planetary in situ capillary electrophoresis system … · chip capillary electrophoresis instrument...

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PLANETARY IN SITU CAPILLARY ELECTROPHORESIS SYSTEM (PISCES) P. A. Willis, 1 A. M. Stockton, 1 M. F. Mora, 1 M. L. Cable, 1 N. E. Bramall, 2 E. C. Jensen, 3 H. Jiao, 3 E. Lynch 4 , R. A. Mathies 4 1. Jet Propulsion Laboratory, 4800 Oak Grove Drive, Pasadena, CA 91009, 2. Los Gatos Research, Mountain View, CA 94041, 3. HJ Science & Technology, Santa Clara, CA 95050, 4. University of California, Berkeley, CA 94720 Introduction: We propose to develop PISCES, a 3kg, 2W, flight- capable microfluidic lab-on-a-chip capillary electro- phoresis analyzer that is capable of injesting solid, liquid, or gas samples and performing a suite of chem- ical analyses with parts per trillion sensitivity. This system would be a general purpose analytical system for in situ planetary exploration. For analysis of gases or liquids, the system would be capable of actively acquiring samples via a needle inlet. In addition to acquiring samples from the environment, gaseous ef- fluent from other instrument systems such as pyrolysis GC-MS could also be analyzed by bubbling through a liquid solvent and then analyzing dissolved content. Solid samples would have to provided by an external system in powder form and dumped into a funnel atop the unit. Our technology builds upon the foundation laid by the Mars Organic Analyzer systems conceived and developed at UC Berkeley. However, it would extend this technology intended for Mars in a number of critical aspects, making it applicable to Titan and a variety of other planetary environments. These en- hancements include: 1) It would be completely autonomous, performing sample handling for itself and possibly other in- strument systems. 2) It would have an expanded range of chemical tar- gets. 3) It would have a reliable means for storing all rea- gents required for analysis in dried form. 4) It could handle samples in multiple forms, includ- ing solids, liquids, and gases. 5) It could operate over a wide range of ambient tem- peratures and pressures. Background: NASA’s solar system exploration goals, particular- ly in the growing field of astrobiology [1], involve investigations of the composition of matter present on a variety of planetary bodies for which sample return missions are not practical or affordable (e.g. Europa, Titan, etc.). For these targets, in situ analyses are the only feasible option, and are ideally addressed by in- struments capable of wet-chemical analyses of com- plex mixtures on planets, moons, and primitive bodies. Instrumentation of this kind must be capable of auton- omous function aboard a robotically controlled vehicle that collects data and relays it back to Earth. Due to the low power, mass, and volume requirements and extreme sensitivity enabled by lab-on-a-chip analyses, microcapillary electrophoresis is uniquely suited to meet these analytical needs. Although this technology can be adapted for a variety of different Solar System targets (including Titan, Europa, Enceladus, etc…), the bulk of development efforts to date have focused on the Mars Organic Analyzer (MOA), a portable micro- chip capillary electrophoresis instrument developed for ultrasensitive biomolecular analysis on Mars. In this contribution we discuss recent developments in the MOA technology that would enable its implementation on a host of missions to a variety of destinations in our solar system. Mars Organic Analyzer (MOA) technology [2] has demonstrated extremely high sensitivity (sub-pptr to ppb) to multiple organic compound classes, including amines, amino acids [3], aldehydes, ketones [4], car- boxylic acids [5], and polycyclic aromatic hydrocar- bons [6]. This technology, developed at UCB (MOA) and under further maturity development at JPL (PISCES), utilizes microchip capillary electrophoresis with laser-induced fluorescence detection. Laboratory prototypes using off-the-shelf parts consume low pow- er (~15W) and minimal reagent (<100 μL/analysis) and have low overall mass (~11kg) and volume (<14,000 cm 3 ). Recent Enhancements in Chemical Analysis: We seek to develop an instrument capable of creat- ing inventories of a broad range of different organic molecules at extremely high sensitivity. Hence we have broadened the scope of molecules analyzed by previous MOA technology to include other organic compound classes which may be essential to elucidate chemical processes on other worlds, or to fingerprint life. For example, thiols are a class of organic mole- cules that have been implicated in the origin of life on Earth and may provide information on the biotic or abiotic chemical processes that have shaped extrater- restrial locations. We developed a PISCES-compatible analytical method for thiols using the fluorescent probe Pacific Blue malemide. This method yielded pptr lim- its of detection, and enabled the quantitative composi- tional analysis of dissolved thiols in samples from geo- thermal pools at Hot Creek Gorge, CA [7]. We have also developed a new method for the analysis of long chain amines using microchip capil- 1038.pdf International Workshop on Instrumentation for Planetary Missions (2012)

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Page 1: PLANETARY IN SITU CAPILLARY ELECTROPHORESIS SYSTEM … · chip capillary electrophoresis instrument developed for ultrasensitive biomolecular analysis on Mars. In this contribution

PLANETARY IN SITU CAPILLARY ELECTROPHORESIS SYSTEM (PISCES) P. A. Willis,1 A. M. Stockton,1 M. F. Mora,1 M. L. Cable,1 N. E. Bramall,2 E. C. Jensen,3 H. Jiao,3 E. Lynch4, R. A. Mathies4 1. Jet Propulsion Laboratory, 4800 Oak Grove Drive, Pasadena, CA 91009, 2. Los Gatos Research, Mountain View, CA 94041, 3. HJ Science & Technology, Santa Clara, CA 95050, 4. University of California, Berkeley, CA 94720

Introduction: We propose to develop PISCES, a 3kg, 2W, flight-

capable microfluidic lab-on-a-chip capillary electro-phoresis analyzer that is capable of injesting solid, liquid, or gas samples and performing a suite of chem-ical analyses with parts per trillion sensitivity. This system would be a general purpose analytical system for in situ planetary exploration. For analysis of gases or liquids, the system would be capable of actively acquiring samples via a needle inlet. In addition to acquiring samples from the environment, gaseous ef-fluent from other instrument systems such as pyrolysis GC-MS could also be analyzed by bubbling through a liquid solvent and then analyzing dissolved content. Solid samples would have to provided by an external system in powder form and dumped into a funnel atop the unit. Our technology builds upon the foundation laid by the Mars Organic Analyzer systems conceived and developed at UC Berkeley. However, it would extend this technology intended for Mars in a number of critical aspects, making it applicable to Titan and a variety of other planetary environments. These en-hancements include: 1) It would be completely autonomous, performing

sample handling for itself and possibly other in-strument systems.

2) It would have an expanded range of chemical tar-gets.

3) It would have a reliable means for storing all rea-gents required for analysis in dried form.

4) It could handle samples in multiple forms, includ-ing solids, liquids, and gases.

5) It could operate over a wide range of ambient tem-peratures and pressures.

Background: NASA’s solar system exploration goals, particular-

ly in the growing field of astrobiology [1], involve investigations of the composition of matter present on a variety of planetary bodies for which sample return missions are not practical or affordable (e.g. Europa, Titan, etc.). For these targets, in situ analyses are the only feasible option, and are ideally addressed by in-struments capable of wet-chemical analyses of com-plex mixtures on planets, moons, and primitive bodies. Instrumentation of this kind must be capable of auton-omous function aboard a robotically controlled vehicle that collects data and relays it back to Earth. Due to

the low power, mass, and volume requirements and extreme sensitivity enabled by lab-on-a-chip analyses, microcapillary electrophoresis is uniquely suited to meet these analytical needs. Although this technology can be adapted for a variety of different Solar System targets (including Titan, Europa, Enceladus, etc…), the bulk of development efforts to date have focused on the Mars Organic Analyzer (MOA), a portable micro-chip capillary electrophoresis instrument developed for ultrasensitive biomolecular analysis on Mars. In this contribution we discuss recent developments in the MOA technology that would enable its implementation on a host of missions to a variety of destinations in our solar system.

Mars Organic Analyzer (MOA) technology [2] has demonstrated extremely high sensitivity (sub-pptr to ppb) to multiple organic compound classes, including amines, amino acids [3], aldehydes, ketones [4], car-boxylic acids [5], and polycyclic aromatic hydrocar-bons [6]. This technology, developed at UCB (MOA) and under further maturity development at JPL (PISCES), utilizes microchip capillary electrophoresis with laser-induced fluorescence detection. Laboratory prototypes using off-the-shelf parts consume low pow-er (~15W) and minimal reagent (<100 µL/analysis) and have low overall mass (~11kg) and volume (<14,000 cm3).

Recent Enhancements in Chemical Analysis: We seek to develop an instrument capable of creat-

ing inventories of a broad range of different organic molecules at extremely high sensitivity. Hence we have broadened the scope of molecules analyzed by previous MOA technology to include other organic compound classes which may be essential to elucidate chemical processes on other worlds, or to fingerprint life. For example, thiols are a class of organic mole-cules that have been implicated in the origin of life on Earth and may provide information on the biotic or abiotic chemical processes that have shaped extrater-restrial locations. We developed a PISCES-compatible analytical method for thiols using the fluorescent probe Pacific Blue malemide. This method yielded pptr lim-its of detection, and enabled the quantitative composi-tional analysis of dissolved thiols in samples from geo-thermal pools at Hot Creek Gorge, CA [7].

We have also developed a new method for the analysis of long chain amines using microchip capil-

1038.pdfInternational Workshop on Instrumentation for Planetary Missions (2012)

Page 2: PLANETARY IN SITU CAPILLARY ELECTROPHORESIS SYSTEM … · chip capillary electrophoresis instrument developed for ultrasensitive biomolecular analysis on Mars. In this contribution

lary electrophoresis. This method also yields pptr sen-sitivity and provides baseline resolution of species differing by only 2 carbons for chains containing up to 18 carbon atoms. Additionally, for this method, we used a non-aqueous solvent, ethanol, which enabled analyses at significantly reduced temperatures. This is the first ever reported example of microchip non-aqueous capillary electrophoresis (µNACE), and also the first report of chip based CE separations performed below zero Celsius. We demonstrated analyses down to -20°C, and expect to be able to conduct analyses at much lower temperatures (<-80°C), enabling analyses at Mars ambient temperature, or atop the battery por-tion of a Titan payload [8]. Representative data show-ing the temperature dependence of separations is given in Figure 1.

Figure 1. Examples of the first microchip CE analyses per-formed below zero Celsius. These separations are of long chain primary amines using ethanol as the running buffer. This is the first reported example of microchip non-aqueous CE (µNACE) separations. We have also performed separa-tions using solutions comprised of DMSO and DMF.

Our non-aqueous microchip capillary electrophore-

sis (µNACE) method was applied to the analysis of Titan analog samples (tholins) to demonstrate the fea-sibility of in situ implementation on Titan. Shown in Figure 2 are some representative analyses on different tholin samples before and after exposure to oxygen or liquid water. The changes in electropherogram “fin-gerprints” can be clearly correlated to sample oxida-tion. This study demonstrates how this sort of analyses on Titan’s surface could provide information about the role of oxidation of organics produced in the atmos-

phere by surface processes, including possibly cry-ovolcanism.

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Figure 2. Non-aqueous based microchip capillary electro-phoresis (µNACE) analyses of tholins, i.e. Titan aerosol simulants, (black) and the same samples exposed to oxygen and liquid water (gray). The electropherogram “fingerprints” shown here change in response to exposure to different chemical environments. (A) Type I tholin sample. The ap-pearance of peaks before the ammonia peak suggests the formation of multiply charged species. (B) Type II tholin sample. No new peaks are observed and there are only minor changes in existing peak intensities, suggesting that the five years of exposure to ambient conditions were sufficient to fully chemically alter the sample. Separation buffer is 50 mM ammonium acetate and 1.05 M acetic acid in ethanol. The starred peak (*) is a contaminant present in all samples, blanks and controls.

Of course, for any analytical method that relies on chemical reagents, there is concern about storage and stability of reagents. To acquire the extreme (parts per trillion) sensitivity desired for planetary exploration, our approach employs laser induced fluorescence of dyes that react specifically with different organic mol-ecules. Hence we demonstrated that we can dehydrate and rehydrate reagents on PISCES-compatible micro-devices and obtain nearly quantitative recovery (~ 98%). We additionally characterized the hydrolysis

1038.pdfInternational Workshop on Instrumentation for Planetary Missions (2012)

Page 3: PLANETARY IN SITU CAPILLARY ELECTROPHORESIS SYSTEM … · chip capillary electrophoresis instrument developed for ultrasensitive biomolecular analysis on Mars. In this contribution

rate of the Pacific Blue fluorescent probe, and found optimal storage conditions at pH 4 (Figure 3), enabling usage of each aliquot of this reagent for approximately four Earth days [9]. PISCES would utilize a library of dried dyes such as this (a different dye for each molec-ular class), that could be dissolved in liquid when a particular type of analysis was required. Functionally, this library would be similar to a miniaturized, dried out ink-jet printer cartridge that plugs into the top sur-face of the chip. The solution dehydration and rehy-dration process is analogous to making a glass of Tang (another noteworthy NASA-related innovation) but on a much smaller scale.

Figure 3. Dyes used for µCE can be hydrolyzed by water

over time. Here we show the half-lives of PB succinimidyl ester (PBSE) at various pH values. By programming the microfluidic system to reconstitute this dye using pH 4 buff-er, we enable the use of each aliquot for many days.

Recent Developments in Instrumentation: In PISCES technology, microfluidic manipulation

is accomplished using pneumatically actuated mono-lithic membrane valves. Initial microchip demonstra-tions were accomplished using polydimethylsiloxane (PDMS), which exhibits good elasticity and adherence to glass. However, certain properties make it unsuita-ble for space-flight applications, including chemical and gas permeability, and the tendency to permanently bond to the discontinuity in the fluidic layer when not actuated for long time periods (months). Therefore, we developed methods to fabricate devices with Teflon® and Fluorocur™ perfluoropolyether (PFPE) and suc-cessfully demonstrated these membranes in multi-wafer stack fluidic manipulation devices. These fluori-nated membrane based devices maintain performance after repeated thermal cycling, exhibit good chemical resistance, and enable flight-ready devices [10,11].

While initial chip designs enabled successful sam-ple routing, the sample still had to be processed by hand before introduction to the microdevice. For in situ

planetary investigations, this is not possible. Hence we developed a microfluidic architecture that enabled au-tomated sample labeling, serial dilutions, and autono-mous analysis of fluidic laboratory standards contain-ing amines and amino acids [12].

! Figure 4. General purpose microfluidic architecture uti-

lized for performing arbitrary fluidic manipulations on chip. While the above-mentioned device demonstrated

fully autonomous fluidic sample processing and analy-sis of one compound class, a new design was required for the automated analysis of all compound classes in our chemical arsenal. To this end, we characterized device performance based on multiple factors includ-ing operational protocols and fluidic resistance be-tween microvalves and reservoirs [13]. We developed a set of design rules and a novel, general purpose mi-crofluidic processor based on these rules. This proces-sor has a dense-packed network of microvalves at its core, is capable of automated analysis of all target compound classes, and can be reprogrammed in re-sponse to unexpected sample compositions (Figure 4).

Additionally, we have proof of concept for manipu-lating powdered solids on chip (Figure 5). We are de-veloping this technology further to include liquid-based extraction of organic molecules from solids.

1038.pdfInternational Workshop on Instrumentation for Planetary Missions (2012)

Page 4: PLANETARY IN SITU CAPILLARY ELECTROPHORESIS SYSTEM … · chip capillary electrophoresis instrument developed for ultrasensitive biomolecular analysis on Mars. In this contribution

Figure 5. Photographs of on-chip transfer of powdered solid sample from a reservoir using on-chip microvalves. Slurries can also be manipulated as well. Using this technology, PISCES could rehydrate its own dried reagents (analogous to “making Tang from flavor crystals”), and also perform ex-tractions from solid samples on chip.

To increase the TRL level of our chip-based tech-nology, we sought to further miniaturize the packaging of all necessary off-chip instrumentation. To this end, we designed the “Chemical Laptop” (Figure 6), a com-plete battery powered prototype that can operate our chip devices in order to perform fully automated anal-ysis of all targeted compound classes on fluidic and solid samples. This instrument is the size and weight of a large laptop, and incorporates a touch-screen user interface to be compatible with a general user conduct-ing astrobiological or other investigations in the field. A provisional patent is in place [14], and prototype development is underway via SBIR funding.

Figure 6. The Chemical Laptop. This system accepts a

microchip stack in the same way that a conventional laptop accepts a DVD, and is capable of performing all the analyses described previously. The microchip has a reprogrammable layout for chemistry experiments given in Figure 4. This system is intended for widespread use on Earth, but could also be used by astronaut explorers as well. It can also be set up to run automated analyses in the absence of a human op-erator.

Summary of Proposed PISCES Instrument: We propose to repackage Chemical Laptop tech-

nology for general-purpose use in in situ planetary exploration. By removing the “user friendly” design constraint required for a commercial instrument, the system can be reduced to a <3 kg mass that can fit in-side a 17.5 cm diameter, 9 cm tall cylinder and uses a time average of ~ 0.5 W (2 W peak) power. PISCES (Figure 7) could take as inputs gas, liquid, or solid, and analyze with parts-per-trillion sensitivity the sample’s amine, amino acid, short peptide, aldehyde, ketone, carboxylic acid, thiol, and polycyclic aromatic hydro-carbon content. It could also perform sample handling operations for other instrument subsystems and is ex-tremely well-suited to meet the scientific needs of fu-ture missions of solar system exploration.

Figure 7. Design for PISCES, a flight-build µCE instrument that incorporates all the science and technology described in this contribution. Solid samples are delivered to the instru-ment via funnels and processed on-chip. Liquid or gaseous samples can be drawn into the system via capillary tubing shown at the left. This proposed instrument could be built today utilizing off-the-shelf, well-known components, utiliz-es a time-average of 0.5 W (2 W max) during operation, and weighs less than 3 kg. References: [1] Des Marais, D. J., et al., (2008). Astrobio., 8, 715-730. [2] Skelley, A. M., et al. (2007). JGR. Bioge-osci., 112: G04S11. [3] Chiesl, T. N., et al. (2009). Anal. Chem. 81: 2537-2544. [4] Stockton, A. M., et al. (2010). Electrophoresis, 31: 3642-3649. [5] Stockton, A. M., et al. (2011). Astrobio., 11: 519-528. [6] Stockton, A. M., et al. (2009). Anal. Chem. 81: 790-796. [7] Mora, M. F., et al. (2012). Electrophoresis. Submitted. [8] Cable, M. L., et al. (2012). Astrobio. Submitted. [9] Stockton, A. M., et al. (2012). Dyes and Pigments Submitted. [10] Willis, P. A., et al. (2008). Lab Chip 8: 1024-1026. [11] Willis, P. A., et al. (2007). Lab Chip 7: 1469-1474. [12] Mora, M. F., et al. (2011). Anal. Chem. 83: 8636-8641. [13] Stockton, A. M., et al. (2012). Sensors and Actuators B. Submitted. [14] Willis, P. A., et al. The Chemical Laptop. US Provisional Patent filed 6/22/11; CIT-6190-P.

1038.pdfInternational Workshop on Instrumentation for Planetary Missions (2012)