what’s new in flybase edrc 2015, heidelberg. visualising interaction networks
TRANSCRIPT
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What’s New in FlyBaseEDRC 2015, Heidelberg
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Visualising interaction networks
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Visualising interaction networksPhysical interactions
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Visualising interaction networksGenetic interactions
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• Collaboration with esyN (www.esyn.org) to add network diagrams
Visualising interaction networksGenetic interactions
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Visualising interaction networksPhysical interactions
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Visualising interaction networksPhysical interactions
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Visualising interaction networksPhysical interactions
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Visualising interaction networksPhysical interactions
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Visualising interaction networksPhysical interactions
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Visualising interaction networksPhysical interactions
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Visualising interaction networksPhysical interactions
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• Common interactors highlighted in purple
Visualising interaction networksPhysical interactions
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Go to esyN website to:• Add interactions for other
nodes• Build your own networks
Visualising interaction networks
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Gene Groups: what are they?
• Defined set of genes that are biologically related:
• Evolutionarily-related families e.g. actins• Subunits of a complex e.g. ribosome• Common molecular function e.g. lysine methyltransferases
• Group membership based on published papers/reviews
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Gene Groups: reports
• Single page for each group:
• Lists members of the group
• Summarises key features of the group
• Provides links to get more detail
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Gene Groups: reports
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Gene Groups: reports
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Gene Groups: reports
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Gene Groups: reports
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Gene Groups: reports
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Gene Groups: accessing the data• Follow the links from the gene reports:
• Search using the ‘Gene Groups’ tab on QuickSearch:
• Browse the list of all Gene Group reports:
…
…
…
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Human Disease Reports
• Increasing number of fly papers on human disease models
1993 1998 2003 2008 2013Year:
Drosophila articles containing “disease” in the abstract or title
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Human Disease Reports
• Single page for each disease
• Bring together data relevant to modeling a human disease in flies
• Provide a summary of published fly work in non-specialist terms
• Provide links to other FlyBase reports and external databases for more detail
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DIOPT
Orthology
Human disease descriptions
Useful fly reagents
Allele
Gene
Gene
Phenotypes of fly models
Stock
Disease Report
NEW
Related diseases
Human Disease Reports
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Human Disease Reports: accessing the data• Follow the links from the gene reports:
• Search using QuickSearch:
…
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FlyBase Community Advisory Group (FCAG)• Launched September 2014• Surveys to get more feedback from the community about
(potential) changes to the website• Over 550 members from more than 40 countries
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FlyBase Community Advisory Group (FCAG)• Results of the surveys and more information
about FCAG are available on FlyBase:
• The surveys have already helped with:
• Gene Group Report content/layout• Default tracks on GBrowse
• New members are welcome ! See the page above or http://tinyurl.com/FlyBaseCAG
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Want to know more ?• At the meeting:• Exhibitor table, Großer Saal
• After the meeting:• ‘New in Release’ page lists major changes for each release:
• Sign up for the Newsletter using the button on the Home page
• ‘Contact FlyBase’ link at the bottom of every page