Publications by HHMI-Sponsored Undergraduate Researchers

By Department and Lab at the University of Delaware 1999-2012

Department of Biological Sciences

Dr. Kamil Akanabi

Brian Jensen, Mary C. Farach-Carson, Erin Kenaley, and Kamil A. Akanbi, (2004) High

Extracellular Calcium Attenuates Adipogenesis in 3T3-L1 Preadipocytes, Exp Cell Res.

301:280-92

Dr. Daniel Carson

Catherine B. Kirn-Safran, Daniel S. Oristan, Richard J. Focht, Shaila G. Parker, Jay L.

Vivian, and Daniel D. Carson (2007) Global Growth Deficiencies in Mice Lacking the

Ribosomal Protein HIP/RPL29, Developmental Dynamics 236, 447-460.

Dr. Mary C. Farach-Carson

Ronald R. Gomes, Sonali S. Joshi, Mary C. Farach-Carson (2006) Ribozyme-Mediated

Perlecan Knockdown Impairs Chondrogenic Differentiation of C3H10T1/2 Fibroblasts.

Differentiation, 74(1):53-63.

Laura G. Sloofman , Verdelis K, Spevak L, Zayzafoon M, Yamauchi M, Opdenaker

LM, Farach-Carson MC, Boskey AL, Kirn-Safran CB. (2010) Effect of HIP/ribosomal

protein L29 deficiency on mineral properties of murine bones and teeth. Bone 47: 93-101.

Drs. Carlton Cooper and Robert Sikes

Robert A. Sikes, Carlton R.Cooper, G. L.Beck, Freddie Pruitt, M. L. Brown, and G.

Balian (2004) Bone stromal cells as therapeutics targets in osseous metastasis. 2005.

Chapter 21, pp. 369-386, In: Cancer Growth and Progression, Volume 15,

"Integration/Interaction of Oncologic Growth." Ed. Gary Meadows, Series Ed. Kaiser H.,

Kluwer Academic Publishers, Boston, MA.

Robert A. Sikes, Carlton R. Cooper, G. L. Beck, Freddie Pruitt, M. L. Brown, and G.

Balian (2005) Bone stromal cells as therapeutics targets in osseous metastasis. Chapter

21, pp. 369-386, In: Cancer Growth and Progression, Volume 15, "Integration/Interaction

of Oncologic Growth." Ed. Gary Meadows, Series Ed. Kaiser H., Kluwer Academic

Publishers, Boston, MA

Dr. Patricia A. Martin-DeLeon

Patricia A. Martin-DeLeon, L. Canaff, R. Korstanje, V. Bhide, Maryanne Selkirk, G.

N. Hendy (1999). Rabbit Calcium-sensing Receptor (CASR) Gene: Chromosomal

Localization and Evidence for Related Genes. Cytogenet. Cell Gen. 86: 252-258.

Eric A. Evans, Hong Zhang, and Patricia A. Martin-DeLeon, (2003) SPAM1 (PH-20)

protein and mRNA expression in the epididymides of humans and macaques: utilizing

laser mircodissection/RT-PCR. Reprod. Biol. Endocrinol. 1:54.

Hong Zhang, Stacy Shertok, Kimberly Miller, Taylor L., Martin-DeLeon, P. A. (2005)

Sperm Dysfunction in the Rb(6.16)- and Rb(6.15)-bearing mice revisited: Involvement of

Hyalp1 and Hyal5. Mol. Reprod. Dev. 72(3):404-10.

Kimberly A. Miller, Minghai Shao, and Patricia A. Martin-Deleon (2007) Hyalp1 in

Murine Sperm Function: Evidence for Unique and Overlapping Functions with Other

Reproductive Hyaluronidases. J Androl. 28, 67-76.

Geneveve S. Griffiths, Kimberly A. Miller, M. Shao, Deni S. Galileo, Patricia A.

Martin-DeLeon (2007) SPAM1 is secreted by the estrous murine uterus and oviduct in a

form which can bind to sperm during capacitation: Acquisition enhances HA-binding

ability and cumulus penetration efficiency. Reproduction In press.

Geneveve S. Griffiths, Kristin L. Reese, Deni S. Galileo, Patricia A. Martin-DeLeon

(2008) Investigating the role of Murine Epididymosomes and Uterosomes in GPI-linked

protein transfer to sperm using SPAM1 as a model. Mol Reprod Dev. 75(11), 1627-36.

Reese KL, Aravindan RG, Griffiths GS, Shao M, Wang Y, Galileo DS, Atmuri V,

Triggs-Raine BL, Martin-Deleon PA (2010). Acidic hyaluronidase activity is present in

mouse sperm and is reduced in the absence of SPAM1: evidence for a role for

hyaluronidase 3 in mouse and human sperm. Mol Reprod Dev. 77(9):759-72.

Dr. Anje Nohe

Mukherjee J, Menegazzo N., Booksh K., Smorodin V., Dhurjati P., Nohe A (2011).

Synthesis of L-Cysteine Stabilized Silver Nanoparticles and their Effects on Cell

Viability. Advanced Science Letters, In Press.

Beth Bragdon, Alex D'Angelo, Lauren Gurski, Jeremy Bonor, Kathryn L. Schultz,

Wesley G. Beamer, Clifford J. Rosen and Anja Nohe. Altered Plasma Membrane

Dynamics of Bone Morphogenetic Protein Receptor Type Ia in a Low Bone Mass Mouse

Model. Bone, Accepted.

Dr. Melinda Duncan

Justin R. DiAngelo, Trusha K. Vasavada, William Cain, and Melinda K. Duncan (2001)

Production of monoclonal antibodies against chicken Pop1 (BVES). Hybridoma and

Hybridomics 20:377-382

Nicole L. Hill, Andres Laib and Melinda K. Duncan (2002) Mutation of The

Ectodysplasin-A gene results in bone defects in mice. J. Comp. Pathology 126:220-225.

Trusha Vasavada, Justin DiAngelo and Melinda K. Duncan (2004) Developmental

expression of Pop1/Bves. Journal of Histochemistry and Cytochemistry, 52, 371-377

Janine E. Collinge, Vladimir N. Simirskii, Melinda K. Duncan (2005) Expression of

tissue plasminogen activator during eye development. Experimental Eye Research 81:

90–96.

Liang I Kang, Yan Wang, Arthur T. Suckow, Kirk J. Czymmek, Vesselina G. Cooke,

Ulhas P. Naik and Melinda K. Duncan (2006) Deletion of JAM-A causes Morphological

Defects in the Corneal Epithelium. International Journal of Biochemistry and Cell

Biology. In press.

Xiaoren Chen, Jennifer R. Taube, Tapan P. Patel, and Melinda K. Duncan (2007) Dual

roles for Prox1 in the regulation of chicken betaB1-crystallin expression, Investigative

Ophthalmology and Visual Sciences, in press

Xiaoren Chen, Tapan P. Patel, Vladimir I. Simirskii and Melinda K. Duncan (2008)

PCNA interacts with Prox1 and represses its transcriptional activity, Molecular Vision

14: 2076-2086.

Brian P. Danysh, Tapan P. Patel, Kirk J. Czymmek, David A. Edwards, Liyun Wang,

Jayanti Pande, and Melinda K. Duncan (2010) Characterizing Molecular Diffusion in the

Lens Capsule. Matrix Biology 29: 228-236.

Vivek D. Desai, Yan Wang, Vladimir N. Simirskii and Melinda K. Duncan (2010) CD44

expression is developmentally regulated in the mouse lens and increases in the lens

epithelium during epithelial-mesenchymal transition, Differentiation 79: 111-119.

Bhagwat V Alapure, Jaime K Stull, Zeynep Firtina, Melinda K Duncan (2012) The

Unfolded Protein Response is activated in Connexin50 mutant mouse lenses

Experimental Eye Research.

Dr. Deni Galileo

Erin M. (Henninger) Stettler and Deni S. Galileo (2004). Radial glia produce and align

the ligand fibronectin during neuronal migration in the developing chick brain. J. Comp.

Neurol., 468:441-451.

Alexandra Cretu, Joseph S. Fotos, B. W. Little, and Deni S. Galileo, (2005). Human

and rat glioma growth, invasion, and vascularization in a novel chick embryo brain tumor

model. Clin Exper Metas. 22:225-236.

Joesph S. Fotos, Vivek P. Patel, Norman J. Karin, M. K. Temburni, John T. Koh, and

Deni S. Galileo (2006) Automated time-lapse microscopy and high-resolution tracking of

cell migration. Cytotechnology 51(1): 7-19.

L. M. Masiello, Joseph S. Fotos, Deni S. Galileo, Norman J. Karin (2006)

Lysophosphatidic acid induces chemotaxis in MC3T3-E1 osteoblastic cells. Bone. 39(1)

72-82.

Jing Tian, , Carrie A. Paquette-Straub, E.H. Sage, S.E. Funk, Vivek Patel, Deni S.

Galileo, and Mary Ann McLane (2007). Inhibition of melanoma cell motility by the

snake venom disintegrin eristostatin, Toxicon, 49(7), 899-908.

Genevieve S. Griffiths, Kristin L. Reese, Deni S. Galileo, Patricia A. Martin-DeLeon

(2008) Investigating the role of Murine Epididymosomes and Uterosomes in GPI-linked

protein transfer to sperm using SPAM1 as a model. Mol Reprod Dev. 75(11), 1627-36.

Genevieve S. Griffiths, Kimberly A. Miller, Deni S. Galileo, Patricia A. Martin-DeLeon

(2008). Murine SPAM1 is secreted by the estrous uterus and oviduct in a form that can

bind to sperm during capacitation: acquisition enhances hyaluronic acid-binding ability

and cumulus dispersal efficiency. Reproduction, 135(3):293–301.

Muhua Yang, Shalini Adla, Murali K. Temburni, Vivek P. Patel, Errin L. Lagow, Owen

A. Brady, Jing Tian, Magdy I. Boulos, and Deni S. Galileo (2009) Stimulation of glioma

cell motility by expression, proteolysis, and release of the L1 neural cell recognition

molecule. Cancer Cell International, Oct 29;9:27.

Deni S. Galileo and Vivek P. Patel (2009). FOCUS: Tracking Migrating Cells with

MetaMorph® Software. MetaMatters, 1(4), 1-3.

Kristin L. Reese, Aravindan RG, Griffiths GS, Shao M, Wang Y, Galileo DS, Atmuri V,

Triggs-Raine BL, Martin-Deleon PA (2010). Acidic hyaluronidase activity is present in

mouse sperm and is reduced in the absence of SPAM1: evidence for a role for

hyaluronidase 3 in mouse and human sperm. Mol Reprod Dev. 77(9):759-72.

Muhua Yang, Yupei Li, Kalyani Chilukuri, Owen A. Brady, Magdy I. Boulos, John C.

Kappes, Deni S. Galileo (2011). L1 stimulation of human glioma cell motility correlates

with FAK activation. J Neurooncol., 105(1):27-44.

Dr. Norman Karin

Suzanne E. Biehn, Kirk J. Czymmek, Karla Leavens, and Norman Karin (2004)

Expression of the Sarco/Endoplasmic Ca2+

-ATPase, SERCA1a, in Fibroblasts Induces

the Formation of Organelle Membrane Arrays. Experimental Cell Research, Exp. Cell

Res. 292:78-88

Joesph S. Fotos, Vivek P. Patel, Norman J. Karin, M. K. Temburni, John T. Koh, and

Deni S. Galileo (2006) Automated time-lapse microscopy and high-resolution tracking of

cell migration. Cytotechnology 51(1): 7-19.

L. M. Masiello, Joseph S. Fotos, Deni S. Galileo, Norman J. Karin (2006)

Lysophosphatidic acid induces chemotaxis in MC3T3-E1 osteoblastic cells. Bone.

39(1) 72-82.

Dr. Catherine Kirn-Safran

Stephanie A. Miller, Anissa J. Brown, Mary C. Farach-Carson, and Catherine B. Kirn-

Safran (2003) HIP/RPL29 down-regulation accompanies terminal chondrocyte

differentiation. Differentiation, 71:322-336. (source of cover photo for the issue.)

Catherine B. Kirn-Safran, Daniel S. Oristan, Richard J. Focht, Shaila G. Parker, Jay L.

Vivian, and Daniel D. Carson (2007) Global Growth Deficiencies in Mice Lacking the

Ribosomal Protein HIP/RPL29, Developmental Dynamics 236, 447-460.

Laura G. Sloofman , Verdelis K, Spevak L, Zayzafoon M, Yamauchi M, Opdenaker

LM, Farach-Carson MC, Boskey AL, Kirn-Safran CB. (2010) Effect of HIP/ribosomal

protein L29 deficiency on mineral properties of murine bones and teeth. Bone 47: 93-

101.

Dr. Eric Kmiec

L. Liu, Y. Hu, Michael Usher, and Eric B. Kmiec (2003) The nuclease activity of

Saccharomyces cerevisiae Mre11 functions in targeted nucleotide alteration. Applied and

Environmental Microbiology 69(10):6216-6224.

M. C. Rice, Brandy Heckman, Y. Liu, and Eric B. Kmiec (2003) Fluorescent detection

and isolation of DNA variants using stabilized RecA-coated oligonucleotides. Genome

Research 14:116-125.

Dr. Gary Laverty

Gary Laverty, C. McWilliams, Amanda Sheldon, and S. S. Arnason, (2003). PTH

stimulates a Cl-dependent and EIPA-sensitive current in chick proximal tubule cells in

culture. Am. J. Physiol. Renal Physiol. 284:F987-F995

Dr. Ulhas Naik

James J. Parris, V. G. Cooke, W. C. Skarmes, M. K. Duncan, and Ulhas P Naik (2005)

JAM-A Expression During Embryonic Development. Developmental Dynamics 233,

1517-24.

Liang-I Kang, Wang, I., Arthur T. Suckow, Kurt J. Czymmek, V. G. Cooke,

Ulhas P. Naik, and Melinda K. Duncan, (2006) Deletion of JAM-A causes morphological

defects in the corneal epithelium. International J. Biochemistry and Cell Biology. In

press.

Dr. Erica Selva

R. M.Goodman, S. Thombre, Z. Firtina, D. Gray, Daniella Betts, J. Roebuck, E. P.

Spana, and Erica M. Selva (2006) Sprinter: A novel transmembrane protein required for

Wg secretion and signaling. Development, 133, 4901-4911.

Dr. Malcolm Taylor

Bills, M. L., Callaway, S. B., Kessler, A. T. and Taylor, M. H. (2008) Ovarian

contractions in various teleost families, J. Fish Biology 72, 671-680.

Department of Chemistry and Biochemistry

Dr. Brian Bahnson

D. T.Yeung , D. Josse, J. D. Nicholson, A. Khanal, Christopher W. McAndrew, Brian

J. Bahnson, D. E. Lenz, D. M. Cerasoli (2004) Structure/function analyses of human

serum paraoxonase (HuPON1) mutants designed from a DFPase-like homology model.

Biochim Biophys Acta. 1702(1):67-77

Dr. Svilen Bobev

Sheng-qing Xia, Jonathan Hullmann, Svilen Bobev, Arif Ozbay, Edmund R. Nowak

and Veronika Fritsch (2007) Synthesis, crystal structures, magnetic and electric transport

properties of Eu11InSb9 and Yb11InSb9, Journal of Solid State Chemistry 180, 2088-

2094.

Jonathan Hullman, Sheng-quin Xia, and Svilen Bobev (2007) Sr11SbY9 from molten In,

Acta Crystallographica, E63, i178.

Svilen Bobev, Jonathan Hullmann, Thomas Harmening, and Rainer Pottgen (2010)

Novel ternary alkaline-earth and rare-earth metal antimonides from gallium or indium

flux. Synthesis, structural characterization and 121

Sb and 151

Eu Mossbauer spectroscopy

of the series A7Ga8Sb8 (A = Sr, Ba, Eu) and Ba7In8Sb8. Dalton Trans., 39: 6049–6055.

Dr. Steven D. Brown

A. J. Myles, Tyler A. Zimmerman, Steven D. Brown (2006) Transfer of Multivariate

Classification Models Between laboratory and Process Near-Infrared Spectrometers for

the Discrimination of Green Arabica and Robusta Coffee Beans, Appl. Spectrosc. 60:

1198-1203.

Dr. Junghuei Chen

Zhaoqin Zhang, Amanda M. Simons, Vidhya P. Prabhu, Junghuei Chen (1998) Strand

exchange protein 1 (Sep1) from Saccharomyces cerevisiae does not promote branch

migration in vitro. Journal of Biolological Chemistry 273(9):4950-4956.

Junghuei Chen, Eugene Antipov, Bertrand Lemieux, Walter Cedeno, and D. H. Wood.

(1999) DNA Computing Implementing Genetic Algorithms” in L. Landweber, E.

Winfree, R. Lipton, and S. Freeland (eds.) Proceedings of DIMACS Workshop on

Evolution as Computation, pp 39-49.

David Harlan Wood, Junghuei Chen, Eugene Antipov, Bertrand Lemieux, Walter

Cedeno, (2000) In vitro selection for a max-1s DNA genetic algorithm. In David K.

Gifford and Erik Winfree, editors, DIMACS Series in Discrete Mathematics and

Theoretical Computer Science. 54, 23-37.

David Harlan Wood, Junghuei Chen, Eugene Antipov, Walter Cedeno, and Bertrand

Lemieux. A DNA implementation of the Max-1s problem. In Wolfgang Banzhaf, A. E.

Eiben, Max H. Garzon, Vasant Honavar, Mark Jakiela, and Robert E. Smith, editors,

GECCO-99: Proceedings of the Genetic and Evolutionary Computation Conference, July

13-17, 1999, Orlando, Florida USA, San Francisco, 1999. Morgan Kaufman.

David Harlan Wood. Junghuei Chen, Eugene Antipov, Bertand Lemieux, W. Cedeno

(2001) A Design for DNA Computation of OneMax Problem. Special issue on

Biomolecular Approaches to Soft Computing. Soft Computing 5:19-24.

Zhaoquin Zhang, Dennis Yoon, Jacob R. LaPorte, and Junghuei Chen (2001)

Appropriate Initiation of Strand Exchange Reaction Promoted by RecA Protein Requires

ATP Hydrolysis, J. Mol. Biol. 309:29-43.

L. Cai, Ulf Marquardt, Z. Zhang, M.ark J. Taisey and Junghuei Chen (2001) Influences

of DNA Topology on Synaptic Complex Formation Promoted by RecA Protein of E. coli,

Nucleic Acids Research 29:1389-1398.

Vidhya Prabhu VP, Amanda M. Simons AM, H. Iwasaki, D. Gai, Daniel T. Simmons,

and Junghuei Chen (2002) The Effect of p53 on the Rate of Spontaneous Branch

Migration and Resolution of the Holliday Junction by RuvC. J. Mol. Biol. 316:1023-

1032 .

Dennis Yoon, Y. Wang, Kenneth Stapleford, L. Wiesmüller, and Junghuei Chen. (2004)

P53 Inhibits Strand Exchange and Replication Fork Regression Promoted by Human

Rad51, J. Mol. Biol. 336, 639–654.

Dr. Roberta F. Colman

J. Wang, Susan Bauman, and Roberta F. Colman, (1998) Photoaffinity Labeling of Rat

Liver Glutathione S-Transferase, 4-4, by Glutathionyl S-[4-(Succinimidyl)-

Benzophenone]. Biochemistry 37:15671-15679.

J. Wang, Susan Bauman, and Roberta F. Colman (2000) Probing Subunit Interactions in

Alpha Class Rat Liver Glutathione S-Transferase with the Photoaffinity Label

Glutathionyl S-[4-(Succinimidyl)-benzophenone]. J. Biol. Chem. 275:5493-5503.

Jennifer B. Palenchar, Jennifer M. Crocco, and Roberta F. Colman (2003) The

Characterization of Mutant Bacillus subtilis Adenylosuccinate Lyases Corresponding to

Severe Human Adenylosuccinate Lyase Deficiencies. Protein Science 12:1694-1705.

Sambanthamurthy Soundar, Molly O'Hagan, Kenneth S. Fomulu, and Roberta F.

Colman (2006) Identification of Mn2+

-binding Aspartates from alpha , beta and

gamma Subunits of Human NAD-dependent Isocitrate Dehydrogenase J. Biol. Chem.

281(30): 21073-81.

Mark L. Segall, Meghan A. Cashman, and Roberta F. Colman (2007) Important roles of

hydroxylic amino acid residues in the function of Bacillus subtilis adenylosuccinate lyase

Protein Sci. 16, 441 - 448.

Ariyananda, L.D. Z., Lee, P., Antonopoulos, Christina and Colman, R.F.

(2009). Biochemical and Biophysical Analysis of Five Disease-Associated Human

Adenylosuccinate Lyase Mutants. Biochemistry 48, 5291-5302.

Anastasia F. Thevenin, Chati L. Zony, Brian J. Bahnson, and Roberta F. Colman

(2011). GSTpi Modulates JNK Activity Through a Direct Interaction with JNK

Substrate, ATF2" Protein Science, 20(5), 834-848.

Lushanti Ariyananda, Christina Antonopoulos, Jenna Currier, Roberta F. Colman,

(2011) "In Vitro Hybridization and Separation of Hybrids of Human Adenylosuccinate

Lyase from Wild Type and Disease-Associated Mutant Enzymes" Biochemistry 50(8),

1336-1346.

Anastasia F. Thevenin, Chati L. Zony, Brian J. Bahnson, and Colman, R.F. (2011).

Activation by Phosphorylation and Purification of Human c-Jun N-Terminal Kinase

(JNK) Isoforms in milligram Amounts. Protein Expression and Purification. 75 (2) 138-

146.

Dr. Joseph M. Fox

Z. Dong, Richard J. Karpowicz, Jr., Shi Bai, Glenn P. A. Yap, Joseph M. Fox, (2006)

Control of Absolute Helicity in Single-Stranded Abiotic Metallofoldamers. J. Am. Chem.

Soc. 128(44): 14242-14243.

Dr. Mahendra K. Jain

Allison Liechty, J. Chen, and M. K. Jain. (2000) Origin of Antibacterial Stasis by

Polymyxin B in Escherichia coli. Biochimica et Biophysica Acta. 1463:55-64.

Dr. John Koh

Hai Fen Ye, John T. Koh* and Kathryn E. O'Reilly, A subtype-selective thyromimetic

designed to bind a mutant thyroid hormone receptor implicated in resistance to thyroid

hormone (RTH), J. Am. Chem. Soc., 2001, 123, 1521-1522. (featured in C&E News)

Kristian H. Link, Federico G. Cruz, Hai-Fen Ye, Kathryn E. O'Reilly and John T. Koh

(2004) Photo-caged agonists of the nuclear receptors RARg and TRb provide unique

time-dependent gene expression profiles for light-activated gene patterning. Bioorganic

& Medicinal Chemistry 12, 5949-5959.

Y. Shi, Hai-Fen Ye, Kristian H. Link, M.C.Putnam, Isaac Hubner, Sarah Dowdel, and

John T. Koh, (2005). Mutant-selective thyromimetics for the chemical rescue of thyroid

hormone mutants associated with resistance to thyroid hormone (RTH). Biochemistry, 44,

4612-4626.

Joseph S. Fotos, Vivek P. Patel, Norman J. Karin, M. K. Temburni, John T. Koh, and

Deni S. Galileo (2006) Automated time-lapse microscopy and high-resolution tracking of

cell migration. Cytotechnology 51(1): 7-19.

Dr. Eugene Mueller

Vidhyashankar Ramamurthy, Steven L. Swann, Jennifer L. Paulson, Christopher J.

Spedaliere, and Eugene G. Mueller (1999) Critical Aspartic Acid Residues in

Pseudouridine Synthases, Journal of Biological Chemistry 274:22225-22230.

Eugene G. Mueller, Christopher J. Buck, Peter M. Palenchar, Lora J. Barnhart, and

Jennifer L. Paulson, (1998) Identification of a Gene Involved in 4-Thiouridine

Generation in tRNA, Nucleic Acids Research 26, 2606-2610.

Jaimie S. Robinson and Eugene G. Mueller (2001)Will Introduction of an E. Coli Gene

Lead to 4-Thiouridine in yeast tRNA? FASEB Journal 15, A188.

Christopher S. Hamilton, Todd M. Greco, Caroline A. Vizthum, Joy M. Ginter, Murray

V. Johnston, and Eugene G. Mueller (2006) Mechanistic Investigations of the

Pseudouridine Synthase RluA Using RNA Containing 5-Fluorouridine, Biochemistry

45, 12029-12038.

Chapman M. Wright, Glenn D. Christman, Ann M. Snellinger, Murray V. Johnston, and

Eugene G. Mueller (2006) , Direct Evidence for Enzyme Persulfide and Disulfide

Intermediates during 4-Thiouridine Biosynthesis, Communications of the Royal Society of

Chemistry, 3104-3106.

Dr. Sandeep Patel

Brad A. Bauer, Yang Zhong, David Meninger, Joseph E. Davis, and Sandeep Patel

(2010) Phase-Transfer Energetics of Small-Molecule Alcohols Across the Water-Hexane

Interface: Molecular Dynamics Simulation Using Charge Equilibration Models. Journal

of Molecular Graphics and Modeling, 29(6), 876-887.

Brad A. Bauer, T.R. Lucas, David J. Meninger, Sandeep Patel. (2011) Water Permeation

Through DMPC Lipid Bilayers using Polarizable Charge Equilibration Force Fields.

Chem Phys Lett. 508(4-6):289-294.

Dr. Clifford Robinson

Damien Thévenin, Tzvetana Lazarova, Matthew F. Roberts, and Clifford R. Robinson

(2005) Oligomerization of the fifth transmembrane domain from the adenosine A2A

receptor. Protein Science 14, 2177-2186.

Damien Thévenin, Matthew F. Roberts, Tzvetana Lazarova, and Clifford R. Robinson

(2005) Identifying Interactions between Transmembrane Helices from the Adenosine

A2AReceptor. Biochemistry, 44 (49), 16239 -16245.

Dr. Sharon Rozovsky

Stephanie A. Schaefer, Ming Dong, Renee P. Rubenstein, Wayne A. Wilkie, Brian J.

Bahnson, Colin Thorpe and Sharon Rozovsky. 77

Se Enrichment of Proteins Expands the

Biological NMR Toolbox (Submitted to Journal of Molecular Biology).

Dr. Joel Schneider

Kyung Lee, Valeria Dzubeck, Lauren Latshaw, and Joel P. Schneider, (2004) De Novo

Designed Peptidic Redox Potential Probe: Linking Sensitized Emission to Disulfide Bond

Formation, J. Am. Chem. Soc. 126(42):13616 -13617.

Daniel J. Cline, Sarah E. Redding, Stephen G. Brohawn, James A. Psathas, Joel P.

Schneider, and Colin Thorpe (2004) Water-soluble Phosphines as Reductants of Peptide

and Protein Disulfide Bonds: Reactivity and Membrane Permeability, Biochemistry

43(48),15195-203.

Christopher M. Micklitsch, Patrick J. Knerr, Monica C. Branco, Radhika Nagarkar,

Darrin J. Pochan, and Joel P. Schneider, (2011) Zinc-Triggered Hydrogelation of a Self

Assembling β-Hairpin Peptide, Angewandte Chemie International Edition, 50, 1577.

Dr. Douglass Taber

Douglas F. Taber, Gina Bui, and Bei Chen (2001) Synthesis of (-)-Delobanone. J. Org.

Chem. 66:423-3426.

Douglas F. Taber, Shweta Patel, Travis M. Hambleton, and Emma Winkel (2007)

Vanillin Synthesis from 4-Hydroxybenzaldehyde, J. Chem. Educ. 84, 1158.

Douglass F. Taber, J. F. Berry, and Timothy J. Martin (2008) Convenient synthetic

route to an enantiomerically pure FMOC -amino acid, J. Org. Chem. 73, 9334-9339.

Dr. Klaus Theopold

Frederico A. Jové, C. Pariya, Michael Scoblete, Glenn P. A. Yap, and Klaus H.

Theopold (2010) A Family of Four-Coordinate Iron(II) Complexes bearing the Sterically

Hindered Tris(pyrazolyl)borato Ligand [TptBu,Me

]. Chem. Eur. J. 2011, 17, 1310.

W. H. Monillas, T. C. Bazzoli, G. P A Yap, and K. H. Theopold, Synthesis and Structure

of bis(β-Diketiminate) Chromium(II) Complexes, J. Chem. Crystallogr. 2010, 40, 67.

Dr. Colin Thorpe

Raymond C Trievel, Rong Wang, Vernon E.Anderson, and Colin Thorpe (1995) The

Role of the Carbonyl Group in Thioester Chain Length Recognition by the Medium

Chain Acyl-CoA Dehydrogenase. Biochemistry 34:8457-8605.

Karen L. Hoober, Stacey L. Sheasley, Hiram F. Gilbert, Colin Thorpe (1999) Sulfhydryl

oxidase from egg white. A facile catalyst for disulfide bondformation in proteins and

peptides. Journal of Biological Chemistry, 274(32), 22147-22150.

Steven G. Brohawn, Irina R. Miksa, Colin Thorpe (2003) Avian Sulfhydryl Oxidase Is

Not a Metalloenzyme: Adventitious Binding of Divalent Metal Ions to the Enzyme,

Biochemistry, 42(37), 11074-11082

Daniel J. Cline, Sarah E. Redding, Stephen G. Brohawn, James A. Psathas, Joel P.

Schneider, and Colin Thorpe (2004) Water-soluble Phosphines as Reductants of Peptide

and Protein Disulfide Bonds: Reactivity and Membrane Permeability, Biochemistry

43(48),15195-203.

Jennifer Jaje, Holly N. Wolcott, Olajumoke Fadugba, Diane D. Cripps, A. J. Yang, Ian

H. Mather, Colin Thorpe (2007) A Flavin-Dependent Sulfhydryl Oxidase in Bovine Milk.

Biochemistry 46: On line Oct 18.

Dr. Don Watson

McAtee, J. R.; Martin, S. E. S.; Ahneman, D. T.; Johnson, Keywon A.; Watson, D. A.

"Preparation of Allyl and Vinyl Silanes by the Palladium-Catalyzed Silylation of

Terminal Olefins: A Silyl-Heck Reaction" Angew. Chem. Int. Ed.2012, 15, 3663-

Dr. Neal Zondlo

Agata A. Bielska and Neal J. Zondlo (2006) Hyperphosphorylation of Tau Induces Local

Polyproline II Helix. Biochemistry, 45, 5527-5537.

Department of Chemical Engineering

Dr. Prasad Dhurjati

Mukherjee J, Menegazzo N., Booksh K., Smorodin V., Dhurjati P., Nohe A (2011).

Synthesis of L-Cysteine Stabilized Silver Nanoparticles and their Effects on Cell

Viability. Advanced Science Letters, In Press.

Dr. Abraham Lenhoff

Dumetz, A. C., A. M. Chockla, E. W. Kaler and A. M. Lenhoff, "Effects of pH on

Protein-Protein Interactions and Implications for Protein Phase Behavior", Biophys.

Biochim. Acta, 1784, 600-610 (2008).

A. C. Dumetz, Aaron M. Chockla, Eric W. Kaler, and Abraham M. Lenhoff (2008)

Protein Phase Behavior in Aqueous Solutions: Crystallization, Liquid-Liquid Phase

Separation, Gels and Aggregate, Biophys. J., accepted. (cover picture)

André C. Dumetz, Aaron M. Chockla, Eric W. Kaler and Abraham M. Lenhoff (2009)

Comparative Effects of Salt, Organic and Polymer Precipitants on Protein Phase

Behavior and Implications for Vapor Diffusion, Cryst. Growth Des., 9, 682-691.

Dr. Anne Skaja Robinson

K. J. Kauffman, E. M. Pridgen, F. J. Doyle, III, P. S. Dhurjati, and A. S. Robinson,

Decreased Protein Expression and Intermittent Recoveries in the BiP Levels Result from

Cellular Stress during Heterologous Protein Expression in Saccaromyces cerevisiae.

Biotech. Prog., 18, 942-950 (2002).

R.T.Niebauer, Allison Wedekind, and Anne Skaja Robinson (2004) Decreases in yeast

expression yields of the human adenosine receptor are a result of translational or post-

translational events, Protein Exp. Purif., 37 (1) 34-143.

Alison Wedekind, Michelle A. O’Malley, Ronald T. Niebauer, and Anne S. Robinson

(2006) Optimization of the Human Adenosine A2a Receptor Yields in Saccharomyces

cerevesiae, Biotechnology Progress 22(5): 1249-55.

Steven E. Bane, Javier E. Velasquez, and Anne Skaja Robinson, Expression and

Purification of Milligram Levels of Inactive G-Protein Coupled Receptors in

E. coli, Protein Expression and Purification, Protein Expr Purif 52(2): 348-55.

D. Raden, , S. Hildebrandt, P. Xu, Elizabeth Bell, Frank J. Doyle, III and Anne S.

Robinson (2005) Analysis of cellular response to protein over-expression, IEE Proc Syst

Biol 152(4): 285-9.

Matthew J. Gage, Jennifer L. Zak and Anne S. Robinson (2005). "Three amino acids

that are critical to formation and stability of the P22 tailspike trimer." Protein Sci 14(9):

2333-43.

Dr. Millicent Sullivan

Millili, P.G., Selekman, J.A., Blocker, K.M., Johnson, D.A., Naik, U.P., and Sullivan,

M.O. (2010) Structural and Functional Consequences of Poly(ethylene glycol) Inclusion

on DNA Condensation for Gene Delivery, Microsc. Res. Tech. 73: 866-877.

Department of Medical Technology

Dr. Mary Ann McLane

Mary Ann McLane, Melissa A. Kuchar, C. Brando, D. Santoli, Carrie. A. Paquette-

Straub, Mary Elizabeth Miele. New insights on disintegrin-receptor interactions:

Eristostatin and melanoma cells. Haemostasis 31:177-182, 2001

Mary Ann McLane, E. E. Sanchez, Alice Wong, C. Paquette-Straub, J. C.Perez (2004)

Disintegrins. Current Drug Targets-Cardiovascular and Haematological Disorders

4:327-355.

Mary Ann McLane, Xiaoming Zhang, Jing Tian, Claire Zelinskas, Apoorva Srivastava,

Brett Hensley, Carrie Paquette-Straub (2005) Scratching below the surface: Wound

healing and alanine mutagenesis provide unique insights into interactions between

eristostatin, platelets and melanoma cells. Pathophysiology of Thrombosis and

Haemostasis, 34(4-5): 164-168.

Jing Tian, Carrie A. Paquette-Straub, E.H. Sage, S.E. Funk, Vivek Patel, Deni S. Galileo,

and Mary Ann McLane (2007). Inhibition of melanoma cell motility by the snake venom

disintegrin eristostatin, Toxicon, 49(7), 899-908.

Department of Plant and Soil Science

Dr. K. Eric Wommack

Kurt E. Williamson, Jennifer B. Schnitker, Mark Radosevich, David W. Smith, and

K. Eric Wommack (2008) Cultivation-Based Assessment of Lysogeny Among Soil

Bacteria, Microbial Ecology 56, 437-447.

Helen F. Schmidt, Sakowski EG, Williamson SJ, Polson SW, Wommack K. (2013)

Shotgun metagenomics indicates novel family A DNA polymerases predominate within

marine virioplankton. The ISME Journal