common names services in openup! rainer,h. 1, koller,w. 1 & wandl-vogt,e. 2 1 nhm vienna; 2...

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Common Names Services in OpenUp! Rainer,H. 1 , Koller,W. 1 & Wandl- Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu open-up.eu

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Page 1: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Common Names Services in OpenUp!

Rainer,H.1, Koller,W.1 & Wandl-Vogt,E.2

1NHM Vienna; 2Austrian Academy of Sciences

open-up.euopen-up.eu

Page 2: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Description of OpenUp! WP 6

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Multilingual Metadata Enrichment - Common Names

Provider

ABCD 206<xs:element name="FullScientificNameString" type="String">Bellis perennis L.</xs:element>

Common namesAusdauerndes Gänseblümchen (German) Cvetiče ledinsko (Croatian)Daisy (English) …..

ESE-Title: Bellis perennis L.ESE-addTitle: Ausdauerndes Gänseblümchen

Cvetiče ledinsko Daisy

Page 3: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Sources

GBIF - Vernacular Names Extension to DwCAhttp://tools.gbif.org/dwca-validator/extension.do?id=http://rs.gbif.org/terms/1.0/VernacularName http://darwincore.googlecode.com/svn/trunk/terms/index.htm#vernacularName

Catalogue of Life CNShttp://documents.sp2000.org/AC/Samples/new/ERD2011June7.jpg

EDIT CDM http://dev.e-taxonomy.eu/trac/wiki/CommonDataModel

Anthos CNS www.anthos.es

Common Names Schema

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Page 4: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Common Names Model

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Page 5: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Common Names Schema

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Standards / Sources touched

geography – OGC – www.geonames.org language – ISO 639 (-3 /-6) - www.geolang.com

persons – FOAF – www.viaf.org specimens – ABCD – BIOCASE / GBIFliterature – OLEF (incl. MODS) – BHL / Citebank

descriptions – SDD – ?

transliterations - ?? - ??ethnicities - ?? - ??

Page 6: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Common Names Service Specifications

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follow Google Refine Reconciliation Service API specifications – http://code.google.com/p/google-refine/wiki/ReconciliationServiceApi

Service Metadata A call to the service without any query will return the service metadata.

Response{ "name": "OpenUp! Common Names Service", "identifierSpace": "http://open-up.eu/commonNames/", "schemaSpace": "http://open-up.eu/commonNames/"}

Query RequestThe query object should be passed as JSON formatted object using the "query" parameter.Single Query ModeQuery the service using a single taxon name.ParametersA query: Name to query forlimit: Limit number of resultstype: should always be "/name/common"

Page 7: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Common Names Service Specifications

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Example{ "query": "Berberis vulgaris", "limit": 3, "type": "/name/common"}Example{ "id": "uri:still:to:be:defined", "name": "Boasslbee", "type": ["/name/common"], "score": 100.0, "match": true, "language": "bar", "geography": "aut", "period": "1934-1950", "taxon": "Berberis vulgaris", "taxon_id": "uri:taxon:id:provided:by:reference:services", "reference": "uri:of:reference:"}

Page 8: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Names Service Architecture

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Services for Scientific Names and Concepts (incl. fuzzy matching)Botanical (Kew)Zoological (University of Helsinki)

Service for Common Names botanical & zoological (NHM Vienna)

http://open-up.eu/content/common-names-service

Page 9: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Common Names Service Architecture

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Page 10: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Names Services for Use

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Catalogue of Life – webservicesPESI – webservices

GBIF – general names registry – IPT installation for OpenUp! (OpenUp!) General Repository for CNGNA / EOL ?

National Standard Lists – incl. Common Names

Thematic Lists ( bats of europe )

Personal level – non taxonomists ( Spices )

Page 11: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Implementation Common Names for Annonaceae

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Page 12: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Implementation Common Names for Annonaceae

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Page 13: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Implementation Common Names for Annonaceae

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Page 14: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Implementation Common Names for Annonaceae

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Page 15: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Implementation Common Names for Annonaceae

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Page 16: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Implementation Common Names for Annonaceae

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Page 17: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Implementation Common Names for Annonaceae

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Page 18: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Implementation Common Names for Annonaceae

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Page 19: Common Names Services in OpenUp! Rainer,H. 1, Koller,W. 1 & Wandl-Vogt,E. 2 1 NHM Vienna; 2 Austrian Academy of Sciences open-up.eu

Final Goal

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Integrate as many sources for as many (european) languages as possible

Names Provision Facility (IPT – or local implementation)

Common Names Service – ext. after OpenUp!