LSM3241: Bioinformatics and Biocomputing Lecture 7: Molecular Modeling Software Prof. Chen Yu Zong Tel: Room 07-24, level 7, SOC1, National University of Singapore 2 Web-resources of molecular modeling software Universal Molecular Modeling Software List at NIH : Links to List of modeling software home pages and catalogue of programs at NIHUniversal Molecular Modeling Software List at NIH NIH NAR web-server issue 2003, 2004:NAR web-server issue Each July, NAR publishes an issue of web-based bio-software that includes molecular modeling Molecular modeling software developed at NUS: PEARLS: Program of Energetic Analysis of Receptor Ligand System MoViES: Molecular Vibrations Evaluation ServerPEARLS: Program of Energetic Analysis of Receptor Ligand System MoViES: Molecular Vibrations Evaluation Server 3 PEARLS 4 MoViES 5 Commercial Molecular Modeling Software at NUS SYBYL: Molecular modeling, drug analysis and visualization software from Tripos. Installed in Computational Science and Pharmacy labs.SYBYL: Molecular modeling, drug analysis and visualization software from Tripos Insight II: Modeling and simulation software from Accelrys. Installed in Computational science lab. Insight II: Modeling and simulation software from Accelrys Discover studio: a modeling, simulation, and informatics software from Accelrys. Two software, DS modeling and DS ViewerPro, installed in or licensed by life science labs.Discover studio: a modeling, simulation, and informatics software from AccelrysDS modeling DS ViewerPro 6 DS Modeling 7 Display style Default display style Fit to screen Solvent accessible surface Select Move Clip Torsion 8 DS Modeling 9 10 DS Modeling 11 DS Modeling 12 DS Modeling 13 DS Modeling 14 DS Modeling 15 DS Modeling 16 DS Modeling 17 DS Modeling 18 DS Modeling 19 DS Modeling 20 DS Modeling 21 DS Modeling 22 DS Modeling 23 DS Modeling 24 DS Modeling 25 DS Modeling 26 DS Modeling 27 DS Modeling 28 DS Modeling 29 DS Modeling 30 DS Modeling 31 DS Modeling 32 DS Modeling 33 DS Modeling 34 DS Modeling 35 DS Modeling 36 DS Modeling 37 DS Modeling 38 DS Modeling 39 DS Modeling 40 Summary of Todays lecture Web-resources of molecular modeling software. NUS molecular modeling software DS Modeling