pglo ™ & gfp stan hitomi director, edward teller education center uc davis / lawrence...
TRANSCRIPT
![Page 1: pGLO ™ & GFP Stan Hitomi Director, Edward Teller Education Center UC Davis / Lawrence Livermore National Laboratory, Livermore, CA Kirk Brown Lead Instructor,](https://reader036.vdocuments.us/reader036/viewer/2022062518/56649ce35503460f949af7b1/html5/thumbnails/1.jpg)
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pGLO™ & GFP
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Stan HitomiDirector, Edward Teller Education CenterUC Davis / Lawrence Livermore NationalLaboratory, Livermore, CA
Kirk BrownLead Instructor, Edward Teller Education CenterScience Dept. Chair, Tracy High School and Delta College, Tracy, CA
Sherri Andrews, Ph.D.North Carolina School of the ArtsWinston-Salem, NC
pGLO™ Transformationand Purification of Green Fluorescent Protein (GFP)
Instructors
![Page 4: pGLO ™ & GFP Stan Hitomi Director, Edward Teller Education Center UC Davis / Lawrence Livermore National Laboratory, Livermore, CA Kirk Brown Lead Instructor,](https://reader036.vdocuments.us/reader036/viewer/2022062518/56649ce35503460f949af7b1/html5/thumbnails/4.jpg)
Why Teach Bacterial Transformationand Protein Purification?
• Powerful teaching tool
• Meet national science standards
• Laboratory extensions
• Real-world connections
• Link to careers and industry
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Central Framework of Molecular Biology
DNA RNA Protein Trait
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Links to Real-world
• GFP is a visual marker
• Study of biological processes (example: synthesis of proteins)
• Localization and regulation of gene expression
• Cell movement
• Cell fate during development
• Formation of different organs
• Screenable marker to identify transgenic organisms
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pGLO™ Bacterial Transformation Kit
Bio-Rad pGLO Kit Advantages
• Standards-based
• Comprehensive curricula for inquiry-based investigations
• Compatible with 50 minute class periods
• Serves entire class of 32 students (up to 4 students per group)
• Cost-effective
• Success in student’s hands
• Safe
• Striking results!
![Page 8: pGLO ™ & GFP Stan Hitomi Director, Edward Teller Education Center UC Davis / Lawrence Livermore National Laboratory, Livermore, CA Kirk Brown Lead Instructor,](https://reader036.vdocuments.us/reader036/viewer/2022062518/56649ce35503460f949af7b1/html5/thumbnails/8.jpg)
Green Fluorescent Protein (GFP) Chromatography Kit
GFP Purification kit advantages
• Links to real world science
• Laboratory extensions
• Tangible results
• Leverages equipment
• Amazing results
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Transformation Procedure
Day 1
Day 2
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GFP Workshop Timeline
• Introduction
• Transform bacteria with pGLO plasmid
• Purify GFP using column chromatography
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pGLO Bacterial Transformation Kit
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What is Transformation?
• Uptake of foreign DNA, often a circular plasmid
GFP
Beta-lactamase
Ampicillin
Resistance
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What is a plasmid?
• A circular piece of autonomously replicating DNA
• Originally evolved by bacteria
• May express antibiotic resistance gene
or be modified to express proteins of interest
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The Many Faces of Plasmids
Transmission electron micrograph
Agarose gelGraphic representation
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Protein Size
• Beta Lactamase– Ampicillin resistance
• Green Fluorescent Protein (GFP)– Aequorea victoria
jellyfish gene
• araC regulator protein– Regulates GFP
transcription
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Bacterial Transformation
Beta lactamase(ampicillin resistance)
pGLO plasmids
Bacterial chromosomal DNA
Cell wall
GFP
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Bacterial DNA
Plasmid DNA
Bacterial cell
Genomic DNA
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Transcriptional Regulation
• Lactose operon
• Arabinose operon
• pGLO plasmid
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Transcriptional Regulation
B A DaraC
B A DaraC
RNA Polymerase
Effector (Arabinose)
araC B A D
ara Operon
RNA Polymerase
Z Y A
Z Y ALacI
Effector (Lactose)
Z Y ALacI
lac Operon
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Gene Regulation
RNA Polymerase
araC
ara GFP Operon
GFP Gene
araC GFP Gene
araC GFP Gene
Effector (Arabinose)
B A DaraC
B A DaraC
RNA Polymerase
Effector (Arabinose)
araC B A D
ara Operon
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Methods of Transformation
• Electroporation– Electrical shock makes cell membranes
permeable to DNA
• Calcium Chloride/Heat-Shock– Chemically-competent cells uptake DNA after
heat shock
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Transformation Procedure
• Suspend bacterial colonies in Transformation solution
• Add pGLO plasmid DNA
• Place tubes in ice
• Heat-shock at 42°C and place on ice
• Incubate with nutrient broth
• Streak plates
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Reasons for Performing Each Transformation Step?
1. Transformation solution = CaCI2
Positive charge of Ca++ ions shields negative charge of DNA phosphates
Ca++
Ca++
OCH2
O
P O
O
OBase
CH2
O
P
O
O
O
Base
OH
Sugar
Sugar
OCa++
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Why Perform Each Transformation Step?
2. Incubate on iceslows fluid cell membrane
3. Heat-shockIncreases permeability of membranes
4. Nutrient broth incubationAllows beta-lactamase expression
Beta-lactamase(ampicillin resistance)
Cell wall
GFP
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What is Nutrient Broth? • Luria-Bertani (LB) broth
• Medium that contains nutrients for bacterial growth and gene expression– Carbohydrates– Amino acids– Nucleotides– Salts– Vitamins
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Grow? Glow?
• Follow protocol
• On which plates will colonies grow?
• Which colonies will glow?
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Volume Measurement
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GFP Chromatography Kit
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GFP Purification Procedures
Day 3Day 2
Day 1
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Why Use Chromatography?
• To purify a single recombinant protein of interest from over 4,000 naturally occuring E. coli gene products.
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Column Chromatography
• Chromatography used for protein purification– Size exclusion– Ion exchange– Hydrophobic
interaction
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HydrophobicInteractions
Aqueous solution = hydrophobic
High salt = hydrophobic
Hydrophobic bead
NH
H
H+
H
-+
+
O
S
O
O O- -
O
S
OO
O
-
--+
+
-
+
+
-
+ +
-+
+
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Hydrophobic Interaction Chromatography:Steps 1–3 1. Add bacterial lysate to column matrix in
high salt buffer
2. Wash less hydrophobic proteins from column in low salt buffer
3. Elute GFP from column with no salt buffer
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Step 1: Hydrophobic Interaction Chromatography
• Add bacterial lysate to column matrix in high salt buffer– Hydrophobic
proteins interact with column
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Step 2: Hydrophobic Interaction Chromatography
• Wash less hydrophobic from column with low salt buffer– Less hydrophobic E.
coli proteins fall from column
– GFP remains bound to the column
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Step 3: Hydrophobic Interaction Chromatography
• Elute GFP from column by adding no salt buffer
GFP– Released from
column matrix– Flows through the
column
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Helpful Hints: Hydrophobic Interaction Chromatography • Add a small piece of
paper to collection tube where column seats to insure column flow
• Rest pipette tip on side of column to avoid column bed disturbance when adding solutions
• Drain until the meniscus is just above the matrix for best separation