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MICROSATELLITE LETTERS Isolation and characterization of microsatellite markers for the neotropical tree, Pachira quinata (Malvaceae) Paul D. Rymer Stephen Harris David Boshier Received: 4 November 2013 / Accepted: 25 November 2013 Ó Springer Science+Business Media Dordrecht 2014 Abstract Twelve microsatellite loci were developed from a genomic library enriched for SSRs of Pachira quniata, a canopy tree species of dry and some humid forests in the neotropics (Central and northern South America). Genotyping of 30 trees from one population on the Pacific coast of Nicaragua was successfully performed. The loci were across amplified in related species. These microsatellites will be used to compare regional population structuring and mating patterns in fragmented landscapes. Keywords Malvaceae Bombacaceae SSR markers Neotropical forest Pachira quinata (Jacq.) (Alverson 1994) (syn: Bombac- opsis quinata) is a medium to large-size deciduous tree, highly valued for its timber within its native range from Honduras in Central America, to Colombia and Venezuela in South America (listed as vulnerable by IUCN). It is hermaphroditic, largely self-incompatible, and principally bat pollinated (Sandiford 1998). We aimed to characterize highly polymorphic micro- satellite (SSR) markers to be used in future studies on the distribution and abundance of neutral genetic variation, and the estimation of mating patterns in natural populations. Seed from one P. quinata tree collected from Nambaras, Nicaragua (12°10 0 N, 85°38 0 W) was extracted using a QIAGEN DNeasy plant mini kit to obtain total genomic DNA. The microsatellite-enriched library was constructed using the protocol described by Glenn and Schable (2005), with minor modifications (McPherson et al. 2008). Fifty clones enriched with the mixed probes and two hun- dred and twenty AG-rich clones were ethanol purified and sequenced using universal M13 primers and BigDye termi- nator version 3.1 (AppliedBiosystems). Fifty-one of these sequences contained SSRs (see Appendix for sequences), 27 of which were suitable to design locus-specific primers based on primer3 software and NETPRIMER (Premier biosoft). Twenty-two were synthesized and tested as unlabeled pro- ducts, 15 were selected for genotyping analysis being labeled with fluorescent dyes (6FAM, PET, VIC and NED; Applied Biosystems) and, of these, 12 loci were informative (Table 1). DNA extracts from 30 individuals from a remnant forest in Nambaras (Nicaragua) were then genotyped. PCR amplifications were performed in an ABI Thermal cycler. Amplification conditions were 94 °C for 3 min; 30 cycles 94 °C for 30 s, 60 °C for 30 s, 72 °C for 45 s; and a final extension at 72 °C for 10 min. Yorkshire Biosciences TAQ polymerase, 109 buffer and MgCl 2 , New England Biolabs dNTPs and BSA were used in all polymerase chain reac- tions (PCR). Reaction volume 10 uL: 19 buffer; 2.0 mM MgCl2; 0.15 mM of each dNTP; 0.2 ng BSA; 0.25 mM reverse (R) and forward-labelled (F) primers (Table 1); 0.5 U of TAQ. PCR products were run with Applied Biosys- tems GeneScan LIZ-500 size standard on a 3730xl sequencer. Fragment sizes were scored using ABI PRISM GeneMapper version 4.0 software (Applied Biosystems). Estimates of genetic variation were calculated in GenAlEx. Hardy–Weinberg equilibrium (HWE) and linkage dis- equilibrium were tested using the exact test in Arlequin, P. D. Rymer (&) Hawkesbury Institute for the Environment, University of Western Sydney, Bourke Street, Richmond, NSW 2753, Australia e-mail: [email protected] P. D. Rymer S. Harris D. Boshier Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK 123 Conservation Genet Resour DOI 10.1007/s12686-013-0097-0

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Page 1: Isolation and characterization of microsatellite markers for the neotropical tree, Pachira quinata (Malvaceae)

MICROSATELLITE LETTERS

Isolation and characterization of microsatellite markersfor the neotropical tree, Pachira quinata (Malvaceae)

Paul D. Rymer • Stephen Harris • David Boshier

Received: 4 November 2013 / Accepted: 25 November 2013

� Springer Science+Business Media Dordrecht 2014

Abstract Twelve microsatellite loci were developed

from a genomic library enriched for SSRs of Pachira

quniata, a canopy tree species of dry and some humid

forests in the neotropics (Central and northern South

America). Genotyping of 30 trees from one population on

the Pacific coast of Nicaragua was successfully performed.

The loci were across amplified in related species. These

microsatellites will be used to compare regional population

structuring and mating patterns in fragmented landscapes.

Keywords Malvaceae � Bombacaceae � SSR

markers � Neotropical forest

Pachira quinata (Jacq.) (Alverson 1994) (syn: Bombac-

opsis quinata) is a medium to large-size deciduous tree,

highly valued for its timber within its native range from

Honduras in Central America, to Colombia and Venezuela

in South America (listed as vulnerable by IUCN). It is

hermaphroditic, largely self-incompatible, and principally

bat pollinated (Sandiford 1998).

We aimed to characterize highly polymorphic micro-

satellite (SSR) markers to be used in future studies on the

distribution and abundance of neutral genetic variation, and

the estimation of mating patterns in natural populations.

Seed from one P. quinata tree collected from Nambaras,

Nicaragua (12�100N, 85�380W) was extracted using a

QIAGEN DNeasy plant mini kit to obtain total genomic

DNA. The microsatellite-enriched library was constructed

using the protocol described by Glenn and Schable (2005),

with minor modifications (McPherson et al. 2008).

Fifty clones enriched with the mixed probes and two hun-

dred and twenty AG-rich clones were ethanol purified and

sequenced using universal M13 primers and BigDye termi-

nator version 3.1 (AppliedBiosystems). Fifty-one of these

sequences contained SSRs (see Appendix for sequences), 27

of which were suitable to design locus-specific primers based

on primer3 software and NETPRIMER (Premier biosoft).

Twenty-two were synthesized and tested as unlabeled pro-

ducts, 15 were selected for genotyping analysis being labeled

with fluorescent dyes (6FAM, PET, VIC and NED; Applied

Biosystems) and, of these, 12 loci were informative (Table 1).

DNA extracts from 30 individuals from a remnant forest

in Nambaras (Nicaragua) were then genotyped. PCR

amplifications were performed in an ABI Thermal cycler.

Amplification conditions were 94 �C for 3 min; 30 cycles

94 �C for 30 s, 60 �C for 30 s, 72 �C for 45 s; and a final

extension at 72 �C for 10 min. Yorkshire Biosciences TAQ

polymerase, 109 buffer and MgCl2, New England Biolabs

dNTPs and BSA were used in all polymerase chain reac-

tions (PCR). Reaction volume 10 uL: 19 buffer; 2.0 mM

MgCl2; 0.15 mM of each dNTP; 0.2 ng BSA; 0.25 mM

reverse (R) and forward-labelled (F) primers (Table 1); 0.5

U of TAQ. PCR products were run with Applied Biosys-

tems GeneScan LIZ-500 size standard on a 3730xl

sequencer. Fragment sizes were scored using ABI PRISM

GeneMapper version 4.0 software (Applied Biosystems).

Estimates of genetic variation were calculated in GenAlEx.

Hardy–Weinberg equilibrium (HWE) and linkage dis-

equilibrium were tested using the exact test in Arlequin,

P. D. Rymer (&)

Hawkesbury Institute for the Environment, University of

Western Sydney, Bourke Street, Richmond, NSW 2753,

Australia

e-mail: [email protected]

P. D. Rymer � S. Harris � D. Boshier

Department of Plant Sciences, University of Oxford, South Parks

Road, Oxford OX1 3RB, UK

123

Conservation Genet Resour

DOI 10.1007/s12686-013-0097-0

Page 2: Isolation and characterization of microsatellite markers for the neotropical tree, Pachira quinata (Malvaceae)

with significance levels determined after 1,000 batches of

10,000 iterations each (Bonferroni corrections were

applied). Amplification of primers with other members of

the Malvaceae was performed once using the same PCR

conditions on two individuals. The PCR products were run

on a 1.5 % agarose gel and visualized under UV light with

ethidium bromide staining.

Twelve informative primer pairs were found (Table 1)

with up to 17 alleles per locus. The majority of repeat

regions found were dinucleotide repeats; however, two

trinucleotide were also characterized. Comparison of the

allele size ranges obtained with the expected size from the

clone sequence indicates that there is more allelic variation

in P. quinata than found in the single population. Loci

Bq30 and Bq23 were outside HWE (Table 1). None of the

132 pairwise tests of genotypic disequilibrium were sig-

nificant after Bonferroni corrections. The characterized

microsatellites were also tested for amplification with DNA

extracts of Pachira aquatic, Ceiba pentandra, Pseud-

obombax ellipticum and Adansonia digitata (Malvaceae)

obtained from Oxford herbarium (FHO). Cross-species

amplification was most successful with related species

(Table 2).

Overall, the variability recorded within a single popu-

lation of P. quinata, and the amplification success across

other taxa suggests that it will be possible to further

develop large-scale population genetic studies (Rossetto

et al. 2007). We are particularly interested in investigating

regional patterns of diversity and genetic structuring, as

well as, the consequences of population fragmentation on

mating patterns.

Acknowledgments This paper is an output from the Seedsource

project funded by the EC (FP6-2002-INCO-DEV-1) and from

research projects partly funded by the United Kingdom Department

Table 2 Cross species amplification of Pachira quinata SSR loci

SSR loci Pachira

aquatic

Ceiba

pentandra

Pseudobombax

ellipticum

Adansonia

digitata

Bq06 1 1 1 1

Bq08 1 1

Bq12 1 1 1 1

Bq16 1 1 1 1

Bq19 1 1 1 1

Bq20

Bq22 1 1

Bq23 1 1 1

Bq25 1 1 1

Bq29 1 1

Bq30 1

Bq31 1 1 1 1

1 = Amplified fragment of correct size

Ta

ble

1A

des

crip

tio

no

fP

ach

ira

qu

ina

taS

SR

loci

wit

hp

rim

erse

qu

ence

s,es

tim

ates

of

gen

etic

var

iati

on

,an

dte

stfo

rH

ard

y–

Wei

nb

erg

equ

ilib

riu

m

Nam

eF

wd

-seq

uen

ceR

ev-s

equ

ence

Siz

eR

epea

tN

aN

eI

Ho

He

UH

eF

a

Bq

06

CA

AC

TC

CG

TC

CC

TT

AT

CC

AA

GT

GA

TG

CC

CC

AC

TG

AT

TT

CT

44

7(G

A)1

26

3.5

41

1.4

05

0.5

17

0.7

18

0.7

30

0.2

79

ns

Bq

08

CG

GT

GT

CG

AT

TG

TG

AG

TA

TG

GC

CG

AT

GG

GT

TG

GC

TA

GA

AT

A1

88

(GA

)23

42

.15

10

.91

90

.56

70

.53

50

.54

4-

0.0

59

ns

Bq

12

TC

TT

TC

GG

AC

CA

AG

TT

GT

GA

TG

GG

AA

GA

CC

AG

GA

CT

GA

TT

25

5(G

A)1

38

3.8

54

1.6

16

0.6

33

0.7

41

0.7

53

0.1

45

ns

Bq

16

GC

AA

GG

AG

GA

GC

AG

GA

TA

GT

TC

GT

GA

TC

TA

AA

TG

CA

AG

AG

CA

20

9(G

A)2

08

3.1

14

1.5

64

0.6

33

0.6

79

0.6

90

0.0

67

ns

Bq

19

TT

CC

TA

TC

CT

GC

TC

CG

CT

AC

AT

CG

AG

CC

AA

AC

CT

TT

CC

TT

14

0(G

A)1

81

71

1.1

11

2.5

91

0.7

67

0.9

10

0.9

25

0.1

58

ns

Bq

20

GT

TT

CA

AA

CG

GA

GA

CA

TC

TT

GA

AG

GA

AA

GG

AG

CA

TA

GG

CA

AA

18

4(G

A)3

CC

(GA

)13

83

.16

31

.43

20

.60

00

.68

40

.69

50

.12

3n

s

Bq

22

TG

AT

TT

TG

AA

CC

AA

CC

AG

GA

GG

TG

CT

TC

AA

GG

AA

AA

CG

AA

19

7(C

A)1

18

2.1

61

1.2

58

0.4

33

0.5

37

0.5

46

0.1

93

ns

Bq

23

TT

GA

GT

GG

AA

GG

GG

TC

TT

TC

GC

AA

CA

TG

CG

TA

TG

TC

CT

GA

32

2(G

A)1

81

27

.36

42

.19

90

.40

70

.86

40

.88

10

.52

9*

**

Bq

25

AG

GT

CA

AG

GG

GT

TT

GG

AG

AG

AT

AT

GG

AG

CC

CA

AT

GA

CA

GC

19

6(A

AT

)6(A

AC

)51

37

.69

22

.24

30

.83

30

.87

00

.88

50

.04

2n

s

Bq

29

TC

TC

AC

CA

GT

AA

CC

AG

TT

TG

AT

GT

TA

AG

CA

TT

GC

AG

GA

CA

GG

AC

24

3(G

A)7

AT

(GA

)11

83

.98

21

.66

60

.83

30

.74

90

.76

2-

0.1

13

ns

Bq

30

CG

GT

TC

TT

CA

GG

CT

CA

TC

AC

CT

GT

CC

AC

AA

CG

AC

CA

TT

AA

AA

28

2(T

GA

)14

11

7.1

15

2.1

23

0.8

67

0.8

59

0.8

74

-0

.00

8*

**

Bq

31

TT

CT

GA

AG

CC

AG

CA

CA

AC

TC

CC

TC

CC

AC

TG

AC

CC

AG

AT

AA

24

3(G

A)1

59

5.9

80

1.9

00

0.8

33

0.8

33

0.8

47

-0

.00

1n

s

ns

no

n-s

ign

ifica

nt

**

*P

\0

.01

aC

hi

squ

are

test

for

HW

E

Conservation Genet Resour

123

Page 3: Isolation and characterization of microsatellite markers for the neotropical tree, Pachira quinata (Malvaceae)

for International Development (DFID) for the benefit of developing

countries (R5729, R6168, R6516 Forestry Research Programme). The

views expressed are not necessarily those of DFID.

Appendix

[Bq06

AATCNCCCGAGNACCTGTATNTTCTCAATGAATCC

TCACCAGACTGAAGAAAACTCAATCATGACAACA

TATGTAAGAAAAGGAAAACAAAGAAGGAATGATT

CTCACATTAATGAAAAACGGAAGCAGAAGAAAAG

ACTGACCCTTTTGGCATTTAAAACTTGCTCCCTTC

GGTTTGGCTCAACTCCTAATCCTGTGCATGAGACT

AGAACAAAATCTGTTTCCTGTCCAGTCTGCAGAA

CATCAGGGTAAAATTATTTTAGAATATCTGATCTT

CTTAATCGTATAGCATAACGACTAGGTAGTAACTT

CAACTCCGTCCCTTATCCAATCTAAGTTCCACATT

TTACTTGGATAAACATATTCACATTCAAATTAATA

ACCAAGTAGCTGACAAGGAATCACTATTAACAGC

CATATTGAGAACATGGAACATCCATAAGCATCCA

TAAAATGATAGTATAAACTATAGAGTGGTGTAAA

AATATGAGAGAGAGAGAGAGAGAGAGAGAAACT

GAAGATCCTTCTGTTGATGATCGAAGAGGAATAT

ACATAAAAACACTTACCGGCAAGGCTTTTATATAT

TCCAATATAAGCTTGAAACTCCGGGGGTCTTGCTT

CATTCCTGCTGTTCCTTCAATGGGCCTCTGCAGCA

AGAATAATACATAGAATTAGAAGCATTAAAAGCA

GCGAGAGTTATCATTTTGAACAAGGAGAGTAAGA

AATTTATAAATCATCAGAAATCAGTGGGGCATCA

CACTTCTGACGGCAGCGCTACTACAAAAATGGGT

GAAGAACTTTTACTGTAATCATCATTTNGGACTT

GATGACACCATGTCTTGTCCAATTAGGAGACGATA

AACAAAAACAATTACTAGTTTTTTGTTCGCAGAGT

[Bq07

ACAGCAAGAGAGAGAGAGAGAGAGAGAGGGCGA

GCGCCGGATGCACATGCTTCGCATTTAGTTTGCTT

AGGCACACATCAGACAATACGGTGCACCCCATGT

GCCTTATTTAAGCCTCTTTCTCCTTTCTTCAGCTT

CCACACTTCAATTCGTTTTCCCTTTTCCAAAATAA

ATAAATAAAAATCTATCTTTTTTCGAAGCCCAATT

GTTAAATATGTATGTGTGTGTATATATATATATAT

ATCATGAACCAACCAAGTATGTAGCAATATCTTG

GCATCTTTAGCTTGCCATAAACTAATTACTTCTTCT

CAAAGGGt

[Bq08

CGGTGTCGATTGTGAGTATGGTATGTTCTTTTTCTT

TCCCTTTTGTTTATTTGCACAAGAGAGAGAGAGA

GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG

AACATATTGTTTCTACTAAATAAACAACTAAAGA

AGTCAACAATCTGAATCAGTCAGCTACCTGCTATT

CTAGCCAACCCATCGGCAAACAGACAGCCAAAAA

TGAATAAATTGGTCATCTCTTTTCTATAGTTTCCGT

TCATTTCGTTTATTCTCTGTCTAATCTCTAGATTAT

AAGTGAAGCTACTAATTCTTGCAAGAATATCCAC

GGGATAGGCAAATGCAAAGTATTTCCAACAAGGA

TCGTTACAAACTTGGACGACGT

[Bq09

ACAATCATATTTGAATGGAAAAATCGTAACCCTTT

ACCTATATTGAGATAAGAACCCTATAATGGTAAA

GATGCCCCAATCAACTATAGAAGGATTGATGATA

AGTCAAAGATGTTTTTCAAAAACATAATCTAGTTA

ATGTGTTGTGGAGGTTGAAAGGAATCGAAACAGG

GTTTTTTCCCCCATATTTTGCTGTCAACGACAGCCG

GCGGCCAGCGGAGGCATTCGCCGGTTTCTGGGAAT

TTACAATTACCGGTTGAAGAAAAGAAGCTATGAG

AGAAAGAAACACAGACAGAGAGAGAGAGAGAGA

GAGAGAGAGAGAGAGAGAAGGAATATCTGAAAA

TGACAGGAAAGGAAAACTTCAGGTTTTTACAATG

ATCAAAACTCgCCGTTTCATTAAAAAAAATTGCAA

ATTAAGGTATATATTTTTATTACTATTTGCTGTCAT

TTCTATCTTTTATTTTTTATTTTTTTAATTATCACGT

GACTATTTTCGC

[Bq10

ACATGCATACACACACACACACACACCCACACAC

ACACACACACACATATATATATATATGGAATAGC

TTATACAGAAATCACATCGATCTCCAAATATCAAA

CTACCAAACCCATAGTGGTCTCCTTTTATTTTGATT

CAACCAAACGTAGCACACATGGCTGATATATCGAA

TTCCTATATTTGTTTAATAGCACTCGT

[Bq11

ACCGACATAAGCAAACAATCATTCACTCACATGA

TCCGTTGGCCTTGGCCTCTTCAATTTTTTACTCTC

TCACCTTTCTCGTTAGCTAGCTTTGTTTGCTTTCT

TCTTCTATTTTAAGTCCATAATTTAGTCTCTTTCT

ATCTCTTACGCCACCTTTTTTTTTTTTtGGAgATTT

tGGtGACtCGGtCCCTTTCgAATtACATTTtCtGGGTT

TTtGGTTTtGTtGGtGAATTtCGTTtAAGCGTTGtCAG

tGtCCGtCAtGAAtAGGGtGAACtGGGAAAtGGCATG

ATAACAgCGGGTtCCAAgAAAGGGtGGAGGCGGAt

AAGGAAGCAGGGGCtGTtGGTTTtCCAGTtCTtGTtG

tGGtCGTTTTANtCCAAtGTTTATtAAtGCtCTTTCCTt

GGAttCTTTCtCtCtCGTTtGCCtGTTTtCTAATTtAAAT

TTTtAAtGTTTTTtCCTTTTtgANnnAAAAATTTtCtCC

Conservation Genet Resour

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Page 4: Isolation and characterization of microsatellite markers for the neotropical tree, Pachira quinata (Malvaceae)

CATTTCttGGCGTTtGCATtCGGTTTTtGATTNCNTTT

tAttCAAGCTAACAgAGAAAGAGAGAAAGAGAGA

GAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGA

GAGAGAGAANCCTTGCTCGTNGATNCATGGTNTG

GGNTGCTCCNCAACCACAAGGAACTTAGGCAAA

GCTTNGAGAAAAGAACAAAATGAAGTTTATGAA

GCTTGGGTCGAAGCNTGAnGTCtTCCAAGTTGATG

GCAAATGCATCnGGTAAGATGGAGTTCTCTCACA

TTCTTTTCTTtTATAACAAgCCAGGaCAAATGTTCT

TTATNGTTGCTTCCTNTAAGCNGTTTCTTAACATC

TTGTTATCTTGTTNTGATTTGGTTTTGCCTCTCAT

TTTGTTTTCCGTTATGCTGTCTGCTCCTGACATGT

TTAATNGATATAAATTTTCCTTTATATTTTGCATG

GAAATCCGTATAGTTTTTGAGATGCAAGTTCATT

AGCTCTTGCTTCAAATCGATTTTTTACTGAATATG

TNTANGCTTATTCTATTTTGTATTGCTAGACTTGT

GTGT

[Bq12

ACAAATTCTTTCGGACCAAGTTGTGAGTCTCTCTC

TCTCTCTCTCTCTCTCTCATATGCACAAATGCATTG

GTAAGAAGAGGAAAGTCGAGTTAGTTTTTATTTAT

AGTGCAAAAAGAAGGAAAACACAGCATGCATGAC

TTTAATTTGCCCGGATTTTTCCCCTTGAAGGCCAT

TTGCAATTGGGACTTTTAAATTCAATGTGTTGAGG

ACTGAATTGGCTCAATTTGAGGCCCATAATAAATC

AGTCCTGGTCTTCCCACCGGCCGGCCTATTGATCT

CATTATCTAACATTATCTAAAATGGATTAGTATTT

GGATTACTTCATATATTGCACATTACTTATAAAAA

TTAAAATGATTTGAATTTAAAATAATTCAAATTTT

AAATAATTCAAAAATAAAATGATTCAAAACAAAA

ACGATTCAAATCGAAAATAAAACAAAAATTTAAA

AGCTTGAAATAAATTAATTCAAATTAATCTAAACA

AAAATCAACTCGATCAATCTATTTGATAGTTCTAC

GTGCAAAGATTTCGCTGTTTTTGCACGTTAAGATA

GTATTGATTGTGATGATAATTAGATAAATCATACA

TATCAATTAGGATTTAGATACTCTTAATTGATAAA

AATAAGCAATGGTCTCTCAACATATTTTCATATAG

TGGTAAGAGTTATCCAGAAGG

[Bq13

CATTCTATAACATCCATTCCTCATACCTTACCTCA

CTCACATATGACCAAGGAAGCATTCGGTCAACCC

TCATCATCATCATGATTTACCTAAATACATTTCA

ACCTTTTTCCACCTGAACCTTCAATTCCATATCA

AGATATGTTTTGGCTAGAATGGATAAAAACCAA

AGCCTAGCTAAGGGTGGGTTTCGGCCAAACACTT

CTTACCTAAAGGAATTTGAGTTTCTAAGCTTTTC

ATGAACACATATTCATCCCTTACTCAATACATGC

ACACACAAGAGCATGAATGGCATATGGTGGAGA

AGGTAACATGAACGGGTGGTCGGAAGAGGAGATC

CTTACCTTGGTGTTAGGAGGCTCACGACAACACTA

AGAAATGGGAATAAGCTTTCGACCAAAGCTTGAA

GATAGCTCTAAAAACCCAATCATTGAAAACCGTG

AGCAAGGATAAGAACTTAGGATCGAACTAAGAGA

TTTGAAATAAAATTTAGATGAAAATATAAAGGAG

AGAGAGAGAGGAATAATTTTTTCTCTTGGAGCTTA

CCTTAAATCTCCTTGGAATGATGTGTATGGGAGCT

TGAAGAAGCTTGATGGAGGTGGTAATGGAGGTAG

GAGGAAGAAAATGGAAGAAGAAGAAGAAGAAGA

AGAGAGAGAGTTAGTGGAAAATGTTGGAAAAGTA

AAAGTAGGTTAAAATGATGTGAAGGAAGTGTGTA

AGAGAAGATTGGTATCTTGCATGGGTTGGTGTGT

GAGTGGGATGGGAGAGTGTGTGAGTGGGAGACAT

GAAGTGATAGGTGTAAGGGTGAGTGGATGTGTGT

AAGAACACATGTCACATCATGTCTCCTTATCGAAA

TTTATGCTNGGAGCCAAAATCGAAACACGAAGAA

ATCATCGTATTTGACTCGGATTAAACTCTCAAAAG

TTAATTTAATATTTTTGAGAATATTTGAAAAGATC

AGGTTCGAAAAATCTCACCCGGATCATTAATTTGA

TTATTTTATTCTCAAATAACCTTAACAAGGCTTTA

AAGAGAATAAAATCGATTTAAGTACGAAAATTCA

TGAATCTTTCCTGGAGGTGTTACTGTTCACGAAAA

TAAGGACAAAACTATTAGGTTCAATTTTTGAGGCT

GTTTTTACAGTTCGACACACAAATCGAGGT

[Bq14

CATTGATATTCTGGTCCTCATAAAATATATTAGTG

TTT ATGTTCACATTTTTTGAATGACTATTTCTGTTA

ATATATTTATATGATGCGTATGAAGGATTTTAAGT

CATAATAATATTCATTTACTAATAATTAAAATTAA

TTAATTTTAATTTTTATGTCATATTCATTATCTTAT

TGTTAATATGGTTTTCTTATTTGTTTATTTTTTCCA

ATAAAAAATTTACTTATAAAAATGATATTTTCAAT

AACTTTCAAATAAAATATTTTATTAATTTTATCTT

CTTTTTCTTTTTCTTCTTCTTCTCTCTCTCTCTCTCT

CTCTCTCTCTCGCTCTTTTTTCCTACTTCATTCTTTT

TTCCCTTTCTTTCCCAAATAAAAAATAGGTTGCGA

AACAATTTTGAATTAAATTTCAATTTCATTAAATT

AAGGTTGAACTAAAACTTCGTTCAAGTTTAATATA

TAATTATAGATTATAAAAGTTATAGACATATTGTT

ATCGATTCATTCCATAAAACATATCTAGAAAATTA

ATTTTTACCGATTTAAAAACTGTCGATTATAGGTG

ATATGAGTTGATTGATGCTTCAATGGTGAACTTAT

AAGATCATAAAACCTATAAGATCACAAAAATTAG

ATAACATCTTAGTTTATATTGTGGGGTGCATCCTG

ATACTATATTTTGGGGtGCAtCCTGATTCTTAGATT

AATCAAGTGATTCAAAAAGTAAAAGTATACTAAG

ATTAAGCTCATACCAAGTGTATGTCACTTGCATC

TCTATATACAACGTGACATGT

Conservation Genet Resour

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Page 5: Isolation and characterization of microsatellite markers for the neotropical tree, Pachira quinata (Malvaceae)

[Bq15

ACTTCATCGGCTAGCCCAAAAACTCCATACTCATA

ACAGAATACTAGGCAAGGCCCAATAATAATTAAA

AAAATTAAAAATTAATTGTTGGACTCAATAAAAA

GGGCGGTCCTTAGTTCACCCAATAAAAGGAAGGT

TACAGAAGCTGCGTCGCGTTAGTGGGCAAAGAAA

GGTAGCTATCTAGGGTTTCCTTTTTCTTTCGAAAA

TGATTTACGACGTAAATTCCCCTCTCTTCCGCTCA

TTCCTCAGCCAGAAGGGCGGCTCCTCCGACAAG

AGGTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCT

CTCTCTCTCTCtCTTGTACGGATTTTTATGTTCATA

TTTGCGTTTTTTTTGGTCTGTCTCAGTTTCAATGTG

ATTAATTTGAATAATTATATTCATCGGGATTGAGT

AACTATTAAACGACGACGAAGTTCTTGATATGAA

GGTTTTTGTATAAAGATTAAAGCTGCTCGAGAGG

GAAACTTGTTTATTTCATCTACTATTCGGTTACAGA

TTAGAACAAAAGGTTTATTTTCGAAAGATTGTGAT

TGTAGACAATATGAATCTGATGTCTAGCATAAGAT

CACTTGTGTCTAATTTGTTTGACATATGTGGTTAAC

TTCTATGTGCACGGT

[Bq16

ACCTTGAAACCTTTATTACTTGGCAGGCAAGGAGG

AGCAGGATAGTTTTGTCTTAAAGGTGCCCTTTGCT

TTGGGCATATCTTTTACATTTTGCTGTTCTTATATtG

GGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC

TCTCTCTCGGCATCCGATCAAAAATTTGTTCCATA

AGACTGTCTTCCAAAACCTAGAATTTAAGATAAAA

TTGCTCTTGCATTTAGATCACGTGAGCCTGCCCTAG

GTGCTTTAGGCATAATTTATGTTATCTGAACTCGA

AATAAATGTCAAATTTAAGTATGCGT

[Bq17

ACTTCGACGTTGAATACGACCCTTTAGCCGCAGCC

TCTGCTGCTACTGCTTCTTCTACTACCGTTGACGT

GGACATTGCAATTGTTGAAAGCGAGAGCTTCGTA

TCGACTCAAGGTTGGGACTCGGATATGGTGGTGG

ATTATAGGATAAACGAGGAGGAGTTTCATAAGAT

TAGCTTGTTGGATTGTGATTTTTTTATTCGGAAGC

CACCTGACCCTGATAATGATGTTTATGATTTCAGG

GAGGTTAGTGAGCTCTTGTTTTAGTTCTTTTCTTA

ACACACACACACACACACACACACACACACACAC

ACGCGCACACACACACGCGCACACATATATGTCA

TGGATTTTGGTTAATTTTTTGCTGCACTTCAAtTGT

TGtGtTAATTTTGTTAGCCTTTTGGATGtGGGtTTTA

CTTAAATTCTGTCTTAAAtTATTGTGTCTGGATTTT

TTTGATGTTATTTTTAAtGGTTTTTTGGGtTTTTTTT

TTTCTAGTAAAAAAGATTTCTGTCATTCATTAAA

AAGATGAACAATATGAGTATATAGTAGAACATA

TTAAATCAGGGACATTCTTGAGTTCGAAACATGTC

TTCCTGAATATTCAAACCATATTTTTGCTGGCACA

TGAGAAGCTTCATTTAATGGAGGCCTTGTGTGTG

AAAACCTGCATAAGTGGATAGCTGCTTTTCTGCCT

GGCTTCATTCACATAAGGTCCAATAGGTGAACAAT

CTACTCTGTTGATTGAATCTGTTTCATGCCTCCAAG

CACTCTCTCTTCGAGGATTATTCTTTGATAACCCTT

TTGCACGCTCAAGTGCTCTCTCACTGCANCCGTAA

CTTCTGGt

[Bq18

ACACACCTGACACAGCTTTTACAAAAATTCAAAC

AAAACTCAGTTTTTCTTTAGAACCCCACCAAACCA

ATTGAGACAGAATCACTTTAATCACCTCCCATTGA

GAAAAGTTAAAATCCTTACCATTTTTCACCGCTTC

AAAGAGCAATAATAATAAAAACCAGATCTTGCTC

TTGCGAAGTCCTAAACTTTTGGCCATCGATGGACT

GAATCAAATAAACAGAAAAGCAGAGTCATTTGCA

TTTTCTAATCCTTTGACAGGCTTATATATGCTACTA

TAATAAACAATTTTGAAGTTCGTTAGATAAAAAG

AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGA

CAAGCAAGAGGCTGAATTAATTTTCATTTCTGTTT

CTTCAGGTAGACAAAGTTTGCTTTTGGATGCACAT

TTCTGTAACATTTGATTTGTTACAATGAAGATCAA

ACAACTATGGGCTTAAGTAGTTTCTGTAGAATTTT

GTTTTTCATAAGTGAAACATGCACTTAATTGAGGG

AAAATAACTCATCTGATTTGCATAGCTTAgTCACG

AACCTGCTACCATTGCAGTGCGTGAGGATTGTATG

GGTGTGGCTGGTAAATTCAGCCTGCCTTGTTTGTG

GGAAGCAAAAAGCATGGAATACTGGTGATCCGTC

TCnAGGAAGCAATTAGC

[Bq19

ACGCAGCTACACTATAGCAATAGCCAATCCTACA

TACATATCAGGTGTAAGCTGATCACAAACATTCAT

CCTCAGATTTTGATATCAGAATTCAGAAGGGTGAG

AAGAAGAGTTACACAGTGAAGATTACAGAGCGGT

GTCACCTAGTTCGTTATATTGCAAAAACAAAATGA

GTTAAATTTTTTGATTTCAAAGTCACTTTATAATAA

TTTTTGGATATTTTTCTTTTATTTTTCATTTGCCCTT

CTTTGGATTTGATAAAAATAATTTTGGACTTCTCC

AAAGGCTAATCTGAGGCCTTTTTCGGCTTAACTAA

ATTAGGCTAATGAAATAATTATTTGGGCTTTCAGA

GTCCATAAGTGTAAGGAGGACCAGTGTAGAGCAA

CGTTAAAAACCCGAATCTTAATCCGGTCCAAACAG

TAAGCTAAGCAAAGTAACAAGGCCATGGGCTCCA

ATCCTAGGGTTAAGGAGAANCTCATATAAATAGC

CACTATCACTTGTTTCCTATCCTGCTCCGCTACCTC

AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA

GAGGAAGAAATGGTGTCTCTTAAGCTCCAGAAAC

GGCTCGCTGCGAGCGTTCTAAAGTGTGgGAAAGG

Conservation Genet Resour

123

Page 6: Isolation and characterization of microsatellite markers for the neotropical tree, Pachira quinata (Malvaceae)

AAAGGTTTGGCTCGATCCAAATGAAGTCAACGAG

ATCTCCATGGCCAACTCCCGTAAGTCTTCCTCCAT

TCTCTCTTATCAGTGCTCCAACACTTTTTCATTGTC

GTTATCATCAGTTTTAATTTTTATACACACACGCA

CACACACACATATATATGTATACATAAAACTGAG

GTTTAAGCTGCTTCTGGAAAATGAAAGCTGAAAAG

CCGAA

[Bq20

CGTTCGGTTTCAAACGGAGACATCTTGAATTTACT

CGCATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCC

TCTCTCCTCCGAGAAAATAAGAGAAAGTGGTAAT

TCCAAAAGCGTAAAATAACTAACCTTCTACAGTT

CTTCTTTCTTTCTCCTTTTCTGTTGTTTGCCTATGCT

CCTTTCCTCCGCAGCAAGCTTTCATTTTTCCTCTTT

CTTTTCCTCAGTCTTCCCCTGTCTCTCTGCTCTGTA

ATATTAGCATTTCTTTTCTTTAATTTTTATTTCTTTT

TCTGATTTTTGATTATGTCTTACTTTTATTTTTTTG

GTTTAATTAACATTTAAATTAATTTTTTAAACGAG

TGTTGTAATTACAGTGACTAAATGACACTGTAAGT

AGCCGTTGGAATTCGTCAACGATCCGAACGGGTC

TTTCATTGCTTTTGAAGCTTGGAAGTTGACTTGCA

ATATTAGTGAATGATTCAACTTTAACCTTGAATAA

ATCTCAAATAAGGATGAACCGAAAAAGAACCAAG

TTACTCATTGATGT

[Bq21

ACTTCTGGTATTTAAGCCGATAATAAAATAGAAA

CAGCCGTTTTGGGATTCGAATTTTATACCAGTTCA

ATGCTTATATTTGTTAAAGGCCAATTCAAAGCAT

GCTGTAGCAACTCCAGAGAGGAAAAAACCATTGA

AAACGTCAAGAAACTATGCAGAAAACATCTTACC

CTAAAGTAAAAGGACAAAAGAAAAAATAAGAAT

CAATTGGCAATGAGCAAAGGGATTCAAACCCGA

GTCCAAGAGACCCTTTGTCATGATTTAATCAATC

AACACAATTTTTTTGGGCAAGATTTGTCAACAGT

TGAACCAATGGAAAAGAATGGAATAGCAACTAGT

CTTTCAAGAAATGACTATGGGGGCAAGAATGCC

ATGGACTTAATTCAATTAGTATTTATTAGTTGTTA

CCATCAAGAAGGCCATAGCTATATGAAATTATTAT

TGCGTGATCAATAATCTAAGAAATAAAGACATTC

AGTTGAAGTGGGAAATTAAGTGAAGTTTGGTCAA

CAAATAGTGTATGGTTCTAGGCGTGGTAAATTCT

TTAATAAAAGAACCAAAGTTTGACCGCTCCTTA

CAGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCATAT

CTAATACGCAGACAAAGGATAAGCTTCATATTTAT

CCATAAGATCGTTGTGCATCCTACTGACAATTATC

TTCTATTTATTGATGTTCATCATCTGGAGAGGTGC

TCGGTAAGTGTCATCTTATTATCATCATACAAACA

TGATGGCTAGGCTGAAATTTATCAAACCCAGTTTT

TTATTTCAAATTCTGGTCAAATGTTCTTTGCCTGT

ATCAGAAAAGCTACACCATCTATGACTTTCATGAC

CTCTTTGTCAAACTGCAGTTAAGATAATGGCTCTG

GAGTAATGAGTTTAGCTCTTAAGCCTTTATCTTGC

CGGAGTTTGTAGATANNNTAAAGAAGAA

[Bq22

ACAGCTGTGGATACTTTAAAAGTGTCCTTCTACTT

AGGTCCTTCTCGAGGATACCAACAACAATTGTAG

GCACCGATGTGTAGATTACGGAATACAGCACACT

GCTCCACTCATTGATTGCAGTGGTCAAAGTGAAA

ACAAGTAAAGAGCACATACCTGCAAAGAACATGG

TAAAAGCTAAAAGTGCTCTTCTACAGATGAAATTT

CACTTTAATTGACCAAAAATGTGAGTCAAATTCTA

TTCCAAATTAAGTGTAAATTATGATTTTGAACCAA

CCAGGATCAAAATTCAATTATCTTTAACCTAATTG

AGCAGAGTATTTTACTTTTTTTATGTTTTGCTGCAT

GTAGGTTAGTCTAAATCACTAATACAAAAGGAGT

AAAAGATTAATCATACACACACACACACACACAC

ACATAAACTATTTTAGTCCGAATATTCGTTTTCCTT

GAAGCACCCATGTCCAACAGCAATACATATTCAC

ATATGGGATGAGGGTATGATTCTCCAAATATATGA

AAACTTGGAAAGAATTGAGCATACCCCTGTCGGA

CACATACTTGTATCCAACACTCATCCCTGAGTCGA

GTAACGTAGTATATAAACATGCAATGATGATATTT

TACTGTCTCAACCCCACTATTGGCCTGGTTAGTGC

CAAAAGATGCAGTTGATCTTAGGTGAAAATTAAG

GCTTGCTTAAACCAACAAGCTCAATGACCTAGGTA

GGTTGAATATCGGCATTTAGT

[Bq23

ACCCATACATTTGGAGGACTTGGACCTACTTGCTT

TCATAATTCTAGTAATTACTAAATATTACTATGAA

TCACTATAAAGAGGTTGTCAAAGACATTGTATTCT

GTCTATTTTCATATATCGTATGGATCAGGAGTTTC

ATTGTTACCATGTGCAATTTATTTATACTGATTGC

TGAATTTTCTGCAGATATGGTCAAGAATAAAGGA

TTCTTGCCGTCAGTTCCTTCAGAAATTGCTGTTC

AGAGGCAACAAATGAAGGAAATAATATTCTCTCT

ACTTGATGCATGCACGGCCAATGATCCTGCTAGTA

ATGTCAAATTTGATGTAGATGCAATAATTGCCAAT

CCTCCTGCATATGGtTAGGTCTTATTACCTCTTTTT

CATTTTTAAGCGGGATGTTTTTGTCTAATGACAAT

TGATCATTTTGAGTGGAAGGGGTCTTTCTGTTATC

TCTTTCACCATCCTGCATAGTCTGCAATATTTAAC

CTAAAGAAACATTAGATGTCCATTTTGTTGTTCTA

CATACTCAATGTTCTCTATATAAATCATTTTGGTA

TTCTAATGCTTGAAATTTGTGGACTTCTGCCCCTC

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATG

TGTCTAATGgAAAAATACTTGTTCAGGACATACGC

ATGTTGCAGAGGCACTAAAAGT

Conservation Genet Resour

123

Page 7: Isolation and characterization of microsatellite markers for the neotropical tree, Pachira quinata (Malvaceae)

[Bq24

ACGGGTTCCTCTTCCCAAATCTATCATCCCGGGCT

CTCGTAGGTTTCCCTGAGAACTTCTCTGCTCTGAG

AGCCACCTGTTATTCTATAACATCCATTCCTATCA

TAACTTAAGCCTTTCTTGATGGTTTTCGATCATAA

GGGAAAAATAAAAGAGGAAAAATGATTTCTAAAG

TGTTTAGACTATTATTAACCTAAGCTAAGTCCATT

TCACGGCTGCCATGTCAAAACCCAAAACCTTAATC

ATGAAGATGGAAAATGGCATGACATGAGAAGAAA

AGTGAGAAGTGAGGTTTCACCTTGAAATGGAGAA

GAGTATGGCGACACAAAGCTTGTTTCACCCTTGAA

AGTTCAAATCGAAAACCTTAGACAAAAGTTACCA

TGGAATCGAAACATGAGGATAGGAAGATCAAGAA

TGGCGTAACATGGTGAAATAGATGAGAGAAGCGT

TACCTTGAGATGGTGAAGCAAGTGGCGGTAAAGA

TGACTTAAAGCTTGAGAATGAACATCAATGGTGG

TTATGGAAGAAGGAGAAGGAAAATGGAAGAAGA

AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA

AAGAAGATAGAGGAAAGTGTTGGAAAAGTAAAA

GTAAGTTTAAGTGATGTGAAGGAAGTGTGTAAGA

GAAGATTGTCTTGCATAAGGTGGTGTGCAAAGTG

GGATGGGAGAGTATGTGAGTGGGAGACATGAAGT

GATGGGTGTAAGGGTGAATGGATGTGTGTAAGAG

CACAAGTCACATCATGTCTCCTTATTAAAATTTAT

GCTTGGAGTCAAAATCGAAATACGAATAAATCAT

CGTATTTGGCTCAGATTAAACTCCTGAAAGTAAAT

TTAATATTTTTGGGAATATTTGAAAAGATCGGGTT

TGAAAAATCTTACCTGGATAATTAATTTGATTAAT

TTATTCTCAAATAACGTTAACAAGGCTTTAAAGAG

AATAAAATCGATTTAAGAACGAAAATTCATGAAT

CTTTACCCGAAAGTGTTACTATTCACAAAAAATGA

TGTCAAAACCATCAAGTTCGGTTTTCGAGACTGTT

TTTATAGTTTGGTATGTAAATCGAAGT

[Bq25

AATTCCCATATAACCTCTTGAAGTTGAAGCTGAAT

TCTTCCTTATCCAAACAAAGGGAAATCATGGTGTA

TTTGTTTCCTAGTTATTGGATTTCTTTCCTGGTCAC

AGTCTGTGTCTAAAGATAGTGGGCAGGTCAAGG

GGTTTGGAGAGGGGTCTCGCTTGCGGCTATGGCT

GACGCTATCTTCTTCTTCTTCTTATTATTATTATTA

TTATTACATTTTGTTAATTAGGTTATTGAAAAAAC

CGGTAGGTGGTCCTTATCAGGTTGATCAAAAAGA

AAGAGGATGCGAGCTATTTTATCAGATCGCTGTC

ATTGGGCTCCATATGTGTTTTTTCTCAAACGTCTTA

AATTTGCCACAAGCCAAATGGGCGACAACAACTT

ATCAGGGTTTGT

[Bq26

GCCAGATATCNATACACATTTGTGAAATTTTTATA

CAATATAATTTAGCCATAAATGAATAAAGGCTGA

GAATTTCAACAACTGTGAAAATGGCAAAGTTGAC

ATGAAAATAAAAGAAGCCATCTCCAATTATAATT

TACTATTTTCTCCCATATTTCCACCAAATAATTCT

CTTAACAGACAACTCCTTTTTTTTCTTCCTCCTAGA

TGATTGAAGCTTACCTTTGATCGTCATATGCAAAT

TTGATGAAGAAAATAAAAGGGTAATTAGTAAGAA

ACTTGAAAAAAATTCGACATCGAAAACTTTACAT

GGTGATGAGATGATTGAATAATAATCTTCATCAG

GCACTCCTACATCTCCTCTTGAAACTGCGAGCTGA

TGACTCAACTGTAAATGGTTCAGCAGAGTTGGATC

GGAAAAACGACTCTACCTCTTCACTTCTTGTAGTT

TCGAAGAACTGCAACTCCGATAACTTCCTCTTGTG

CACGAAGCTTACTCTCACTTCCTTCTTGGGTGTCG

GTGGGCAGCTTTGGATGATGGGTATTTTGTGATCA

CTCGAAGTTGGCGTTCTGCAACCTTCTTTTTCTTCT

TCTTCGTCTTCTTCTTCTTTTTCAACACCTTCCCTC

GATGTCACACCTCCTTCTTGTTTTACCCCATCTTTT

TCAATCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT

CTTCTTCTTCTTCGTTTTGTTGTTCAAGTTTTTGTA

GACTTCCTTGAAGAATAACTTTGCCAATAGAATAG

ACACTAAACAGTGAGAAAAGTTGGAAACTAGTCA

AGGCATTGTAGCAGTTCTAAAATAAGATTGAGAG

AAAGATGTCCAATGTATTCTTGCACATCAAAGAA

GGCATCACTGGAATAAAACTCACTAGCCCAAGC

TCAAGGACACAAGTAACATGAAGCAACTTGGCCT

ATTAAAAGAAACCTAATACTTGGAGAATTCTAAA

GGGCCCAATTTGCTTGAAGTTTGTAAAAGCTTGGA

GATCCAATCTAATATAACTACTCCAATGT

[Bq27

ACAGATTCAGTTCAGTGAGATTCTCTCCACATCAC

AACTCCCTAATACAATTCAAGAAAACATGAAAAA

ACGAAAATTTAATCATACCAACTTTAAATTATAGC

AAGGCCAAGAGGATATCCAAAGACATCAATACAA

ACAAAGGGAATGTGTGTGTGTGTGTGTGTGTGTGT

GTGTGTGTGTATTTAAGCTGGTTGACGATAGAGCA

ATATTCCTGCGAAACCTCCACTAATCCCCTATGTT

ATGTTGATTAACTTCATAGATCATAAGAGGAAAA

[Bq29

ACCTTTGGCATAAAAGCATTCTGACTATTGCAATG

TGAAAATATCTCGGTAATCTTAAAGGACTTCTAAA

AAAGTGAACCTATCCTAAATATGTGTTTCTTCTTG

ATGCAAATGGGAGCCCCTTCTTTGTTTGTCTCACC

Conservation Genet Resour

123

Page 8: Isolation and characterization of microsatellite markers for the neotropical tree, Pachira quinata (Malvaceae)

AGTTTGATGAATTTTATGTGTTTGCTGTATTTTTA

TTTTTATGCTATTCATTTCCACAAGCCCTTTTTTT

TTGTTTGTCTCACCAGTAACCAGTTTGATGAATTT

TATGAGTTTGCTCTCTTTTTACTCGTGCATTATGC

TATTCTTTTCCATGAGTAAAATATGCAATTCTTTA

TGGTTTTGTCCTGACTGTAAGTATGACAAGAATAT

TAGATTGATAAATAAAGTTTGTTTCTGGAGCAAAA

GACTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCT

CTCTCTTTTGTGACTGTCGTCCTGTCCTGCAATGCT

TAATGCTTGCTTGATGTTAAAATGCATGTGTCTTT

TGATCTTGGTCATTTGTTTACACAACATAGGCTTG

GTTAAGTATGTTTTATTTTCAACTGAGTGTATAAA

GTTTTGATTGATGAAAATATTGGTTTTATTCATTC

AATTGACTTGTTTGATAACACTTTTGAATGGTTGC

AGGACTATCACTCAAATCCCAAGAACTAACAGCT

ATTTTTTTAGCT

[Bq30

ACACTCGTCCAGCAGCGATGACTTTGCTGCATTGC

TTGATGCTGAGCTCGAAGCCGGTTCTTCAGGCTCA

TCACCTGATGAACGAGACAATGAAGAGGAAGAAG

TTAATGCTGATGATGATGATGATGATGATGATGAT

GATGATGAAGATGAGGAGGATGATGTCCTTAACA

CTCAAAGGTGCATCTTCTAGGAATATTAAACTTTT

AATTTTGTTAGAGTTACTATCAAAGAAAAAAAAA

AATGAAGGGATGAACTTTTTTTAGTTTGCAAATGA

TTACAGGTGTGCACATTATTAACTTTGTGTTTTAA

TGGTCGTTGTGGACAGTTTTATTGTTTTATTTTTTT

ATGTTGTTCTAACAGTGTTTGTATATTTTCATCGTG

TTACATGAAACTATGCTAATTTTAAGATCCATGAC

TTTTTCGAAGAATACGAACAGCATATGCTTTTCCT

TGGTTGATTTCTTATTAATTTATGTTTTGGGTTTTG

AATTGGATGGATATGAGTTAATACATTGATAAATT

CGAGGAGATATTTAAAAATTTTTGGATTTTGTTCT

GCTTGATTTCAGAGTTGAGACCTACTGTAGTGATG

AATTTTTGTGGATATTTGGTTATGTTCTTGACAGA

ATTGAGGATTGATTATCCTTGGCATCTTATTTAAT

CATTTGACATTTGAATTGAACTTGCTGCTTTTATTT

CTTTTTAAACAAAAGGTTCTATAAATTTAACTTTT

AGGAGCAAAAGGTGCAAGACCGAGAAGTTGCAA

GACTTAGAAGAACCGCAAGGGTCAGCCTCTCAGA

GTTTGATAGAAGAAAAGTCAGGTAAAGTTCCTTA

ATATGGTTGTTTGCCCTTTTAGTTTATTTGAAACTT

GGATCTCTTTCACCCCCAAACTTCAGCACAATTAA

CTACCTGGAGACATGCTTAGAAATATCTCAACCTA

CAGATGACTTTTAGGAGATATAACAAGAGAGCAA

TTTGGCTGGAACTTATCTATTCTTAAACTTTAATC

TATTGCTGTTGATAAATGCTCAAAGAGGATGTGTC

TGTTTTAGATGGATGTGTGATNGCTGAANC

[Bq31

ACATAGATACATACCTCAGGTAGTTTCTGTTTGAA

AGCAACATCCAAGCGTGCATCTAAAGTATTCTCCA

AAACAATCTTCCCATCTTCTGAAGCCAGCACAACT

CCGCCCGAGCTAATTCATTTATTTTTCAGCATGTA

TGTATATGCATAAATTAATAAACCAAGCATTGCA

ATTAAACAAAATTAAAAGAAGGGTTAATTTTCGT

GTTACTTTTTTAATTTTTAATTATTAATTATATGGT

AAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG

ATTACGCACCAGTAAGGTTGATGGGAATTATTAT

TATCTGGGTCAGTGGGAGGGGGTGGGAGGTAAAC

ATTGTCGATGGTAATCTTAGGTGGTGCTACATTG

AATCTCTCAGCGTAGACTCGTTTTGCATCTTCTA

AAACAGACTCAACCACCTTACGATCAACCTCTCT

GCACCTCAGTAACACTGCTGCCTCCCTCAGCCGA

ACCAGACTCTGCACCACCAATGCTTTGACCAGGT

TTTTGTATCCCCTCTTATCGTTACTCAGACGCAGC

AGCTCCTTCCTCGCACTTTCTTTTATGGAGTTCAC

CAGATCATCCTGTGCTTGCAGCACTTTTATCCTCG

ACGCGTTCAGCTGCATTGAGT

References

Alverson WS (1994) New species and combinations of Catostema

and Pachira (Bombacaceae) from Venezuelan Guayana. Novon

4:3–8

Glenn TC, Schable NA (2005) Isolating microsatellite DNA loci.

Molecular evolution: producing the biochemical data, part B.

Elsevier Academic Press, San Diego, pp 202–222

McPherson H, Porter C, Rymer PD, Crayn DM, Rossetto M (2008)

Isolation and characterization of polymorphic microsatellite loci from

Tetratheca ericifolia (Elaeocarpaceae). Mol Ecol Resour 8:867–869

Rossetto M, Crayn D, Ford A, Ridgeway P, Rymer P (2007) The

comparative study of range-wide genetic structure across related,

co-distributed rainforest trees reveals contrasting evolutionary

histories. Aust J Bot 55:416–424

Sandiford M (1998) A study of the reproductive biology of

Bombacopsis quinata (Jacq.) Dugand

Conservation Genet Resour

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