medical decision making. 2 predictive values 57-years old, weight loss, numbness, mild fewer what is...
TRANSCRIPT
Medical decision making
2
Predictive values
• 57-years old, Weight loss, Numbness, Mild fewer• What is the probability of low back cancer?• Base on demographic prevalence ~20%• Should he receive the
• low-cost ESR-test with sensitivity of 78% and specificity of 67%
• Expensive MRI scanning with sensitivity and specificity of 95%
• surgery at once• be send home
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The threshold model for a patient with low back pain
• The doctor worries about cancer, should the doctor send him home, test, or treat him?
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The accuracy of a test
• Sensitivity; The ability to detect patients with the condition• Definition: The probability of a positive result in patients who
have the condition: True Positive rate• High sensitivity ↔ few false negative
• Specificity; The ability to detect patients without the condition• Definition: The probability of a negative result in patients who
do not have the condition: True negative rate or1- False Positive rate
• High specificity ↔ few false positive
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The accuracy of a test
• Accuracy = (TP + TN) / total N
Known truth
Positive D+ Negative D-
Test
Positive T+
TP (true-positive)
FP (false-positive)
Negative T-
FN (false-negative)
TN (true-negative)
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The accuracy of a ECG test for myocardial infarction
• Sensitivity:• TP ratio: 6/31 = 0.19
• Specificity:• TN ratio: 59/72 = 0.82
Known truth
MI Present MI Absent
Test
ST > 5mm
TP: 6 FP: 13
ST < 5mm
FN: 25 TN: 59
Total 31 72
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Predictive values
• Assuming 20% chance for this specific patient
• ESR test has sensitivity = 78% and specificity = 67% (Joines et al. 2001)
• TP = 78% of 200 = 156• TN = 67% of 800 = 536• FN = 200 – 156 = 44• FP = 800 – 536 = 264• 156 + 264 = 420 tested
positive• 44 + 536 = 580 tested
negative
D+ D-
Test
T+ TP: 156 FP: 264 420
T- FN: 44 TN: 536 580
Total
200 800 1000
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Predictive values
• PV+ = 156/420 = 0.37• PV- = 536/580 = 0.92• If the test is positive we are
37% sure that it is spinal cancer
• If it is negative we are 92 % sure it is not
D+ D-
Test
T+ TP: 156 FP: 264 420
T- FN: 44 TN: 536 580
Total
200 800 1000
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Predictive values of MRI scan is ESR tested positive
• Assuming 37% chance for this specific patient
• FMR test has sensitivity = 95% and specificity = 95% (Joines et al. 2001)
• PV+ = TP/(TP+FP) = 0.92• PV- = TN/(TN+FN) = 0.97
D+ D-
Test
T+ TP: 351.5
FP: 31.5 383
T- FN: 18.5
TN: 598.5
617
Total
370 630 1000
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Likelihood ratio
• Assuming 20% chance for this specific patient• ESR test has sensitivity = 78% and specificity = 67% (Joines et al.
2001)• Pretest odds = Prior probability / (1 - Prior probability) = 0.2 / (1 –
0.2) = 0.25• Likelihood ratio (LR) = sensitivity / false positive rate = 0.78 / (1 –
0.67) = 2.36• Posttest odds = 0.25*2.36 = 0.59
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Probability vs. odds
• Posttest odds = 0.59• PV+ = 0.37
1 1
0.59Posterior probability = 0.37
1+0.59
p oo p
p o
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Negative likelihood ratio
• Positive likelihood ratio (+LR) = 2.36 • Is the likelihood ratio that he has the disease if he is tested
positive• Negative likelihood ratio (-LR)• Is the likelihood ratio that he has the disease if he is tested
negative
- FN ratio 0.22LR= 0.33
TN ratio 0.67
+ TP ratioLR=
FP ratio
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Test with continuous outcome
• What if the test outcome is continuous? Which threshold should be chosen?
• Optimizing Specificity and sensitivity• Increasing sensitivity at to loss of specificity
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Receiver operating characteristics (ROC) curve
• X-axis: 1-Specificity• Y-axis: Sensitivity• The ROC curve describes the test.• Poor test → large overlap → ROC curve
close to diagonal• Good test → little overlap → ROC curve close
to vertical / horizontal
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Receiver operating characteristics (ROC) curve
From wikipedia
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ROC curve to test beast cancer by mammography
Status Normal1
Benign2
Probably benign
3
Suspicious4
Malignant5
Total
Cancer 1 0 6 11 12 30
No Cancar
9 2 11 8 0 30
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ROC curve to test beast cancer by mammography
• How good is the test? • Where to put the threshold?
Status Normal1
Benign2
Probably benign
3
Suspicious4
Malignant5
Total
Cancer 1 0 6 11 12 30
No Cancar
9 2 11 8 0 30
Threshold <1 1.5 2.5 3.5 4.5 >5
TPR (sensitivity)
30/30 = 1.00
29/30 = 0.97
29/30 = 0.97
23/30 = 0.77
12/30 = 0.40
0/30 = 0.00
FPR(1-specificity)
30/30 = 1.00
21/30 = 0.70
19/30 = 0.63
8/30 = 0.27
0/30 = 0.00
0/30 = 0.00
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ROC curve to test beast cancer by mammography
• How good is the test? • Where to put the threshold?
Threshold <1 1.5 2.5 3.5 4.5 >5
TPR (sensitivity)
1.00
0.97
0.97
0.77
0.40
0.00
FPR (1-specificity)
1.00
0.70
0.63
0.27
0.00
0.00
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The area under the ROC curve
• The area under the ROC gives the intrinsic accuracy of a diagnostic test and can be interpreted in several ways (see Hanley et al.):
• The average sensitivity for all values of specificity• The average specificity for all values of sensitivity• The probability that the diagnostic score of a diseased patient is
more of an indication of disease than the score of a patient without the disease.