managing environmental- molecular- and associated meta-data: the micro b3 information system
TRANSCRIPT
Managing
environmental and molecular data
and associated metadata:
The Micro B3 Information System
Microbial Genomics and
Bioinformatics Research Group
Renzo Kottmann
Rome, 2013-09-05
Micro B3 is financially supported by the Ocean of Tomorrow Grant # 287589
Question
How can we design data recording system to be able
to pull information from associated resources?
Question
How can we design data recording system to be able
to pull information from associated resources?
Answer
Work with associated resources
Question
How can we design data recording system to be able
to pull information from associated resources?
Answer
Work with associated resources
Work towards a common goal
Question
How can we design data recording system to be able
to pull information from associated resources?
Answer
Work with associated resources
Work towards a common goal
Be service oriented
Question
How can we design data recording system to be able
to pull information from associated resources?
Answer
Work with associated resources
Work towards a common goal
Be service oriented
Seek professional software development support
Work with other resources: Micro B3 Connected
A common goal
Metadata Integration
Pilot-OSD
Samples
Sample/DNA
Sample/Material
Sequences
Sample/Environmental data
App
Dropbox
CDI
Micro B3 Information System
Scientists
Be service oriented
RESTFul Web Services
Defined API
Standardized technologies
• OSGi
• JAX-RS
• Secured
OAuth
OpenID
Role based
Ocean Sampling Day App
Smartphone Application (Android, iPhone)
• Early, consistent, digital metadata acquisition
Megx: Integral part of Micro B3 Information System
Seek professional software development support
SME (>50)
Micro B3 is Open Source
Commercial friendly Apache 2 License.
Subversion
• https://projects.mpi-bremen.de/micro-b3/svn/
Source Code Browser
• https://colab.mpi-bremen.de/source/
Wiki
• https://colab.mpi-bremen.de/wiki
Issue Tracker
• https://colab.mpi-bremen.de/its/
Thanks for your attention
1st Marine Board Forum: Marine data Challenges: from Observation to Information
http://www.microb3.eu
http://twitter.com/Micro_B3http://www.oceansamplingday.org
Micro B3 is financially supported by the Ocean of Tomorrow Grant # 287589
This presentation by Renzo Kottmann is licensed
under a Creative Commons Attribution-
NonCommercial-ShareAlike 3.0 Unported License