NA NA42669 0 NA NA NA NA NA NA32812 0 NA NA NA NA NA NA27821 0 NA NA NA NA NA NA11262 0 NA NA NA NA NA NA42722 0 NA NA NA NA NA NA29544 0 NA NA NA NA NA NA26160 0 NA NA NA NA NA NA11271 0 NA NA NA NA NA NA42864 0 -0.10 -0.08 -0.34 -0.58 -0.32 -0.5413417 0 NA NA NA NA NA NA14294 0 NA NA NA NA NA NA42907 0 NA NA NA NA NA NA28444 0 NA NA NA NA NA NA

Page 105: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

13137 0 0.33 0.46 0.46 0.54 0.03 0.4717299 0 NA NA NA NA NA NA17460 0 NA NA NA NA NA NA17567 0 NA NA NA 0.35 NA NA17655 0 NA NA NA NA NA NA17878 0 -0.80 -1.14 -0.50 -0.17 -0.23 -0.595250 0 -0.39 -0.09 -0.29 -0.42 -0.02 -0.31

17315 0 NA NA NA NA NA NA17573 0 -1.42 -1.56 -1.37 -1.26 -1.36 -1.4717886 0 NA NA NA NA NA NA11045 0 0.10 0.31 0.34 0.34 0.37 0.2311169 0 NA NA NA NA NA NA17332 0 NA NA NA NA NA NA17493 0 NA NA NA NA NA NA17589 0 NA NA NA NA NA NA21702 0 NA NA NA NA NA NA10618 0 0.43 0.37 0.32 0.32 0.52 NA11058 0 NA NA NA NA NA NA11177 0 -0.25 -0.06 -0.26 -0.22 -0.17 -0.2313183 0 0.01 NA -0.03 NA NA NA17349 0 NA NA NA NA NA NA17507 0 NA NA NA NA NA NA17596 0 -0.38 -0.34 -0.17 -0.36 -0.20 -0.2517822 0 0.46 NA 0.48 0.50 NA NA17922 0 NA NA NA NA NA NA27378 0 -0.98 -0.88 -0.95 -0.96 -0.86 -0.8528009 0 NA NA NA NA NA NA42484 0 NA NA NA NA NA NA42614 0 NA NA NA NA NA NA42662 0 NA NA NA NA NA NA42715 0 NA NA NA NA NA NA42758 0 NA NA NA NA NA NA42857 0 NA NA NA NA NA NA30716 0 NA NA NA NA NA NA

Page 106: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42491 0 0.01 0.13 0.02 -0.06 -0.04 0.0742537 0 -0.52 -0.39 -0.57 -0.64 -0.58 -0.6742618 0 NA NA NA NA NA NA42671 0 -0.16 -0.35 -0.15 -0.17 -0.25 -0.1442762 0 -0.25 -0.71 -0.45 -0.14 -0.70 -0.6528396 0 NA NA NA NA NA NA42447 0 NA NA NA NA NA NA42497 0 NA NA NA NA NA NA42541 0 NA NA NA NA NA NA42624 0 1.15 0.98 1.04 1.08 1.21 0.9542873 0 NA NA NA NA NA NA28703 0 NA NA NA NA NA NA31349 0 NA NA NA NA NA NA42455 0 NA NA NA NA NA NA42504 0 NA NA NA NA NA NA42545 0 NA NA NA NA NA NA42584 0 NA NA NA NA NA NA42683 0 NA NA NA NA NA NA42775 0 NA NA NA NA -0.77 NA42824 0 NA NA NA NA NA NA42885 0 NA NA NA NA NA NA42921 0 0.41 0.67 0.60 0.52 0.59 0.4642968 0 0.24 -0.24 0.15 0.35 0.73 0.0443007 0 0.04 -0.02 0.09 0.11 -0.02 -0.0627560 0 -0.39 -0.56 0.01 0.00 0.30 0.0342926 0 NA NA NA NA NA NA42972 0 -0.19 -0.45 -0.15 -0.24 -0.42 -0.3743010 0 0.38 0.20 0.28 0.31 -0.22 0.1730209 0 NA NA NA NA NA NA42932 0 NA NA NA NA NA NA33399 0 0.10 0.02 0.16 0.30 0.10 0.2242521 0 -3.10 -3.32 -2.97 -2.91 -2.88 -2.9942941 0 NA NA NA NA NA NA43018 0 0.03 -0.02 0.06 -0.05 0.10 -0.12

Page 107: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

42710 0 NA NA NA NA NA NA42665 0 NA NA NA NA NA NA13186 0 NA NA NA NA NA NA30293 0 NA NA NA NA NA NA42685 0 NA NA NA NA NA NA13371 0 NA NA NA NA NA NA25728 0 NA NA NA NA NA NA11268 0 NA NA NA NA NA NA42862 0 NA NA NA NA NA NA13393 0 NA NA NA NA NA NA30747 0 NA NA NA NA NA NA11275 0 NA NA NA NA NA NA42903 0 NA NA NA NA NA NA28568 0 NA NA NA NA NA NA3320 0 0.11 0.17 -0.09 0.10 0.25 0.24

13133 0 NA NA NA NA NA NA17295 0 -0.45 -0.46 -0.24 -0.20 -0.37 -0.1917459 0 NA NA NA NA NA NA17566 0 0.14 0.30 0.09 -0.20 -0.16 -0.1917652 0 NA NA NA NA NA NA11104 0 0.76 0.89 0.78 0.48 0.61 0.5713146 0 NA NA NA NA NA NA17571 0 NA NA NA NA NA NA

Page 108: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

Supplemental Table 3p<0.05U87 Hs683

GeneID Symbol logFC (U87-20/U87-C) GeneID Symbol logFC (Hs-

20/Hs-C)7057 THBS1 1.64 10959 TMED2 -1.7457214 KIAA1199 1.50 3488 IGFBP5 -0.951746 DLX2 1.68 2530 FUT8 -0.92102 ADAM10 1.31 716 C1S -0.88

131578 LRRC15 1.19 5819 PVRL2 -0.996319 SCD -1.15 81537 SGPP1 -0.986446 SGK1 1.16 5528 PPP2R5D -0.848614 STC2 1.38 6426 SFRS1 -0.97797 CALCB 1.24 81622 UNC93B1 -0.85

25976 TIPARP 1.12 9948 WDR1 -1.3457471 ERMN 1.56 3655 ITGA6 -0.821116 CHI3L1 -1.12 55353 LAPTM4B -1.3181606 LBH 1.31 55959 SULF2 -1.208871 SYNJ2 1.08 8301 PICALM -0.773399 ID3 1.12 389860 PAGE2B 1.213929 LBP -1.04 57475 PLEKHH1 0.722744 GLS 1.08 11060 WWP2 -0.991545 CYP1B1 1.02 4536 ND2 -0.681827 RCAN1 1.09 4150 MAZ -1.103398 ID2 1.16 3486 IGFBP3 -1.155631 PRPS1 1.12 169981 SPIN3 -0.683486 IGFBP3 0.94 3654 IRAK1 -0.952123 EVI2A 1.04 51263 MRPL30 -0.686447 SCG5 1.00 10140 TOB1 -1.199595 CYTIP 2.02 4107 MAGEA8 0.6825805 BAMBI 1.17 283131 TncRNA -0.7323705 CADM1 1.20 833 CARS -0.916591 SNAI2 0.93 1727 CYB5R3 -0.821290 COL5A2 0.97 440350 LOC440350 -0.64

220002 CYBASC3 1.02 1284 COL4A2 -1.08220 ALDH1A3 1.07 1663 DDX11 -1.05

29116 MYLIP 0.92 7534 YWHAZ -1.1255859 BEX1 0.85 23530 NNT -0.8126585 GREM1 0.89 10963 STIP1 -1.0225903 OLFML2B 0.95 4982 TNFRSF11B -1.0356937 PMEPA1 0.81 6259 RYK -0.614015 LOX 0.79 427 ASAH1 -0.6451309 ARMCX1 0.88 83440 ADPGK -0.9254899 PXK 0.78 11329 STK38 -0.828076 MFAP5 0.78 6687 SPG7 -1.01

An-Jou Angela Chen
CHEN_
Page 109: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

57491 AHRR 0.92 253943 YTHDF3 -0.8026289 AK5 1.01 25832 NBPF14 -0.7711034 DSTN 0.77 7094 TLN1 -0.726876 TAGLN 1.16 10362 HMG20B -0.77800 CALD1 0.81 8295 TRRAP -1.03329 BIRC2 0.82 91304 C19orf6 -1.12

131601 GPR175 0.73 84818 IL17RC -0.681410 CRYAB 0.80 22822 PHLDA1 -1.153099 HK2 0.73 7057 THBS1 -0.611745 DLX1 0.75 5621 PRNP -1.457280 TUBB2A 0.81 26092 TOR1AIP1 -0.9223328 SASH1 0.85 4811 NID1 -0.633397 ID1 0.78 2521 FUS -0.9883641 FAM107B 1.02 78994 PRR14 -0.9284888 SPPL2A 0.75 6624 FSCN1 -1.4523225 NUP210 -0.76 1174 AP1S1 -0.6764798 DEPDC6 0.76 64924 SLC30A5 -1.094092 SMAD7 0.93 11049 YDD19 -0.602196 FAT2 0.69 3949 LDLR -0.851739 DLG1 0.74 6515 SLC2A3 -0.563159 HMGA1 -0.88 22904 SBNO2 -0.93

115701 ALPK2 0.78 55236 UBA6 -0.599200 PTPLA 0.70 3159 HMGA1 -1.07

114907 FBXO32 0.72 65220 NADK -0.66

9890 LPPR4 1.02 10211 FLOT1 -0.66

84803 AGPAT9 0.68 56904 SH3GLB2 -1.0811096 ADAMTS5 0.69 6595 SMARCA2 -0.971277 COL1A1 0.76 396 ARHGDIA -1.5911098 PRSS23 0.73 11112 HIBADH -0.95

654433 LOC654433 0.82 10629 TAF6L -0.644091 SMAD6 0.64 29785 CYP2S1 -0.68

169611 OLFML2A -0.78 2280 FKBP1A -1.1928231 SLCO4A1 -0.77 2271 FH -1.0351003 MED31 0.72 5725 PTBP1 -1.315480 PPIC 0.67 9084 VCY 0.5423671 TMEFF2 -1.18 7531 YWHAE -1.7155740 ENAH 0.76 3092 HIP1 -0.6151429 SNX9 0.65 1116 CHI3L1 -0.543685 ITGAV 0.87 3688 ITGB1 -1.3422861 NLRP1 0.71 334 APLP2 -0.851879 EBF1 0.64 51008 ASCC1 -0.546400 SEL1L 0.83 1613 DAPK3 -1.149022 CLIC3 0.65 9123 SLC16A3 -0.812697 GJA1 0.66 5428 POLG -0.827025 NR2F1 -0.69 79102 RNF26 -0.7557120 GOPC 0.77 60592 SCOC -1.03

Page 110: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

284266 SIGLEC15 -0.66 11080 DNAJB4 -0.643911 LAMA5 -0.73 11259 FILIP1L -0.7584333 PCGF5 0.66 90379 LOC90379 -0.987846 TUBA1A 0.69 55314 TMEM144 0.537296 TXNRD1 0.6523704 KCNE4 0.6310882 C1QL1 -0.631642 DDB1 0.642258 FGF13 0.6810628 TXNIP -0.64

900 CCNG1 0.732040 STOM 0.626662 SOX9 -0.6650804 MYEF2 -0.65

135228 CD109 0.66143903 LAYN 0.6284909 C9orf3 0.871803 DPP4 0.61521 ATP5I 0.68

5136 PDE1A 0.633613 IMPA2 0.6551065 RPS27L 0.817123 CLEC3B 0.615738 PTGFRN 0.6451232 CRIM1 0.6964943 NT5DC2 -0.621509 CTSD 0.629604 RNF14 0.601191 CLU -0.62160 AP2A1 -0.61

25992 SNED1 -0.623679 ITGA7 -0.688337 HIST2H2AA3 0.7392235 DUSP27 0.6423588 KLHDC2 0.6651714 SELT 0.742752 GLUL 0.6289927 C16orf45 0.5810927 SPIN1 0.5884913 ATOH8 0.6056731 SLC2A4RG -0.5827075 TSPAN13 0.882693 GHSR -0.6164130 LIN7B 0.5851313 C4orf18 0.922009 EML1 0.75

114294 LACTB 0.60

Page 111: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

80727 TTYH3 -0.6010945 KDELR1 -0.5880210 ARMC9 0.6555251 PCMTD2 0.8351669 TMEM66 0.6951566 ARMCX3 0.846303 SAT1 0.614061 LY6E -0.601261 CNGA3 0.8281689 ISCA1 0.759367 RAB9A 0.6223167 EFR3A 0.6480255 SLC35F5 0.7923032 USP33 0.61

153561 GUSBP1 0.589415 FADS2 -0.63

284454 LOC284454 0.64858 CAV2 0.82

29015 SLC43A3 -0.5781889 FAHD1 0.613162 HMOX1 0.6323766 GABARAPL3 0.6081853 TMEM14B 0.7910559 SLC35A1 0.582194 FASN -0.71288 ANK3 0.60

51390 AIG1 0.7310632 ATP5L 0.5584274 COQ5 0.57

114787 GPRIN1 -0.602764 GMFB 0.56

375061 FAM89A 0.55481 ATP1B1 0.57

6781 STC1 -0.559497 SLC4A7 0.60961 CD47 0.59

6424 SFRP4 0.7055924 C1orf183 -0.5951567 TTRAP 0.70

284654 RSPO1 -0.5923677 SH3BP4 0.79

244 ANXA8L2 0.585880 RAC2 -0.6023479 ISCU 0.552034 EPAS1 -0.711612 DAPK1 0.566720 SREBF1 -0.65

Page 112: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

54908 CCDC99 0.609540 TP53I3 0.5784340 GFM2 0.5810440 TIMM17A 0.5422931 RAB18 0.5855754 TMEM30A 0.543052 HCCS 0.5355081 IFT57 0.8510092 ARPC5 0.5551422 PRKAG2 0.64

285489 DOK7 0.6391452 ACBD5 0.616767 ST13 0.533006 HIST1H1C 0.605360 PLTP -0.6727020 NPTN 0.6484695 LOXL3 0.57

338773 TMEM119 0.571440 CSF3 -0.544783 NFIL3 0.655165 PDK3 0.557425 VGF -0.532108 ETFA 0.635310 PKD1 -0.531953 MEGF6 0.5464924 SLC30A5 0.584942 OAT 0.544189 DNAJB9 0.608992 ATP6V0E1 0.524856 NOV 0.52

19 ABCA1 -0.5510892 MALT1 0.5355255 WDR41 0.525865 RAB3B -0.654232 MEST -0.575861 RAB1A 0.592030 SLC29A1 -0.703475 IFRD1 0.623703 STT3A 0.5253635 PTOV1 -0.6351742 ARID4B -0.54

112770 C1orf85 0.5926994 RNF11 0.711371 CPOX 0.6510477 UBE2E3 0.5410150 MBNL2 0.568817 FGF18 -0.64

Page 113: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

7763 ZFAND5 0.51427 ASAH1 0.59

57515 SERINC1 0.608334 HIST1H2AC 0.6164747 MFSD1 0.57

114327 EFHC1 0.58

Page 114: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

Ink4a/Arf-/- Pten-/- astrocytesGeneID Symbol logFC (IP-

20/IP-C)16009 Igfbp3 0.8119736 Rgs4 -1.19227929 Cytip 0.8114264 Fmod -0.9921808 Tgfb2 -0.84116847 Prelp -1.0411770 Fabp4 -0.8321825 Thbs1 -0.83227580 C1ql3 0.7118162 Npr3 -0.7614585 Gfra1 0.6420377 Sfrp1 0.6619242 Ptn -0.6111668 Aldh1a1 -0.7618295 Ogn -0.5926358 Aldh1a7 -0.9068713 Ifitm1 0.7912797 Cnn1 -0.59114774 Pawr -0.5719288 Ptx3 -0.6466695 Aspn -0.9913591 Ebf1 -0.5714199 Fhl1 -0.5919016 Pparg -0.6420257 Stmn2 -0.7552331 Stbd1 -0.6112159 Bmp4 -0.5914456 Gas6 -0.6398932 Myl9 -0.88105349 Akr1c18 0.5420356 Sema5a 0.5519092 Prkg2 0.59231329 Polr2b -0.5822361 Vnn1 -0.6712832 Col5a2 -0.58232174 Cyp26b1 -0.5221345 Tagln -0.9519227 Pthlh 0.8717130 Smad6 -0.69228026 Pdk1 0.78

Page 115: Genes & Developmentgenesdev.cshlp.org/content/suppl/2012/07/02/26.13.1459.DC1/QKI_S… · 02/07/2012  · 23250 ATP11A: ATPase, class VI, type 11A 1.76 2.07 84930 MASTL: microtubule

17756 Mtap2 -0.5556363 Tmeff2 -0.6221810 Tgfbi -0.4877569 Limch1 -0.5923945 Mgll -0.50329941 Col8a2 -0.9713078 Cyp1b1 -0.4967448 Plxdc2 -0.4816007 Cyr61 -0.68214639 4930486L24Rik -0.4756312 Nupr1 -0.5912490 Cd34 0.5712831 Col5a1 -0.4654140 Avpr1a -0.4823794 Adamts5 -0.6220296 Ccl2 -0.5619876 Robo1 -0.5767451 Pkp2 -0.6970097 Sash1 -0.5514066 F3 -0.6116956 Lpl -0.44319188 Hist1h2bp -0.5267896 Ccdc80 -0.45107449 Unc5b -0.46

217066 OTTMUSG00000001305 0.44