quantum mechanical prediction of the existence of rare gas-bound species katheryn shi 1, brent...
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Quantum Mechanical Prediction of the Existence
of Rare Gas-bound Species
Katheryn Shi1, Brent Wilson2, Angela K. Wilson3
1 TAMS, University of North Texas2 Department of Chemistry, University of North Texas
3 Faculty Mentor, Department of Chemistry, University of North Texas
IntroductionComputational chemistry: combines math, chemistry,
and computer science to solve chemical problems
Computational chemistry may be used where laboratory work is impracticalDangerous compoundsMolecules difficult to isolate
Trying to solve the Schrödinger equation and obtain properties (e.g. optimal geometries, vibrational frequencies, charge distributions, dissociation energies, etc.)
IntroductionHΨ=EΨ – Schrödinger Equation
H – Hamiltonian OperatorΨ – Wave functionE – Eigenvalue (energy)
ˆ ˆ ˆ ˆˆ ˆe n ne nn eeH T T V V V= + + + +
IntroductionBefore the 1960’s, rare gases (noble
gases)were considered inert.
XePtF6 was synthesized by Neil Bartlett in 1962*, opening a new area of exploration
More recently, organic rare gas compounds have been prepared (HXeCCH†, HXeCC†, HKrCCH, etc.)
*Bartlett, N. "Xenon hexafluoroplatinate Xe+[PtF6]?" Proceedings of the Chemical Society of London. 1962: 218.
†Khriachtchev, Leonid, Hanna Tanskanen, Jan Lundell, Mika Pettersson, Harri Kiljunen, and Markku Räsänen. "Fluorine-Free Organoxenon Chemistry: HXeCCH, HXeCC, and HXeCCXeH." J. Am. Chem. Soc.. 125 (16) (2003): [4696–4697 ].
Method versus Basis Set
Hartree-FockDFT
MP2 CISDCCSD
QCISD(T)CCSD(T)
MP4 Full CI
“Exact”solution to
H=E
Bas
is S
et S
ize
Method
DZ
TZ
QZ
5Z
6Z
∞
MethodologyB3LYP
Type of density functionalTotal energy expressed as a function of electron
densityNot wave function based
Second-order Møller-Plesset perturbation theory (MP2) Begins with Hartree Fock calculation and adds in
energy to account for electron correlation
Methodology
Basis setsSet of functions representing atomic orbitalsUsed to describe the character of the electrons
in atoms or molecules
Correlation consistent basis setsaug-cc-pVnZ (n = D, T, Q)Designed to systematically recover correlation
energy with increase in size
ProcedureGeometry
OptimizationsTry to find a
minimum on the potential energy (PE) surface
Frequency CalculationsMake sure there are
no imaginary frequencies to confirm PE minimum
Procedure
Start with B3LYPLess computationally expensiveFalse positives
Check molecules that converged using B3LYP with more sophisticated methods, such as MP2 and CCSD(T)
Molecules Tested HArN HKrN ArCAr ArCCAr ArCCCAr FArKr FKrAr FKrN HArCCCN HArKr HArO HeCCHe HKrAr HKrCCCN
HKrKr HKrNe HKrS HKrSe KrCCCKr KrCCKr HArBr HArCl HCCKrN NKrCCCN FArCCCN FKrCCCN FArCCArCCArF FKrCCKrCCCKrCCK
rF
BrKrCCKrBr BrKrGeGeKrBr ClArCArCCCArCAr
Cl ClArCCArCl ClArCCCArCl ClKrPPKrCl ClNeCCCNeCl HCCArN NArCCCN HArP ClArCCArCCArCl ClArSiSiArCl FArN FKrCKrCCCKrCKrF
Molecules Tested FKrKrCCCKrKrF FNeCCCNeF HArCCCCN HArCCN HCArN HCCCArN HCCCKrN HCKrN KrCKr NArCCCCN NKrCCCCN ClKrCCKrCl ClNeCCNeCCNeCl ClNeCCNeCl
HeCHe HKrCCCCCN HKrCCCCN HKrCCKrH HKrCCN HKrO Br(CKr)6
HArAs HKrP Kr(CH)6
Kr(CO)6
Kr2SO4
Kr4SO4
ClNeCNeCCCNeCNeCl
FArCCArF FArCCCCCN FKrCCCCCN FKrCCKrCCKrCCKrF FKrCCKrCCKrF FKrS FKrSiCKrF FKrSiSiKrF FNeCCNeCCNeF FNeCCNeF FNeCNeCCCNeCNe
F HArCCCCCN HeCCCHe
ResultsHArN HKrN
Method Basis Set H–Ar Ar–N H–Kr Kr–N
B3LYP aug-cc-pVnZ
n = D 1.283 2.140 1.426 2.163n = T 1.578 2.220 1.419 2.135n = Q 1.566 2.208 1.664 2.240
MP2 aug-cc-pVnZ
n = D 1.271 2.196 1.409 2.215n = T 1.259 2.108 1.399 2.131n = Q 1.258 2.087 1.400 2.108
CCSD(T) aug-cc-pVnZ
n = D 1.297 2.261 1.452 2.294n = T 1.272 2.185 1.425 2.220n = Q 1.270 2.165 1.425 2.202
Conclusions
HArN and HKrN were predicted to be stableFrequency calculations indicated the
geometries were minimum energy pointsBond lengths converged with increasing basis
set sizeBond length analysis indicated covalent
properties
Contain nitrogen - unique
Interest in noble gas molecules due to laser action354nm laser discovered using XeF in 1975
Applications
ApplicationsHArN and HKrN were predicted to be stable
MedicineAnti-tumor agentsLaser eye surgery
IndustryExcimer lasers for semiconductor
manufacturing
AcknowledgementsProf. Angela WilsonBrent WilsonDr. Mike
DrummondDr. Jamal UddinDr. Wanyi JiangThe Wilson Group
National Science Foundation
Department of Education (CASCaM)
National Center for Supercomputing Applications
University of North TexasFaculty Research GrantAcademic Computing
Services for UNT Research Cluster
Texas Academy of Mathematics and Science