kara miles-rockenfield in collaboration with the labs of drs. lynda ciuffetti 1 and p. andrew...
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Kara Miles-RockenfieldIn collaboration with the labs of
Drs. Lynda Ciuffetti1 and P. Andrew Karplus2
Purification, Crystallization, and
Mutagenesis of ToxB, a Host-Selective Toxin in
Pyrenophora tritici-repentis
1Department of Botany and Plant Pathology
2Department of Biochemistry and Biophysics
Tan Spot
One of the major diseases affecting wheat
Wide geographical distribution
Causes lightweight and shriveled grains
Results in 3-50% crop loss
…and we know what causes it!
(Strelkov and Lamari 2003)
Pyrenophora tritici-repentis
Fungus that causes tan-spot in wheat
Symptoms caused by Host-Selective Toxins Molecules
secreted by the fungus
Host-Selective Toxins
Produced by fungiSmall molecular weight moleculesProteins
Reproduce symptoms of diseasePathogen not required
Primary determinants of pathogenicity Toxic only to susceptible plants
Non-host plants not affected
Symptoms of HSTs
Necrosis Cell death
Chlorosis Breakdown of chlorophyll
Necrotic Lesions
Chlorosis
Healthy Leaf
HST of Ptr
ToxB Protein Causes chlorosis Multiple copies of the gene cause greater
chlorosis Inactive form toxb
Zone of Infiltration
Hypothesis
A specific region of the structure of ToxB is responsible for the toxicity
of the protein.
Project Goals
Purify ToxB from Ptr
MutagenesisImportant regions
of the gene for toxicity
First Goal
Purification of ToxB
Purification of ToxB
Protein Production in Crude Culture Filtrate
Plugs vs. Ground
Harvest Filtrate
Filters
Protein Precipitations
2-Step (NH4)2SO4
Chromatography
Cation Exchange
Fraction Analysis
Silver Stain, Western Blot, Protein Assay
Purification Results
Protein Analysis Western Blot Silver Stain BCA Protein
Assay
Additional purification needed
P F1 F2 W1 W2 W3 M E1 E2 E3 E4
ToxB
75
50
25
20
10
15
37
kD
Silver Stain
Western Blot
Second Goal
Mutagenesis of ToxB
Sequence Comparison
Differences between the sequences Deletion in ToxB Proline in toxb
Restriction sites present in both Divides protein into three regions
toxb MAPIFETAMLLAVAILPAALVSANCTANILNINEVVIATGCVPAGGNLIIRVGSDHSYLIRATVSCGLSLNPSQSFINGESLASGGRCToxB MAPIFKTTMLLAVAILPAALVSANCVANILNINEAVIATGCVPAGGELRIFVGSSHSYLIKATSSCGLSL-TNQVFINGESVQSGGRC
C COOH
H
CH2
NH
H2
CH2C
I II III
Chimeras
Chimeric ProteinsSwap Coding Regions
pCMR3 – BBbMAPIFKTTMLLAVAILPAALVSANCVANILNINEAVIATGCVPAGGELRIFVGSSHSYLIKATSSCGLSLNPSQSFINGESLASGGRC
pCMR4 – bbBMAPIFETAMLLAVAILPAALVSANCTANILNINEVVIATGCVPAGGNLIIRVGSDHSYLIRATVSCGLSL-TNQVFINGESVQSGGRC
pCMR5 – BbbMAPIFKTTMLLAVAILPAALVSANCVANILNINEAVIATGCVPAGGNLIIRVGSDHSYLIRATVSCGLSLNPSQSFINGESLASGGRC
pCMR6 – bBBMAPIFETAMLLAVAILPAALVSANCTANILNINEVVIATGCVPAGGELRIFVGSSHSYLIKATSSCGLSL-TNQVFINGESVQSGGRC
pCMR7 – BbBMAPIFKTTMLLAVAILPAALVSANCVANILNINEAVIATGCVPAGGNLIIRVGSDHSYLIRATVSCGLSL-TNQVFINGESVQSGGRC
pCMR8 – bBbMAPIFETAMLLAVAILPAALVSANCTANILNINEVVIATGCVPAGGELRIFVGSSHSYLIKATSSCGLSLNPSQSFINGESLASGGRC
I II III
pCMR2-ToxB3267 bp
ampicillin
ToxB
pUC ori
EcoRI (702)
NotI (1045)
BsaI (924)
BsaI (2414) BseYI (845)
BseYI (1764)
pCMR1-toxb3270 bp
ampicillin
toxb
pUC ori
EcoRI (702)
NotI (1048)
BsaI (924)
BsaI (2417) BseYI (845)
BseYI (1767)
ToxB/toxb Plasmids
Subcloned into pBSII One site each of
BseYI and BsaII
IIIII
III
III
Expression of Chimeras
Subcloning into expression vector pPICZB
Transformation into Pichia pastorisExpression of chimerasSecretes protein
Summary of Purification
Partial purification of ToxB
Next Steps of Purification
Finish purification Crystallization of ToxB 3-D Structure
Summary of Mutagenesis
Generation of 5 of 6 chimeras
Two chimeras transformed into Pichia
BBb bbB Bbb bBB BbB bBb
BBb bbB Bbb bBB BbB bBb
Next Steps of Mutagenesis
Finish generation of chimerasTransform into PichiaBioassayAdditional chimeras?
Acknowledgements
HHMI URISC Dr. Lynda Ciuffetti Dr. P. Andrew Karplus Viola Manning Dr. Iovanna Pandelova Dr. Kevin Ahern