chem 125 lecture 37 12/10/08 this material is for the exclusive use of chem 125 students at yale and...

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Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not readily understood

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Page 1: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Chem 125 Lecture 3712/10/08

This material is for the exclusive use of Chem 125 students at Yale and

may not be copied or distributed further.

It is not readily understood without reference to notes or the wiki from the lecture.

Page 2: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

3) The Law of Mass Action

from counting random arrangements of a fixed number of energy bits

2) The Entropy Factor eTS/kT

random

Exponents &Three Flavors of Statistics

1) The Boltzmann Factor e -H/RT

= Wfrom counting W, the number of

molecular structures being grouped

R

k

Same thing:

k is per individual molecule

R is per mole (= k NA)

“there’s a divinity that shapes our ends”

Hamlet V:2

Page 3: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Cyclohexane Conformers

few"structures"

few"structures"

many "structures"

many quantum statesfewquantum

states

fewquantum

states

Chair(stiff)

Chair(stiff)

Twist-Boat(flexible)

0

5.5

10.8

7.0

kcal

/mol

e

Both classical and quantum views suggest a statistical "entropy" factor (of ~7) favoring twist-boat.

This reduces the room-temperature Boltzmann "enthalpy"

bias of 10-(3/4) 5.5 = 14,000 in favor of chair to about 2,000.

Page 4: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Experimental EntropyAlthough we discuss entropy theoretically

(in statistical terms), physical chemists can measure it experimentally.

The entropy of a perfectly ordered crystalline material at zero Kelvin is zero ( ln 1 ).

As the material is warmed it gains entropy in increments of (Heat Absorbed)/Temperature.

S = H/T“Floppy” molecules with closely spaced energy levels

absorb more energy, and at lower temperatures, and thus gain more S on warming. Cf. Ethane rotation - Lecture 31

Page 5: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

3) The Law of Mass Action

from counting random arrangements of a fixed number of energy bits

2) The Entropy Factor eTS/kT

Exponents &Three Flavors of Statistics

1) The Boltzmann Factor e -H/RT

= Wfrom counting W, the number of

quantum states being grouped

K =

e-

G/R

T

from counting molecules per volume

weighted

Page 6: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Law of Mass Action

Late 1700s : Attempts to assemble. hierarchy of “Affinities”

Mid 1800s : Equilibrium “K” as balance of forward and reverse rates...

Early 1800s : Amounts [concentration] can shift reaction direction away. from “affinity” prediction. …

Page 7: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

[concentration]

[A2]

[A] 2

= K

2 A A2

[A2] [A] 2= K

Where does the exponent come from?

Law of Mass Action

Page 8: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

RandomlyDistributed“Particles”

# Particles # Dimers

50 1

100 9

150 19

200 35

250 59

Page 9: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

[D] = K [P] 2

RandomlyDistributed“Particles”

# Particles # Dimers

50 1

100 9

150 19

200 35

250 59

# of Particles

# of

Dim

ers

Increasing concentration increases both the numberof units and the fractionof units that have nearneighbors.

numberfraction

Page 10: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Equilibrium, Statistics & Exponents

Particle Distribution : Law of Mass Action [A2]

[A] 2

= K

Energy Distribution : H , Boltzmann Factor

K e-H/RT

Counting Quantum States : S

K eS/R

Page 11: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Free energy determines what can happen (equilibrium)

K = e-G/RT

= 10-(3/4)G kcal/mole@ room Temp

But how quickly will it happen? (kinetics)

Energy & Entropy

Page 12: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Classical Trajectories &

The Potential Energy Surface

Visualizing Reaction

Page 13: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Potential Energy“Surface” for StretchingDiatomic Molecule A-B

A-B Distance

PotentialEnergy

Rolling Ball Maps A-B Vibration

Page 14: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Potential Energy Surface

for LinearTriatomic A-B-C

Cliff

Pass(Transition State)

Plateau

Valley

ridge

+ maxim

umminim

um

*

* So 2-D specifies structure

Page 15: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Vibration of A-B with distant C spectator

Slice and fold back

Potential Energy Surface

for LinearTriatomic A-B-C

Vibration of B-C with distant A spectator

Page 16: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Unreactive Trajectory:(A bounces off vibrating B-C)

Potential Energy Surface

for LinearTriatomic A-B-C

Page 17: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

C flies away from

vibrating A-B

Reactive Trajectory

A approaches non-vibrating B-C

Potential Energy Surface

for LinearTriatomic A-B-C “classical” trajectory

(not quantum)

Page 18: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

H3 SurfaceHenry Eyring

(1935)

Crazy angle of axes means that classical trajectories can be modeled by rolling marble.

Transition State(“Lake Eyring”)

Page 19: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

H + H-Br

Page 20: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Studying Lots ofRandom Trajectories

Provides Too Much Detail

Summarize Statisticallywith Collective

Enthalpy (H) & Entropy (S)

Page 21: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

“steepest descent” path Slice along

path, then flatten and tip up to create…

(not a trajectory)

Page 22: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

“Reaction Coordinate” Diagram(for a one-step atom transfer)

Not a trajectory, but a sequence of three species

StartingMaterials Products

Transition “State”

G

each with H and S, i.e. Free Energy (G)

Page 23: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Free Energy determineswhat can happen (equilibrium)

K = e-G/RT

= 10-(3/4)G kcal/mole@ room Temp

and how rapidly (kinetics)

k (/sec) = 1013 e-G /RT‡

‡= 1013-(3/4)G kcal/mole@ room Temp

Amount of ts

(universal) Velocity

of ts theory

Since the transition stateis not truly in equilibrium

with starting materials, and the velocity is not universal,the theory is approximate.

Page 24: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Using Energies to Predict Equilibria and Rates for

One-Step Reactions:Free-Radical Halogenation

H CH3Cl Cl••

H Cl

CH3 Cl Cl•

CH3Cl

Cl

"free-radical chain"

Page 25: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Are Average Bond Energies “Real” or just a trick for

reckoning molecular enthalpy ?

Bond Dissociation Energiesare real.

Page 26: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

BondDissn Energies

99

90113

89

105111

89

115

111

123136.2

127

8485

8585

91

9774

122 85 72 5459 46

516756

5857

57

7272

7473

8463

9294

best values as of 2003

Page 27: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Ellison I

Larger halogen

Poorer overlap with H(at normal bond distance)

& less e-transfer to halogen•H

• I

•H

• F• •

• •

less e-stabilization

weaker bond Diagram qualitative; not to scale.

Page 28: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Ellison II

No special stabilizationSOMO orthogonal to *)

C-H bond unusually strong(good overlap from sp2

C)Vinyl

C-H bond normal(sp3

C , as in alkane)Allyl Special stabilization

SOMO overlaps *)

hard

111

PhenylDittoDitto

hard

113

easy

89

DittoDitto

Benzyleasy

90

All H-Alkyl 100 ± 5Same trend as

H-Halogen

Special Cases

•SOMOC•

• • • •

• •

Are unusual BDE values due to unusual bonds or unusual radicals?

oractually

Page 29: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

H3C H + X X H3C X + H X

FClBrI

37584636

105”””

142163151141

251187160129

1361038871

115847258

Possibility of Halogenation(Equilibrium)

109199

12

Cost Return Profit

Page 30: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

H3C H + X X H3C X + H X

Possibility of Halogenation(Equilibrium)

FClBrI

37584636

105”””

142163151141

251187160129

1361038871

115847258

109199

12

Cost Return Profit

Is break-two-bonds-then-make-two a plausible Mechanism?at RT (~300K)?

at ~3000K? 1013 10-106 = 10-93/sec 1013 10-10.6 = 250/sec

How about rate (which depends on Mechanism)?

No Way! Yes (unless there is a faster one)

• •• •

Page 31: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

H H2

H2 H

HHH

H H H

HenryEyring

(1935)Dissociation followed by association requires high activation energy.

SLOW

Make-as-you-break “displacement” is much easier.

FAST

Page 32: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Free-Radical Chain Substitution

X-HR-H

X-XR-X

•X •Rcyclicmachinery

Page 33: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

H3C-H + X2 HX + H3CX

FClBrI

37584636

105”””

142163151141

251187160129

1361038871

115847258

Possibility of Halogenation(Equilibrium)

109249

12

Cost Return Profit

H3C-H HXX•

X2 H3CXH3C•

37584636

1361038871

Step 1

312

1734

Step 2

78262622

(Mechanism for Reasonable Rate)

How can we predict activation energy?

Page 34: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Organic Chemistry

Paul D. Bartlett1907-1997

Physical

Page 35: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

http

://os

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.ore

gons

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.edu

/spe

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colle

ctio

ns/c

oll/p

aulin

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7v.1

-boo

kdun

itz.h

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Jack Dunitz: At the time when I was reading that book I was wondering whether chemistry was really as interesting as I had hoped it was going to be. And I think I was almost ready to give it up and do something else. I didn't care very much for this chemistry which was full of facts and recipes and very little thought in it, very little intellectual structure. And Pauling's book gave me a glimpse of what the future of chemistry was going to be and particularly, perhaps, my future.1939

Page 36: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

The Chemical BondIs there an Atomic Force Law?

Feeling & Seeing Molecules and Bonds

Understanding Bonding & Reactivity through H = E

How chemists learned to treasureComposition, Constitution,

Configuration, Conformationand Energy

Page 37: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

Is there an Atomic Force Law?

Feeling & Seeing Molecules and Bonds

Understanding Bonding & Reactivity through H = E

How chemists learned to treasureComposition, Constitution,

Configuration, Conformationand Energy

The Chemical Bond

How does science know?

Compared to what?

Were chemical bonds discovered or invented?

Some Big Questions:

Would we even have chemical bonds without our own chemical forbearers?

Page 38: Chem 125 Lecture 37 12/10/08 This material is for the exclusive use of Chem 125 students at Yale and may not be copied or distributed further. It is not

End of Lecture 37Dec. 10, 2008

Good Luck on the Final!