pawlotsky jm résist tt hcv 2014

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Hépatite C: Résistance aux Traitements Prof. Jean-Michel Pawlotsky CNR des Hépatites B, C et delta Laboratoire de Virologie & INSERM U635 Hôpital Henri Mondor Université Paris XII Créteil

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Page 1: Pawlotsky jm  résist tt hcv 2014

Hépatite C: Résistanceaux Traitements

Prof. Jean-Michel Pawlotsky

CNR des Hépatites B, C et deltaLaboratoire de Virologie & INSERM U635

Hôpital Henri MondorUniversité Paris XII

Créteil

Page 2: Pawlotsky jm  résist tt hcv 2014

HCV Resistance

• IFN--ribavirin treatment failure

• HCV resistance to DAAs

• Treatment Failure with the combination of Peg-IFNa, ribavirin and a DAA

• HCV Resistance in All-oral, IFN-free regimens

Page 3: Pawlotsky jm  résist tt hcv 2014

I

IFN--Ribavirine TreatmentFailure

Page 4: Pawlotsky jm  résist tt hcv 2014

Viral FactorsDisease

Characteristics

HostFactors

TreatmentSchedule

TreatmentFailure

Page 6: Pawlotsky jm  résist tt hcv 2014

SNP and SVR in the IDEAL Trial

IL28B

(Ge et al, Nature, 2009;461:399-401)

Page 7: Pawlotsky jm  résist tt hcv 2014

SVR in the IDEAL Trial Accordingto SNP rs12979860 (genotype 1)

(Ge et al., Nature 2009;461:399-401)

0%

20%

40%

60%

80%

100%

TTN=186

CTN=559

CCN=392

Su

stai

ned

vir

olo

gic

al r

esp

on

se (

%)

Page 8: Pawlotsky jm  résist tt hcv 2014

Geographic Distribution

(Thomas et al, Nature, 2009;461:798-801)

Page 9: Pawlotsky jm  résist tt hcv 2014

Viral Kinetics According to to SNP rs12979860

-3.0

-2.0

-1.0

0

Weeks

Mea

n H

CV

RN

A D

ecre

ase

(Lo

g10 IU

/mL

)

-4.0

-5.0

2 4 120

-6.0

CTTT

CC

p < 0.001

(Thompson et al., Gastroenterology 2010:139;120-9)

Page 10: Pawlotsky jm  résist tt hcv 2014

VK on High-Dose Peg-IFNa According to IL28B Genotype

-6

-5

-4

-3

-2

-1

0

0 4 8 12 16 20 24

Weeks of therapyH

CV

RN

A r

edu

ctio

n (

Lo

g10

IU/m

L)

TT

CT

NS

P=0.045

P=0.021

P=0.004

P=0.0005

(Chevaliez S, et al., Gastroenterology 2011;141:119-127)

Page 11: Pawlotsky jm  résist tt hcv 2014

SVR Predictors

Odds Ratio 95% CI p-value

rs12979860 CC vs non-CC 5.2 4.1 6.7 <0.0001

HCV RNA ≤ 600,000 IU/mL 3.1 2.3 4.1 <0.0001

Caucasian vs African American 2.8 2.0 4.0 <0.0001

Hispanic vs African American 2.1 1.3 3.6 0.004

METAVIR score ≤F2 2.7 1.8 4.0 <0.0001

Fasting blood sugar < 5.6 mmol/L 1.7 1.3 2.2 <0.0001

(Thompson et al., Gastroenterology 2010;139:1181-9)

Page 12: Pawlotsky jm  résist tt hcv 2014

Summary

• In patients infected with HCV genotype 1, the rs12979860 genotype:

• Is strongly associated with the SVR

• Explains 60% of the ethnic influence on SVR

• Influences HCV kinetics on therapy

• Is probably a marker of patient cell “resistance“ to the effect of IFN- through mechanisms that remain to be elucidated

Page 13: Pawlotsky jm  résist tt hcv 2014

Incidence of Peg-IFN-RibavirinTreatment Failures

2%

0

15

30

45

60 54%48%

58%

24%

16% 18%

Genotype 1 Genotypes 2/3

PEG-IFN-α2a+ribavirin (Fried et al)

PEG-IFN-α2a+ribavirin (Hadziyannis et al)

PEG-IFN-α2b+ribavirin (Manns et al)

(Manns et al, Lancet 2001 ; Fried et al, N Engl J Med 2002 ; Hadziyannis et al, Ann Intern Med 2004)

Page 14: Pawlotsky jm  résist tt hcv 2014

HCV Kinetics by GenotypeEC-sponsored DITTO-Trial

(Pawlotsky et al., manuscript in preparation)

0

1

2

3

4

5

6

7 HCV RNA (log IU/ml)

0 4 7 8 15 22 291-7-28

Genotype 4

Genotype 1

Genotype 3

* = significant difference, 4 and 1 vs 3

*

*

**

* **

Quantitative assay cutoff

Qualitative assay cutoff

Page 15: Pawlotsky jm  résist tt hcv 2014

HCV Kinetics by GenotypeEC-sponsored DITTO-Trial

0

1

2

3

4

5

6

7 HCV RNA (log IU/ml)

0 4 7 8 15 22 291-7-28

Genotype 4

Genotype 1

Genotype 3

* = significant difference, 4 and 1 vs 3

*

*

**

* **

Quantitative assay cutoff

Qualitative assay cutoff

(Pawlotsky et al., manuscript in preparation)

Page 16: Pawlotsky jm  résist tt hcv 2014

HCV Kinetics by GenotypeEC-sponsored DITTO-Trial

0

1

2

3

4

5

6

7 HCV RNA (log IU/ml)

0 4 7 8 15 22 291-7-28

Genotype 4

Genotype 1

Genotype 3

* = significant difference, 4 and 1 vs 3

*

*

**

* **

Quantitative assay cutoff

Qualitative assay cutoff

(Pawlotsky et al., manuscript in preparation)

Page 17: Pawlotsky jm  résist tt hcv 2014

HCV Kinetics by GenotypeEC-sponsored DITTO-Trial

0

1

2

3

4

5

6

7 HCV RNA (log IU/ml)

0 4 7 8 15 22 291-7-28

Genotype 4

Genotype 1

Genotype 3

* = significant difference, 4 and 1 vs 3

*

*

**

* **

Quantitative assay cutoff

Qualitative assay cutoff

(Pawlotsky et al., manuscript in preparation)

Page 18: Pawlotsky jm  résist tt hcv 2014

Summary

• HCV resistance to IFN- antiviral effect exists

• Its molecular mechanisms are unknown and probably complex

• It accounts for only a small part of IFN--based treatment failures

Page 19: Pawlotsky jm  résist tt hcv 2014

II

HCV resistance to DAAs

Page 20: Pawlotsky jm  résist tt hcv 2014

HCV Quasispecies

Major viral population

Intermediate viral populations

Minor viral populations

Page 21: Pawlotsky jm  résist tt hcv 2014

Mechanisms of resistance

Page 22: Pawlotsky jm  résist tt hcv 2014

sensitive

resistant

Mechanisms of Resistance

Page 23: Pawlotsky jm  résist tt hcv 2014

sensitive

resistant

Drug

Mechanisms of Resistance

Page 24: Pawlotsky jm  résist tt hcv 2014

sensitive

resistant

Drug

resistant

Mechanisms of Resistance

sensitive

Page 25: Pawlotsky jm  résist tt hcv 2014

sensitive

resistant

Drug Stop drug

resistant

Mechanisms of Resistance

sensitive

Page 26: Pawlotsky jm  résist tt hcv 2014

sensitive

resistant

sensitive

resistant

Drug Stop drug

resistant

Mechanisms of Resistance

sensitive

Page 27: Pawlotsky jm  résist tt hcv 2014

sensitive

resistant

sensitive

resistant + fit

Drug Stop drug

resistant

Mechanisms of Resistance

sensitive

Page 28: Pawlotsky jm  résist tt hcv 2014

sensitive

resistant

Drug Stop drug

resistant

Mechanisms of Resistance

sensitive

resistant + very fit

sensitive

Page 29: Pawlotsky jm  résist tt hcv 2014

Chronic HCV infection is curable

by therapy

Page 30: Pawlotsky jm  résist tt hcv 2014

sensitive

resistant

Mechanisms of Resistance

Page 31: Pawlotsky jm  résist tt hcv 2014

sensitive

resistant

Drug

resistant

Mechanisms of Resistance

Page 32: Pawlotsky jm  résist tt hcv 2014

sensitive

resistant

Drug Stop drug

resistant

Mechanisms of Resistance

resistant

Page 33: Pawlotsky jm  résist tt hcv 2014

HCV resistance to DAAs

Page 34: Pawlotsky jm  résist tt hcv 2014

HCV Life Cycle

(Popescu & Dubuisson, Biol Cell 2009;102:63-74)

Page 35: Pawlotsky jm  résist tt hcv 2014

Barrier to Resistance

Low-barrier drug High-barrier drug

Page 36: Pawlotsky jm  résist tt hcv 2014

DAAs in Development

• NS3/4A protease inhibitors

• Inhibitors of HCV replication•Nucleoside/nucleotide analogue inhibitors

of RdRp•Non-nucleoside inhibitors of RdRp (NNIs)•NS5A inhibitors•Cyclophylin inhibitors

Page 37: Pawlotsky jm  résist tt hcv 2014

NS3/4A Protease Inhibitors

(Raney et al., J Biol Chem 2010:285:22725-31)

Page 38: Pawlotsky jm  résist tt hcv 2014

NS3/4A Protease Inhibitors

Drug Phase Dose DurationMedian/mean log HCV RNA

reduction

Telaprevir (Janssen) Approved 750 mg q8h 14 days -4.4

Boceprevir (Merck) Approved 400 mg tid 7 days -1.6

Simeprevir (Janssen) III 200 mg qd 7 days -4.1

Faldaprevir (BI) III 240 mg qd 14 days -4.0

Asunaprevir (BMS) III 300 mg bid 3 days -3.3

ABT-450/r (AbbVie) III 200 mg qd 3 days -4.1

Danoprevir/r (Roche) II 200 mg q8h 14 days -3.8

Sovaprevir (Achillion) II 600 mg qd 5 days -3.8

GS-9451 (Gilead) II 400 mg qd 3 days -3.5

IDX320 (Idenix) II 400 mg qd 3 days -3.3

Vaniprevir (Merck) Japan 700 mg bid 8 days -4.7

MK-5172 (2nd-gen, Merck) II 400 mg qd 7 days -5.4

ACH-2684 (2nd-gen, Achillion) Ib 400 mg qd 3 days -4.0

Page 39: Pawlotsky jm  résist tt hcv 2014

Asp168

Ala156

Arg155

Thr54

Val36

(Pawlotsky J-M, Ther Adv Gastroenterol 2009;2: 205-219)

Amino Acid Substitutions Associated with PI Resistance

Page 40: Pawlotsky jm  résist tt hcv 2014

MK-5172 and Boceprevir Resistance-Associated Variants

(Lahser et al., AASLD 2012)

Page 41: Pawlotsky jm  résist tt hcv 2014

MK-5172 Resistance Profile

1a W

T

1a_V

36M

1a_R

155K

1a_T

54S

1a_A

156S

1a D

168A

1a_V

36M

_R15

5K

1a_T

54S_R

155K

1a R

155K

/D16

8N

1b W

T

1b A

156S

1b A

156T

1b D

168Y

0.1

1.0

10.0

100.0

1000.0

10000.0

MK-5172BMS-032

simeprevirGS-9551

boceprevirtelaprevir

MK-5172 BMS-032 simeprevir GS-9551 boceprevir telaprevir

Re

plic

on

EC

90

(n

M)

(Lahser et al., AASLD 2012)

Page 42: Pawlotsky jm  résist tt hcv 2014

CatalyticSite

Nucleoside/Nucleotide Analogue Inhibitors of HCV RdRp

Page 43: Pawlotsky jm  résist tt hcv 2014

Drug Phase Dose DurationMedian/mean logHCV RNA level

reduction

Sofosbuvir (Gilead) III 400 mg qd 3 days -3.7

VX-135 (ALS-2200, Vertex) II 200 mg qd 7 days -4.5

Mericitabine (Roche) II 1500 mg bid 14 days -2.7

Nucleoside/Nucleotide Analogue Inhibitors of HCV RdRp

Page 44: Pawlotsky jm  résist tt hcv 2014

2’C-Me-ATP in the catalytic site

(Migliaccio et al., J Biol Chem 2003;278:49164-70)

HCV Resistance to 2’-C-Methyl Nucleoside Inhibitors

Page 45: Pawlotsky jm  résist tt hcv 2014

Sofosbuvir Resistance

• Sofosbuvir binds to the highly conserved catalytic site of the HCV RdRp

• S282T• Is the only known aa substitution conferring phenotypic

resistance to sofosbuvir• Is associated with low-level resistance (<20-fold) in vitro• Results in a severe reduction of replication capacity in

vitro and in vivo

• No S282T variants found at baseline by population sequencing (n=1992) or deep sequencing (n=576)

(Gilead, data on file)

Page 46: Pawlotsky jm  résist tt hcv 2014

Non-Nucleoside Inhibitors (NNI)

Thumb I

Thumb II

Palm I

Palm II

A

BC

D

Page 47: Pawlotsky jm  résist tt hcv 2014

Non-Nucleoside Inhibitors of HCV RdRp (NNIs)

Drug Phase Dose DurationMedian/mean log

HCV RNA reduction

Tegobuvir (Gilead) II 40 mg bid 8 days -1.4

Setrobuvir (Roche) II 800 mg bid 3 days -2.9

Deleobuvir (BI207127, BI) II 800 mg q8h 3 days -3.1

ABT-333 (AbbVie) III 600 mg bid 2 days -1.5

ABT-072 (AbbVie) III 600 mg qd 3 days -1.6

Lomibuvir (VX-222, Vertex) II 750 mg bid 3 days -3.7

GS-9669 (Gilead) II 500 mg qd 3 days -3.1

BMS-791325 (BMS) II ? ? ?

TMC647055 (Janssen) Ib 1000 mg bid 6 days -3.4

Page 48: Pawlotsky jm  résist tt hcv 2014

Non-Nucleoside Inhibitors (NNI)

Thumb IDeleobuvir (BI207127)

BMS-791325 TMC647055

Thumb IIFilibuvir

Lomibuvir (VX-222)GS-9669

Palm ISetrobuvirABT-333ABT-072

Palm IITegobuvir

A

BC

D

Page 49: Pawlotsky jm  résist tt hcv 2014

HCV NNI Resistance Mutations

(courtesy of Isabel Najera, Roche)

FingersThumb

Palm

A

B

C

D

Page 50: Pawlotsky jm  résist tt hcv 2014

NS5A Protein

Domain III

Domain II

Domain I

Required for HCV RNA replication

Required for HCV viral particle assembly

May be involved in the release of HCV particles

NS5A Dimer

ER membrane

Cytosol

ER lumen

Page 51: Pawlotsky jm  résist tt hcv 2014

NS5A Inhibitors

Drug Phase Dose DurationMedian/mean log

HCV RNA reduction

Daclatasvir (BMS) III 10 mg qd 1 day -3.2

Ledipasvir (GS-5885, Gilead) III 30 mg qd 3 days -3.3

PPI-461 (Presidio) II 100 mg qd 3 days -3.7

PPI-668 (Presidio) II 240 mg qd 3 days -3.7

ACH-2928 (Achillion) II 60 mg qd 3 days -3.7

ABT-267 (AbbVie) III 200 mg qd 3 days -3.1

GSK2336805 (GSK) II 60 mg qd 1 day -3.0

BMS824393 (BMS) II 50 mg qd 3 days -3.9

Samatasvir (IDX719, Idenix) II 50 mg qd 3 days -3.7

MK-8742 (2nd-gen, Merck) Ib 50 mg qd 5 days -4.1

ACH-3102 (2nd-gen, Achillion) Ib 50 mg qd 1 day -3.8

GS-5816 (2nd-gen, Gilead) Ib 50 mg qd 3 days -4.0

Page 52: Pawlotsky jm  résist tt hcv 2014

NS5A Inhibitor Resistance

Primary and secondary mutation sites

NS5A Dimer, Domain I

Mutation Fold Resistance Replication Level, %a

Wild-type 1 100

F28S 7735 125 49

L31M 141 83 37

C92R 98 10 8

Y93H 749 81 21

Effect of NS5A Domain I Mutations on Replication and Daclatasvir Potency

Means standard deviations from transient-transfection assays with luciferase reporter replicon.

(Fridell et al., Hepatology 2011;54:1924; Aghemo & De Francesco Hepatology 2013;58:428)

Page 53: Pawlotsky jm  résist tt hcv 2014

MK-8742 Resistance Profile

(Merck, unpublished data)

1a WT

1a_M28V

1a_Q30R

1a_L31V

1a_L31F

1a_Y93H

1a_Y93N

1b WT

1b_Y93H

1b_L31V

0.001

0.01

0.1

1

10

100

1000

MK-8742

Daclatasver

GS-5885

MK-8742 Daclatasver GS-5885

Rep

lico

n E

C90

(n

M)

Page 54: Pawlotsky jm  résist tt hcv 2014

GS-5816, a 2nd-GenerationNS5A Inhibitor

(Gilead, data on file)

Page 55: Pawlotsky jm  résist tt hcv 2014

Cyclophilins

Cyclophilin A

Page 56: Pawlotsky jm  résist tt hcv 2014

Antiviral Efficacy of Cyclophylin Inhibitors

Drug Phase Dose DurationMedian/mean log HCV RNA

reduction

Alisporivir (DEBIO-025) III 1200 mg bid 14 days -3.6

SCY-465 II 900 mg qd 15 days -2.2

Page 57: Pawlotsky jm  résist tt hcv 2014

Alisporivir Resistance in vitro

3’UTRNS3 NS4

A BNS5A

ANS5B5’UTR neo

HCV

IRES

EMCV

IRES

Domain I Domain II Domain III

36 213 250 342 356 447

R262Q R318WA241P D320E

A241P + R262Q

A241P + R318W

R262Q + R318W

R318W + D320E

A241P + R262Q + R318W

A241P + R262Q + R318W +

D320E

Fold-changevs wt

1.02 1.58 1.37 3.67 1.72 3.89

(Coelmont et al., EASL 2009)

Page 58: Pawlotsky jm  résist tt hcv 2014

III

Treatment Failure with the Triple Combination of Peg-IFNa, Ribavirin and a DAA

Page 59: Pawlotsky jm  résist tt hcv 2014

Treatment failure on telaprevir or boceprevir triple combo

Page 60: Pawlotsky jm  résist tt hcv 2014

Pre-existing HCV Resistant Variants by UDPS

PatientIL28B

genotype

HCV subtype

pegIFN

RBV

TVR

Response

V36A/M

T54A/S V55A Q80

R/KR155K/T/Q

A156S/T/V

D168A/V/T/H

I170A/T

Pt-1 CT 1a NR - 90.0% - - 0.1% 0.4% 0.1% 0.5%Pt-2 CT 1a NR - - - - 0.1% 1.1% - 0.2%Pt-3 CT 1b RR - - - - 0.5% 0.5% - 0.2%Pt-4 TT 1b RR - 29.4% - - - 1.3% - 0.1%Pt-5 CT 1a RR - - - - 0.1% 2.9% 0.1% -Pt-6 CT 1b RR 4.2% - - - 0.1% 0.1% 0.1% 0.1%Pt-7 CT 1a SVR - 11.1% - 0.7% - 0.3% - 0.3%Pt-8 CT 1a SVR - - - - 0.1% 0.5% 0.1% -Pt-9 CC 1a SVR - - - - 0.6% 1.8% - -

Pt-10 CC 1a SVR - - - - 0.6% - - 0.1%Pt-11 TT 1a RR - - 100.0% 0.1% 6.0% 3.2% 0.1% 0.3%Pt-12 CT 1b SVR - - - - - 0.3% - 0.1%Pt-13 CT 1b SVR - - - - 0.2% 0.2% - 0.8%Pt-14 TT 1b NR - - - - 0.1% 0.2% - 0.1%Pt-15 CT 1b SVR - - - - 0.4% 0.2% 0.1% 0.1%Pt-16 CT 1a SVR - - 1.3% 0.5% 7.8% 0.2% 0.1% 0.1%Pt-17 CT 1a SVR - 47.4% - - 0.1% 0.4% 0.1% 0.1%Pt-18 CT 1b SVR - 20.0% - - 0.1% 0.4% 0.1% 0.1%

*SNP rs12979860

(Chevaliez S., et al. EASL 2011)

SVR: sustained virological response; RR: response-relapse; NR: non-response

Page 61: Pawlotsky jm  résist tt hcv 2014

Treatment Failures on Triple Combination with a DAA

• Due to an inadequate response to Peg-IFN and ribavirin

• Results in uncontrolled outgrowth of resistant HCV variants selected by the protease inhibitor

(Pawlotsky JM. Hepatology 2011;53:1742-51)

Page 62: Pawlotsky jm  résist tt hcv 2014

SVR According to Lead-in (SPRINT-2, non-black)

29%

39%

82%

% o

f p

atie

nts

wit

h S

VR

0

10

20

30

40

50

60

70

80

90

100

BOC/RGT BOC/PR48

82%

<1 log HCV RNA decrease

≥1 log HCV RNAdecrease

(Poordad et al., N Engl J Med 2011;364:1185-206)

Page 63: Pawlotsky jm  résist tt hcv 2014

0

20

40

60

80

100

Pat

ien

ts W

ith

Un

det

ecta

ble

HC

V

RN

A (

%)

Priornull-response

Prior partialresponse

Priorrelapse

(Foster et al., EASL 2011)

REALIZERx-experienced, Gen 1, Telaprevir

62%

94%

56%59%

15%

54%

<1 log decrease

≥1 log decrease

Overall

33%

82%

Page 64: Pawlotsky jm  résist tt hcv 2014

Median time to wild-type by population sequencing =7 months (95% CI: 5-8)

0.0

0.1

0.2

0.3

0.4

0.5

0.6

0.7

0.8

0.9

1.0

Pro

bab

ility

0 2 4 6 8 10 12 14 16 18

Time after treatment failure (months)

median

Probability of Telaprevir-Resistant Variant Detection

(Sullivan et al., EASL 2011)

Page 65: Pawlotsky jm  résist tt hcv 2014

Genotype 1b

0%

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

Time after treatment failure (years)

0   0.5   1   1.5   2

T54AT54SAll

Genotype 1a

% r

esis

tan

t vi

ral v

aria

nts

det

ecte

d

2

Time after treatment failure (years)

0.5 1 1.5       0%

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

V36M

T54SR155K

All

0

(Barnard et al., CROI 2011)

% V

aria

nt

vir

al r

ésis

tan

t d

étec

Post-Failure Follow-up (Boceprevir)

Page 66: Pawlotsky jm  résist tt hcv 2014

Practical Recommendations

• Prior to therapy:

• All patients should be considered as harboring minor viral populations that are resistant to telaprevir and boceprevir

• There is no indication for resistance testing at baseline

Page 67: Pawlotsky jm  résist tt hcv 2014

Practical Recommendations

• In case of treatment failure:

• Protease inhibitor-resistant viral populations have been enriched in every patient treated with telaprevir or boceprevir who did not clear infection

• There is no indication for resistance testing during and after therapy, as the result will have no impact on treatment decisions

• Resistance testing is required in clinical trials and global surveillance studies (research setting)

Page 68: Pawlotsky jm  résist tt hcv 2014

Treatment failure on simeprevir triple combo

Page 69: Pawlotsky jm  résist tt hcv 2014

(Jacobson et al., EASL 2013; Manns et al., EASL 2013)

80%

50%

SV

R24

rat

e (%

)

0

10

20

30

40

50

60

70

80

90

100

QUEST-1 QUEST-2

N=264 N=130

81%

50%

N=257 N=134

Placebo + PRSimeprevir + PR(RGT 12+12)

P + R + Simeprevir-QUEST-1/2Phase III, Treatment-naive, Gen 1

Page 70: Pawlotsky jm  résist tt hcv 2014

(Jacobson et al., AASLD 2013; Choe et al., AASLD 2013; FDA AVDAC, Oct 24, 2013)

P + R + Simeprevir-QUEST-1/2Role of HCV subtype and Q80K substitution

*Q80K prevalence in 1500 clinical specimens sent to an US commercial lab• GT 1a: 32.5%• GT 1b: 0.1%

Page 71: Pawlotsky jm  résist tt hcv 2014

Summary of Simeprevir Resistance Data

• Baseline Q80K polymorphism • Present in 41% of patients with genotype 1a infection

• Associated with lower SVR12 rate in QUEST-1

• Selection of NS3 protease substitutions in >90% of patients without SVR

• Genotype 1a: R155K alone, with mutations at positions 80 and/or 168;

• Genotype 1b: most common substitutions: D168V, Q80R+D168E

(Jacobson et al., EASL 2013; Manns et al., EASL 2013)

Page 72: Pawlotsky jm  résist tt hcv 2014

Treatment failure on sofosbuvir triple combo

Page 73: Pawlotsky jm  résist tt hcv 2014

89%

SV

R12

rat

e (%

)

0

10

20

30

40

50

60

70

80

90

100

Genotype 1(89%)

96%

100%

TOTAL

90%

P + R + Sofosbuvir-NEUTRINOPhase III, 12 weeks, Gen 1-4-5-6,

Treatment-naive

Genotype 5, 6(2%)

Genotype 4 (9%)

N=327 N=28N=292

(Lawitz et al., N Engl J Med 2013;368:1878-87)

N=7

Page 74: Pawlotsky jm  résist tt hcv 2014

Sofosbuvir Resistance in Phase III Trials

• S282T identified as primary mutation in all replicon genotypes (1–6)

• No genotypic or phenotypic resistance to sofosbuvir observed

• L159F identified in 3% of relapse patients with no phenotypic shift

Page 75: Pawlotsky jm  résist tt hcv 2014

IV

HCV Resistance in All-oral, IFN-free regimens

Page 76: Pawlotsky jm  résist tt hcv 2014

Principles

Page 77: Pawlotsky jm  résist tt hcv 2014

Barrier to Resistance

Low-barrier drug High-barrier drug

Page 78: Pawlotsky jm  résist tt hcv 2014

• Low barrier to resistance• First-generation protease inhibitors• Non-nucleoside inhibitors of RdRp• NS5A inhibitors (subtype 1a)

• High barrier to resistance• Nucleoside/nucleotide analogues• Cyclophylin inhibitors• NS5A inhibitors (subtypes other than 1a)• 2nd-generation protease and NS5A inhibitors

Barrier to Resistance

Page 79: Pawlotsky jm  résist tt hcv 2014

GS-9256 (PI) + Tegobuvir (NNI)

0 7 14 21 280

1

2

3

4

5

6

7

8

(<25 IU/mL)HC

V R

NA

IU

/mL

(L

og

)

Days

GS-9256 + tegobuvir

(Zeuzem et al., Hepatology 2012;55:749-58)

Page 80: Pawlotsky jm  résist tt hcv 2014

Danoprevir (PI) + Mericitabine (NI)INFORM-1 Trial

Days DaysDays

Danoprevir, 900 mg bid + RG7128Danoprevir, 900 mg bid + pegIFNand ribavirin Increasing doses of danoprevir and RG7128

(Gane et al., Lancet 2010;376:1467-757)

Page 81: Pawlotsky jm  résist tt hcv 2014

(Suzuki et al., EASL 2012)

Daclatasvir (NS5A)/Asunaprevir (PI)HCV Genotype 1b

Page 82: Pawlotsky jm  résist tt hcv 2014

IFN-free treatment failures

Page 83: Pawlotsky jm  résist tt hcv 2014

IFN-Free Combination OptionsNI PI NS5A NNI RBV

Nucleos(t)ide analogue-based strategies

Gilead Sofosbuvir Ledipasvir GS-9669 ±

Vertex/others VX-135 Simeprevir Daclatasvir ±

Roche Mericitabine Danoprevir/r Setrobuvir ±

Nucleoside-free triple combo strategies

Abbvie ABT-350/r ABT-267 ABT-333 ±

BMS Asunaprevir Daclatasvir BMS791325 ±

BI/Presidio Faldaprevir PPI-668 Deleobuvir ±

Janssen/GSK Simeprevir GSK2336805 TMC647055 ±

Nucleoside-free, second-generation double combo strategies

Merck MK-5172 MK-8742 ±

Achillion ACH-2684 ACH-3102 ±

Page 84: Pawlotsky jm  résist tt hcv 2014

12 wkCirrhosis

83%

N=12

SV

R12

rat

e (%

)

0

10

20

30

40

50

60

70

80

90

100

12 wkNo cirrhosis

97%

Sofosbuvir + RBV in Gen 2Phase III, 12 weeks, cirrhosis vs no cirrhosis

FISSION (Rx-naïve)

(FDA hearings, October 25, 2013)

N=61

92%

16 wk12 wk

90%

FUSION (Rx-experienced)

N=29 N=26

78%

16 wk12 wk

60%

N=10 N=9

No cirrhosis Cirrhosis

Page 85: Pawlotsky jm  résist tt hcv 2014

Sofosbuvir + RBV in Gen 3Phase III, Treatment-experienced

(Jacobson et al., N Engl J Med 2013;368:1867-77; Zeuzem et al., AASLD 2013; FDA hearings, October 25, 2013)

Series10

20

40

60

80

100

37

6385

19

6160

12 wks 16 wks 24 wks 12 wks 16 wks 24 wks

SV

R1

2, %

No cirrhosis Cirrhosis

FUSION (12 wk) FUSION (16 wk) VALENCE (24 wk)

N=38 N=40 N=100 N=26 N=23 N=45

Page 86: Pawlotsky jm  résist tt hcv 2014

96.4%

SV

R12

rat

e (%

)

0

10

20

30

40

50

60

70

80

90

100

SOF/LDV+RBV

99.1%

99.1%

SOF/LDV

93.6%

SOF/LDV+RBVSOF/LDV

12 weeks 24 weeks(Gilead press release, December 18, 2013)

N=109 N=111 N=109 N=111

Sofosbuvir/Ledipasvir FDC ± RBVION-2-Phase III, Gen 1, Rx-experienced, 20% cirrhosis

Page 87: Pawlotsky jm  résist tt hcv 2014

Sofosbuvir/Ledipasvir FDC ± RBVRelapse Pt with multidrug resistance

(Lawitz et al., AASLD 2013)

0

2

3

4

5

6

7

NS5B: No RAVsNS5A: L31M (25.5%)

NS5B: S282T (91.2%)NS5A: Q30L (4.5%)

L31M (>99%)Y93H (96.7%)

NS5B: S282T (8.0%)NS5A: Q30L (3.5%)

L31M (94.4%)L31V (4.7%)Y93H (98.2%)

LLOQ-TDLLOQ-TNDH

CV

RN

A (

log

10 IU

/mL

)

SOF/LDV 8 Weeks

Re-treatment:SOF/LDV + RBV

24 Weeks

Post-Treatment

Post-Treatment

SVR12

Page 88: Pawlotsky jm  résist tt hcv 2014

IFN-Free Combination OptionsNI PI NS5A NNI RBV

Nucleos(t)ide analogue-based strategies

Gilead Sofosbuvir Ledipasvir GS-9669 ±

Vertex/others VX-135 Simeprevir Daclatasvir ±

Roche Mericitabine Danoprevir/r Setrobuvir ±

Nucleoside-free triple combo strategies

Abbvie ABT-350/r ABT-267 ABT-333 ±

BMS Asunaprevir Daclatasvir BMS791325 ±

BI/Presidio Faldaprevir PPI-668 Deleobuvir ±

Janssen/GSK Simeprevir GSK2336805 TMC647055 ±

Nucleoside-free, second-generation double combo strategies

Merck MK-5172 MK-8742 ±

Achillion ACH-2684 ACH-3102 ±

Page 89: Pawlotsky jm  résist tt hcv 2014

96%

SV

R12

rat

e (%

)

0

10

20

30

40

50

60

70

80

90

100

All genotypes 1

95%

Subtype 1a

98%

Subtype 1b

ABT-450/r (PI) ± ABT-267 (NS5A) ± ABT-333 (NNI)SAPPHIRE I-Phase III, Genotype 1, Rx-naïve, N=631

(Abbvie press release, November 18, 2013)

Page 90: Pawlotsky jm  résist tt hcv 2014

IFN-Free Combination OptionsNI PI NS5A NNI RBV

Nucleos(t)ide analogue-based strategies

Gilead Sofosbuvir Ledipasvir GS-9669 ±

Vertex/others VX-135 Simeprevir Daclatasvir ±

Roche Mericitabine Danoprevir/r Setrobuvir ±

Nucleoside-free triple combo strategies

Abbvie ABT-350/r ABT-267 ABT-333 ±

BMS Asunaprevir Daclatasvir BMS791325 ±

BI/Presidio Faldaprevir PPI-668 Deleobuvir ±

Janssen/GSK Simeprevir GSK2336805 TMC647055 ±

Nucleoside-free, second-generation double combo strategies

Merck MK-5172 MK-8742 ±

Achillion ACH-2684 ACH-3102 ±

Page 91: Pawlotsky jm  résist tt hcv 2014

(Lawitz et al., EASL 2013)

MK-5172 (2nd-gen PI) + MK-8742 (2nd-gen NS5A)C-WORTHY, Gen 1, Rx-naive, noncirrhotic, 12 wks

5172+ 8742 20 mg

+ RBV

96%

SV

R12

rat

e (%

)

0

10

20

30

40

50

60

70

80

90

100

N=24

89%

N=27

100%

N=12

5172+ 8742 50 mg

+ RBV

5172+ 8742 50 mg

No RBV

Page 92: Pawlotsky jm  résist tt hcv 2014

Conclusions

• In the real life, 5-15% of patients receiving all-oral, IFN-free regimens may fail to eradicate HCV

• In most cases, treatment failures will be associated with/due to multidrug resistant viruses

• Retreatment strategies will need to be well defined in this patients