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Adsorbable organic bromine compounds (AOBr) in aquatic samples: a nematode based
toxicogenomic assessment of the exposure hazard
Nadine Saula,*, Stephen R. Stürzenbaumb, Shumon Chakrabartia, Nora Baberschkea, Thora Liekea, Anke Putschewc, Cindy Kochanc, Ralph Menzela, Christian E. W. Steinberga
a Department of Biology, Freshwater and Stress Ecology, Humboldt-Universität zu Berlin, Späthstr. 80/81, 12437 Berlin, Germanyb School of Biomedical Sciences, Analytical and Environmental Sciences Division, King's College London, 150 Stamford Street, London, SE1 9NH, UKc Chair of Water Quality Control, Technische Universität Berlin, Straße des 17. Juni 135, 10623 Berlin, Germany
* Corresponding author:Telephone: 0049 (0)30 6397 4444Fax: 0049 (0)30 636 9446Email address: [email protected]
Abstract
Elevated levels of adsorbable organic bromine compounds (AOBr) have been detected in
German lakes, and cyanobacteria like Microcystis, which are known for the synthesis of
microcystins, are one of the main producers of natural organobromines. However, very little
is known about how environmental realistic concentrations of organobromines impact
invertebrates. Here, the nematode C. elegans was exposed to AOBr-containing surface water
samples and to a Microcystis aeruginosa enriched batch culture (MC-BA) and compared to
single organobromines and microcystin-LR exposures. Stimulatory effects were observed in
certain life trait variables, which were particularly pronounced in nematodes exposed to MC-
BA. A whole genome DNA-microarray revealed that MC-BA led to the differential
expression of more than 2000 genes, many of which are known to be involved in metabolic,
neurologic, and morphologic processes. Moreover, the up-regulation of cyp- and the down-
regulation of abu-genes suggested the presence of chronic stress. However, the nematodes
were not marked by negative phenotypic responses. The observed difference in MC-BA and
microcystin-LR (which impacted lifespan, growth and reproduction) exposed nematodes was
hypothesized to be likely due to other compounds within the batch culture. Most likely the
exposure to low concentrations of organobromines appears to buffer the effects of toxic
substances, like microcystin-LR.
Keywords: Organobromines; C. elegans; Microcystis aeruginosa; Microcystin; Microarray;
Gene expression 1
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1. Introduction
Although more than 5,000 different natural halogenated organic compounds have been
described, most attention has been devoted to marine chlorine compounds (Gribble 2009,
2012). The occurrence of organobromine compounds in freshwaters was highlighted by
Hütteroth et al. (2007) who uncovered that freshwater lakes in Berlin, Germany, can contain
(especially during the late summer months) up to 35 µg/L AOBr (adsorbable organic bromine
compounds). The authors argued that phototrophic organisms, in particular cyanobacteria,
produce AOBr which are released following their death. Moreover, these organisms are also
able to segregate haloperoxidases which catalyze the halogenation of dissolved organic matter
in the presence of halogens and hydrogen peroxide. Organohalogens are considered to exert
endocrine disruptor activities, reproductive and neurological toxicities, and carcinogenic
effects (Shaw et al. 2010) and combined with the fact that lake water itself is a source of
drinking water, may suggest that AOBr in lakes may pose a health risk to wildlife and
humans. However, this notion can be challenged with at least three mutually non-exclusive
counterarguments:
i) The majority of toxicity studies conducted to date have utilized concentrations of AOBr
which are several magnitudes higher than those found naturally in the environment.
Therefore, it is conceivable that lower and ecologically more relevant levels may trigger a bi-
phasic concentration dependent response, a so-called hormesis effect. Indeed, Wang et al.
(2012) observed a hormetic cell proliferation effect in human hepatocytes challenged with
polybrominated diphenyl ethers. Although hormetic effects can be diverse, such as enhancing
growth, increasing brood size or extending lifespan (Calabrese 2010), it is important to
evaluate several life trait variables as, from an ecological point of view, true hormesis applies
only when overall Darwinian fitness is increased.
ii) Some halogenated organic compounds, for example the polyhalogenated monoterpene
halomon produced by the marine red alga Portieria hornemannii, can offer anti-tumor
properties (Fuller et al. 1992; Andrianasolo et al. 2006). Similarly, signs of anti-tumor
activities were reported for natural organohalogens such as bromotyrosines (Simmons et al.
2005), symplocamide A (Linington et al. 2008), chlorosulfolipid (Ciminiello et al. 2001),
brominated oxylipins (Rezanka & Dembitsky 2003), and chlorinated indigoglycosides
(Maskey et al. 2002). Moreover, anti-bacterial and anti-inflammatory properties were also
ascribed to organohalogens (Kuniyoshi et al. 1985; Gribble 2004).
iii) Most toxicity studies have tested single substances in isolation, however cyanobacteria,
one of the main producers of natural organobromines, synthesise several biological active
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peptides in parallel. These cyanotoxins, like microcystins, are known for their potent
hepatotoxicity (Stewart et al. 2008; Svircev et al. 2010) and their neurotoxicity (Pouria et al.
1998). It is conceivable that hormetic and health promoting activities of organobromines may
attenuate the toxicity of cyanotoxins, at least if an organism is exposed to a mixture of both
compound classes. Cedergreen (2010) provided first tantalizing clues that hormesis may occur
within a mixture scenario as exemplified by root length growth of Lactuca sativa. Indeed,
lakes are composed of numerous other dissolved organic matters, including the humic
substances (HSs). HSs trigger oxidative stress, estrogenic action, as well as the induction of
biotransformation and stress-responsive genes (Steinberg et al. 2006, 2008; Meinelt et al.
2008). Thus, any organismal response should also take the biogeochemical background of
freshwater bodies into account.
Based on these arguments we hypothesize that organobromines in low and environmentally
realistic concentrations are non-hazardous to fauna. Moreover, we hypothesize that
organobromines buffer the toxic effects of cyanotoxins when they occur in parallel. The goal
of this study is to evaluate these hypotheses by testing water samples and a batch culture in
nematodes by using biomolecular and phenotypic methods.
Nematodes are known to be important players in energy flows and nutrient cycling in soils
and freshwater sediments (Covich et al. 1999; Mulder et al. 2011). Therefore, this study made
use of the nematode Caenorhabditis elegans, a model organism with a reputation as a good
model in ecotoxicology (Leung et al. 2008). In detail, the toxicogenomic responses and
changes in key life-history traits were investigated in the nematode challenged with two-fold
concentrated organobromine containing water sampled from two German lakes (Stößensee
and Tegeler See) during the late summer months. In addition, a Microcystis aeruginosa batch
culture (MC-BA) was applied in three different concentrations (10, 20 and 40 % of the
original culture filtrate) to simulate the conditions during a cyanobacterial bloom. The results
obtained were finally compared to analogous experiments previously performed with the
organobromines tetrabromobisphenol-A (TBBP) and dibromoacetic acid (DBAA) as well as
the microcystin-LR (MC-LR) which were recently published in parts (Saul et al. 2014a,
2014b).
2. Material and methods
2.1 Strains and conditions
The wild-type Caenorhabditis elegans strain N2 (var. Bristol) was maintained at 20 °C on
nematode growth medium (NGM) seeded with the Escherichia coli feeding strain OP50
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according to Brenner (1974). The N2 and the OP50 strain were obtained from the
Caenorhabditis Genetics Centre, University of Minnesota.
2.2 Surface water samples, M. aeruginosa batch culture and test substances
Three lake water samples of approximately 10 L were collected from Stößensee (52° 30’
34’’N 13° 12’ 34’’ E) and Tegeler See (52° 34’ 33’’ N, 13° 15’ 49’’ E) in Berlin, Germany.
Samples were filtered (0.45 µm, cellulose nitrate membrane filters; Sartorius, Germany) and
analyzed for AOBr and microcystins. Samples were lyophilized (ABiTEP, Germany) to a
volume of about 1 L and the AOBr content of each sample was re-analyzed. Furthermore, a
filtrate was taken from a M. aeruginosa (Culture Collections of Algae at the University of
Göttingen, SAG) batch culture grown in 20 L pure Z-medium amended with 200 µg/L
bromide. Table 1 shows the AOBr and microcystin concentrations in the filtrates (original,
after lyophilisation and after subsequent dilution) of the water samples and the batch culture.
Furthermore, the final concentrations which were used for the exposure scenarios in C.
elegans are indicated.
Table 1: Overview of water samples
SamplesMicrocystinin the filtrate
(µg/L)
AOBrin the filtrate (µg/L)
AOBr in samplesFinal AOBr
concentrations for exposure
(µg/L)after
lyophil-isation (µg/L)
after dilution (µg/L)
Stößensee 23.08.2010 Nd 18 148 80 36
=200 %
Tegeler See Nd 12 53 53 24Stößensee 14.09.2010 Nd 16 105 71 32Tegeler See Nd 15 119 67 30Stößensee 12.10.2010 Nd 11 94 49 22Tegeler See Nd 13 60 58 26 M. aeruginosa batch culture (MC-BA)
22.02.2011244 (MC-RR)180 (MC-YR)332 (MC-LR)
103 -234692
10.3 (= 10 %)20.6 (= 20 %)41.2 (= 40 %)
AOBr: adsorbable organic bromine compounds; MC: microcystins; nd: not detectable
To expose the nematodes with the filtrates the NGM agar was prepared according to Table 2
and the OP50 bacteria were concentrated via centrifugation and 450 µl of the diluted filtrate
were added to 550 µl bacteria. 100 µL bacteria mixture were spotted on small agar plates (ø =
35 mm) and 1000 µL on big agar plates (ø = 96 mm).
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Table 2: Preparation of NGM agarIngredients AmountNaCl 1.5 gBacto-Peptone 1.25 gAgar 8.4 g1 M KH2PO4 12.5 mL5 mg/ml Cholesterol solution 500 μLAqua bidest 262 mL
Autoclaving and cooling down to 55°C in an incubator1 M MgSO4 500 μL1 M CaCl2 500 μLFiltrate after dilution 225 µL
Distribution on petri dishes
Moreover, previously published data (Saul et al., 2014a, 2014b) from DBAA, TBBP (Sigma-
Aldrich, USA), and MC-LR (Enzo Life Sciences, USA) exposures were used for comparative
purposes. Therefore, agar and bacteria containing 22 µg/L and 11 mg/L DBAA and 54 µg/L
and 27 mg/L TBBP (corresponds to 0.1 and 50 µM, respectively) as well as 50 µg/L, 100
µg/L, and 300 µg/L MC-LR were prepared.
The samples contained equal amounts of solvent (final concentration of 0.3 % [v/v] DMSO;
Applichem, Darmstadt, Germany), Z-Medium, or water, respectively.
2.3 AOBr analysis
The concentration of adsorbable organic bound bromine (AOBr) was determined as described
by Oleksy-Frenzel et al. (2000). A 100 mL sample was acidified to pH 2 with HNO3 (conc.).
Dissolved AOBr was enriched on activated carbon and combusted. The reaction gases were
collected in 5 mL ultrapure water containing 4.5 µM Na2S. The solution was injected into an
ion chromatographic system for bromide analysis.
2.4 Analysis of microcystins
Solid phase extraction (SPE) was used to concentrate dissolved MCs from water samples and
from the batch culture sample prior to HPLC (DIN). 500mL water was passed through
Lichrolute RP 18 (300 mg, 3 cc, Merck Millipore) SPE cartridges, conditioned with 4 mL 5 %
methanol and eluted with 6.5 mL methanol acidified with 0.1 % formic acid (v/v). Organic
solvent was removed by a gentle nitrogen stream. Extracts were dissolved in 0.5 mL ultrapure
water and analyzed via an LC system with Triple-Quad MS TSQ Vantage (Thermo Fisher
Scientific) using an electrospray (ESI) interface. Separation was achieved on a Zorbrax
Eclipse XDB C18-UPLC column at 40 °C with a flow rate of 0.4 mL min-1. The LC/MS-MS
gradient solutions (water (A) and methanol (B)) contained 0.006 % acetic acid (v/v) and 5
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mM HCOONH4. The gradient for microcystin separation was 0–2 % B, 0–1.5 min; 2–50 % B,
1.5–5 min; 50–70 % B, 5–8 min; 70 % B, 8–13 min; 0 % B for re-equilibration. The ESI+
multiple reaction monitoring transitions were m/z 519.8→135.0 and 239.1 (Microcystin-RR),
m/z 995.6 →135.0 and 861.0 (Microcystin-LR) and 1045.5→ 135 and 174.0 (Microcystin-
YR). The limit of quantification was 10 ng L-1 for each microcystin.
2.5 Lifespan assay
30 L4 larvae were transferred to NGM plates dosed with DBAA, TBBP, MC-LR, two-fold
concentrated water samples, or MC-BA, respectively, according to section 2.2 and table 1. A
total of 200 L4 larvae per treatment of the following generation (F1) were transferred onto ten
treatment plates and surviving and dead animals were counted daily until all individuals had
died. Nematodes that failed to respond to contact stimuli were considered to be dead.
Nematodes suffering from internal hatch and those that escaped from the NGM agar were
censored. Adult nematodes were regularly transferred to new treatment plates. Each lifespan
assay was performed at least two times. Statistical significance for alterations in the mean life
span was calculated using a log-rank test (Bioinformatics at the Walter and Eliza Hall
Institute of Medical Research; http://bioinf.wehi.edu.au/software/ russell/logrank).
2.6 Thermal stress resistance and body length
50 L4 larvae (F1) were randomly selected and transferred daily to fresh treatment plates. At
the sixth day of adulthood, treated and untreated nematodes were moved either to 35 °C for
6.5 h and surviving and dead nematodes were counted thereafter (thermal stress test), or to 45
°C for 2.5 h and subsequently sized by means of a digital Microscope at 100-fold
magnification (body length test). Statistical significance was calculated via the Student’s t-test
(SigmaStat 3.5; SPSS Inc., USA). Each concentration was tested in at least three trials.
2.7 Brood size
L4 larvae (F1) were transferred individually to treatment plates and moved to a fresh plate
each day until reproduction was completed at the fourth day of adulthood. The number of
offspring per individual animal was counted daily. Statistical significance was calculated via
the Student’s t-test (SigmaStat 3.5; SPSS Inc., USA). Three trials were performed with 10
nematodes per concentration in each trial.
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2.8 Gene expression profiling
2.8.1 RNA preparation
Young adult nematodes were treated with sodium hypochlorite (Sigma, Germany) according
to Strange et al. (2007). The obtained eggs were transferred to plates containing the respective
test substance and incubated at 20 °C. At the first day of adulthood the animals were
harvested by rinsing off with M9 buffer, washed at least three times, shock frozen in liquid
nitrogen and stored at -80 ̊C. For each condition, samples were cultivated in triplicate. The
samples were milled with 0.5 mm glass beads in a homogenizer (SpeedMill Plus, Analytik
Jena, Germany) and thereafter the RNA was extracted using the innuSPEED Tissue RNA kit
(Analytik Jena, Germany). The quality of the extracted RNA was examined by gel
electrophoresis and the quantity with a Spectrophotometer (NanoDrop 2000, Thermo
Scientific, USA). The RNA was stored at -80 °C and was used for the microarray as well as
the qRT-PCR experiments.
2.8.2 DNA Microarray
RNA was amplified with the MessageAMP™Premier RNA Amplification Kit (Ambion,
USA) which relies on the T7 in vitro transcription (IVT) amplification technology. First- and
second-strand cDNA synthesis, cRNA synthesis, labeling, fragmentation, chip hybridization,
and scanning were performed according to the manufacturer’s specifications (Affymetrix,
USA). The whole genome microarray chip (GeneChip C. elegans Genome Array, Affymetrix,
USA) contains more than 22,500 transcripts from C. elegans. Three chips as well as three
RNA samples were used per condition (biological replicates). No technical replicates were
performed; however, each gene is represented by approximately 11 different probe sequences
on the chip. The quality and quantity of the RNA, cDNA, and cRNA were assessed via
capillary electrophoresis (Bioanalyzer 2100, Agilent Technologies, UK) and via
spectrophotometry (NanoDrop 2000, Thermo Scientific, UK).
The transcription expression values were pre-processed with the MAS5 algorithm
(Affymetrix Expression Console 1.2.0.20). After background correction, probe set
summarization and CHP file generation, the expression signals were normalized using the
relative median over all genes algorithm (BRB-ArrayTools 4.3.0). Spots with spot intensities
below the minimum signal value of 10 were excluded. Differentially expressed genes (DEGs)
were identified with a random-variance t-test and a SAM (Significance Analysis of
Microarrays) test. Genes were considered statistically significant if their p-value was less than
0.05, the false discovery rate less than 0.3 and the fold change compared to control at least
≤0.67 or ≥1.5. The cut-offs were chosen according to the previously published microarray
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data with DBAA, TBBP and MC-LR (Saul et al., 2014a, 2014b) which facilitates the
comparison between the array results. Indeed, Dalman et al. (2012) highlighted that altered
cut-offs can lead to different results and should be uniformly chosen when datasets are
compared. To perform the GO Term analysis, the DEGs were processed with the Database for
Annotation, Visualization and Integrated Discovery (DAVID 6.7) (Huang et al. 2009a,
2009b).
2.8.3 qRT-PCR
The M-MLV (Moloney Murine Leukemia Virus) reverse transcriptase (Promega, USA) was
used to synthesize the cDNA at 42 °C for 90 minutes. The quantitative Real-Time Polymerase
Chain Reaction (qRT-PCR) was performed with the BIORAD MyiQ iCycler (BIORAD,
Germany) and the qRT-PCR Green Core Kit (Jena Bioscience, Germany). All expression
levels were normalized with the qRT-PCR values of the reference genes act-1 and cdc-42 and
the quality of the PCR product was evaluated via gel electrophoresis. Significant changes
(compared to the control) were determined by means of a Student’s t-test. Genes were
considered statistically significant if their p-value was less than 0.05 and the fold change
compared to control at least ≤0.67 or ≥1.5. qRT-PCR was performed to verify the quality of
the microarray data. The efficiency of each primer pair, the primer sequences, the annealing
temperatures, and the results of the qRT-PCR trials are shown in Online Resource 1.
3. Results and Discussion
3.1 Exposure to water samples and MC-BA affects only marginally the lifespan and
stress resistance of nematodes
In August, September, and October 2010, water from two lakes (Stößensee and Tegeler See,
both in Berlin, Germany) were sampled, filtered and lyophilized. Nematodes were exposed to
a two-fold concentrated sample of the respective lake waters. The M. aeruginosa batch culture
(MC-BA) was filtered and the nematodes were cultivated in 10 %, 20 %, or 40 % of MC-BA.
Table 1 summarizes the AOBr and microcystin contents in each sample.
The lifespan was monitored in nematodes exposed to the water samples and to the single
organobromines (DBAA and TBBP) and MC-LR. Neither the surface water samples from
Lakes Stößensee and Tegeler See nor the MC-BA samples triggered a change of mean
lifespan in C. elegans (Fig. 1). The final concentrations of AOBr in the surface water and
MC-BA spiked plates ranged from 10 µg/L to 40 µg/L, thus resembling the concentrated
organobromine plates spiked with 22 µg/L and 54 µg/L DBAA or TBBP, respectively. The
elevated levels of 11 mg/L and 27 mg/L can only be found in extreme environments, such as
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in industrial or hospital waste waters (Furhacker et al. 2000; Kummerer 2001; Shomar 2007).
Interestingly, low concentrations of TBBP prolonged the lifespan of C. elegans, whereas high
concentrations elicited a decrease in lifespan, which is in line with the hormesis effect. In
contrast, only the elevated concentrations of DBAA prolonged the lifespan of nematodes. The
DBAA and TBBP results were drawn from an extensive concentration-dependent lifespan
analysis (Saul et al., 2014a).
Exposure to 100 and 300 µg/L MC-LR resulted in a reduction of lifespan (partly published in
Saul et al., 2014b). The 40 % MC-BA sample comprises of about 130 µg/L MC-LR and 300
µg/L total measured microcystins, therefore it was surprising that the MC-BA exposure did
not mirror the toxicity observed in MC-LR exposed nematodes. It is conceivable that other
cyanobacterial exudates moderate the harmful effects caused by microcystins. Given that the
two organobromines tested here induce some degree of life-extension, suggests that
organobromines may, at least in part, be responsible for this attenuation. Since DBAA and
TBBP represent only a small fraction of all possible organobromines, it cannot be excluded
that the organobromines in the MC-BA filtrate act in a different way. TBBP is a brominated
flame retardant which occurs in sewage treatment plants and freshwater sediments (Law et al.,
2006), but there is no suggestion that it is also part of the AOBr pool tested here. However,
Hütteroth (2006) analyzed the AOBrs in the Berlin lakes Wannsee and Tegeler See by menas
of GC-MS (gas chromatography-mass spectrometry) and detected, amongst others, DBAA.
The lifespan trials were conducted in laboratory controlled conditions, however in nature
nematodes frequently encounter additional stressors, for example thermal stress. Most
exposure scenarios did not influence the resistance to thermal stress, however one water
sample from Tegeler See enhanced the resistance significantly. Furthermore, though
statistically not significant, exposure to 40 % MC-BA induced a marginal decrease in survival
and the 54 µg/L TBBP exposure group was marked by a slight increase (Fig. 2). The thermal
stress test of TBBP and DBAA was previously published in Saul et al. (2014a).
3.2. Exposure to MC-BA increases nematode growth and brood size
Whilst low concentrations of MC-LR and TBBP and also the DBAA exposures did not
influence the reproductive performance of C. elegans, elevated concentrations of MC-LR and
TBBP suppressed the reproductive output (Fig. 3 and partly presented in Saul et al. 2014a,
2014b). Therefore, it was again surprising to note that the 40 % MC-BA exposure scenario
stimulated reproductive output. The microcystins within the MC-BA sample were seemingly
not able to induce a reproductive toxicity. Which constituents of the batch culture were
responsible for this effect is, at present, not known, but the organobromines tested here did
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not enhance the reproductive outcome.
The measurement of the body length revealed similar results, namely that the 40 % MC-BA
exposure increased the size of the worms significantly and that MC-LR led to a decrease in
the size. Only the higher DBAA concentration elicited a response which was similar in
magnitude to the MC-BA effect (Fig. 4 and partly presented in Saul et al. 2014a, 2014b).
In previously performed neurotoxicity assays, the impact of MC-LR, DBAA, TBBP, the
Stößensee lake samples, as well as the MC-BA filtrate (40%) on autonomic (locomotion,
pharynx pumping frequency, and defecation) and sensory (thermal, chemical, and mechanical
sensory perception) functions were measured (Ju et al., 2014a, 2014b; Lieke et al., 2015). It
was shown that 50 µM TBBP had an impact on three neurological functions (locomotion,
defecation, and chemical sensory) and thus, can be classified neurotoxic whereas 50 µM
DBAA led to neurostimulation of two autonomic functions (locomotion and pumping
frequency) and only exerted a temporary impact on the defecation interval. Similar
stimulations were also found for 0.1 µM TBBP which suggests the presence of an hormetic
effect. Furthermore, MC-LR impacted locomotion, pumping, and mechanical behaviour
whereas MC-BA displayed a lesser degree of neurotoxic action (only a temporarily impact in
thermotactic behaviour) but rather neurostimulation concerning autonomic functions. These
observations align well with the bioassay results (Figure 1, 3, and 4) which uncovered
stimulating activities for DBAA and MC-BA and adverse effects for MC-LR and TBBP.
Furthermore, the October sample of lake Stößensee increased locomotion and the pharynx
activity (Ju et al., 2014a). However, these stimulating activities are not reflected in the
lifespan, growth, stress resistance or reproduction assay (Figure 1-4). This indicates that the
behavioural assays might be more sensitive compared to the standard bioassays.
3.3 Global transcriptomics (microarrays) highlight metabolic and neurological changes
in MC-BA treated nematodes
Young (treated and untreated) adult nematodes were harvested and the global gene expression
changes were determined by means of a whole genome DNA-microarray. In total, 1266
transcripts were shown to be down-regulated and 761 up-regulated following an exposure to
40 % MC-BA and a GO Term analysis of these DEGs revealed that 45 GO Terms were over-
represented, including several metabolic and morphological processes (Table 3). The affected
GO terms in the “Cellular Component” group are all related to membrane constituents and
they are also overrepresented in nematodes exposed to DBAA, TBBP and MC-LR (Saul et al.
2014a, 2014b). However, there are no further GO term matches between MC-LR and MC-BA
treated nematodes. A closer look reveals that several abu-genes (activated in blocked
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unfolded protein response) were down-regulated (Table 4). Given that these proteins are
known to be induced during stress (Urano et al. 2002), suggests that the observed down-
regulation may reflect the stress-protective effect of MC-BA. On the other hand, the up-
regulation of several cyp-genes (cytochrome P450 family), known for their role in the
metabolism of xenobiotics (Menzel et al. 2001, 2005; Ioannides 2008), implies an increase in
chemical stress. A similar pattern was recently described by Peltonen et al. (2013) who
describe that chronic alcohol exposure can lead to the repression of several abu-genes and the
induction of cyp-genes in C. elegans. Whether this represents a hallmark expression pattern
characteristic of chronic stress exposure warrants further investigations.
In addition, numerous neurological and signaling processes were modulated (Table 3). The
GO Terms related to the neurotransmitter transport, the phosphorylation/dephosphorylation
processes, the response to temperature stimuli, and the locomotory behaviour are essential for
the process and response to stimuli from the environment. Numerous unc-genes
(UNCoordinated) were shown to be differentially (up and down) regulated in MC-BA
exposed worms (Table 4).
To verify the quality of the microarray data, five genes were also tested in a qRT-PCR assay.
gur-3, hen-1, unc-17, and unc-30 were chosen since they are differentially expressed in MC-
BA as well as in MC-LR (gur-3, hen-1, unc-30; Saul et al., 2014b), TBBP (unc-17, unc-30;
Saul et al., 2014a) and/or DBAA (hen-1, unc-17; Saul et al., 2014a) exposed nematodes. The
microarray data of these genes match the results obtained by qRT-PCR (Online Resource 1).
Moreover, sma-2 was chosen due to its up-regulation by MC-BA and its involvement in body
length regulation (Morita et al., 1999). Since MC-BA (40%) treated nematodes displayed an
increase body length, the up-regulation of sma-2 might be linked. Indeed, the up-regulation of
sma-2 was also observed via qRT-PCR, however, the significance limit was not reached
(Online Resource 1).
Interestingly, numerous behaviour, metabolism and transport related genes, which were also
influenced by MC-BA (Table 3), were also differentially regulated when exposing C. elegans
to the organochlorine contaminant octachlorostyrene (Kim and Choung, 2009) or to
organochlorine-rich river sediments (Menzel et al., 2009). However, only 12 of the 45 MC-
BA-affected GO Terms and only a few abu and cyp genes were affected by these river
sediments. Comparisons of the GO-Terms influenced by 50 µM TBBP and DBAA and the
Elbe river sediments revealed similar results (Saul et al., 2014a, 2014b). However, since
studies with organochlorines in environmental realistic concentrations are rare in C. elegans,
it is challenging to compare these results.
The transcriptome analysis of nematodes exposed to the Stößensee derived surface water
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sample identified only few DEGs. The water sample taken in August repressed 13 genes and
induced 128 genes, including three cyp-genes. Likewise, only one transcript was down-
regulated and 33 genes up-regulated by the October sample (Online Resource 2). The water
sample taken in August only affected GO Terms linked to cell signaling processes (Table 5),
which were all also significantly affected in nematodes challenged with MC-LR, DBAA and
TBBP (Saul et al. 2014a, 2014b), but not by MC-BA.
Table 3: GO Terms of MC-BA influenced DEGs
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GO Term DEGs (n)
% of total DEGs P-Value
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Bio
logi
cal p
roce
ss
GO:0043687 post-translational protein modification 109 5.43 7.20E-13GO:0006464 protein modification process 114 5.68 3.13E-11GO:0043412 biopolymer modification 116 5.78 8.85E-11GO:0006793 phosphorus metabolic process 107 5.33 1.21E-10GO:0006796 phosphate metabolic process 107 5.33 1.21E-10GO:0006468 protein amino acid phosphorylation 74 3.69 1.74E-08GO:0006470 protein amino acid dephosphorylation 29 1.44 1.92E-06GO:0016311 dephosphorylation 30 1.49 2.65E-06GO:0016310 phosphorylation 76 3.79 2.91E-06GO:0019538 protein metabolic process 169 8.42 3.24E-04GO:0040002 collagen and cuticulin-based cuticle development 19 0.95 4.97E-04GO:0007592 protein-based cuticle development 19 0.95 6.58E-04GO:0042335 cuticle development 19 0.95 6.58E-04GO:0044267 cellular protein metabolic process 125 6.23 0.00646GO:0009266 response to temperature stimulus 10 0.50 0.01147GO:0010171 body morphogenesis 66 3.29 0.01677GO:0006836 neurotransmitter transport 9 0.45 0.01908GO:0040032 post-embryonic body morphogenesis 4 0.20 0.03624GO:0007626 locomotory behavior 9 0.45 0.03663GO:0009409 response to cold 3 0.15 0.03968GO:0006631 fatty acid metabolic process 9 0.45 0.04597GO:0005976 polysaccharide metabolic process 9 0.45 0.04597GO:0044036 cell wall macromolecule metabolic process 4 0.20 0.04853GO:0016998 cell wall macromolecule catabolic process 4 0.20 0.04853
Cel
lula
r co
mpo
nent GO:0016021 integral to membrane 721 35.92 7.42E-13
GO:0031224 intrinsic to membrane 722 35.97 7.53E-13GO:0044425 membrane part 731 36.42 4.84E-12GO:0016020 membrane 740 36.87 8.06E-11
Mol
ecul
ar fu
nctio
n
GO:0042302 structural constituent of cuticle 64 3.19 8.56E-25GO:0005198 structural molecule activity 102 5.08 4.02E-15GO:0004674 protein serine/threonine kinase activity 73 3.64 9.17E-07GO:0004721 phosphoprotein phosphatase activity 38 1.89 3.27E-06GO:0004672 protein kinase activity 74 3.69 6.27E-06GO:0004725 protein tyrosine phosphatase activity 28 1.40 1.38E-05GO:0042578 phosphoric ester hydrolase activity 48 2.39 1.40E-05GO:0016773 phosphotransferase activity, alcohol group as acceptor 78 3.89 5.55E-05GO:0016791 phosphatase activity 42 2.09 5.84E-05GO:0004713 protein tyrosine kinase activity 56 2.79 2.49E-04GO:0016301 kinase activity 79 3.94 3.87E-04GO:0016772 transferase activity, transferring phosphorus-containing groups 84 4.19 0.00356GO:0016788 hydrolase activity, acting on ester bonds 64 3.19 0.00456GO:0015294 solute:cation symporter activity 9 0.45 0.03207GO:0005326 neurotransmitter transporter activity 6 0.30 0.03933GO:0015370 solute:sodium symporter activity 7 0.35 0.04964GO:0016290 palmitoyl-CoA hydrolase activity 3 0.15 0.04999
Table 4: Selected DEGs in MC-BA treated nematodesDown-regulated gene-classes and genesabu (Activated in Blocked Unfolded protein response):
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abu-1, abu-6, abu-7, abu-8, abu-9, abu-10, abu-11, abu-13, abu-14, abu-15clec (C-type LECtin):clec-2, clec-3, clec-4, clec-47, clec-57, clec-62, clec-72, clec-73, clec-79, clec-92, clec-95clec-123, clec-138, clec-156, clec-158, clec-175, clec-180, clec-193, clec-203, clec-214, clec-216, clec-228col (COLlagen):col-38, col-39, col-41, col-48, col-49, col-60, col-62, col-63, col-65, col-71, col-73, col-77, col-79, col-84, col-88, col-90, col-91, col-97, col-102, col-104, col-107, col-109, col-111, col-113, col-118, col-120, col-126, col-130, col-137, col-138, col-139, col-14, col-141, col-145, col-147, col-148, col-149, col-150, col-156, col-158, col-161, col-166, col-167, col-175, col-180, col-186dpy (DumPY: shorter than wild- type): dpy-2, dpy-3, dpy-5, dpy-8, dpy-9grl (GRound-Like (grd related)): grl-5, grl-7, grl-10, grl-16, grl-21, grl-23, grl-27lgc (Ligand-Gated ion Channel): lgc-21, lgc-27, lgc-33, lgc-51, lgc-54nhr (Nuclear Hormone Receptor family):nhr-8, nhr-45, nhr-50, nhr-51, nhr-106, nhr-115, nhr-123, nhr-156, nhr-188, nhr-195pqn (Prion-like-(Q/N-rich)-domain-bearing protein):pqn-13, pqn-26, pqn-29, pqn-32, pqn-54, pqn-60, pqn-62, pqn-63, pqn-66, pqn-72, pqn-74, pqn-84, pqn-94snf (Sodium: Neurotransmitter symporter Family): snf-2, snf-4, snf-5, snf-9, snf-11srh (Serpentine Receptor, class H):srh-7, srh-49, srh-59, srh-109, srh-182, srh-183, srh-222, srh-239, srh-271, srh-301str (Seven TM Receptor): str-9, str-19, str-109, str-159, str-166ugt (UDP- GlucuronosylTransferase): ugt-2, ugt-19, ugt-21, ugt-50, ugt-62unc (UNCoordinated): unc-11, unc-17, unc-22, unc-31, unc-42, unc-43, unc-129Up-regulated gene-classes and genesclec (C-type LECtin ):clec-21, clec-22, clec-27, clec-82, clec-128, clec-135, clec-190, clec-210, clec-211, clec-241cyp (CYtochrome P450 family):cyp-14A3, cyp-25A1, cyp-33C7, cyp-33D1, cyp-34A10, cyp-34A7, cyp-34A9, cyp-35A3, cyp-35C1fbxa (F-box A protein): fbxa-18, fbxa-103, fbxa-130, fbxa-141, fbxa-213, fbxa-214fbxb (F-box B protein): fbxb-6, fbxb-9, fbxb-20, fbxb-22, fbxb-38, fbxb-47, fbxb-49, fbxb-59, fbxb-74, fbxb-85, fbxb-90, fbxb-98, fbxb-100, fbxb-102, fbxb-105, fbxb-107gcy (Guanylyl CYclase): gcy-2, gcy-4, gcy-19, gcy-25, gcy-33nhr (Nuclear Hormone Receptor family):nhr-2, nhr-15, nhr-25, nhr-82, nhr-118, nhr-126, nhr-162, nhr-185, nhr-211, nhr-221, nhr-236, nhr-255, nhr-281sre (Serpentine Receptor, class E (epsilon)): sre-8, sre-29, sre-32, sre-40, sre-52, sre-53srg (Serpentine Receptor, class G (gamma)): srg-4, srg-37, srg-44, srg-58, srg-61, srg-68srh (Serpentine Receptor, class H): srh-20, srh-32, srh-35, srh-37, srh-55, srh-67, srh-70, srh-73, srh-115, srh-128, srh-136, srh-140, srh-194, srh-200, srh-203, srh-243, srh-247, srh-251, srh-265sri (Serpentine Receptor, class I): sri-4, sri-28, sri-50, sri-54, sri-73srj (Serpentine Receptor, class J): srj-16, srj-19, srj-25, srj-37, srj-42, srj-49srw (Serpentine Receptor, class W): srw-23, srw-33, srw-38, srw-43, srw-55, srw-83, srw-96, srw-97, srw-100, srw-101, srw-112, srw-136srx (Serpentine Receptor, class X):srx-19, srx-21, srx-33, srx-38, srx-51, srx-64, srx-67, srx-85, srx-104, srx-128srz (Serpentine Receptor, class Z): srz-12, srz-20, srz-23, srz-53, srz-58, srz-64, srz-79, srz-103str (Seven TM Receptor):str-4, str-20, str-39, str-45, str-66, str-78, str-89, str-119, str-122, str-130, str-141, str-145, str-169, str-170, str-188, str-193, str-198, str-217, str-236, str-244, str-250, str-255unc (UNCoordinated): unc-2, unc-26, unc-30, unc-43, unc-49, unc-58, unc-61
Table 5: GO Terms of influenced DEGs by Lake Stößensee samples
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GO Term DEGs (n)
% of total DEGs P-Value
August 2010
MFGO:0004872 receptor activity 16 11.76 0.01632GO:0004871 signal transducer activity 16 11.76 0.02848GO:0060089 molecular transducer activity 16 11.76 0.02848
October 2010MF GO:0016782 transferase activity, transferring sulfur-containing groups 2 5.88 0.03299
MF: molecular function
4. Conclusion
The water samples from the Stößensee contained up to 18 µg/L AOBr. But even two-fold
concentrated samples did not induce a toxic response in nematodes. In contrast, water taken
from the Tegeler See in September was able to enhance survival during thermal stress. At the
molecular level, which is arguably more sensitive than a life-cycle endpoint, only few genes
and GO Terms were affected by the lake water samples. MC-BA samples triggered
‘beneficial’ growth and brood size changes in C. elegans. Several hundred transcripts were
shown to be influenced by the exposure to MC-BA, however the up-regulation of cyp- and the
down-regulation of abu-genes may reflect some level of chronic stress. Moreover, several GO
Terms associated with metabolic and neurological processes were affected by MC-BA, but no
significantly adverse effects were observed in the life traits measured. Surprisingly, the
transcript expression pattern of MC-LR exposed nematodes was not mirrored in the MC-BA
transcripts. It is likely that the effects of MC-LR and MC-BA differed due to hitherto
unidentified compounds in the filtrate. These compounds could be responsible for the up-
regulation of several cyp-genes which could be able to detoxify the microcystin. This
assumption is underlined by Li et al. (2013) who deduced that CYPs are responsible for the
detoxification of microcystins in zebrafishes. Given that the exposure to TBBP induces two
cyp-genes (Saul et al. 2014a), suggests that the organobromines in the filtrate may act as the
cyp-inducers. C. elegans is one of the most popular invertebrate model organism with a vast
availability of biomolecular data. Being native to a compost heap might suggest that it is less
suited for aquatic studies. However, C. elegans occupies the interstitial space between
particles filled with water and can also be found in freshwater habitats (Hirschmann, 1952;
Andrassy, 1984; Zullini, 1988). Indeed, it was demonstrated that C. elegans is a suitable test
organism for freshwater sediment bioassays (Höss et al., 1999) and for aquatic toxicity tests
(Ura et al., 2002). Moreover, the uptake mechanisms of xenobiotics in C. elegans comprise
three different exposure routes: ingestion, uptake through the skin, and uptake via sensory
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neuronal endings (Kaletta and Hengartner, 2006) which assures the uptake of the test
substances.
Nevertheless, to underpin the results of this study, more frequent aquatic nematodes such as
members of the Monhysterida and Plectida or of the subclass Chromadoria (Abebe et al.,
2008) or the well-studied cladoceran Daphnia magna (Martins et al., 2007) should be tested
in future studies (if sufficient quantities of test substances are available). Having said that, it is
apparent that the standard C. elegans plate assay appears remains an attractive option when
testing newly emerging contaminants and early evaluation of biological effects.
The results presented here suggest that AOBrs in aquatic samples may not be as toxic as
originally assumed, and that the exposure to low levels of organobromines may buffer the
effect of other toxins, at least within the studied nematode.
5. Acknowledgement
This research was supported by the Deutsche Forschungsgemeinschaft (DFG) grants STE
673/18, ME 2056/3 (RM), and PU 199/6-1 and King’s College London (SRS). Furthermore,
we thank the Caenorhabditis Genetics Centre, which is funded by the National Institutes of
Health National Centre for Research Resources, for the supply of the Caenorhabditis elegans
strains and the King’s College London Genomics Centre for their support and access to
microarray facilities. We declare that there is no conflict of interests and that the experiments
comply with the current laws of the countries where the experiments were conducted.
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Figure legends
Fig. 1
The percentage change of mean lifespan compared to the untreated control during exposure to
the lake samples, the M. aeruginosa batch culture, two single organobromines and
microcystin-LR is shown. Each bar represents the mean of two to four trials with a total of at
least 188 nematodes per concentration. The error bars represent the standard error of the mean
and differences are considered significant with ** p < 0.001.
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Fig. 2
The survival (in percent) following a thermal stress of 35°C for 6.5 hours was monitored.
Each bar represents the mean of three to five trials with a total of at least 124 nematodes per
concentration. The error bars represent the standard error of the mean and differences are
considered significant with * p < 0.05.
Fig. 3
The reproductive output was assessed over three trials with a total of 30 nematodes per
concentration. Each bar represents the mean of the three trials and the error bars represent the
standard error of the mean. Differences are considered significant with * p < 0.05 and ** p <
0.001.
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Fig. 4
The body length of the nematodes was measured at the sixth day of adulthood in three to four
independent trials with a total of 81-156 nematodes per concentration. Each bar represents the
mean of the trials and the error bars represent the standard error of the mean. Differences are
considered significant with * p < 0.05 and ** p < 0.001.
24