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INTERNATIONAL BURCH UNIVERSITY
FACULTY OF ENGINEERING AND NATURAL SCIENCES
DEPARTMENT OF GENETICS AND BIOENGINEERING
FIRST CYCLE STUDY PROGRAM SPECIFICATION
SARAJEVO
August, 2019
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TABLE OF CONTENTS
1. 2
1.1. 2
1.2. 3
1.3. 3
1.4. 3
1.5. 3
1.6. 4
1.7. 4
1.8. 5
1.9. 5
1.9.1. ASSESSMENT 4
1.9.2. GRADING 4
1.10. 6
1.11. 6
1.12. 6
1.13. 7
1.14. 7
2. 8
1. PROGRAM DESCRIPTION
1.1. General
Genetics and bioengineering is one of the fastest growing disciplines in science today. The unique
combination of traditional methods and approaches used in genetics combined with the innovative
approaches of bioengineering enable a multidisciplinary approach to solving various biomedical,
forensic, microbiological, engineering, and other related problems. The undergraduate program
lasts three years and enables students to gain a wide overview of the field through the study of
various fundamental courses like chemistry, physics and biology; bioengineering courses: genetics
and bioengineering, biotechnology, molecular biology, etc.; as well as engineering subjects:
programming, calculus etc., which give students the engineering basis necessary for the filed.
The Genetics and Bioengineering Department at International Burch University is located on the
first floor in a separate part of the University facility. In order to avoid possible contamination the
entire department is separated from the rest of the building with a glass door, which can only be
accessed with an ID card. The Department has 4 laboratories: Scientific Research, Cell Biology
and Microbiology, Genetics and Molecular Biology and Chemistry lab in which students pursue
their laboratory exercises.
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The main aim of the genetics and bioengineering undergraduate program at IBU is to prepare
students for their future career through giving them the adequate knowledge, skills, and attitudes
necessary to succeed. Each course is based on the principle that the knowledge gained on the
lectures is followed by the practical application of that knowledge in the laboratory.
This field of study offers a wide range of employment opportunities in Bosnia and Herzegovina as
well as the entire world. The main product of Higher Education Institution International Burch
University, is a skilled and competent graduate ready for the labor market.
1.2. Vision
With the establishment of the Department of Genetics and Bioengineering our goal was to create
a branch that is dynamic, interdisciplinary, ethic, enterprising, open to original concepts,
environmentalist, active in social points, high quality in science, and modern. The aim was to
create a nurturing environment that will enable our students to gain the highest level of knowledge
while creating relationships with faculty and colleagues that would prepare them for careers within
the areas of interest. Program components combine flexibility with rigor, place a priority on
independence and imagination, and emphasize extensive individual faculty-student interactions.
1.3. Mission
The mission of the Department of Genetics and Bioengineering is to train the students to be the
next generation of leaders in the globally competitive fields of life sciences, biotechnology,
industry, academia, and research. The program is developed to meet the increasing demand of
these fields in industry and research, respectively. Our aim is to enable students to become
scientific professionals in fields such as biotechnology, bioinformatics, biomedical engineering,
pharmacy and drug design, nanotechnology, genomic and proteomic research, neuroscience, and
many more.
1.4. Program
The Department of Genetics and Bioengineering offers three degrees: BSc undergraduate (three
years), MSc (either one or two year program), and PhD (three years). Foundational course work
in basic natural sciences, particularly in biology, chemistry, physics, and mathematics, introduces
the students to the fundamentals needed for their future studies of genetics and bioengineering.
Since the entire program is in English during the first year of the bachelor degree students listen
to the course which gives them advanced English reading and writing exercises (in both semesters).
This course enables students to advance their knowledge of the English language which is
necessary throughout the entire program. During the second and third year of the bachelor program
candidates immerse themselves deeper into focused areas by predominantly attending genetic and
bioengineering courses. The curriculum also entails elective courses that are designed to provide
students with opportunities to begin establishing professional skills that are in line with their
interests. Candidates that are enrolled in MSc and PhD programs attend more advanced courses in
agricultural, medical, environmental, and practical biotechnologies while also conducting high
quality research. They are expected to write and defend a thesis/dissertation at the completion of
their studies.
1.5. Program Objectives and Outcomes
The objectives of BSc program are as follows:
● To produce graduates skilled in the fundamental theoretical and practical concepts of future
graduate pursuits should they choose to do so.
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● To prepare graduates to pursue career choices in various genetics and bioengineering or
related interdisciplinary fields that require a strong background in applied sciences or
engineering.
● To equip graduates with problem solving skills, laboratory skills, and design skills
necessary to thrive in technical careers.
● To develop students' abilities to communicate and demonstrate teamwork skills as well as
an ethical demeanor necessary to succeed in their careers.
● To prepare students to continue their professional development through continuing their
educational endeavors and personal development experiences based on their awareness of
database resources and professional societies, journals, and meetings.
Upon completion of this BSc Genetics and Bioengineering program, students should be able to:
● Show a fundamental level of knowledge in the field of genetics and bioengineering as well
as demonstrate knowledge in the fields of basic sciences and electives necessary for the
bioengineering profession.
● Interpret and discuss various different topics related to the field.
● Apply computer programs and programming languages necessary to adequately perform
tasks in the bioengineering field in a scientific manner through the development of
computer literacy.
● Develop a scientific approach to solving various scientific problems and tasks through the
work on various laboratory experiments in the department as well as apply a fundamental
level of skills needed to perform routine laboratory work.
● Master the use of various bioengineering laboratory instruments and machines.
● Collect, analyze and write the results of laboratory experiments and write laboratory
reports.
● Develop habits to work according to laboratory safety procedures and learn various bio-
safety levels.
● Develop team work skills, as well as skills to work in a multidisciplinary environment and
bioethical and public policy awareness.
● Learn to critically analyze laboratory protocols and compare various methodologies.
1.6. Practical Training
Through the entire Bachelor program students have practical or laboratory sessions which follow
the lectures. This enables students to get practical training in various scientific and engineering
fields as well as develop skills necessary for their future career. As mentioned before, Burch
possesses four well-equipped laboratories to meet all of the needs of the program. Students also
gain additional training through visiting various laboratories throughout the course. Besides the
regular laboratory sessions students also have to have an internship practice. This adds significant
workplace experience to a student’s education. It is realized in the collaboration with public and
private institutions based both nationally as well as internationally. With the duration of 30
working days, it enables the student to gain valuable “on the job,” “real-world” work experience
related to a chosen focus in genetics and bioengineering. This practical training also permits
students to establish networks in the areas of work in potential future careers.
1.7. Learning and Teaching
Our learning and teaching methods provide high quality learning opportunities so that
undergraduate and graduate candidates effectively demonstrate achievement in the courses and
modules in their route of study.
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We aim to foster the development of independent study skills, intellectual autonomy as well as a
sense of curiosity while encouraging a commitment to lifelong learning and continuous
professional development. Furthermore, students are urged to be independent in their course of
study by taking on responsibility for their own learning and development. A progressive use of
project learning, integrated assessment, and product/problem-based learning allow students to take
on greater self-direction. Group as well as team work are of particular focus during the scholars’
course of study as they provide personal and enriching interactions that shape students both
socially and intellectually.
Our courses are usually composed of lectures, seminars, tutorials, and practical laboratory
sessions. The use of simulations, role play, case studies, projects, practical work, work-based
learning, workshops, peer tutoring, peer group interaction, self-managed teams, and learner-
managed learning are some of the means by which effective learning is encouraged.
1.8. Teaching/Learning Methods and Strategies
Lectures/classes: Lectures and classes offer information, literature reviews, illustrative
applications and presentations that explore core ideas in the subject matter. Students are expected
to solve problems that are discussed in small class set ups. Attending less than 70% of lectures will
result in failing the course.
Practical sessions: Practical sessions enable students to develop a sense for real life scientific
issues through regular laboratory participation. Each course is accompanied by a minimum of 10
laboratory sessions and attendance is mandatory for all students. Student performance is monitored
and graded through laboratory quizzes and practical exams.
Group project: The group project provides an opportunity for students to solve real genetic,
bioengineering, and biotechnological problems, practice analytic and problem-solving skills, and
work in teams. It is this focus on knowing and doing, on individual achievement as well as
meaningful collaborations that enable our students to reach their intellectual and academic
potential.
Individual project: Individual projects involve literature reviews, problem specification and
experiments/analyses. This enables a student to utilize theoretical techniques they have learned
by applying them in laboratory and library settings.
Expert (guest) lectures and seminars: Guest lectures and seminars provide students with
opportunities to hear internal as well as external visiting speakers. Through this immersion in real-
world science, students are able to broaden their idea and understanding of the field and to
potentially begin visualizing themselves in a science profession.
1.9. Assessment Protocols
The purpose of an outcome-based learning assessment is to improve the quality of learning and
teaching in genetics and bioengineering.
The fundamental principles are:
● A student’s learning is the central focus of the Department‘s efforts.
● Each student is unique and will express and experience learning in a unique way.
● Students must be able to apply their learning beyond the classroom.
● Students should become effective, independent, lifelong learners as a result of their
educational experience.
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1.10. Assessment
Assessment of intellectual skills is done via:
● Written examinations
● Written essay assignments
● Evaluation of practical work
● Group project report and team presentation
● Individual project report and short presentation.
1.11. Grading
The final success of a student after all envisioned forms of testing is evaluated and graded through
the system of comparison ECTS with the scale of grading, as follows:
a) 10 (A) – outstanding performance without errors or with minor errors, carries 95-100
points
b) 9 (B) – above average, with few errors, carries 85-94 points
c) 8 (C) – average, with notable errors, carries 75-84 points
d) 7 (D) – generally good, but with significant shortcomings, carries 65-74 points
e) 6 (E) – meets minimum criteria, carries 55-64 points
f) 5 (F, FX) – performance does not meet minimum criteria, less than 55 points.
1.12. Transferable Skills
By the end of the course, a student will have developed a range of transferable skills including
abilities in:
● Managing their own learning and conducting independent thinking and study
● Problem specification and modeling
● Applying genetic and bioengineering methods to solve real-world problems
● Managing a research project, including planning and time management
● Conducting an engineering-based research-based work, from hypothesis to report writing
● Working in a multi-disciplinary team
● Critical analysis.
1.13. Skills and Other Attributes
● Effective communication of information, arguments, analyses and techniques in a variety
of forms to specialist and non-specialist audiences.
● An ability to undertake further training, develop existing skills, and acquire new
competences that will enable students to assume significant responsibility within
organizations.
1.14. Methods for Evaluating and Improving the Quality and Standards of
Teaching and Learning
● Student focus groups and the annual student survey
● Classroom observation of lecturers
● Instructors possess advanced professional diplomas in teaching and learning in higher
education
● Membership of the higher education academy
● External examiners reports
● Accreditation visits
● Curriculum area review
● Course committees
● Annual and periodic review.
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Indicators of quality and standards:
● Student feedback
● Retention and success rates for each level for each course
● Student module evaluations
● Annual student questionnaires
● First destination statistics
● Professional accreditation
● External examiner reports.
1.15. Criteria for Admission
The Genetics and Bioengineering department at IBU invites applications from candidates whose
breadth of knowledge and curiosity suggest a potential for academic excellence.
In general, only applicants with a distinguished academic record will be considered.
Recommendations as well as a personal statement are carefully weighed as evidence for qualities
we seek in our applicants. Those include evidence of personal skills, communication skills,
literacy, numeracy, study skills, subject and motivation, and work experience as well as
community involvement.
Students whose first language is not English are urged to apply, also. However, mastery of the
English language is tested via standardized means such as IELTS as well as TOEFL.
1.16. Career Prospects
Following completion of a degree, successful graduates, or Bachelors of Genetics and
Bioengineering, work as researchers or administrators in various industries (genetic diagnosis and
medication, chemical, pharmaceutical, food, etc.), spanning across a wide range of disciplines
within biological sciences and biotechnology.
1BOS 101 Bosnian/Croatian/Serbian Language I/ TDE 101 Turkish Language I/ GRM 101 German Language I
2BOS 102 Bosnian/Croatian/Serbian Language II/ TDE 102 Turkish Language II/ GRM 102 German Language II
2. CURRICULUM
First Semester
CODE COURSE NAME T P ECTS
GBE 101 Introduction to Genetics and Bioengineering 2 2 5
GBE 103 General Biology 3 2 6
MTH 107 Survey of Calculus 3 2 6
CEN 111 Programming I 3 2 6
ELT 117 Advanced Reading and Vocabulary I 2 2 5
XXX xxx University Level Elective (Language)1 0 2 2
Total 13 12 30
Second Semester
CODE COURSE NAME T P ECTS
GBE 102 Cell Biology 2 2 5
GBE 108 General Chemistry 3 2 6
GBE 106 Evolution and Systematics 3 2 6
PHY 104 General Physics 3 2 6
GBE 105 Histology and Embryology 2 2 5
XXX xxx University Level Elective (Language)2 0 2 2
Total 13 12 30
Third Semester
CODE COURSE NAME T P ECTS
GBE 201 Genetics 2 2 5
GBE 211 Organic Chemistry 3 2 6
GBE 217 Microbiology 2 2 4
GBE 219 Molecular Biology I 2 2 5
GBE 323 Biomedical Instrumentation 2 2 5
GBE xxx Department Level Elective I 2 2 5
Total 13 12 30
Fourth Semester
CODE COURSE NAME T P ECTS
GBE 202 Biostatistics 2 2 4
GBE 206 Molecular Biology II 2 2 5
GBE 210 Biochemistry 3 2 6
GBE 330 Biosensors 2 2 5
GBE xxx Department Level Elective II 2 2 5
GBE xxx Department Level Elective III 2 2 5
Total 13 12 30
Fifth Semester
CODE COURSE NAME T P ECTS
GBE 303 Internship 0 4 5
GBE 307 Bioinformatics 2 2 5
GBE 309 Human Genetics 2 2 5
GBE 325 Biomedical Signals and Systems 2 2 5
GBE xxx Department Level Elective IV 2 2 5
GBE xxx Department Level Elective V 2 2 5
Total
10 14 30
Sixth Semester
CODE COURSE NAME T P ECTS
GBE 392 Genetics and Bioengineering Project 0 4 5
GBE 304 Forensic Genetics 2 2 5
GBE 321 Intelligent Systems 2 2 5
GBE 338 Immunology and Immunogenetics 2 2 5
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GBE xxx Department Level Elective VI 2 2 5
GBE xxx Department Level Elective VII 2 2 5
Total 10 14 30
Department Level Elective Courses
CODE COURSE NAME T P ECTS
GBE 320 Systems Physiology 2 2 5
GBE 322 Principles of Neurobiology 2 2 5
GBE 324 Biomaterials 2 2 5
GBE 326 Cytogenetics 2 2 5
GBE 327 General Biotechnology and Biosafety 2 2 5
GBE 328 Introduction to Research Methods 2 2 5
GBE 329 Population Genetics 2 2 5
GBE 331 Environmental Biology 2 2 5
GBE 332 Plant Stress Physiology 2 2 5
GBE 333 Plant Physiology and Tissue Culture 2 2 5
GBE 334 Analytical Chemistry 2 2 5
GBE 335 Genomics and Proteomics 2 2 5
GBE 337 Biomechanics 2 2 5
GBE 339 Recombinant DNA Technology 2 2 5
GBE 340 Plant Pathology 2 2 5
GBE 341 Biophysics 2 2 5
GBE 343 Virology 2 2 5
University Level Elective Courses
COURSE
NAME COURSE NAME T P ECTS
BOS 101 Bosnian/Croatian/Serbian Language I 0 2 2
TDE 101 Turkish Language I 0 2 2
GRM 101 German Language I 0 2 2
BOS 102 Bosnian/Croatian/Serbian Language II 0 2 2
TDE 102 Turkish Language II 0 2 2
GRM 102 German Language II 0 2 2
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FIRST SEMESTER
Course Code: GBE 101 Course Name: INTRODUCTION TO GENETICS AND BIOENGINEERING
Level: Undergraduate Year: I Semester: I ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
The course covers basic concepts of genetics and bioengineering and their connection with the
spectrum of human activity. It serves as an introduction to the fundamental science and
engineering on which genetics and bioengineering are based upon. Various topics within the
realms of genetics and bioengineering are covered, and it is designed for students who are in their
first year of genetics and bioengineering studies. Upon completion of the course, students will be
familiar with the general history of the field of biotechnology, including a basic knowledge of the
important researchers within the field and their major contributions and discoveries. They will
also be familiar with the basics of classical genetics and will understand the role of DNA in
inheritance. The course is taken concurrently with a laboratory course.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
●Giving students general knowledge about the field of bioengineering.
●Introduction to the history and applications of DNA/RNA technology, molecular biology
and bioethics.
●Enabling students to analyze situations or phenomena related to the biological world in a bioethical perspective.
●Teaching students to conduct all experiments in a safe environment by introducing them
to the basics of lab safety.
●Illustrating how to apply bioengineering in the laboratory environment.
●Introduction to experiment designing, result recording and result displaying.
Course Content
(weekly plan)
Week 1: An introduction to genetics (definition and history)
Week 2: Genes and genomes
Week 3: Theory of operon
Week 4: Definitions and levels of genetic engineering
Week 5: Recombinant DNA technology and genomics
Week 6: Basics of biotechnology
Week 7: Microbial, plant, and animal biotechnology
Week 8: MID-TERM EXAM WEEK
Week 9: Bioreactors
Week 10: Definition and usage of various genetic markers
Week 11: Introduction to GMO
Week 12: Introduction to gene therapy
Week 13: Introduction to cloning
Week 14: Introduction to various molecular genetic techniques (DNA extraction, PCR, DNA sequencing,
etc.)
Week 15: Introduction to various molecular genetic techniques (DNA extraction, PCR, DNA sequencing,
etc.)
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT:
Week 1-11: The laboratory exercises will be based on the principle of designing an experiment
and following the results through the entire course. Since the main aim of this course is to
introduce students to genetics and bioengineering, through this lab, students will learn how to
pose a hypothesis, how to create an experiment, measure and report the results, and display them
adequately. This exercise will aid student in learning how to write a laboratory report which they
will encounter through the entire program.
Teaching Methods
Description
● Interactive lectures and communication with students ● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
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Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Recall the basics of genetics and bioengineering
2. Describe and discuss the principles of biotechnology: bacteria, animal and plants
3. Explain genome organization
4. Illustrate the use of genetic markers and gene cloning
5. Differentiate and explain methodologies used in bioengineering
6. Propose how to apply bioengineering in different fields
7. Practice laboratory work in a safe environment
8. Organize and manage an experiment and report on the results
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature
Nair, A. J. (2010). Introduction to Biotechnology and Genetic Engineering, 1st ed. Sudbury,
MA, USA: Infinity Science Press
Recommended Literature
Brandenberg O., et al. (2011). Introduction to Molecular Biology and Genetic Engineering.
Roma, Italy: FAO
Current scientific literature and recent research papers
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 18 18
Seminar / Presentation 18 18
Total Workload 129
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 103 Course Name: GENERAL BIOLOGY
Level: Undergraduate Year: I Semester: I ECTS Credits: 6
Status: Mandatory Hours/Week: 3+2 Total Hours: 45+30
Course Description
This course is designed to cover the basics of biology that are needed for future studies of genetics and
bioengineering. Model organisms are usually used to study genetics, which is why students will have an
opportunity to learn about living organisms, as well as how to implement this knowledge in future
studies. The course will begin by introducing the structures of macromolecules, the basic concepts of the
cell, cell organelles, metabolism, cell cycle, inheritance and the flow of genetic information, followed by
binominal classification systems taxonomy as well as basics in ecology. This is taken concurrently with
a laboratory course.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Giving students an overview of the living world and the features of life
● Explaining the basic structure and function of cells as the basic units of all living things and as the building blocks of multicellular organisms.
● Teaching students the basics of metabolism, photosynthesis, cell cycle and the basics of inheritance.
● Introduction to the concept of biodiversity and bioethics.
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● Teaching students to use the binominal classification system which is needed throughout the
study.
● Explaining the interactions between organisms and their environments, and the consequences of these interactions in natural populations, communities, and ecosystems.
Course Content
(weekly plan)
Week 1: Introduction to general biology and molecular diversity of life
Week 2: Chemistry of Life: Water and C based molecules. The structure and function of macromolecules
- carbohydrates, proteins, lipids, nucleic acids
Week 3: The cell, cellular organelles and membrane structure
Week 4: Metabolism and Cellular respiration
Week 5: Photosynthesis: Chloroplast structure and function, photosynthetic pigments, photosystems,
excitation of chlorophyll by light, cyclic and noncyclic electron flows
Week 6: Workshop: Scientific Inquiry and scientific writing
Week 7: Cell Cycle, Mitosis and Meiosis
Week 8: MID-TERM EXAM WEEK
Week 9: Mendel and the gene idea, genotype and phenotype
Week 10: Chromosomal basis of inheritance
Week 11: Molecular basis of inheritance
Week 12: Regulation of Gene expression
Week 13: Workshop: Problem solving tasks: how genetic material can be used for species identification
Week 14: Binominal classification system. Woes and Whittaker classification (visit to the museum of
natural history)
Week 15: Introduction to evolution and introduction to ecology
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2: Lab 1: Making macromolecular models
Week 3: Lab 2: Introduction to Laboratory work, laboratory glassware, safety measures
Week 4: Lab 3: Introduction to Microscopy
Week 5: Lab 4: Distinguishing cell types under the microscope, plant cell
Week 6: Lab 5: Distinguishing cell types under the microscope, animal cell
Week 7: Lab 6: Problem solving tasks: mitosis and meiosis
Week 8:MID-TERM EXAM WEEK
Week 9: Lab 7: Problem solving tasks: Mendelian genetics (autosomal inheritance)
Week 10: Lab 8: Problem solving tasks: Mendelian genetics (sex linked inheritance)
Week 11: Lab 9: Karyotype
Week 12: Lab 10: Problem solving tasks – from DNA to protein
Week 13: Preparation for lab exam
Week 14: Exam from lab course
Week 15: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 30 % Class Deliverables 0 %
Presentation 0 % Final Exam 30 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Discriminate fundaments in the chemistry of life
2. Discriminate the basic concepts of the cell structure
3. Summarize main aspects of anabolism and catabolism
4. Explain the basic concepts of the cell cycle
5. Perform pedigree analysis
6. Use the binominal classification system
7. Summarize main concepts in evolution and ecology
8. Develop basic laboratory techniques appropriate for the field of biology
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Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Campbell A.N., & Reece J. (2013). Biology, 10th ed. Cambridge, UK: Pearson Publishing
Recommended Literature Starr, C., Taggart, R., Evers, C., & Starr, L. (2008). Biology: The Unity and Diversity of Life, 12th ed.
Andover, Hampshire, UK: Cengage Learning
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 3 45
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 15 15
Preparation for Final Examination 1 20 20
Assignment / Homework / Project 20 20
Seminar / Presentation 20 20
Total Workload 154
ECTS Credit (Total Workload / 25) 6
Course Code: MTH 107 Course Name: SURVEY OF CALCULUS
Level: Undergraduate Year: I Semester: I ECTS Credits: 6
Status: Mandatory Hours/Week: 3+2 Total Hours: 45+30
Course Description
Use of calculus is widespread in science, engineering, medicine, business, industry, and
many other fields. Calculus also provides important tools in understanding functions and has
led to the development of new areas of mathematics including real and complex analysis,
topology, and non-Euclidean geometry.
Course Objectives
1-To expand understanding of mathematical topics that may have been previously studied.
2-To introduce and explore topics that possibly have not been part of the student’s
mathematical experience.
3-To develop an appreciation for the development of mathematical thought.
4-To learn the application of mathematics in real life problems and analyzing the results.
Course Content
(weekly plan)
week 1 Linear Equations and Slope, Linear Models, Functions and Their
Properties
week 2 Function Composition; Graphs and Translations, Polynomial
Functions and Quadratic Models, Rational and Exponential Functions
week 3 Inverses and Logarithmic Functions, Applications of Exponential and
Logarithmic Functions
week 4 Introduction to Limits, Evaluating Limits Algebraically, Limits at
Infinity, One-Sided and Unbounded Functions, Continuity
week 5 Continuity and Applications, Rates of Change, Definition of the
Derivative
week 6 Differentiability, Graphical Differentiation, Basic Rules of
Differentiation, Product and Quotient Rules
week 7 The Chain Rule, Implicit Differentiation, Related Rates
week 8 midterm exam
week 9 Derivatives of Exponential Functions, Derivatives of Logarithmic
Functions, Increasing and Decreasing Functions
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week 10 Relative Extrema, Higher Derivatives and Concavity, Curve Sketching
week 11 Second Derivative Test; Absolute Extrema, Applications of Extrema
week 12 Differentials and Linear Approximation, Antiderivatives
week 13 Method of Substitution, Area and the Definite Integral
week 14 The Fundamental Theorem of Calculus
week 15 Area Between Curves
week 16- FINAL exam
Teaching Methods
Description
1-Lectures
2-Recitation
3-Problem solving
4-Exercises
Assessment Methods Description
(%)
Quiz 25 % Lab/Practical Exam 0 %
Homework 0 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 25 % Class Deliverables 0 %
Presentation 0 % Final Exam 50 %
Total 100 %
Learning Outcomes
On successful completion of the course, the students should be able to:
01-recognise properties of functions and their inverses
02-recall and use properties of polynomials, rational, exponential, logarithmic, trigonometric
and inverse trigonometric functions
03-understand the terms domain and range
04-sketch graphs, using function, its first derivative, and the second derivative
05-use the algebra of limits, and l’Hôpital’s rule to determine limits of simple expressions
06-apply the procedures of differentiation accurately, including implicit and logarithmic
differentiation
07-apply the differentiation procedures to solve related rates and extreme value problems
08-obtain the linear approximations of functions and to approximate the values of functions
09-perform accurately definite and indefinite integration, using parts, substitution, inverse
substitution
10-understand and apply the procedures for integrating rational functions
11-perform accurately improper integrals 12-calculate the volumes of solid objects, the length of arcs and the surface area
13-perform polar to rectangular and rectangular to polar conversions
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Calculus with Applications, Eleventh (or Tenth) Edition by Lial, Greenwell and Ritchey.
Recommended Literature
Thomas's Calculus, Eleventh Edition, George B. Thomas, Pearson International Edition,
2005
Calculus a Complete Course, Sixth Edition, Robert A. Adams, Pearson Addison Wesley,
2006
Calculus with Analytic Geometry, R.A. Silverman, Prentice Hall, 1985
Calculus, R.A. Adams, Addison Wesley Longman, 2003
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 3 45
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 15 15
15
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 20 20
Seminar / Presentation 20 20
Total Workload 149
ECTS Credit (Total Workload / 25) 6
Course code: CEN 111 Course Name: PROGRAMMING I
Level: Undergraduate Year: I Semester: I ECTS Credits: 6
Status: Mandatory Hours/Week: 3+2 Total Hours: 45+30
Course Description
The course provides basic computer literacy and understanding of algorithms and
programming concepts necessary for the realm of engineering. Topics that will be covered
include algorithms, data types, constants, variables, sequences as well as searching and
sorting abstract data types, structures, pointers and strings. Students will perform
exercises in programming languages such as C, and will be graded both on the correctness
of their solutions and the design choices they make in developing their programs.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
✔ To introduce structured programming concept.
✔ To explain programming constructs such as sequential structures, selection
structures, and repetition structures.
✔ To introduce programming with C languages, variables, if-then-else, loop
structures: for/while/do-while, break/ continue/ switch statements, flow chart
solutions, arrays are covered.
✔ To explain the importance and usefulness of programming in genetics and
bioengineering.
✔ To develop a basic understanding of programming concepts and using these
programming concepts in C language.
Course Content
(weekly plan)
Week 1: Introduction
Week 2: Basic computer literacy.
Week 3: Fundamentals of computer programming.
Week 4: Algorithm development and problem solving using flowcharts and
pseudocodes.
Week 5: Data types.
Week 6: Constants.
Week 7: Variables.
Week 8: MID-TERM EXAM WEEK
Week 9: Basic input/output.
Week 10: Sequences.
Week 11: Selection and repetition structures.
Week 12: Functions and arrays.
Week 13: Searching and sorting, abstract data types, structures, pointers, strings,
input/output and file processing.
Week 14: Searching and sorting, abstract data types, structures, pointers, strings,
input/output and file processing.
Week 15: Preparation for final exam
16
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1-11: Exercising the use of programming language C
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Consultations
● Laboratory work
Assessment Methods Description
(%)
Quiz 15 % Lab/Practical Exam 0 %
Homework 15 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 50 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Fundamental aspects of the theories, principles and practice of computing
2. Knowledge of the underlying concepts and principles associated with computing
and supporting technologies, and the ability to evaluate and interpret these
within the context of various areas of application;
3. The necessity of programming in the field of genetics and bioengineering
4. Application of theory, techniques, and relevant tools to the specification,
analysis, design, implementation, and testing of a simple computing product;
5. Evaluation basic theories, processes, and outcomes of computing
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Kleinberg, J., Tardos, E. (2005). Algorithm Design. Addison-Wesley: Boston, MA,
USA.
Recommended Literature Deitel, P., Deitel, H. (2012). C: How to Program, 7th ed. Prentice Hall: Upper Saddle
River, NJ, USA.
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 3 45
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 15 15
Preparation for Final Examination 1 20 20
Assignment / Homework / Project 20 20
Seminar / Presentation 20 20
Total Workload 154
ECTS Credit (Total Workload / 25) 6
17
Course Code: ELT 117 Course Name: Advanced Reading and Vocabulary I
Level : Undergraduate Year : I Semester : I ECTS Credits : 5
Status : Compulsory Hours/Week : 2+2 Total Hours : 30+30
Course Description This course presents a wide range of authentic reading materials including newspapers, journals,
reviews and academic texts in order to comprehend contrasting viewpoints and to predict and
identify main ideas and to decode hidden clues. It also aims to equip students with intensive and
extensive reading habits. Critical thinking skills such as synthesizing information or analyzing a
problem as well as reacting on the basis of evaluation are fostered. Such sub-skills of reading are
employed by students in their short writings on the topic. Students are expected to improve their
ability to communicate the information and concepts from course reading materials continually
and to improve and expand their vocabulary significantly.
Course Objectives Students will be able to read and comprehend different types of texts. They will have also learned
to acquire new vocabulary on their own and thus to improve their reading and writing skills. In
addition to the integration of reading with writing, research-based instruction will be adopted, so
that students will develop basic research skills including library or internet search.
Course Content
(weekly plan) ● 1st TOPIC Home and the homeless - Home and Travel
● Helping and Hating the Homeless; At home
● 2nd TOPIC: HEALTH Divided Sleep, Long life, Health and medicine
● 3rd TOPIC: History The Robber Barons, The Politics of Progressivism
● Message to Wall Street
● 4th TOPIC: CLOTHING The Necktie; A Young Man and his Kilt
● 5th TOPIC: FILM STUDIES One Hundred Years of Cinema
● Mid-term exam
● A Conversation with Leo Tolstoy on Film; An Interview with James Cameron
● 6th TOPIC: MEDIA STUDY Mind Control and the Internet
● The press and the media; The Use of Social Media in the Arab Spring
● 7th TOPIC: GREAT MINDS The Right-Brain, Left-Brain Controversy
● Artists as Scientists and Entrepreneurs
● 8th TOPIC: THE BRAIN AND MEMORY In Search of Memory
● The Brain and Human Memory Music and the Brain;
● 9TH TOPIC: LEISURE The Art of Paintball
● Final exam Teaching Methods
Description
(list up to 4 methods)
● Reading passages in the classroom.
● Comprehension studies on what is read.
● Vocabulary exercises by topic and short writing assignments on that topic (both in-class and homework assignments).
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 0 %
Homework 10 % Term Paper 0 %
Project 10 % Attendance 0 %
Midterm Exam 30 % Class Deliverables 0 %
Presentation 0 % Final Exam 50 %
Total 100 %
18
Learning Outcomes
(please write 5-8 outcomes)
After completion of this course, students should be able to:
1. Read a variety of texts by using a range of strategies, including decoding and guessing
meaning in unfamiliar texts
2. Analyze extensive reading materials with sufficient comprehension to explain and discuss
critical-thinking elements such as author tone, viewpoint, purpose, presumptions and
underlying beliefs, character motivations, text connections to students’ personal lives, and
logical evaluation of text arguments
3. Recognize sentence and paragraph structures
4. Make logical inferences based on materials read and explain them orally and in writing.
5. Acquire sufficient college-level vocabulary to comprehend the texts and use this
vocabulary in student writing and speaking assignments.
Prerequisite Course(s)
(if any)
Language of Instruction English
Mandatory Literature ● Rober F. Cohen and Judy L. Miller. Longman Academic Reading Series 4: Reading Skills for College (LARS). Pearson Education. 2014. (Chapters 1-5)
● Fellag Linda Robinson. From Reading to Writing Level 3. Pearson Education
(FRTW). 2010. (Units 1-4)
● Michael McCarthy and Felicity O’Dell. English Vocabulary in Use. Cambridge University Press (EVIU). 2001
Recommended Literature ● Mikulecky Beatrice S, and Jeffries Linda. Reading Power Series, Pearson ESL, March 2007.
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 3 3
Preparation for Midterm Examination 1 10 10
Preparation for Final Examination 1 20 20
Assignment / Homework / Project 30 30
Seminar / Presentation
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: BOS 101 Course Name: BOSNIAN/CROATIAN/SERBIAN LANGUAGE I
Level: Undergraduate Year: I Semester: I ECTS Credits: 2
Status: Elective Hours/Week: 0+2 Total Hours: 0+30
Course Description The purpose of this course is to teach Bosnian language basics at the beginner level.
Course Objectives
Highly personalized course designed to improve knowledge of Bosnian language and
communication and language skills. The objective is to achieve the level of language that
would create confidence to communicate in Bosnian with clients, suppliers and colleagues.
Course Content
(weekly plan)
● Learn how to say „Hello“ and acquaint; the classes of nouns (muški, ženski, srednji rod)
● Personal pronouns (in the first case), introducing oneself: I'm from ...; practicing
personal pronouns by answering the questions Where are you from? Where is
he/she from? Where are they from? Introducing verb to be by questions: Are you
from...? Is he from...?
● Present tense of verb to be (positive, negative and question form); Answering the question „What's your job?“; learning some of names of different jobs and male
and female form for that kind of nouns
● Terminology about the faculty, exercise with cross-words; numbers 1-10 with little
short song about the numbers; first information about plural
● Numbers 11-10.000; speaking exercise about numbers by phone number, prices; demonstrative pronouns
● Introducing the collocations about the speaker's attitude about the contents of
sentence and speaking on the scale from extremely kind to extremely unkind;
declarative, interrogative and exclamatory sentences
19
● Place and sort of accent in Bosnian words; filling out the forms with basic
information (name, surname, date and place of birth...)
● Introducing the question-word (what, where, when...); ordinal numbers and classes of adjectives (muški, ženski, srednji rod)
● Answering on questions What date is...? When it happened? and exercise for
ordinal numbers
● SVO order in Bosnian language, order in declarative and interrogative sentences
Teaching Methods
Description
● Interactive lectures and communications with students
● Discussions and group works
● Presentations
Assessment Methods Description
(%)
Quiz 0 % Lab/Practical Exam 0 %
Homework 0 % Term Paper 0 %
Project 0 % Attendance 30 %
Midterm Exam 30 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Speak Bosnian with confidence
2. Interact more confidently when visiting a Bosnian-speaking region or dealing with
Bosnian speakers
3. Build rapport and strengthen relationships with Bosnian-speaking colleagues and
clients through a show of interest in the Bosnian language and culture
4. Demonstrate goodwill and facilitate international communication at both a personal
and organizational level.
Prerequisite Course(s)
(if any)
None
Language of Instruction Bosnian and English
Mandatory Literature Zenaida Karavdić, Bosnian language as a foreign language, IBU, Sarajevo 2010.
Bosanski jezik, Priručnik za strance, Minela Kerla, Nermina Alihodžić-Usejnovski,2013.
Recommended Literature Ronelle Alexander, Ellen Elias-Bursac Bosnian, Croatian, Serbian, a Textbook: With
Exercises and Basic Grammar, University of Wisconsin Press, 2006
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 14 2 28
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 0 0 0
Midterm Examination (1 week) 1 1 1
Final Examination (1 week) 1 1 1
Preparation for Midterm Examination 1 1 1
Preparation for Final Examination 1 1 8
1 14 1 14
Seminar / Presentation 1 4 4
Total Workload 50
ECTS Credit (Total Workload / 25) 2
Course Code: TDE 101 Course Name: TURKISH LANGUAGE I
Level: Undergraduate Year: I Semester: I ECTS Credits: 2
Status: Elective Hours/Week: 0+2 Total Hours: 0+30
20
Course Description
This course is offered to all students entering their first year of genetics and bioengineering
studies. It is taught in Turkish, and it covers basic grammatical rules and focuses on practicing
everyday use of the language. This is the first part of a two-part series that is taught during the
first year. The second part will be taught in the following semester.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
✔ To learn Vocabulary and Grammar.
✔ To use Turkish in everyday life.
✔ To speak, understand, read and write basic Turkish
Teaching Methods
Description
● Interactive lectures and communication with students.
● Discussions and group work.
Assessment Methods Description (%)
Quiz 10 % Lab/Practical Exam 0 %
Homework 10 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Basic vocabulary and grammar
2. Communication in Turkish
3. Reading articles in Turkish
4. Writing articles in Turkish
5. Use of Turkish in everyday life situations
Prerequisite Course(s)
(if any)
None
Language of Instruction Turkish
Mandatory Literature Lewis, G. (2001). Turkish Grammar. Oxford University Press: Oxford, UK.
Recommended Literature Dogan, B. O., Wilman, A. (2007). Starting Turkish. Milet Publishing: London, UK.
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 0 0 0
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 2 2
Preparation for Final Examination 1 8 8
Assignment / Homework / Project 3 3
Seminar / Presentation 3 3
Total Workload 50
ECTS Credit (Total Workload / 25) 2
21
Course Code: GRM 101 Course Name: GERMAN LANGUAGE I
Level: Undergraduate Year: 1 Semester: I ECTS Credits: 2
Status: Elective Hours/Week: 0+2 Total Hours: 0+30
Course Description
Basic communication; structures and vocabulary necessary to comprehend simple daily
conversational dialogues and reading texts, and to engage in daily simple communication; information
about the culture of the target language.
Course Objectives
These courses emphasize the use of the target language for active communication. They have the
following objectives:
● the comprehension of formal and informal spoken language;
● the acquisition of vocabulary and a grasp of language structure to allow for the accurate
reading of newspaper and magazine articles as well as modern literature;
● the ability to compose expository passages;
22
● the ability to express ideas orally with accuracy and fluency. Students will also learn valuable
test-taking strategies and self-evaluative skills.
Course Content
(weekly plan)
All Foreign courses improve grammar, speaking, listening and reading and writing skills. The highly-
trained and experienced staff use a wide range of learning materials and methods, including audio-
visual and ICT. All learners have an initial assessment and interview with a member of staff to
establish their level of that particular foreign language. To ensure maximum progress, this is followed
by an on-course diagnostic assessment to determine more precisely the specific language skills needed
by each learner. The class tutor and learner then agree an individual learning plan to record the
learner’s progress.
Teaching Methods
Description
(list up to 4 methods)
● Interactive lectures and communication with students
● Discussions and group work
● Presentations (at least 1 per student per semester)
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 0 %
Homework 0 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 40 % Class Deliverables 0 %
Presentation 10 % Final Exam 50 %
Total 100 %
Learning Outcomes
(please write 5-8 outcomes)
Upon successful completion of the courses in this discipline, the student will have acquired the
following knowledge and skills:
1. Demonstrate the confidence and listening/speaking skills necessary to participate
successfully in spontaneous aural/oral exchanges with native speakers of those particular
languages.
2. Demonstrate reading comprehension of foreign language texts intended for developmental
(or higher level) foreign language courses.
3. Respond appropriately to written or spoken foreign language by writing paragraphs or short
essays that communicate ideas clearly.
Prerequisite Course(s)
(if any) -
Language of Instruction English
Mandatory Literature
● Schritte plus 2 Audio-CD zumArbeitsbuchmitinteraktivenÜbungen, Monika Bovermann,
Daniela Niebisch, Franz Specht, Sylvette Penning-Hiemstra
● Swick, Edward. The Everything Learning German Book: Speak, Write and Understand
Basic German in No Time, Adams Media; 1st edition, 2003.
Recommended Literature /
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 0 0 0
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 2 2
Preparation for Final Examination 1 8 8
Assignment / Homework / Project 3 3
Seminar / Presentation 3 3
Total Workload 50
23
ECTS Credit (Total Workload / 25) 2
SECOND SEMESTER
Course Code: GBE 102 Course Name: CELL BIOLOGY
Level: Undergraduate Year: I Semester: II ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
The course Cell Biology is designed to give students a general overview of the complexity of the
organism from atom to organisms. Through this course students will comprehend the molecular
basis of life from the chemical composition of the cell and its components to the complexity of
the joining of cells into tissues. The course is focused on the molecular mechanisms witin the cell
and it's ultra structure and function.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Making a detailed study on chemical components of cells.
● Introduction to the basics of energy, catalysis, and biosynthesis.
● Illustrating the structure and function of the plasma membrane and cytoskeleton.
● Explaining the structure and function of mitochondrion and chloroplast.
● Studying proteins and DNA.
● Teaching the cell's interaction with its environment and cytoplasmic membrane systems.
● Illustrating basic microscopy of different cell types.
24
Course Content
(weekly plan)
Week 1: Syllabus presentation
Week 2: Cells: the fundamental units of life
Week 3: The use of energy by cells; The shape and structure of proteins
Week 4: DNA and chromosomes
Week 5: DNA replication, repair and recombination
Week 6: From DNA to protein: How cells read the genome
Week 7: Membrane structure
Week 8: MID-TERM EXAM WEEK
Week 9: Transport across cell membranes
Week 10: Intracellular compartments and protein transport
Week 11: Cytoskeleton
Week 12: Cell division
Week 13: Sexual reproduction and the power of genetics
Week 14: Cell communities
Week 15: Cancer
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: Introduction to the lab course; laboratory rules of conduct
Week 3, Lab 2: Types of living cells (microscopy)
Week 4, Lab 3: Osmosis and diffusion (microscopy)
Week 5, Lab 4: Analysis of plasma membrane stability
Week 6, Lab 5: Isolation of chloroplast
Week 7, Lab 6: Isolation of tyrosinase and enzyme detection
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: Qualitative analysis of biomolecules
Week 10 Lab 8: Human karyotype
Week 11, Lab 9: Barr body (microscopy)
Week 12, Lab 10: Observation of mitosis in onion root tip cells
Week 13, Lab 11: DNA isolation from banana
Week 14: Recap
Week 15: Exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods Description (%)
Quiz 10 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 10 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Show the basic structure of the cell
2. Recognize molecular mechanisms in the cell
3. Interpret cell metabolism
4. Memorize cell cycle, mitosis and meiosis
5. Identify distinction between prokaryotic and eukaryotic cells
6. Illustrate the structure of plant cells in leaf, stem and root
7. Explain the structure of animal cells through the study of human blood cells
8. Describe basic cytogenetics and human karyotype
Prerequisite Course(s)
(if any)
None
Language of Instruction English
25
Mandatory Literature
Alberts, B., Bray, D., Hopkin, K., Johnson, A., Lewis, J., Raff, M., Roberts, K., & Walter, P.
(2014). Essential Cell Biology, 5th ed. New York, NY, USA: Garland Science
Recommended Literature Cooper, G.M., & Hausman, R.E. (2009). The Cell: A Molecular Approach, 5th ed. Stamford, CN:
Sinauer Associates, Inc.
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 12 12
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 18 18
Seminar / Presentation 18 18
Total Workload 127
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 108 Course Name: GENERAL CHEMISTRY
Level: Undergraduate Year: I Semester: II ECTS Credits: 6
Status: Mandatory Hours/Week: 3+2 Total Hours: 45+30
Course Description
The aim of this course is to introduce the students to basic general chemistry principles and to
prepare them for further advanced chemistry, material science, practical, environmental, and
electronics courses so that they will be able to follow concepts related to the chemistry of
elements, atomic structure, electron configuration and periodicity, ionic and covalent bonding,
molecular geometry and chemical bonding theory, chemical stoichiometry, the gaseous state,
liquids and solids, acids and bases. The course will cover descriptive chemistry, elements and
compounds, basic chemical calculations, mole problems, stoichiometry and solution
concentrations, gas laws, thermochemistry, quantum theory and electronic structure of atoms,
periodic properties of the elements, nuclear chemistry, and chemical bonding. This is taken
concurrently with a laboratory course.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to the basic concepts of chemistry.
● Preparing students for other advanced chemistry courses, material science, practical, environmental, and electronics courses.
● Enabling students to follow subjects related to the chemistry of elements, liquid and solid
state, and spectroscopy.
Course Content
(weekly plan)
Week 1: Introduction
Week 2: Basic terms and expressions
Week 3: Metric units in chemistry
Week 4: Atomic and molecular masses
Week 5: Matter and the composition of matter (atoms, elements and PSE, molecules and compounds)
Week 6: Basic calculations in chemistry
Week 7: Appearance of matter (aggregate state and phases, gases, liquids and solutions, solids)
Week 8: MID-TERM EXAM WEEK
Week 9: Chemical reactions and chemical equilibrium
Week 10: Acids and bases
Week 11: pH
Week 12: Complexes
Week 13: Electrochemistry
Week 14: Thermodynamic considerations
Week 15: Kinetic consideration and stoichiometry
26
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: Lab safety
Week 3, Lab 2: Atomic structure and electron configurations
Week 4, Lab 3: Naming inorganic compounds; Molecular mass calculation and percent composition
Week 5, Lab 4: Amount of substance and concentrations
Week 6, Lab 5: Reactions of Group I and Group II cations; Basic lab equipment
Week 7, Lab 6: Reactions of cations Groups III, IV and V
Week 8:MID-TERM EXAM WEEK
Week 9, Lab 7: pH value: Calculations and experimental determination
Week 10 Lab 8: Buffer capacity
Week 11, Lab 9: Determining HCl concentration: Acid-base titration
Week 12, Lab 10: Separation of photosynthetic pigments from higher plants by paper chromatography
Week 13, Lab 11: Determination of iron content in green vitriol
Week 14: Preparation for practical exam
Week 15: Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Name the units used in chemistry
2. Describe atomic and molecular structures
3. Recall chemical reactions
4. Clarify electrochemistry
5. Describe stoichiometry
6. Grasp skills needed in the chemistry lab
7. Apply basic calculations needed for more advanced courses: preparing molar, percent
solutions, etc.
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature
Petrucci, R. H., Harwood, W. S., & Herring, F. G. (2007). General Chemistry: Principles and
Modern Applications, 9th ed. Upper Saddle River, NY, USA: Prentice Hall
Recommended Literature Whitten K., Davis R., Peck L., & Stanley G. (2010). General Chemistry, 7th ed. California, USA:
Brooks/Cole.
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 3 45
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 15 15
Preparation for Final Examination 1 15 15
27
Assignment / Homework / Project 20 20
Seminar / Presentation 20 20
Total Workload 149
ECTS Credit (Total Workload / 25) 6
Course Code: GBE 106 Course Name: EVOLUTION AND SYSTEMATICS
Level: Undergraduate Year: I Semester: I ECTS Credits: 6
Status: Mandatory Hours/Week: 3+2 Total Hours: 45+30
Course Description
The process of evolution generated the diversity of life on Earth today and in the geological past. The
course gives an overview of evolutionary forces and how they affected life from its beginnings to the
diversity we have today. Further on this course aims to generate a comprehensive review of the
diversity of life on earth through the domains: bacteria, archaea and eukarya. Fortunately, the structure
of this extraordinary diversity, generated by the process of evolution, can be discovered using the
methods of systematics. Systematics, therefore, provides a way to organize the diversity surrounding
us, and make sense of it in an evolutionary framework.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to genomes an their evolution
● Explaining the concept of descendants with modification.
● Providing basic concepts of evolution of populations
● Describing how life began on earth.
● Teaching the tree of life and basics of phylogeny
● Explaining diversity of single cell organisms
● Giving an overview of plant diversity
● Giving an overview of the diversity of invertebrates and vertebrates
● Providing basic information about human evolution
Course Content
(weekly plan)
Week 1: Introduction to the course
Week 2: Genomes and their evolution
Week 3: Descendant with modification
Week 4: The evolution of populations
Week 5: The origin of species
Week 6: History of Life on Earth
Week 7: Workshop
Week 8: MID-TERM EXAM WEEK
Week 9: Phylogeny and the tree of life
Week 10: Bacteria, Archaea, Protista
Week 11: Plant Diversity
Week 12: Into to Animal diversity
Week 13: Invertebrates
Week 14: Vertebrates
Week 15: Evolution of behavior
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS:
Lab 1-10 – A series of worksheet and practical exercises designed to understand the fundaments of evolution,
systematics and diversity.
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
Laboratory work
Quiz 0 % Lab/Practical Exam 20 %
28
Assessment Methods
Description (%)
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 30 % Class Deliverables 0 %
Presentation 0 % Final Exam 30 %
Total 100 %
Learning Outcomes
On successful completion of this course, students should be able to:
1. Recall the basics of life on earth beginnings
2. Comprehend the concept of descendant with modifications
3. Identify the basic concepts of evolution
4. Design and set up experiments in a bioethical manner
5. Understand the concept of diversity
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Urry, L. A., Cain, M. L., Wasserman, S. A., Minorsky, P. V., & Reece, J. B. (2017). Campbell biology. Pearson Education, Incorporated.
Recommended Literature
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 3 45
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 15 15
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 20 20
Seminar / Presentation 20 20
Total Workload 149
ECTS Credit (Total Workload / 25) 6
Course Code: PHY 104 Course Name: GENERAL PHYSICS
Level: Undergraduate Year: I Semester: II ECTS Credits: 6
Status: Mandatory Hours/Week: 3+2 Total Hours: 45+30
Course Description
This course offers modules of general physics which allows students to acquire practical and
useful basic knowledge in this field. Topics include introduction to thermodynamics, fluids,
kinetic theory of gases, relativity, atoms and etc.. Students will solve problems through example
exercises. This is taken concurrently with a laboratory course.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Learn the basic principles in thermodynamics
● Comprehend the basic principles in electromagnetism
● Learn the basic principles in atomic and nuclear physics
● Understand the importance of physics that are necessary for the further courses in the curriculum
Course Content
(weekly plan)
Week 1: Introduction to course
Week 2: Fluids and pressure
Week 3: Temperature and heat
Week 4: The First Law of Thermodynamics
Week 5: The Second Law of Thermodynamics and entropy
29
Week 6: Kinetic Theory of Gasses
Week 7: Preparation for the Midterm Exam (Quiz 1)
Week 8: MID-TERM EXAM WEEK
Week 9: Coulomb's Law
Week 10: Electric Fields
Week 11: Electrical Circuits
Week 12: Electromagnetic Oscillations and Alternating Current
Week 13: Relativity, Photons, and Matter
Week 14: Atoms and nuclear physics
Week 15: Preparation for the Final Exam (Quiz 2)
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Lab 1: Fluids
Lab 2: Pressure
Lab 3: Temperature and heat
Lab 4: The First Law of Thermodynamics
Lab 5: The Second Law of Thermodynamics
Lab 6: Entropy
Lab 7: The Kinetic Theory of Gasses
Week 8: MID-TERM EXAM WEEK
Lab 9: Coulomb's Law,
Lab 10: Electric Fields
Lab 11: Electrical Circuits
Lab 12: Electrical circuits – Laws
Lab 13: Relativity, Photons, and Matter
Lab 14: Atoms and nuclear physics
Lab 15: Overview
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Lectures
● Practical Sessions
● Exercises
● Presentations
Assessment Methods Description (%)
Quiz 20 % Lab/Practical Exam 0 %
Homework 20 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Comprehend the basic principles in electromagnetism and thermodynamics
2. Learn the basic principles in atomic and nuclear physics
3. Perceive physics as a crucial filed for the further development of genetics and
bioengineering
4. Understand the basic principle of physics that are crucial for the living organism
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Halliday, D., Resnick, R., & Walker, J. (2014). Fundamentals of physics extended, 10th ed. John
Wiley & Sons.
Recommended Literature
Giancoli, D.C. (2000). Physics for scientist and engineers. New Jersey, NJ, USA: Prentice Hall.
Bueche, F.J. & Hecht, E. (2008). Theory and problems of College Physics, 9th ed. McGraw-Hill
Companies.
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
30
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 3 45
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 15 15
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 40 40
Seminar / Presentation 0 0
Total Workload 149
ECTS Credit (Total Workload / 25) 6
Course Code: GBE 105 Course Name: HISTOLOGY AND EMBRYOLOGY
Level: Undergraduate Year: I Semester: II ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course provides a broad overview of cellular composition, their integration into tissues, all
tissue type structures, their integration into organs. It provides students an introduction to tissue
and organ structure and function. The first part of the course focuses on main tissue types:
epidermis, connective tissue, muscle and nervous tissue. The second part of the course focus on
major organ systems including: circulatory system, lymphoid system, digestive system,
respiratory system, urogenital system, endocrine system, sensory system. The third part of the
course focuses on the basics of human embryology and the development of a zygote into an
entire organism.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Providing a theoretical and applied knowledge in the field of histology and embriology
● Comprehending the cellular components of various tissue types
● Understanding the metabolism of cells within various tissue
● Learning normal normal tissue composition within various organs
● Providing a basis for understanding pathological findings
● Learning to recognize various tissue types and organs on histological slides
● Providing basic embryological knowledge
Course Content
(weekly plan)
Week 1: Introduction to the methods of study in histology
Week 2: Epithilium
Week 3: Connective tissue: general features and adipose tissue
Week 4: Connective tissue: cartilage and bone
Week 5: Muscle tissue
Week 6: Nerve tissue
Week 7: Blood, Hematopoiesis and Immune System
Week 8: MID-TERM EXAM WEEK
Week 9: Lymphoid system
Week 10: Digestive System
Week 11: Glands associated with the digestive system and Respiratory System
Week 12: Skin and Urinary System
Week 13: Endocrine system
Week 14: Male and female reproductive systems
Week 15: Sensory organs
Week 16: FINAL EXAM WEEK
31
LABORATORY CONTENT
Lab 1: Epithilium
Lab 2: Connective tissue: general features and adipose tissue
Lab 3: Connective tissue: cartilage and bone
Lab 4: Muscle tissue
Lab 5: Nerve tissue Circulatory system, blood, hematopoiesis
Lab 6: Blood, Hematopoiesis and Immune System
Week 8: MID-TERM EXAM WEEK
Lab 7: Lymphoid system
Lab 8: Digestive System Urinary system
Lab 9: Glands associated with the digestive system and Respiratory System
Lab 10: Skin and Urinary System
Lab 11: Endocrine system
Lab 12: Male and female reproductive systems
Lab 13: Sensory organs
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Lectures
● Practical Sessions
● Exercises
● Presentations
Assessment Methods Description (%)
Quiz 0% Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 30 % Class Deliverables 0 %
Presentation 0 % Final Exam 30 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Understand the cellular composition of tissues
2. Distinguish histological slides
3. Know the basic cellular and tissue composition of organs
4. Comprehend basics of embryological development from zygote to organism
5. Learn basic concepts of various cell type functions and metabolism within tissues and organs
6. Understand the integration of cells into tissues, organs and organ systems
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Junqueira, L. C., & Carneiro, J. (2005). Basic histology text and atlas, 11th ed. London, UK:
McGraw Hill.
Recommended Literature Sadler, T. W. (2011). Langman's medical embryology, 12th ed. Philadelphia, Pennsylvania, USA:
Lippincott Williams & Wilkins.
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 12 12
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 18 18
Seminar / Presentation 18 18
32
Total Workload 127
ECTS Credit (Total Workload / 25) 5
Course Code: BOS 102 Course Name: BOSNIAN/CROATIAN/SERBIAN LANGUAGE II
Level: Undergraduate Year: I Semester: II ECTS Credits: 2
Status: Elective Hours/Week: 0+2 Total Hours: 0+30
Course Description
The Bosnian course adopts a multi-level methodology that integrates the skills of reading,
writing, listening, grammar, vocabulary and conversation. These skills are reinforced at all levels
and Bosnian is the only teaching language used in the class, except when it is necessary to
facilitate the explanation of a grammar rule or lexical phrase to a beginner.
Course Objectives
The Bosnian Course seeks to develop in the students the basic linguistic skills, analytical skills,
and cultural and literary knowledge which will enable them to appreciate the uniqueness of other
cultures and to function in Bosnian speaking communities around the world.
Course Content
(weekly plan)
● Three ways of forming present tense in Bosnian language and recognizing what way will
be used with what verb; making simple sentences with verb in present tense
● Collocations to express doubt, uncertainty or ignorance about something
● Collocations to ask about the way and where to find something; adverbs left, right,
straight, back; Genitive and some of its use (with prepositions iz, od, do)
● Collocations about the Post office and Bank; Accusative and some of its use (object in sentence, with prepositions za, na)
● Collocations about the weather; formal/informal communications; present tense of verb
to have
● Conversation in restaurant; meeting with Bosnian meals and names for different kind of food (fruit, vegetable, meat, other); present tense of verb to have
● Present tense and use of verbs to buy, to sit, to tell; future tense compared with present
tense
● Conversation in clothing store; clothes and words related to it (colors, size...); imperative
● Comparison of adjectives, phonetic rule jotovanje
● Conversation about health and parts of body (with four-way cross-words)
Teaching Methods
Description
● Interactive lectures
● Discussions and group work
● Project, Presentations
Assessment Methods Description (%)
Quiz 0 % Lab/Practical Exam 0 %
Homework 0 % Term Paper 0 %
Project 0 % Attendance 30 %
Midterm Exam 30 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Understand Bosnian language
2. Communicate in basic Bosnian language
3. Appreciate and know a little about Bosnian culture.
Prerequisite Course(s)
(if any) Bosnian Language I
Language of Instruction Bosnian and English
Mandatory Literature Zenaida Karavdić, Bosnian language as a foreign language, IBU, Sarajevo 2010.
Bosanski jezik, Priručnik za strance, Minela Kerla, Nermina Alihodžić-Usejnovski,2013.
33
Recommended Literature Ronelle Alexander, Ellen Elias-Bursac Bosnian, Croatian, Serbian, a Textbook: With Exercises
and Basic Grammar, University of Wisconsin Press, 2006
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 14 2 28
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 0 0 0
Midterm Examination (1 week) 1 1 1
Final Examination (1 week) 1 1 1
Preparation for Midterm Examination 1 1 1
Preparation for Final Examination 1 1 1
Assignment / Homework / Project 14 1 1
Seminar / Presentation 4 4
Total Workload 50
ECTS Credit (Total Workload / 25) 2
Course Code: TDE 102 Course Name: TURKISH LANGUAGE II
Level: Undergraduate Year: I Semester: II ECTS Credits: 2
Status: Elective Hours/Week: 0+2 Total Hours: 0+30
Course Description
This is the second part of a two-part course series offered at the university. It builds upon the
concepts that students acquired in the previous semester as the course covers basic grammatical
rules and focuses on practicing everyday use of the language. Just like the first part of this series,
this course is also offered to all students.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
✔ After completion of the course students will be able to speak, understand, read and write
more advanced Turkish.
✔ Enable the student to use Turkish in everyday life situations
Teaching Methods
Description
● Interactive lectures and communication
with students
Assessment Methods Description (%)
Quiz 0 % Lab/Practical Exam 0 %
Homework 10 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 10 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Start using Turkish language
2. Be able to communicate in Turkish
3. Read articles in Turkish
4. Write articles in Turkish
5. Grammar basics
Prerequisite Course(s)
(if any) Turkish Language I
Language of Instruction Turkish
Mandatory Literature Ozturk, T., et al. (2004). Gökkuşağı Türkçe Ders Kitabı 1. Cilt. Dilset Yayınları: Istanbul,
Turkey.
34
Ozturk, T., et al. (2004). Gökkuşağı Türkçe Çalışma Kitabı 1.Cilt. Dilset Yayınları: Istanbul,
Turkey.
Ozturk, T., et al. (2005). Gökkuşağı Türkçe Dilbigisi Kitabı 1. Cilt. Dilset Yayınları: Istanbul,
Turkey
Ozturk, T., et al. (2005). Gökkuşağı Türkçe Ders Kitabı 2. Cilt. Dilset Yayınları: Istanbul,
Turkey.
Ozturk, T., et al. (2005). Gökkuşağı Türkçe Çalışma Kitabı 2. Cilt. Dilset Yayınları: Istanbul,
Turkey.
Ozturk, T., et al. (2005). Gökkuşağı Türkçe Dilbigisi Kitabı 2. Cilt. Dilset Yayınları: Istanbul,
Turkey.
Recommended Literature
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 0 0 0
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 2 2
Preparation for Final Examination 1 8 8
Assignment / Homework / Project 3 3
Seminar / Presentation 3 3
Total Workload 50
ECTS Credit (Total Workload / 25) 2
35
Course Code: GRM 102 Course Name: GERMAN LANGUAGE II
Level: Undergraduate Year: 1 Semester: II ECTS Credits: 2
Status: Elective Hours/Week: 0+2 Total Hours: 0+30
Course Description
This is a continuation of Second Foreign Language I course. Interactive communication; grammatical
structures and vocabulary commonly used in newspapers, magazines, extended dialogues, readings
texts, and short stories; information about the culture of the target language through authentic
materials.
Course Objectives
These courses emphasize the use of the target language for active communication. They have the
following objectives:
● the comprehension of formal and informal spoken language;
● the acquisition of vocabulary and a grasp of language structure to allow for the accurate
reading of newspaper and magazine articles as well as modern literature;
● the ability to compose expository passages;
● the ability to express ideas orally with accuracy and fluency. Students will also learn valuable
test-taking strategies and self-evaluative skills.
Course Content
(weekly plan)
All Foreign courses improve grammar, speaking, listening and reading and writing skills. The highly-
trained and experienced staff use a wide range of learning materials and methods, including audio-
visual and ICT. All learners have an initial assessment and interview with a member of staff to
establish their level of that particular foreign language. To ensure maximum progress, this is followed
by an on-course diagnostic assessment to determine more precisely the specific language skills needed
by each learner. The class tutor and learner then agree an individual learning plan to record the
learner’s progress.
Teaching Methods
Description
(list up to 4 methods)
● Interactive lectures and communication with students
● Discussions and group work
● Presentations (at least 1 per student per semester)
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 0 %
Homework 0 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 40 % Class Deliverables 0 %
Presentation 10 % Final Exam 50 %
Total 100 %
Learning Outcomes
(please write 5-8 outcomes)
Upon successful completion of the courses in this discipline, the student will have acquired the
following knowledge and skills:
1. Demonstrate the confidence and listening/speaking skills necessary to participate successfully in
spontaneous aural/oral exchanges with native speakers of those particular languages.
2. Demonstrate reading comprehension of foreign language texts intended for developmental (or
higher level) foreign language courses.
3. Respond appropriately to written or spoken foreign language by writing paragraphs or short
essays that communicate ideas clearly.
Prerequisite Course(s) -
36
(if any)
Language of Instruction English
Mandatory Literature
● Schritte plus 2 Audio-CD zumArbeitsbuchmitinteraktivenÜbungen, Monika Bovermann,
Daniela Niebisch, Franz Specht, Sylvette Penning-Hiemstra
● Swick, Edward. The Everything Learning German Book: Speak, Write and Understand
Basic German in No Time, Adams Media; 1st edition, 2003.
Recommended Literature
/
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 0 0 0
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 2 2
Preparation for Final Examination 1 8 8
Assignment / Homework / Project 3 3
Seminar / Presentation 3 3
Total Workload 50
ECTS Credit (Total Workload / 25) 2
37
THIRD SEMESTER
Course Code: GBE 201 Course Name: GENETICS
Level: Undergraduate Year: II Semester: III ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course is an overall examination of the basic principles of genetics in prokaryotes and eukaryotes at the
levels of molecules, organelles, cells, as well as multicellular organisms. Topics include Mendelian and non-
Mendelian inheritance, structure and function of chromosomes, biological variation resulting from
recombination and mutation, extranuclear inheritance, cancer genetics, and population genetics. In addition,
the course is covering an introduction to genomics, proteomics and genetic engineering (new technologies).
This is taken concurrently with a laboratory course.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Helping students become familiar with the language of genetics.
● Providing students with a strong background in the principles of Mendelian, non-Mendelian, and extranuclear models of inheritance and enabling them to use this knowledge to track alleles through
generations, to categorize and predict genotypes and phenotypes.
● Detailing new technologies of genomics, proteomics and other -omics techniques.
● Explaining the Hardy-Weinberg equilibrium and the requirements for maintaining Hardy-Weinberg equilibrium in a population.
● Connecting genetics with classical science when necessary (e.g., molecular biology and cell biology).
Course Content
(weekly plan)
Week 1: Genes, genomes and genetic analysis
Week 2: DNA structure and genetic variation
Week 3: Transmission genetics, part I
Week 4: Transmission genetics, part II
Week 5: Chromosomes and sex-chromosome inheritance
Week 6: Genetic linkage and mapping
Week 7: Inheritance and mapping practice
Week 8: MID-TERM EXAM WEEK
Week 9: Human karyotype and chromosome behavior
Week 10: Genetics of bacteria and their viruses
Week 11: Genomics, proteomics and genetic engineering
Week 12: Molecular genetics of the cell cycle and cancer
Week 13: Mitochondrial DNA and extranuclear inheritance
Week 14: Introduction to population genetics
Week 15: Recap
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: Overview of Mendelian genetics – genetic crosses, part I
Week 3, Lab 2: Overview of Mendelian genetics – genetic crosses, part II
Week 4, Lab 3: Non-Mendelian genetics
Week 5, Lab 4: Probability in transmission genetics
Week 6, Lab 5: Probability in the prediction of progeny distributions
Week 7, Lab 6: Genetic linkage and mapping
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: Chi-square test
Week 10 Lab 8: DNA isolation: plasmid from bacterial cells (boiling method)
Week 11, Lab 9: DNA isolation: plant sample (CTAB method)
Week 12, Lab 10: DNA isolation: spider legs (Chelex method)
Week 13, Lab 11: Agarose gel electrophoresis
Week 14: Preparation for lab test
Week 15: Lab test
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
38
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 25 % Class Deliverables 20 %
Presentation 0 % Final Exam 35 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Recall genetics terminology: homozygous, heterozygous, phenotype, genotype, homologous
chromosome pair, etc.
2. Manage Mendelian genetics calculations
3. Assess non-Mendelian genetics
4. Critically discuss extranuclear inheritance
5. Interpret genetic mapping
6. Predict the genotype of bacterial and viral cells in question
7. Explain novel genomic and proteomic techniques, especially in relation to recombinant DNA
technology
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature Hartl, D. L. & Jones, E.W. (2009). Genetics: Analysis of Genes and Genomes, 7th ed. Sudbury, MA: Jones &
Bartlett Publishers.
Recommended
Literature
Hartl, D.L. (2020). Essential Genetics and Genomics, 7th ed. Burlington, MA: Jones & Barlett Learning.
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (14 weeks x Lecture hours per week) 14 2 28
Laboratory / Practice (13 weeks x Laboratory / Practice hours per week) 13 2 26
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 20 20
Preparation for Final Examination 1 25 25
Assignment / Homework / Project 20 20
Total Workload 123
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 211 Course Name: ORGANIC CHEMISTRY
Level: Undergraduate Year: II Semester: III ECTS Credits: 6
Status: Mandatory Hours/Week: 3+2 Total Hours: 45+30
Course Description
Organic chemistry with all different classes of compounds (hydrocarbons, alcohols, amines, carboxylic acids
etc.) is presented through the main chemical reactions of each class of organic compounds. The course
revolves around shared features and unifying concepts and it emphasizes principles that can be repeatedly
applied. Learning on this way, students will see that organic chemistry is integral to biology as well as to
their daily lives.
39
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● To introduce students to organic chemistry.
● To teach about the application to scientific and commercial fields.
● To understand the basics of organic chemistry needed for further studies.
● To learn to use the nomenclature for organic compounds.
● To learn the basic structures of organic molecules.
● To teach about the application to scientific and commercial fields.
● To understand the basics of organic chemistry needed for further studies.
● To learn the basic structures of organic molecules.
Course Content
(weekly plan)
Week 1: Introduction
Week 2: Electronic structure and covalent bonding
Week 3: Acids and bases
Week 4: Nomenclature, physical properties and structures of organic compounds
Week 5: Alkenes and alkynes
Week 6: Isomers and physical properties
Week 7: Benzene and its derivatives
Week 8: MIDTERM WEEK
Week 9: Delocalized electrons, UV/Vis Spectroscopy
Week 10: Carbonyl compounds Week 11: The organic chemistry of carbohydrates
Week 12: The organic chemistry of amino acids, peptides, proteins
Week 13: The organic chemistry of enzymes and vitamins
Week 14: The organic chemistry of metabolic pathways
Week 15: The organic chemistry of lipids and nucleic acids
Week 16: FINAL EXAM WEEK
Week 1-15 A series of laboratory and practical exercises
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods Description (%)
Quiz 20 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Interpret and use nomenclature of organic compounds
2. Recall chemical reactions in organic chemistry
3. Define and explain basic knowledge on alkanes, alkenes and alkynes
4. Interpret and apply knowledge related to alcohols, ethers, epoxides
5. Recognize the specific properties of benzene and its derivatives
6. Summarize fundamentals of organic chemistry of macromolecules
7. Design and manage a lab experiment in organic chemistry
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature Bruice, P.Y. (2009). Essential organic chemistry, 2nd ed. New York City, NY, USA: Pearson
Education
Recommended Literature McMurry, J. (2012). Organic Chemistry, 8th ed. California, USA: Brooks/Cole.
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
40
Lecture (15 weeks x Lecture hours per week) 15 3 45
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 15 15
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 20 20
Seminar / Presentation 20 20
Total Workload 149
ECTS Credit (Total Workload / 25) 6
Course Code: GBE 217 Course Name: MICROBIOLOGY
Level: Undergraduate Year: II Semester: III ECTS Credits: 4
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course is aimed at providing students with an introduction to microbiology. Students will become
familiar with history and scope, microbial structure and function, nutrition, growth, control of
microorganisms by physical and chemical agents, and the scientific, agronomic, pharmaceutical, and
medical applications of microorganisms. Furthermore, students will gain a sound introduction to diversity
of the microbial world, microbial taxonomy, proteobacteria, high and low GC gram-positives, and archaea.
Furthermore, experimental design and manipulation with microorganisms, their analysis and applications
will be covered. This is taken concurrently with a laboratory course.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to diversity of the microbial world,
● Understand the basics of microbial taxonomy, proteobacteria, archaea.
● Do experimental design and manipulation with microorganisms,
● Conduct microbial analysis and understand their possible application.
Course Content
(weekly plan)
Week 1: Introduction to the course
Week 2: History and development of microbiology
Week 3: Functional anatomy of bacteria and bacterial staining techniques
Week 4: Bacterial Metabolism
Week 5: Microbial Growth
Week 6: Control of Microbial Growth and Antibiotics
Week 7: Workshop on using CLSI and EUCAST guidelines for determination of bacterial sensitivity towards
antibiotics
Week 8: MIDTERM EXAM WEEK
Week 9: Genetics of bacteria & biotechnology
Week 10: Bacterial classification
Week 11: Workshop on bacterial identification using biochemical tests and molecular diagnostics
Week 12: Bacterial families– general features of species
Week 13: Bacterial families– general features of species
Week 14: General features of eukaryotes studied in microbiology
Week 15: Basics of Virology
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1, Beginning of classes
Week 2, Lab 1: Flow of material in microbiological laboratory, sterilization and disinfection
Week 3, Lab 2: Bacterial Staining Techniques
Week 4, Lab 3: Media Preparation
Week 5, Lab 4: Bacterial Growth Curve
Week 6, Lab 5: Disk diffusion bauer Kirby Method of antibiotic testing
Week 7, Lab 6: MIC determination
Week 8: MIDTERM WEEK
Week 9, Lab 7: Species identification in different samples
Week 10 Lab 8: Normal flora testing: thorat and nose swabs
41
Week 11, Lab 9: Enterobacteriaceae, urine analysis
Week 12, Lab 10: Integration of all testing procedures in bacteriology
Week 13, Lab 11: Preparation for practical exam
Week 14, Preparation for practical exam
Week 15, Practical Exam from Lab Course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Guest instructors
● Research projects
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 30 % Class Deliverables 0 %
Presentation 0 % Final Exam 30 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Working knowledge of basic bacterial laboratory techniques, as well as to the foundations of
Microbiology - the concepts of classification, evolution and growth of microorganisms, as well as
a factual and laboratory knowledge of specific microorganism types.
2. Understanding of microbial ecology and practical uses for microorganisms, as well as how they
relate to basic biological concepts.
3. Establish a firm foundation for future Microbiology courses and/or a good appreciation of
concepts needed to make reasoned choices in their everyday lives.
4. In general, they should understand how microorganisms survive where they do, how they are
related, and how they interact with us.
5. In the laboratory they should acquire basic bacteriological skills and should be able to successfully
use them.
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature Tortora, G. J., Funke, B. R., Case, C. L., & Johnson, T. R. (2004). Microbiology: an introduction (Vol. 9).
San Francisco, CA: Benjamin Cummings.
Recommended Literature
Willey, J., Sherwood L., & Woolverton C. (2008). Microbiology, 7th ed. New York City, NY, USA:
McGraw-Hill Science.Harvey R., Cornelissen C., & Fisher, B. (2012). Microbiology, 3rd ed.
Philadelphia, PA, USA: Lippincott Williams & Wilkins.
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 12 12
Preparation for Final Examination 1 16 16
Assignment / Homework / Project 4 4
Seminar / Presentation 4 4
Total Workload 100
ECTS Credit (Total Workload / 25) 4
42
Course Code: GBE 219 Course Name: MOLECULAR BIOLOGY I
Level: Undergraduate Year: II Semester: III ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
Molecular Biology I offers students an introduction to the basic principles of DNA, RNA, and
proteins, as well as replication, transcription and translation. The course covers the topics on
small molecules, macromolecules (structure, shape, and information), energy and
biosynthesis, protein function, and basic genetic mechanisms. At the end of the course,
students are expected to understand the central dogma of molecular biology and to know its
specificities in different forms of life: prokaryotes and eukaryotes. This is taken concurrently
with a laboratory course, and it is the first part of the two-part molecular biology lecture series.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Making a detailed study on the structure and function of macromolecules.
● Explaining the nature of the genetic material.
● Giving an overview of the passage of information from gene to protein.
● Explaining the processes of DNA replication, repair, recombination and transposition.
● Covering certain techniques of molecular biology.
Course Content
(weekly plan)
Week 1: Cells and genomes
Week 2: Cell chemistry and bioenergetics, part I
Week 3: Cell chemistry and bioenergetics, part II
Week 4: The shape and structure of proteins
Week 5: Protein function
Week 6: DNA and chromosomes
Week 7: The global structure of chromosomes and genome evolution
Week 8: MID-TERM EXAM WEEK
Week 9: DNA replication and repair
Week 10: Recombination mechanisms
Week 11: Transposable elements
Week 12: How cells read the genome: from DNA to RNA
Week 13: How cells read the genome: from RNA to protein; RNA origins of life
Week 14: Practice problems
Week 15: Recap
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: General laboratory rules of behavior and safety considerations; How to use a
micropipette
Week 3, Lab 2: Introduction to spectrophotometry
Week 4, Lab 3: DNA isolation from buccal swab (salting-out method)
Week 5, Lab 4: DNA isolation from chicken liver (salting-out method)
Week 6, Lab 5: Determining DNA concentration by quantitative spectrophotometric
measurement
Week 7, Lab 6: Agarose gel electrophoresis with Fast Blast stain
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: Restriction endonucleases (theory)
Week 10 Lab 8: Restriction digestion of DNA fragments
Week 11, Lab 9: Agarose gel electrophoresis with SafeView Nucleic Acid stain
Week 12, Lab 10: Restriction mapping
Week 13, Lab 11: Lab test
Week 14: Preparation for practical exam
Week 15: Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Laboratory work
Assessment Methods Description (%) Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
43
Project 0 % Attendance 0 %
Midterm Exam 25 % Class Deliverables 20 %
Presentation 0 % Final Exam 35 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Recall the molecular structure of DNA/RNA and proteins
2. Describe the basis of the central dogma of molecular biology
3. Explain the molecular mechanisms underlying transcription and translation
4. Illustrate the role of genes and proteins in normal functioning of the cell
5. Examine the basic principles of molecular techniques
6. Conduct isolation of DNA from various material
7. Use spectrophotometry to determine the concentration and purity of DNA/RNA
8. Conduct gel electrophoresis
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature Alberts, B., Johnson, A., Lewis, J., Morgan, D., Raff, M., Roberts, K., & Walter, P. (2015).
Molecular Biology of the Cell, 6th ed. New York, NY: Garland Science.
Recommended Literature
Student handout with practice problems
Sambrook, J., & Russell, D. W. (2006). The condensed protocols from molecular cloning: A
laboratory manual. Cold Spring Harbor, NY, USA: CSHL Press
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (14 weeks x Lecture hours per week) 14 2 28
Laboratory / Practice (13 weeks x Laboratory / Practice hours per week) 13 2 26
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 20 20
Preparation for Final Examination 1 25 25
Assignment / Homework / Project 20 20
Total Workload 123
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 323 Course Name: BIOMEDICAL INSTRUMENTATION
Level: Undergraduate Year: II Semester: III ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course will introduce the students to basic biomedical engineering technology so that they can
understand and evaluate (and perhaps design) systems and devices that can measure, test, and acquire
biological information. The course will encompass systems of human physiology as well as the bio-
signals they generate. The focus will also be on biosensors, transducers, bio-electrodes used for
acquisition, and amplifiers for measuring bio-potentials. Some bioethics will be discussed as well.
Introduction to fundamentals of biomedical instrumentation, biomedical sensors and physiological
transducers, biomedical recorders, patient monitoring systems, arrhythmia and ambulatory monitoring
instruments, cardiac pacemakers, cardiac defibrillators, MRI and CT systems are the topics covered
within the course.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to basic biomedical instrumentation.
44
● Explaining working principles of biomedical instrumentation.
● Familiarizing students with patients’ security.
● Giving an outline of regulations related to biomedical instrumentation.
Course Content
(weekly plan)
Week 1: Introduction to biomedical instrumentation
Week 2: Biomedical sensors and transducers and bioelectric amplifiers
Week 3: Electrocardiographs
Week 4: Blood pressure measurement and physiological pressure and other cardiovascular
measurements and devices
Week 5: Instrumentation for measurement of brain parameters
Week 6: Biological impedance measurement
Week 7: Respiratory system and its measurement
Week 8: MID-TERM EXAM WEEK
Week 9: Intensive and coronary care units and pacemakers and defibrillators
Week 10: Electrosurgery
Week 11: Lasers and medical imaging equipment
Week 12: Radiology and nuclear medicine equipment and medical ultrasound
Week 13: Magnetic resonance imaging
Week 14: Computed tomography imaging
Week 15: Patients’ security and law
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT:
Week 1-11: This course is designed so that the students get acquainted with all the instruments
mentioned in the lectures through a series of virtual labs. Through these labs they will learn how to
handle the instruments and, at the same time, interpret the results they obtain.
Teaching Methods
Description
(list up to 4 methods)
● Interactive lectures and communication with students
● Discussions and group work
● Consultation
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
(please write 5-8 outcomes)
On successful completion of this course, students should be able to:
1. Recall basic terminology related to biomedical instrumentation
2. Recognize biomedical instrumentation
3. Practice on a huge area of biomedical instrumentation
4. Interpret principles of work of biomedical instrumentation
5. Evaluate patients' security and law
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature Raden, J.F. (2010). Handbook of Modern Sensors, Physics, Designs and Applications. New York, NY,
USA: Springer-Verlag
Recommended Literature
Enderle, J. & Bronzino, J. (2011). Introduction to Biomedical Engineering,3rd ed. Burlington, MA, USA:
Elsevier Academic Press
Webster, J.G. & Eren, H. (2014). Measurement, Instrumentation, and Sensors Handbook, 2nd ed. Boca
Raton, FL, USA: CRC Press
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
45
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 14 14
Seminar / Presentation 18 18
Total Workload 125
ECTS Credit (Total Workload / 25) 5
FOURTH SEMESTER
Course Code: GBE 202 Course Name: BIOSTATISTICS
Level: Undergraduate Year: II Semester: IV ECTS Credits: 4
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
This is a general introduction to descriptive and inferential statistics. Topics such as techniques
and principles for summarizing data, estimation, hypothesis testing, and decision-making will be
covered. Students are instructed on the proper use of statistical software to manage, manipulate,
and analyze data and to prepare summary reports and graphical displays.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Explaining basic statistical tests.
● Evaluating the results of statistical tests.
● Demonstrating modern statistical methods including descriptive and inferential statistics.
● Showing students that statistics is an important tool in many different disciplines, and is an important research tool.
Course Content
(weekly plan)
Week 1: Introduction to biostatistics
Week 2: Descriptive statistics
Week 3: Exact test of goodness-of-fit
Week 4: Chi-square test
Week 5: Fisher’s exact test
Week 6: Student’s t-test
Week 7: Paired t-test
Week 8: MID-TERM EXAM WEEK
Week 9: One-way anova
Week 10: Nested anova
Week 11: Correlation and linear regression
46
Week 12: Spearman rank correlation
Week 13: Kruskal-Wallis test
Week 14: Wilcoxon signed-rank test
Week 15: Preparation for final exam
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: Descriptive statistics
Week 3, Lab 2: Exact test of goodness-of-fit
Week 4, Lab 3: Chi-square test
Week 5, Lab 4: Fisher’s exact test
Week 6, Lab 5: Student’s t-test
Week 7, Lab 6: Paired t-test
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: One-way anova
Week 10 Lab 8: Nested anova
Week 11, Lab 9: Correlation and linear regression
Week 12, Lab 10: Spearman rank correlation
Week 13, Lab 11: Kruskal-Wallis test
Week 14, Lab 12: Wilcoxon signed-rank test
Week 15: Exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Deliver an effective presentation of data
2. Perform probability testing
3. Explain the fundamentals of hypothesis testing
4. Make tables and diagrams
5. Operate descriptive statistics in excel
6. Perform the student t test
7. Perform ANOVA
8. Perform regression analysis in excel
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature
McDonald, J. H. (2009). Handbook of biological statistics (Vol. 2, pp. 6-59). Baltimore, MD:
sparky house publishing.
Recommended Literature Bhishma R. (2005). Probability and Statistics for Engineers, 2nd ed. New York City, NY, USA:
Sitech
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
47
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 12 12
Preparation for Final Examination 1 16 16
Assignment / Homework / Project 4 4
Seminar / Presentation 4 4
Total Workload 100
ECTS Credit (Total Workload / 25) 4
Course Code: GBE 206 Course Name: MOLECULAR BIOLOGY II
Level: Undergraduate Year: II Semester: IV ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
As the second part of a two-part course series in molecular biology, this course covers advanced
topics on gene expression and regulation, protein modifications and ubiquitination, small RNAs
and cell signaling. Current topics, like RNA interference and epigenetics, as well as techniques
in molecular biology are also introduced. This is taken concurrently with a laboratory course.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Enabling students to move beyond their introductory textbooks towards a deeper
understanding of modern molecular biology.
● Providing detailed descriptions of cell signaling.
● Providing an insight into the regulation of gene expression at different levels.
● Presenting the most important techniques in molecular biology.
Course Content
(weekly plan)
Week 1: Molecular mechanisms of mutation and DNA repair
Week 2: Molecular mechanisms of gene regulation, part I
Week 3: Molecular mechanisms of gene regulation, part II
Week 4: Post-translational modifications and ubiquitination
Week 5: Cell signaling, part I
Week 6: Cell signaling, part II
Week 7: Cell death
Week 8: MID-TERM EXAM WEEK
Week 9: Genetic control of development, part I
Week 10: Genetic control of development, part II
Week 11: Stem cells and tissue renewal, part I
Week 12: Analyzing cells, molecules and systems, part I
Week 13: Analyzing cells, molecules and systems, part II
Week 14: Visualizing cells
Week 15: Recap
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: Buffer preparation
Week 3, Lab 2: Protein isolation from kiwi plant
Week 4, Lab 3: β-glucosidase isolation from white button mushroom; protein salting-out
Week 5, Lab 4: Protein quantification: Bradford method
48
Week 6, Lab 5: Preparation of animal tissue for protein isolation: Chicken muscle
Week 7, Lab 6: Protein isolation from a bacterial culture
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: Protein spectrophotometry by Lowry
Week 10 Lab 8: PAGE: Introduction and safety considerations
Week 11, Lab 9: SDS-PAGE, part I
Week 12, Lab 10: SDS-PAGE, part II
Week 13, Lab 11: Result analysis
Week 14: Preparation for lab test
Week 15: Lab test
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 25 % Class Deliverables 20%
Presentation 0 % Final Exam 35 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Deduce gene expression levels and regulation in prokaryotes and eukaryotes 2. Debate molecular mechanisms underlying the processes of gene regulation in different
organisms 3. Understand the most important cell signaling pathways 4. Understand the importance of stem cells in different types of tissues, as well as in tissue
repair and regeneration 5. Perform protein isolation in the laboratory from various samples: animal, plant, bacterial 6. Operate quantification of the isolated proteins in the laboratory 7. Perform SDS-PAGE
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature
Hartl, D.L. (2020). Essential Genetics and Genomics, 7th ed. Burlington, MA: Jones & Barlett
Learning.
Alberts, B., Johnson, A., Lewis, J., Morgan, D., Raff, M., Roberts, K., & Walter, P. (2015).
Molecular Biology of the Cell, 6th ed. New York, NY: Garland Science.
Recommended Literature
Prabakaran, S., Lippens, G., Steen, H., & Gunawardena, J. (2012). Post‐translational
modification: nature's escape from genetic imprisonment and the basis for dynamic information
encoding. Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 4(6), 565-583.
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (14 weeks x Lecture hours per week) 14 2 28
Laboratory / Practice (13 weeks x Laboratory / Practice hours per week) 13 2 26
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 20 20
Preparation for Final Examination 1 25 25
Assignment / Homework / Project 20 20
Total Workload 123
49
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 210 Course Name: BIOCHEMISTRY
Level: Undergraduate Year: II Semester: IV ECTS Credits: 6
Status: Mandatory Hours/Week: 3+2 Total Hours: 45+30
Course Description
This course provides a broad survey of biochemistry from the molecular aspects. It covers the major
chemical and biological foundations of biochemistry. The first section of the course focuses on topics
related to carbohydrates, proteins, lipids and nucleic acids. Special emphasis is given to the processes related
to macromolecule behavior in water solutions. The second part of the course focuses on the metabolism of
carbohydrates, lipids and nitrogen, as well as cellular respiration and hormone metabolism, that is,
metabolism integration. All these cycles are analyzed through a molecular perspective. The course is
accompanied by a practical lab course.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Providing a theoretical and applied background in the field of biochemistry.
● Covering the basic chemistry of the most important biological macromolecules, including amino
acids, peptides, lipids and carbohydrates.
● Illustrating the metabolism of carbohydrates, lipids and nitrogen.
● Giving an overview of cellular respiration.
Course Content
(weekly plan)
Week 1: Introduction to biochemistry class
Week 2: Water
Week 3: Amino acids, peptides and proteins
Week 4: Enzymes
Week 5: Carbohydrates and glycobiology
Week 6: Lipids
Week 7: Introduction to metabolism; Glycolysis
Week 8: MID-TERM EXAM WEEK
Week 9: Gluconeogenesis, the pentose phosphate pathway, and glycogen metabolism
Week 10: The citric acid cycle
Week 11: Electron transport and ATP synthesis
Week 12: Lipid metabolism
Week 13: Amino acid metabolism
Week 14: Nucleotide metabolism
Week 15: Hormonal regulation and integration of mammalian metabolism
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: Basic calculations
Week 3, Lab 2: Solution preparation, buffers
Week 4, Lab 3: Quantitative estimation of amino acids by ninhydrin
Week 5, Lab 4: Separation of amino acids by TLC
Week 6, Lab 5: Titration curves of amino acids
Week 7, Lab 6: Isoelectric precipitation of proteins
Week 8:MID-TERM EXAM WEEK
Week 9, Lab 7: Effect of temperature on enzyme kinetics
Week 10 Lab 8: Effect of enzyme concentration on enzyme kinetics
Week 11, Lab 9: Effect of substrate concentration on enzyme kinetics
Week 12, Lab 10: Qualitative analysis of carbohydrates
Week 13, Lab 11: Estimation of saponification value of fats and oils
Week 14: Preparation for lab test
50
Week 15: Lab test
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 20 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 25 % Class Deliverables 0 %
Presentation 0 % Final Exam 35 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Summarize amino acids and proteins
2. Categorize enzymes and explain their kinetics
3. Identify carbohydrates
4. Classify lipids
5. Interpret gluconeogenesis, the pentose phosphate pathway, and glycogen metabolism
6. Illustrate Krebs cycle, electron transport chain and oxidative phosphorylation
7. Explain the basics of metabolism from molecular and medical perspective
8. Use basic laboratory skills and procedures in biochemistry labs
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature
Nelson, D. L, & Cox, M. M. (2017). Lehninger Principles of Biochemistry, 7th ed. Gordonsville, VA:
Macmillan Learning.
Horton, R. A., Moran, L. A., Scrimgeour, G, Perry, M., & Rawn, D. (2006). Principles of Biochemistry, 4th
ed. London, UK: Pearson Education.
Recommended Literature Boyer, R. F. (2006). Concepts in biochemistry, 3rd ed. Hoboken, New Jersey, USA: Wiley.
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (14 weeks x Lecture hours per week) 14 3 42
Laboratory / Practice (13 weeks x Laboratory / Practice hours per week) 13 2 26
Midterm Examination (1 week) 1 3 3
Final Examination (1 week) 1 3 3
Preparation for Midterm Examination 1 25 25
Preparation for Final Examination 1 35 35
Assignment / Homework / Project 15 15
Total Workload
149
ECTS Credit (Total Workload / 25) 6
Course Code: GBE 330 Course Name: BIOSENSORS
Level: Undergraduate Year: II Semester: IV ECTS Credits: 5
Status: Mandatory Hours/Week: 2 + 2 Total Hours: 30 + 30
Course Description
Biosensors have emerged as an exciting research area due to the integration of molecular biology with
electronics to form devices of modern time. This course will introduce fundamentals of microbiology
and biochemistry from engineering prospective and give a comprehensive introduction to the basic
features of biosensors. Types of most common biological agents and the ways in which they can be
51
interfaced with a variety of transducers to create a biosensor for biomedical applications will be
discussed. Focus will be on optical biosensors, immunobiosensors, and nanobiosensors. New
technologies, related research highlights, and main machine interface will also be covered.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to sensors, especially biosensor-technology to genetics and bioengineering
students and the ones who are interested in the subject.
● Explaining basic concepts in biosensing and bioelectronics.
● Clarifying typical problems in biosensing and bioelectronics.
Course Content
(weekly plan)
Week 1: Introduction/Overview of the field and applications of biosensors
Week 2: Measurement accuracy and sources of errors
Week 3: Characteristics and operational modes of sensors
Week 4: Static and dynamic characteristics of biosensors
Week 5: Measurement standards
Week 6: Sensor networks and communication
Week 7: Preparation for mid-term exam
Week 8: MID-TERM EXAM WEEK
Week 9: Biological sensing elements
Week 10: Calorimetric biosensors
Week 11: Potentiometric biosensors
Week 12: Amperometric biosensors
Week 13: Optical biosensors
Week 14: Piezoelectric biosensors
Week 15: Immunobiosensors
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: Introduction/Overview of the field and applications of biosensors
Week 3, Lab 2: Measurement accuracy and sources of errors
Week 4, Lab 3: Characteristics and operational modes of sensors
Week 5, Lab 4: Static and dynamic characteristics of biosensors
Week 6, Lab 5: Measurement standards
Week 7, Lab 6: Sensor networks and communication
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: Biological sensing elements
Week 10 Lab 8: Calorimetric biosensors
Week 11, Lab 9: Potentiometric and amperometric biosensors
Week 12, Lab 10: Optical biosensors
Week 13, Lab 11: Piezoelectric and immunobiosensors
Week 14: Preparation for practical exam
Week 15: Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Describe physical operating principles of biosensors
2. Describe the biology of sensing elements
3. Differentiate a variety of biosensors
4. Recognize limitations of biosensors
5. Predict application areas for different types of biosensors
6. Distinguish measurement accuracy and sources of errors in biosensors
52
7. State technical characteristics of biosensors
8. Discuss measurement standards and sensors network and communication
Prerequisite Course(s)
(if any)
None.
Language of Instruction English
Mandatory Literature Raden, J.F. (2010). Handbook of Modern Sensors, Physics, Designs and Applications. New York, NY,
USA: Springer-Verlag
Recommended Literature
Enderle, J. & Bronzino, J. (2011). Introduction to Biomedical Engineering, 3rd ed. Burlington, MA,
USA: Elsevier Academic Press
Webster, J.G. & Eren, H. (2014). Measurement, Instrumentation, and Sensors Handbook, 2nd ed. Boca
Raton, FL, USA: CRC Press
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 1 18 18
Seminar / Presentation 1 14 14
Total Workload 125
ECTS Credit (Total Workload / 25) 5
FIFTH SEMESTER
Course Code: GBE 303 Course Name: INTERNSHIP
Level: Undergraduate Year: III Semester: V ECTS Credits: 5
Status: Mandatory Hours/Week: 0+4 Total Hours: 0+60
Course Description
Students must complete a 30-working-day (6 weeks) practice in a bio-company. Students are
expected to learn about a real working environment and get involved in many aspects of genetics
and bioengineering development processes. Also, they are expected to start understand what is
required for effective day-to-day laboratory maintenance and to develop the sense of
responsibility. Internship could be completed either in private or public biology-related sector.
Observations from practical training must be documented and presented in the form of a clear and
concise technical report (Internship Notebook). Student must also prepare a short portfolio with
a MS PowerPoint presentation.
53
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Encouraging students to develop a sense of responsibility.
● Enabling practical training.
● Teaching students to prepare reports.
Course Content
(weekly plan)
During this practice, students should be introduced to all types of work and practice that is
conducted in the company, institute, or laboratory.
Teaching Methods
Description Students acquire on-the-job training as they complete their practice.
Assessment Methods Description (%)
Quiz 0 % Lab/Practical Exam 0 %
Homework 0 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 0 % Class Deliverables 50 %
Presentation 0 % Final Exam 50 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Express the ability to work effectively as part of a team
2. Demonstrate interpersonal, organizational, and problem solving skills within a managed
environment
3. Practice personal responsibility
4. Describe and discuss information in oral, written or graphic forms in order to
communicate effectively with peers and tutors
5. Apply and analyze theory, techniques and relevant tools to the specification, analysis,
design, implementation and testing of samples
6. Judge on the company and/or team performance according to the work experience gained
during internship
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature N/A
Recommended Literature N/A
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 4 60
Defense (1 week) 1 30 30
Internship Notebook Preparation (1 week) 1 20 20
Seminar / Presentation 1 15 15
Total Workload 125
ECTS Credit (Total Workload / 25) 5
54
Course Code: GBE 307 Course Name: BIOINFORMATICS
Level: Undergraduate Year: III Semester: V ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
The aim of the course is to establish a basic background in the significant and more emerging
field of bioinformatics. Its main subjects are NCBI and Ensembl databases, DNA-, RNA- and
protein-based bioinformatics tools, as well as several new and emerging information tools.
Students are expected to have a working knowledge of genetics and molecular biology concepts
in order to fully benefit from utilization of available information sources. The course is organized
concurrently with a laboratory course in which students are applying bioinformatics in practice
in order to analyze DNA, RNA, and protein sequences, as well as to study phylogeny.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Showing the importance of bioinformatics as a method to overcome modern biomedical
research problems.
● Enabling skill development in software using, critical evaluation of the results and their interpretation.
● Illustrating how to work with DNA sequences.
● Explaining how to work with protein sequences.
● Illustrating how to construct phylogenetic trees.
Course Content
(weekly plan)
Week 1: Introduction to bioinformatics
Week 2: Access to sequence data and related information (genomic DNA databases)
Week 3: Access to sequence data and related information (RNA data, protein databases)
55
Week 4: Access to sequence data and related information (genome browsers, individual
genes/proteins, biomedical literature)
Week 5: Pairwise sequence alignment
Week 6: Basic Local Alignment Search Tool (BLAST)
Week 7: Multiple sequence alignment, part I
Week 8: MID-TERM EXAM WEEK
Week 9: Multiple sequence alignment, part II
Week 10: Advanced database searching, part I
Week 11: Advanced database searching, part II
Week 12: Molecular phylogeny and evolution, part I
Week 13: Molecular phylogeny and evolution, part II
Week 14: Bioinformatic approaches to RNA
Week 15: Recap
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: PubMed
Week 3, Lab 2: NCBI: Nucleotide and Gene databases
Week 4, Lab 3: UniProt
Week 5, Lab 4: UCSC Genome Browser
Week 6, Lab 5: Primer3Plus
Week 7, Lab 6: Pairwise sequence alignment; BLAST
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: Multiple sequence alignment, part 1
Week 10 Lab 8: Multiple sequence alignment, part 2
Week 11, Lab 9: Phylogenetics
Week 12, Lab 10: Protein domain and motif search
Week 13, Lab 11: Recap
Week 14: Preparation for lab exam
Week 15: Exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 20 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 25 % Class Deliverables 0 %
Presentation 0 % Final Exam 35 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Use PubMed for article browsing 2. Employ NCBI for sequence analysis 3. Perform similarity searches 4. Perform multiple sequence alignments 5. Discover different protein databases 6. Create phylogenetic trees
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature Pevsner, J. (2015). Bioinformatics and Functional Genomics, 3rd ed. Hoboken, NJ: John Wiley &
Sons.
Recommended Literature Database information
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
56
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 15 15
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 1 31 31
Seminar / Presentation 0 0
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 309 Course Name: HUMAN GENETICS
Level: Undergraduate Year: III Semester: V ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course will focus on concepts such as organization, structure, function, and mapping of the
human genome; biochemical and molecular basis, screening, prevention, and treatment of various
human diseases; genetic variation in humans; gene frequencies in human populations; human
developmental genetics, medical genetics, and other aspects of human heredity. This course
focuses on the role of genes in human biology. Selected areas of emphasis range from gene
structure and identification, inheritance mechanisms (how genes are passed from parent to
offspring), and how genes work within the cellular environment, mutations and the consequences
of these malfunctions (genetic diseases), to the genetic structure of whole populations, and finally
to ethical, legal, and social issues surrounding the application of the new genetic engineering
technologies. Basic areas of modern genetics will be covered, with an emphasis primarily on
humans. This is taken concurrently with a laboratory course.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Explaining the role of genes in human biology.
● Providing the basic concepts of molecular genetics.
● Introduction to population genetics.
● Illustrating how to analyze human pedigrees and how to perform gene mapping.
Course Content
(weekly plan)
Week 1: Syllabus presentation
Week 2: Introduction to human genetics
Week 3: Meiosis, development and aging
Week 4: Human inheritance
Week 5: Human inheritance continued
Week 6: Genetics of behavior
Week 7: Gene expression and epigenetics
Week 8: MID-TERM EXAM WEEK
Week 9: Genetic mutations
Week 10: Human chromosomes
Week 11: Introduction to population genetics
Week 12: Genetics of immunity
Week 13: Cancer genetics and genomics
Week 14: Genetic technologies
Week 15: Genetic testing and treatment
Week 16: FINAL EXAM WEEK
57
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: Introduction
Week 3, Lab 2: Human pedigree analysis
Week 4, Lab 3: Human pedigree analysis
Week 5, Lab 4: Genetic linkage and mapping
Week 6, Lab 5: Mitochondrial DNA isolation from hair (Chelex method)
Week 7, Lab 6: Restriction digestion of mtDNA from hair
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: DNA isolation from buccal swab (Chelex method)
Week 10 Lab 8: Polymerase chain reaction: Theoretical introduction
Week 11, Lab 9: PCR analysis of Rh factor inheritance in humans
Week 12, Lab 10: Agarose gel electrophoresis of PCR products
Week 13, Lab 11: Agarose gel of PCR products: Results interpretation
Week 14: Preparation for practical exam
Week 15: Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods Description (%)
Quiz 10 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 10 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Perform pedigree analysis
2. Clarify gene mapping
3. Interpret various human genetic tests
4. Perform DNA isolation
5. Illustrate the molecular mechanism of PCR and perform PCR
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature
Lewis, R. (2009). Human Genetics: Concepts and Applications, 9th ed. New York, NY, USA:
McGraw-Hill
Recommended Literature
Sudbery, P. & Sudbery, I. (2010). Human and Molecular Genetics, 3rd edition. New York, NY,
USA: Pearson Education Ltd
Pasternak, J.J. (2005). An Introduction to Human Molecular Genetics: Mechanisms of Inherited
Diseases, 2nded. Hoboken, NJ: John Wiley & Sons
Cummings, M.R (2014). Human Heredity, 10th ed. Belmont, USA: Brooks/Cole
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
58
Assignment / Homework / Project 1 16 16
Seminar / Presentation 1 16 16
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 325 Course Name: BIOMEDICAL SIGNALS AND SYSTEMS
Level: Undergraduate Year: III Semester: V ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course will introduce students to medical and biomedical engineering concepts. The focuses are on
how signal analysis can clarify the understanding of biomedical signal interpretation and diagnosis.
Topics include EEGs, ECGs, EMGs, respiratory and blood pressure (how they are generated and
measured), biosignals as random processes, spectral analysis, wavelets, time-frequency functions, and
signal processing for pattern recognition.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to the principles of biomedical signals and systems through ECG, EEG, EMG,
NIBP, IBP and respiratory examples.
● Explaining the importance of engineering in medicine.
● Giving an outline of characteristics of biomedical signals.
● Providing basic concepts about the human heart.
● Providing basic concepts about the respiratory system.
Course Content
(weekly plan)
Week 1: Summary and history of biomedical engineering
Week 2: Cell physiology, bio-potentials, membrane, and active potentials
Week 3: Bioelectrical phenomena, neurons, synaptic transmission
Week 4: Biomedical signals: ECG, EEG, EMG, EOG, respiratory signal, biomedical sensors,
biomedical signals processing
Week 5: Human heart, cardio-cycle, electrocardiogram, vectocardiogram, electrical field of the heart,
methods of ECG signal acquisition
Week 6: Methods for acquisition, processing and visualization of ECG signal, heart’s rhythm diagnostic
Week 7: ECG waveform and significant segments, ECG interpretation and diagnostics, pacemaker
WEEK 8: MID-TERM EXAM WEEK
Week 9: Respiratory signal, measurement, extraction from ECG, and measuring respiratory signals
Week 10: Blood pressure, invasive and non-invasive measurement methods, biosensors and transducers
Week 11: Methods for acquisition, processing and visualization of EEG signal
Week 12: Recording and interpretation of EEG, basic concepts and EEG phenomena
Week 13: Electrodes for bio-potential measurement, basic electrochemical processes in the cell and
tissues, aspects and methods of bioimpedance measurement
Week 14: Electrochemical sensors and dialysis: Chemical sensors, separation of the blood components
Week 15: Preparation for the final exam
WEEK 16: FINAL EXAM WEEK
LABORATORY CONTENT:
Week 1-11: The laboratory course is designed so that the students go through a series of virtual labs
and analyze the studied equipment: their modes of functioning, components, and therapeutic
importance in determining diagnosis.
Teaching Methods
Description
(list up to 4 methods)
● Interactive lectures and communication with students
● Discussions and group work
● Consultations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
59
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
(please write 5-8 outcomes)
On successful completion of this course, students should be able to:
1. Define biomedical system modeling
2. Assess different aspects and methods of applying engineering principles in medicine
3. Review characteristics of biomedical signals
4. Arrange principles of design and implementation of medical devices for physiological signal
processing
5. Interpret results of ECG and EEG signals
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature Raden, J.F. (2010). Handbook of Modern Sensors, Physics, Designs and Applications. New York, NY,
USA: Springer-Verlag
Recommended Literature
Enderle, J. & Bronzino, J. (2011). Introduction to Biomedical Engineering, 3rd ed. Burlington, MA,
USA: Elsevier Academic Press
Webster, J.G. & Eren, H. (2014). Measurement, Instrumentation, and Sensors Handbook, 2nd ed. Boca
Raton, FL, USA: CRC Press
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 14 14
Seminar / Presentation 18 18
Total Workload 125
ECTS Credit (Total Workload / 25) 5
60
SIXTH SEMESTER
Course Code: GBE 392 Course Name: GENETICS AND BIOENGINEERING PROJECT
Level: Undergraduate Year: III Semester: VI ECTS Credits: 5
Status: Mandatory Hours/Week: 0+4 Total Hours: 0+60
Course Description
This course requires each student to work on a short research project, effectively communicate
with their mentors, and apply genetics and bioengineering knowledge in their research work. At
the end of research project, each student should submit a hardcopy of the project and defend it with
poster presentation in front of a committee containing three juries.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Enabling students to combine theoretical and practical ability for preparation a genetic
engineering project and a presentation to the class.
● Providing material for students to document the research results with a proposal of a design project.
● Providing students with the experience of conceiving, designing, and implementing a
research project proposed.
● Preparing students to present the implemented project orally.
Course Content
(weekly plan)
● Announcement of project proposals by the Department
● Choosing any of proposed projects, or proposing student’s own project
● Announcement of the projects assigned to students
● Mentor-student communication
● Doing literature review and practical research (if applicable)
● Submitting all necessary administrative forms
● Finalizing MS Word version of GBE project
● Project defense in the form of poster presentation in front of jury members
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods Description (%)
Quiz 0 % Lab/Practical Exam 0 %
Homework 0 % Term Paper 0 %
Project 50 % Attendance 0 %
Midterm Exam 0 % Class Deliverables 0 %
Presentation 50 % Final Exam 0 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Actively participate in courses and begin to take responsibility for learning
2. Begin to work effectively as par to of a team, developing interpersonal, organizational,
and problem solving skills within a managed environment, exercising some personal
responsibility
3. Present information in oral, written or graphic forms in order to communicate
effectively with peers and tutors
4. Apply theory, techniques and relevant tools to the specification, analysis, design,
implementation and testing.
5. Evaluate theories, processes and outcomes within an ambiguous setting
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature N/A
Recommended Literature
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 4 60
61
Assignment / Homework / Project 1 40 40
Seminar / Presentation 1 20 25
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 304 Course Name: FORENSIC GENETICS
Level: Undergraduate Year: III Semester: VI ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
Forensic genetics is the application of science to law and it encompasses various scientific
disciplines. This course will introduce various methodologies and applications used in forensic
context, as well as the workflow characteristic for forensic investigations. Real forensic cases are
used to introduce technique and theory, to demonstrate how case solving requires an
interdisciplinary team approach, and to allow students to practice their analytical and logical
reasoning skills. Laboratory course is offered concurrently with lectures and is introducing
practical research in forensics (such as sample collection, presumptive evidence testing, and DNA
analysis and individualization), as well as statistical calculations necessary for presenting evidence
in the court.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to various disciplines and methodologies in forensic genetics.
● Teaching the roles of numerous scientific disciplines in crime investigations.
● Explaining the importance of analytical tools in forensic investigation.
● Explaining the importance of crime scene processing.
● Introduction to forensic anthropology and odontology.
62
● Describing how gender, mitochondrial, and Y-chromosomal DNA analyses are
performed.
Course Content
(weekly plan)
Week 1: Presentation of syllabus and course
Week 2: Introduction to forensic genetics: Basic principles and historical development, branches of
forensic genetics
Week 3: Basic genetic, medical, and biochemical principles of forensic DNA testing
Week 4: Evaluation of biological traces suitable for DNA analysis: Classification, collection, packaging,
labeling, and preservation
Week 5: Presumptive and confirmatory testing
Week 6: Application of molecular-genetic techniques in forensics (DNA extraction, amplification,
qualitative and quantitative characterization)
Week 7: Basic parameters and standards of a successful forensic genetics lab
Week 8: MID-TERM EXAM WEEK
Week 9: Lineage markers
Week 10: DNA identification of mass disaster victims
Week 11: Application of statistical, population, and medical studies in forensic genetics
Week 12: Disputed paternity and maternity testing
Week 13: Ethical, legal and, social aspects of DNA testing; Creation of national databases
Week 14: Application of DNA analysis results in legal and crime investigations; DNA testing
legislation
Week 15: Preparation for final exam
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: Types of evidence (DNA and non-DNA), fingerprint analysis
Week 3, Lab 2: Evidence collection, labeling, and packaging
Week 4, Lab 3: Crime scene (sample collection)
Week 5, Lab 4: Presumptive and confirmatory tests
Week 6, Lab 5: Kastle-Meyer test and starch-iodine radial diffusion test
Week 7, Lab 6: DNA analysis: DNA isolation (Qiagen)
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: DNA analysis: DNA quantification by spectrophotometry
Week 10 Lab 8: DNA analysis: RFLP, VNTR, individualization
Week 11, Lab 9: RFLP result interpretation
Week 12, Lab 10: Paternity testing, paternity index or combined paternity index, probability of paternity,
Random Man Not Excluded
Week 13, Lab 11: STR profiles
Week 14: Preparation for practical exam
Week 15: Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Apply all sorts of forensic and genetic analysis methods in processing human, animal
and plant biological trace samples
2. Operate forensic samples for forensic analysis
3. Assess the importance of forensic genetics in legal medicine and juridical procedures
4. Conduct DNA isolation
5. Categorize various sequencing methods
6. Explain STR profiling and the use of CODIS
63
7. Employ forensic statistics
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature
Houck, M.M. & Siegel, J. A. (2010). Fundamentals of Forensic Science, 2nd ed. Waltham, MA,
USA: Academic Press
Recommended Literature Butler, J. M. (2009). Fundamentals of DNA Typing, 1sted. Waltham, MA, USA: Academic Press
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 16 16
Seminar / Presentation 16 16
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 321 Course Name: INTELLIGENT SYSTEMS
Level: Undergraduate Year: III Semester: VI ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course will introduce students to the principles of fuzzy logic systems and artificial neural network
systems. The focuses are on using these methods for solving different problems in Bioengineering. Topic include neural networks architectures and fuzzy systems, learning algorithms and application, Matlab
software - Neural Network Toolbox and Fuzzy Logic Toolbox. Student will acquire knowledge various
neural network and fuzzy systems models. Student is also expected to work effectively as part of a team,
to develop interpersonal, organizational, and problem-solving skills within a managed environment and
to exercise some personal responsibility.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● To provide students with an understanding of the fundamental theory of neural networks, fuzzy
logic systems, eule-based systems and expert system development.
Course Content
(weekly plan)
Week 1: Introduction: Characteristics of ANN and Fuzzy Systems, Biological Neuron, Artificial Neuron,
Artificial Neural Networks
Week 2: Phases in ANN Operation, Network Classification
Week 3: Phases in ANN Operation, Network Classification
Week 4: Unsupervised Learning: Hebbian Learning, Competitive Learning & Boltzmann Learning
Week 5: Unsupervised Learning: Hebbian Learning, Competitive Learning & Boltzmann Learning
Week 6: Supervised Learning (Error-Correction learning) and Reinforcement Learning
Week 7: Supervised Learning (Error-Correction learning) and Reinforcement Learning
Week 8: MID-TERM EXAM WEEK
Week 9: Perceptrons and Multilayer Perceptrons
Week 10: Neural network Applications
64
Week 11: Neural network Applications
Week 12: Fuzzy Sets and Operations
Week 13: Fuzzy Representation of Structured Knowledge
Week 14: Fuzzy System application and Fuzzy sense in ANN
Week 15: Expert systems based on fuzzy logic and artificial neural network
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS
Week 1: Beginning of classes
Week 2, Lab 1: Introduction: Characteristics of ANN and Fuzzy Systems, Biological Neuron, Artificial Neuron,
Artificial Neural Networks
Week 3, Lab 2: Phases in ANN Operation, Network Classification
Week 4, Lab 3: Unsupervised Learning: Hebbian Learning, Competitive Learning & Boltzmann Learning
Week 5, Lab 4: Unsupervised Learning: Hebbian Learning, Competitive Learning & Boltzmann Learning
Week 6, Lab 5: Supervised Learning (Error-Correction learning) and Reinforcement Learning
Week 7, Lab 6: Supervised Learning (Error-Correction learning) and Reinforcement Learning
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: Perceptrons and Multilayer Perceptrons
Week 10 Lab 8: Neural network Applications
Week 11, Lab 9: Fuzzy Sets and Operations
Week 12, Lab 10: Fuzzy Representation of Structured Knowledge
Week 13, Lab 11: Fuzzy System application and Fuzzy sense in ANN
Week 14, Lab 12: Expert systems based on fuzzy logic and artificial neural network
Week 15: Exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
(list up to 4 methods)
● Interactive lectures and communication with students
● Discussions and group work
● Consultations
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
(please write 5-8 outcomes)
On successful completion of this course, students should be able to:
1. Designing and applying fuzzy logic system to solve engineering control problems where only
expert linguistic knowledge is available,
2. Designing and applying artificial neural network for solving problems,
3. Different aspects and methods of applying fuzzy logic system and artificial neural network in
Bioengineering,
4. The difference between the classical algorithmic way of solving the problems and the
corresponding learning procedures of artificial neural networks,
5. Technical possibilities, the advantages and the limitations of the fuzzy logic systems, artificial
neural network systems,
6. Usage of available software tools such as Matlab Neural Network Toolbox.
7. Developing Intelligent Expert Systems for solving complex problems in the Bioengineering
area.
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature
S. Kumar, “Neural Networks: A Classroom Approach,” McGraw Hill, 2005.
J.M. Mendel, “Uncertain Rule-Based Fuzzy Logic Systems”, Prentice-Hall, 2001
Timothy Ross, Fuzzy Logic with Engineering Applications, John Wiley & Sons Inc., 2010.
Sandhya Samarasingh, Neural Networks for Applied Sciences and Engineering: From
Fundamentals to Complex Pattern Recognition, Auerbach Publications, 2006
S. Haykin, “Neural Networks: A Comprehensive Foundation”, 2nd Ed, Prentice-Hall,1999
L. Fausett, “Fundamentals of Neural Networks: Architectures, Algorithms, and Application s”,
Prentice-Hall, 1994
65
Recommended Literature None
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 16 16
Seminar / Presentation 16 16
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 338 Course Name: IMMUNOLOGY AND IMMUNOGENETICS
Level: Undergraduate Year: III Semester: VI ECTS Credits: 5
Status: Mandatory Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course provides a broad survey of modern immunology, covering such topics as molecular concepts
of antigenic specificity, chemistry of antibodies and their interactions with antigens and cells, regulation
of the immune response, transplantation, autoimmunity, and tumor immunology. The course is taken
concurrently with a lab course, which is teaching students basic experimental concepts in immunology,
such as differential blood picture, counting blood cells, HLA typing, and hemoglobin analysis.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
✔ Providing a theoretical and applied perspective of classical and modern immunology.
✔ Teaching students basics of immunogenetics.
✔ Explaining HLA typization.
✔ Introducing basic Blood tests.
✔ Providing basic concepts of allergy.
✔ Explaining autoimmunity.
Course Contents
(weekly plan)
Week 1: Introduction to immunology. Innate immunity
Week 2: Properties and overview of immune responses
Week 3: Cells and tissues of immune system. Major histocompatibility complex molecules
Week 4: Leukocyte migration into tissues
Antigen processing and presentation to T lymphocytes. Antigen receptors and accessory molecules of
T lymphocytes
Week 5: Innate immunity
Week 6: Antibodies and antigens
Week 7: Scientific inquiry
Week 8: MID-TERM EXAM WEEK
Week 9: MHC
Week 10: Immune receptors and signal transduction
Week 11: Lymphocyte development and antigen receptor gene rearrangement
Week 12: Activation of T lymphocytes Transplantation immunology
Week 13: B Cell activation and antibody production
Week 14: Immunity to microbes & Immunity to tumors
Week 15: Autoimmunity & Hypersensitivity
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS
Week 1: Beginning of classes
Week 2, Lab 1: Introduction to lab course
Week 3, Lab 2: Blood smear
Week 4, Lab 3: Leukocyte count
Week 5, Lab 4: RBC count
66
Week 6, Lab 5: Determination of blood type, bleeding and clotting time
Week 7, Lab 6: Osmotic fragility
Week 8:MID-TERM EXAM WEEK
Week 9, Lab 7: Platelet count
Week 10 Lab 8: Separation of blood components
Week 11, Lab 9: Bacterial antigens
Week 12, Lab 10: Precipitation of blood proteins
Week 13, Lab 11: ELISA (virtual lab)
Week 14: Preparation for practical exam
Week 15: Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Prepare and interpret blood smears
2. Describe basic organs of the lymph system
3. Perform ABO, MN, Rh blood typing
4. Isolate blood proteins
5. Interpret blood lab results
6. Perform immunological detection of viruses and bacteria
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Abbas, A. K., Lichtman, A. H. H., & Pillai, S. (2011). Cellular and molecular immunology, 7th ed.
Philadelphia, PA, USA: Saunders
Recommended Literature Harvey R., Doan T., Melvold R., Viselli S., &Waltenbaugh, C. (2012). Immunology, 2nd ed.
Philadelphia, PA, USA: LWW
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 14 14
Seminar / Presentation 18 18
Total Workload 125
ECTS Credit (Total Workload / 25) 5
67
TECHNICAL ELECTIVE COURSES
Course Code: GBE 320 Course Name: SYSTEMS PHYSIOLOGY
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2+2 Total Hours: 30+30
Course Description
The course offers an overview of the functioning systems of the human body. The physiology of cells
as well as the muscular, nervous, circulatory, respiratory, endocrine, digestive, and urogenital systems
is explored. Emphasis is placed on the integration of the individual function of different cells and
organ systems into a functional whole, the feedback mechanisms that account for necessary balances,
and the consequences of disease. Examples of engineering approaches used to monitor physiological
processes and correct physiological deficiencies are included. The course is taken concurrently with
laboratory sessions, which are organized as either experiments or virtual labs.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to metabolic pathways commonly used by cells and explaining how enzymes
function in those pathways.
● Explaining how neurons communicate with each other and with other cells, such as muscles and glands.
● Providing basic concepts of blood and how it circulates in the body.
● Describing how the body defends itself against foreign invaders.
● Teaching the respiratory system function including breathing and gas exchange in the lungs
and body tissues.
● Explaining how the digestive system mechanically and chemically breaks food down for absorption.
● Giving an overview of urine formation and its hormonal control.
● Explaining the difference between reproductive processes that occur in males and those that occur in females.
Course Content
(weekly plan)
Week 1: Introduction to systems physiology
Week 2: Basis of cell physiology, Membranes and movement across the membrane
Week 3: Homeostasis: Mechanisms and signal transduction
Week 4: Endocrine system I
Week 5: Endocrine system II
Week 6: Reproductive system: From sex differentiation to adult reproduction
Week 7: Muscular system: Muscle contraction and the control of body movement
Week 8: MID-TERM EXAM WEEK
Week 9: Nervous system: Neural communication, mechanisms, and sensory systems
Week 10: Neurophysiology: sensory systems, vision, audition, vestibular system, olfaction, taste
Week 11: Respiratory system: System mechanics, gas transport and control of respiration
Week 12: Urinary system: Kidney, clearance, and the countercurrent mechanism
Week 13: Digestive system: Gastrointestinal motility, secretion, digestion, and absorption
Week 14: Cardiovascular system: Circulation and the design of cardiovascular system
Week 15: Immune system & Integumentary system
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS:
Week 1: Beginning of classes
Week 2, Lab 1 Introduction to System Physiology; Lab and Safety Rules
Week 3, Lab 2: Osmosis and difussion lab
Week 4, Lab 3: Experimental animals and animal dissection (Salmo truta)
Week 5, Lab 4: Endocrine system - Virtual lab
Week 6, Lab 5: Male and female reproductive system – Virtual lab
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Week 7, Lab 6: Muscular system - Virtual lab
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: Nervous system – virtual lab
Week 10, Lab 7: Respiratory system – virtual lab and the use of spirometers
Week 11 Lab 8: Urinary system: Urine analysis
Week 12, Lab 9: Digestive system – virtual lab
Week 13, Lab 10: Cardiovascular system – virtual lab
Week 14, Preparation for practical exam
Week 15, Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
On successful completion of this course, students should be able to:
6. Recall the basics of physiology of different organ systems
7. Identify the structure and function of various systems
8. Interpret and criticize the concept of experimental animals
9. Design and set up animal experiments in a bioethical manner
10. Operate animal dissection safely and efficiently
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Linda S. Constanzo (2014), Physiology, Fifth edition, Saunders, Elsevier
Recommended Literature Fox, S. I. (2008). Human physiology, 10th ed. New York City, NY, USA: McGraw Hill
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 16 16
Seminar / Presentation 16 16
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 322 Course Name: PRINCIPLES OF NEUROBIOLOGY
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
69
Status: Elective Hours/Week: 2+2 Total Hours: 30+30
Course Description
The course is designed to provide a foundation needed for the eventual understanding of the neural basis
of behavior and cognition. This course will consider data and theories of brain-behavior relationships
from research in the neurosciences. Progress in neuroscience requires a detailed knowledge of brain
function and so cuts across areas such as neurophysiology, neuroanatomy, and neurochemistry. In the
first part of the course, a reductionistic approach will be taken and focus will be put on the basic element
of nervous systems, the neuron. The objective is to understand the signaling capacities of neurons in
terms of cellular mechanisms. In the second part of the course, a more integrative approach will be taken
and students will understand how simple sensory, motor, and learning capacities arise from the
operations of neural networks. Hormonal and neural elements interaction in producing motivation and
emotions will also be discussed.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Giving an outline of the fundamentals of neurobiology.
● Explaining basic operating principles of neural tissue.
● Teaching the molecular basis of neurobiology.
● Enabling progress to more advanced courses.
Course Content
(weekly plan)
Week 1: Introduction/Overview
Week 2: Ion channels and signaling and structure
Week 3: Resting and action membrane potential
Week 4: Passive membrane properties
Week 5: Synaptic transmission
Week 6: Molecular biology of presynaptic nerve terminals
Week 7: Indirect mechanisms of synaptic transmission
Week 8: MID-TERM EXAM WEEK
Week 9: Mechanosensation
Week 10: Dendrites: Morphology and function
Week 11: Electrical synapses
Week 12: Synaptic plasticity
Week 13: Neural basis of behavior
Week 14: Intrinsic plasticity
Week 15: Cellular mechanisms of learning; Neurodegenerative diseases
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS:
Week 1: Beginning of classes
Week 2, Lab 1: Visualizing the nervous system (worm dissection)
Week 3, Lab 2: Immunocytochemistry of brain sections
Week 4, Lab 3: Exploring the brain: Allen Brain Atlas data portal
Week 5, Lab 4: Exploring brain connectivity: Allen Brain Atlas data portal
Week 6, Lab 5: Human benchmark laboratory (reaction time and memory)
Week 7, Lab 6: Exploratorium: Virtual sheep brain dissections
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: Virtual deep brain stimulation surgery
Week 10 Lab 8: Virtual neuroscience lab: Medication study
Week 11, Lab 9: Virtual neuroscience lab: Parkinson's disease study
Week 12, Lab 10: Howard Hughes Medical Institute: Neurophysiology surgery
Week 13, Lab 11: Neuroscience project ideas
Week 14: Preparation for practical exam
Week 15: Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
(list up to 4 methods)
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40%
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Total 100 %
Learning Outcomes
(please write 5-8 outcomes)
On successful completion of this course, students should be able to:
1. Recall neurobiology terminology
2. Explain the brain and nervous system
3. Relate the brain and nervous system to behavior and disease
4. Assess the importance of molecular biology in neurological processes
5. Predict the effect of neurological processes on behavior
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Kandel, E., Schwartz, J., & Jessell, T. (2000) Principles of Neural Science, 4th ed. New York City, NY,
USA: McGraw Hill Medical
Recommended Literature Liquin, L. (2015). Principles of Neurobiology, 1st ed. New York City, NY, USA: Garland Science
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 14 14
Seminar / Presentation 18 18
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 324 Course Name: BIOMATERIALS
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course is designed to introduce students to the various classes of biomaterials in use and their
application in selected subspecialties of medicine including an understanding of material bulk and
surface properties, standard characterization tools, the various biological responses to implanted
materials, the clinical context of their use, manufacturing processes, and issues dealing with cost,
sterilization, packaging, and design of biomedical devices. It also addresses professional and ethical
responsibility encountered in designing medical implants.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to the importance of the use of biomaterials and new technologies.
● Giving and outline of applications of biomaterials in medicine.
● Explaining terms used in the literature of biomaterials.
● Teaching the basic characteristics of specific biomaterials.
● Illustrating the processes and phenomena related to the application of biomaterials.
71
Course Content
(weekly plan)
Week 1: Introduction to the course
Week 2: Classes of Biomaterials
Week 3: Classes of Biomaterials
Week 4: Applications of biomaterials I
Week 5: Cells and tissues
Week 6: Host reaction to biomaterials
Week 7: Applications of biomaterials II
Week 8: MID-TERM EXAM WEEK
Week 9: Testing of biomaterials
Week 10: WORKSHOP: Analysis of Scientific papers, Nanoparticles as drug delivery systems
Week 11: Applications of biomaterials III
Week 12: WORKSHOP: Analysis of Scientific paper, Detection of microorganisms by nanoparticles
Week 13: Biosensors
Week 14: Workshop: Analysis of Scientific Papers, Biofilms
Week 15: Applications of biomaterials IV
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT:
Week 1-11: The laboratory course is designed so that the students learn about biomaterials through
virtual labs. In these sessions, students will get familiar with physical and chemical properties of
biomaterials, ways to practically apply them, and their interactions with living systems, that is, cells.
Also, students will analyze scientific articles that are utilizing modern techniques in biomaterial
processing and application.
Teaching Methods
Description
(list up to 4 methods)
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0%
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
(please write 5-8 outcomes)
On successful completion of this course, students should be able to:
✔ Recognize most of the terms used in the literature of biomaterials
✔ Collect basic knowledge of materials that can have biomedical application
✔ Discriminate chemical and physical structure of biomaterials
✔ Break down mechanical properties and processing of biomaterials
✔ Illustrate protein and cell interactions with biomaterials
Prerequisite Course(s)
(if any) None
Language of Instruction English
Mandatory Literature Temenoff, J. S. & Mikos, A. G. (2009). Biomaterials: The Intersection of Biology and Materials.
International Edition. New York City, NY, USA: Pearson
Recommended Literature Park J. & Bronzino J. (2002). Biomaterials: Principles and Applications, 1st ed. Boca Raton, FL, USA:
CRC Press
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
72
Assignment / Homework / Project 14 14
Seminar / Presentation 18 18
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 326 Course Name: CYTOGENETICS
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2+2 Total Hours: 30+30
Course Description
This lecture and laboratory course will focus on human chromosome structure and replication,
methodology, form and function, identification and techniques for the visualization of chromosome
aberrations. The latter part of the semester focuses on evolution and speciation, sex chromosome
systems, artificial manipulation of genomes as well as the human karyotype. Chromosome abnormalities
will be discussed from the clinical and cytogenetic viewpoint. The course will also cover current topics
in cytogenetics, including new methodologies and their use in clinical genetics and research. Laboratory
course covers both experimental techniques in cytogenetics, as well as detailed study of human
chromosomes through virtual labs and recitations.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to chromosomes, their structure and function.
● Introduction to the cell cycle.
● Preparation of chromosomes for observations.
● Explaining mutations and aberrations.
● Explaining human karyotype.
Course Contents
(weekly plan)
Week 1: Syllabus presentation
Week 2: DNA, Chromosomes, and Cell Division
Week 3: Human Chromosome Nomenclature: An Overview and Definition of Terms
Week 4: Autosomal Aneuploidy
Week 5: Structural Chromosome Rearrangements
Week 6: Sex Chromosomes, Sex Chromosome Disorders, and Disorders of Sex Development
Week 7: The Cytogenetics of Infertility
Week 8: MID-TERM EXAM WEEK
73
Week 9: Prenatal Cytogenetics
Week 10: Chromosome Instability
Week 11: The Cytogenetics of Hematologic Neoplasms
Week 12: The Cytogenetics of Solid Tumors
Week 13: Fluorescence in Situ Hybridization (FISH)
Week 14: Microarray-Based Cytogenetics
Week 15: Genomic Imprinting and Uniparental Disomy
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS
Week 1: Beginning of classes
Week 2, Lab 1: Basic Cytogenetics Laboratory Procedures and Instrumentation
Week 3, Lab 2: Cell Cycle: Interphase, mitosis, and meiosis
Week 4, Lab 3: Techniques of making chromosome slides
Week 5, Lab 4: Chromosome staining techniques, part 1
Week 6, Lab 5: Chromosome staining techniques, part 2
Week 7, Lab 6: Getting and marking cells in prophase or prometaphase
Week 8:MID-TERM EXAM WEEK
Week 9, Lab 7: Study of sex chromatin
Week 10 Lab 8: Microscopic observations and microphotography
Week 11, Lab 9: Nomenclature and chromosome classification
Week 12, Lab 10: Preparing a karyotype
Week 13, Lab 11: Common chromosomal abnormalities
Week 14: Preparation for practical exam
Week 15: Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 10 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 10 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Analyze the human karyotype
2. Describe the cell cycle
3. Classify chromosomal banding and its application
4. Determine structural and numerical chromosomal aberrations
5. Explain the nomenclature of chromosomes
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Steven L. Gersen, Martha B. Keagle, Editors The Principles of Clinical Cytogenetics, Third edition
(2013), Springer
Recommended Literature Tirunilai, P. (2012). Recent trends in cytogenetic studies, 1st ed. Rijeka, Croatia: InTech
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
74
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 14 14
Seminar / Presentation 18 18
Total Workload 125
ECTS Credit (Total Workload / 25) 5
75
Course Code: GBE 327 Course Name: GENERAL BIOTECHNOLOGY AND BIOSAFETY
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2+2 Total Hours: 30+30
Course Description
The course deals with the major elements of the global significance of biotechnology, the categories of
biotechnology processes and products, and in the context of "traditional" vs. "modern" biotechnology
processes. Also, the key developments in the history of biotechnology and the enabling technologies -
fermentation, downstream processing; recombinant methods, antibody monoclonals, analysis and
automation, genomics, proteomics, metabolomics. Specific aspects of the biotechnology enterprises are
highlighted and then the broader issues dealing with biotechnology and society; considerations in the
genesis of the typical biotechnology process/product/enterprise: development costs, venture capital,
patenting, product safety, legislation and marketing. Case studies on the interdisciplinary nature of
biotechnology and factors favoring local/regional development of a biotechnology industry will also be
included. We will explore a plethora of technologies used in the fields of genetic engineering, forensics,
agriculture, bioremediation and medicine in order to give you a basic but fundamental experimental skill
set which can be applied in future secondary and post-secondary laboratory experiences or real-world
scenarios.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to basic principles in biotechnology.
● Designing a gene cloning and fermentation experiment.
● Discussing scientific papers on the field.
● Designing and controlling an industrial biotechnological process.
Course Contents
(weekly plan)
Week 1: Syllabus presentation
Week 2: Recombinant DNA technology
Week 3: Microbial biotechnology
Week 4: Plant biotechnology
Week 5: Bioremediation
Week 6: Animal biotechnology
Week 7: Marine biotechnology
Week 8: MID-TERM EXAM WEEK
Week 9: Medical biotechnology
Week 10: Biotechnology regulations
Week 11: Ethics in biotechnology
Week 12: Standard methods in molecular biotechnology: Proteins
Week 13: Standard methods in molecular biotechnology: Nucleic acids
Week 14: Use of enzymes in the modification of nucleic acids
Week 15: Other standard methods in molecular biotechnology
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS
Week 1: Beginning of classes and presentation of seminar assignments
Week 2 – Week 7: Student presentations
Week 8: MID-TERM EXAM WEEK
Week 9 – 14: Student presentations
Week 15: Exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 10 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 10 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
76
Learning Outcomes
After completion of this course, students should be able to:
1. Recall the basic concepts of biotechnology and main definitions
2. Apply knowledge of microbial fermentation in industry
3. Identify bioreactors and illustrate their mode of operation
4. Collect knowledge about basic concepts and methods used in plant biotechnology and demonstrate
their practical application
5. Demonstrate sterile techniques required to conduct plant tissue culture
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature
Thieman, W. J. & Palladino, M. A. (2012). Introduction to Biotechnology, 3rd ed. San Francisco, CA,
USA: Benjamin Cummings
Handouts will be compiled and available for purchase in Profi Copy
Recommended Literature Scientific articles delivered during classes and lab sessions
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 14 14
Seminar / Presentation 18 18
Total Workload 125
ECTS Credit (Total Workload / 25) 5
77
Course Code: GBE 328 Course Name: INTRODUCTION TO RESEARCH METHODS
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course provides an introduction to research methods and designs relevant to biotechnology,
genetics, and bioengineering fields. The course will focus on an introduction to various research designs
including experimental and non-experimental, as well as quantitative and qualitative research methods.
The emphasis will be on academic writing and publishing, ethical considerations and safety. Finally,
students are introduced to different types of scientific articles in genetics and bioengineering and are
discussing them in the form of presentation in front of the class, as well as preparation of their own
article-style paper and presenting it in front of the class.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to the scientific method and its role/importance in biotechnology, genetics and bioengineering.
● Sharing the process of research and components within the process.
● Providing an outline of the importance of research questions.
● Providing an outline of the importance of conducting a review of the literature as part of the
empirical process.
● Introducing students to research tools and search engines that support conducting a literature review.
● Getting deep understanding of academic writing and publishing.
Course Contents
(weekly plan)
Week 1: Introduction to research
Week 2: Experimental design and analysis
Week 3: Communicating scientific information
Week 4: Types of scientific articles
Week 5: Scientific publishing
Week 6: Research ethics
Week 7: Scientific misconduct
Week 8: MID-TERM EXAM WEEK
Week 9: Writing assignment, introduction
Week 10: Paper presentations
Week 11: Paper presentations
Week 12: Consultations
Week 13: Consultations
Week 14: Presentations of writing assignment
Week 15: Presentations of writing assignment
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS
Weeks 2-15: The laboratory course is designed so that the students get more in-depth explanation of
scientific research and publishing, especially as related to scientific misconduct, proper scientific
referencing and understanding research articles. Laboratory course will be based on reading and
analyzing chosen articles from relevant fields.
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Practice exercises
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 30 % Class Deliverables 0 %
Presentation 20 % Final Exam 30 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Develop a scientific way of reasoning 2. Use various databases necessary for the bioengineering profession 3. Handle different research designs 4. Differentiate the types of academic papers
78
5. Recall the concepts of ethics, plagiarism and scientific misconduct
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Marder, P.M. (2011). Research Methods for Science. Cambridge, UK: Cambridge University Press
Recommended Literature Lecture notes
Scientific articles
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (14 weeks x Lecture hours per week) 14 2 28
Laboratory / Practice (13 weeks x Laboratory / Practice hours per week) 13 2 26
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 20 20
Preparation for Final Examination 1 20 20
Assignment / Homework / Project 10 10
Seminar / Presentation 15 15
Total Workload 123
ECTS Credit (Total Workload / 25) 5
79
Course Code: GBE 329 Course Name: POPULATION GENETICS
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course is designed to provide students with a general introduction to population genetics, which
examines the interaction of basic microevolutionary and other related processes (including mutation,
natural selection, genetic drift, inbreeding, recombination, and gene flow) in determining the genetic
composition and evolutionary trajectories of natural populations. Methods of measuring genetic
variation in natural populations will also be reviewed and experimental tests of the central concepts
derived from population genetics theory will be examined. Empirical examples will involve a broad
diversity of organisms, including humans.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Teaching students the principles of Hardy-Weinberg equilibrium.
● Explaining factors that can affect Hardy-Weinberg equilibrium, such as mutation, natural selection, inbreeding, migration, and genetic drift.
● Giving an overview of phylogenetic analyses, their possibilities and limitations, as well as
practical applications.
● Explaining the history of modern humans and basic concepts about the biological, bio-cultural and socio-cultural characteristics of various human groups and their interpopulation variability
as an adaptation response to the impact of environmental factors.
● Giving an overview of quantitative genetics in the context of different populations.
Course Contents
(weekly plan)
Week 1: Background in population genetics
Week 2: Allele and genotype frequencies; Hardy-Weinberg equilibrium and extensions of the principle,
part I
Week 3: Allele and genotype frequencies; Hardy-Weinberg equilibrium and extensions of the principle,
part II
Week 4: Inbreeding
Week 5: Sources of genetic variation (mutation, recombination, transposable elements)
Week 6: Genetic drift
Week 7: Gene flow
Week 8: MID-TERM EXAM WEEK
Week 9: Natural selection as the driving evolutionary force
Week 10: Case studies of natural selection in human populations
Week 11: Human population structure and history
Week 12: Quantitative genetics and heritability, part I
Week 13: Quantitative genetics and heritability, part II
Week 14: Phylogenetics and speciation
Week 15: Population growth and doubling; Carrying capacity
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS
Week 1, Beginning of classes
Week 2, Lab 1: Basic statistical models for population genetics
Week 3, Lab 2: Allele and genotype frequencies; Hardy-Weinberg equilibrium
Week 4, Lab 3: Trait inheritance and genetic counseling using HWE
Week 5, Lab 4: Inbreeding
Week 6, Lab 5: Mutation as a source of genetic variation
Week 7, Lab 6: Recombination as a source of genetic variation; Gene mapping
Week 8: MIDTERM WEEK
Week 9, Lab 7: Genetic drift
Week 10, Lab 8: Gene flow and FST value
Week 11, Lab 9: Natural selection
Week 12, Lab 10: Population genetics of quantitative traits
Week 13, Lab 11: Analysis of sample articles from the field
Week 14: Preparation for laboratory test
Week 15: Lab test
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Mathematical problems
● Sample paper analysis
Quiz 20 % Lab/Practical Exam 20 %
80
Assessment Methods
Description (%)
Homework 0 % Term Paper 0 %
Project 0 % Attendance 0 %
Midterm Exam 25 % Class Deliverables 0 %
Presentation 0 % Final Exam 35 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Explain the basics of population genetics
2. Calculate the Hardy-Weinberg equilibrium
3. Find the frequency of alleles and genotypes in a population
4. Define microevolutionary driving forces in population genetics
5. Recall basics of phylogenetics
6. Discuss heritability
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Relethford, J.H. (2012). Human Population Genetics. Hoboken, NJ: John Wiley & Sons, Inc
Recommended Literature
Hartl, D.L. & Clark, A.G. (1997). Principles of Population Genetics, 3rd ed. Sunderland, MA: Sinauer
Associates, Inc
Scientific papers
Tutorial handouts
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (14 weeks x Lecture hours per week) 14 2 28
Laboratory / Practice (13 weeks x Laboratory / Practice hours per week) 13 2 26
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 20 20
Preparation for Final Examination 1 30 30
Assignment / Homework / Project 15 15
Seminar / Presentation 0 0
Total Workload 123
ECTS Credit (Total Workload / 25) 5
81
Course Code: GBE 331 Course Name: ENVIRONMENTAL BIOLOGY
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2 + 2 Total Hours: 30 + 30
Course Description
Environmental biology is dealing with the relationships of living things with themselves and their
environments, which are topics covered during this course. Both landscape and marine ecology are briefly
presented to the students during the course. Special emphasis is put on population and community ecology
as a way of showing the effect of human activity on environment. At the end of semester, students are
analyzing ecology-related scientific articles in order to get along with the most recent discoveries in the
field. The course is taken concurrently with the lab course, which combines theoretical and in-field classes.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to environmental biology, ecosystems, energy and ecological systems.
● Explaining biogeochemical cycles, limiting and regulatory factors.
● Providing basic concepts of population ecology, community ecology and ecosystem development.
● Giving an overview of landscape ecology, regional ecology and global ecology.
Course Content
(weekly plan)
Week 1: Introduction
Week 2: Scope of ecology
Week 3: Ecosystems
Week 4: Energy and ecological systems
Week 5: Biogeochemical cycles
Week 6: Limiting and regulatory factors
Week 7: Population and community ecology
Week 8: MID-TERM EXAM WEEK
Week 9: Ecosystem development
Week 10: Landscape ecology
Week 11: Marine ecology
Week 12: Regional ecology
Week 13: Biomes
Week 14: Global ecology
Week 15: Student presentations: Analysis of scientific articles on current ecology-related topics
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS
Week 1-11: The laboratory course is designed so that the students study various aspects of environmental biology
and the harmful effect of humans on the environment. The second part of the course is designed so that
students go to visit various ecosystems, collect samples from these ecosystems, and analyze them.
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Define the scope of ecology
2. Enlist and discuss the concepts of ecosystems
3. Interpret the energy in ecosystem
4. Analyze the biogeochemical cycles
5. Distinguish and relate the limiting and regulatory factors in an ecosystem
6. Enlist and describe the different disciplines of ecology including population ecology, community
ecology, ecosystem development, landscape ecology, regional ecology and global ecology
7. Appraise environmental awareness
8. Propose environmental problems and design solution approaches
Prerequisite Course(s)
(if any)
None.
82
Language of Instruction English
Mandatory Literature Odum, E. & Barrett, G. W. (2004). Fundamentals of Ecology, 5th ed. Boston, MA, USA: Cengage Learning
Recommended Literature Verma, P.S. & Agarwal, V.K. (2000). Environmental Biology, 2nd ed. New Delhi, India: S Chand & Co
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 1 18 18
Seminar / Presentation 1 14 14
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 332 Course Name: PLANT STRESS PHYSIOLOGY
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2+2 Total Hours: 30 + 30
Course Description
Any factors that have an impact on external and internal homeostasis of living beings are described as
stresses. Plants have many defense systems to avoid negative effects of biotic and/or abiotic stress
factors. This course is giving an overview of plant physiology and changes that happen in response to
different stresses, such as drought, heat, chilling and freezing, oxygen deficiency, biotic stresses, etc.
The final lectures in this course are discussing changes in signal transduction as a response to stress, as
well as biotechnological impacts of plant stresses.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Familiarizing students with plant stress physiology.
● Teaching techniques to improve productivity of plants by using some biotechnological
methods.
● Introduction to stress and signal transduction.
83
Course Contents
(weekly plan)
Week 1: Introduction to plant physiology
Week 2: Introduction to stress physiology
Week 3: Ecosystems
Week 4: Biotic and abiotic stresses
Week 5: Water deficit and drought stress and tolerance
Week 6: Heat stress and heat shock
Week 7: Chilling and freezing
Week 8: MID-TERM EXAM WEEK
Week 9: Salinity stress
Week 10: Oxygen deficiency
Week 11: Radiation
Week 12: Biotic stresses
Week 13: Secondary stresses
Week 14: Stress and signal transduction
Week 15: Stress and biotechnology
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS
Week 1-11: The laboratory course will be designed so that in the first part students cultivate their test plants.
Through the following weeks, students will expose the plants to different biotic and abiotic stress factors
and record the results.
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Recall the concept of plant physiology
2. Explain the concept of the stress
3. Interpret the sensation of stress (signal transduction)
4. Compare biotic stress and abiotic stress
5. Integrate tolerance mechanisms in biotechnology
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Taiz, L. & Zeiger, E. (2010). Plant Physiology, 5th ed. Sunderland, UK: Sinauer Associates Inc
Recommended Literature Hale, M. G. & Orcutt, D. M. (2000). The physiology of plants under stress, 2nd. Hoboken, NJ, USA:
John Wiley & Sons
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 18 18
84
Seminar / Presentation 14 14
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 333 Course Name: PLANT PHYSIOLOGY AND TISSUE CULTURE
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2 + 2 Total Hours: 30 + 30
Course Description
This course is giving an introduction to the basic physical and physiological properties of a plant body.
Also, fundamentals of plant metabolism, such as water movement, photosynthesis, respiration, and
transpiration, are discussed. This course is mainly focused on contemporary aspects of plant physiology
with an emphasis on recent research. Lab course, which is taken concurrently with lectures, is explaining
plant morphology and metabolism through practical exercises. Both lectures and lab course are ending
with selected topics in plant tissue culture.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to the basic plant structure.
● Introduction to plant physiology.
● Explaining molecular mechanisms underlying plant physiological processes.
● Covering molecular basis of respiration and photosynthesis.
● Discussing main processes important for the normal functioning of plants.
Course Content
(weekly plan)
Week 1: Introduction to plant physiology and plants as model organisms
Week 2: Introduction to plant cell, tissue and organ morphology, and physiology
Week 3: Fundamentals of plant tissue
Week 4: Plant nucleic acids, gene expression, and signal transduction
Week 5: Water transport and water balance in plants
Week 6: Mineral nutrition
Week 7: Basics of plant development
Week 8: MID-TERM EXAM WEEK
Week 9: Photosynthesis: Light reactions
Week 10: Photosynthesis: Carbon reactions
Week 11: Environmental regulation of photosynthesis
Week 12: Respiration
Week 13: Lipid metabolism
Week 14: Fundamentals of plant tissue culture
Week 15: Methodologies used in plant tissue culture
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: Introduction to lab course
Week 3, Lab 2: The plant cell: Microscopy of different plant parts (plant cell – Allium cepa organelles,
Aspidistra sp. – chloroplasts, Cucurbita pepo – elements of the vascular system, Helleborus odorus –
leaf, stoma)
Week 4, Lab 3: Physiology of the cell: Osmosis
Week 5, Lab 4: Plasmolysis and deplasmolysis
Week 6, Lab 5: Water transport in plants
Week 7, Lab 6: Transpiraton and respiration
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: Photosynthesis
Week 10 Lab 8: Enzymes
Week 11, Lab 9: Physiology of plant growth
Week 12, Lab 10: Plant tissue culture: Growing the plants
Week 13, Lab 11: Plant tissue culture: Hormones and media
Week 14: Preparation for practical exam
Week 15: Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
85
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Illustrate the basics of plant anatomy necessary to understand plant physiology
2. Describe molecular mechanisms of photosynthesis
3. Demonstrate the basics of biochemical cycles that take place in a plant cell
4. Break down molecular mechanisms of respiration
5. Perform plant tissue culture
Prerequisite Course(s)
(if any)
None.
Language of Instruction English
Mandatory Literature Taiz, L. & Zeiger, E. (2010). Plant physiology, 5th ed. Sunderland, UK: Sinauer Associates, Inc.
Recommended Literature Pandey, S.N., Sinha, B.K. (2005). Plant physiology, 4th ed. New Delhi, India: Vikas
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 1 18 18
Seminar / Presentation 1 14 14
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 334 Course Name: ANALYTICAL CHEMISTRY
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2 + 2 Total Hours: 30 + 30
Course Description
This course will address the basic topics in analytical chemistry, such as those related to gravimetric and
potentiometric techniques, electrochemistry, as well as precipitation and titration reactions. The second
part of the course covers instrumental methods of analysis, like atomic absorption, fluorescence-based
techniques, UV/vis, IR, NMR, HPLC, GC, and LCMS. The laboratory component of the course stresses
both quantitative and qualitative analyses. The first part of the practical lab course mainly revolves
around titration reactions, while the second part of the course teaches students how to apply analytical
chemistry principles in food industry and pharmacy.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Providing good understanding of the chemical principles that underpin chemical reactions.
● Explaining titration curves.
● Illustrating steps required to conduct analysis.
● Introduction to potentiometric methods.
86
Course Content
(weekly plan)
Week 1: Introduction to the course
Week 2: Types of quantitative and qualitative analysis. Steps involved in performing analysis
Week 3: Gravimetric techniques, theory of precipitation, gravimetric factors
Week 4: Introduction to titrimetric analysis, aqueous solution chemistry
Week 5: Titration curves for simple acid/base systems
Week 6: Complex or polyprotic acid-base titrations
Week 7: Precipitation titrations
Week 8: MID-TERM EXAM WEEK
Week 9: Introduction to electrochemistry and redox reactions
Week 10: Potentiometric methods, redox titrations
Week 11: Introduction to spectroscopy: Electromagnetic spectrum, atomic absorption spectroscopy
Week 12: Ultraviolet-visible spectroscopy, fluorescence
Week 13: Nuclear magnetic resonance, infrared spectroscopy, mass spectrometry
Week 14: Affinity separations: Centrifugation, crystallization, extraction, electrophoresis
Week 15: Gas and liquid chromatography
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: Introduction to analytical chemistry lab
Week 3, Lab 2: Hydrogen ions, pH, and indicators
Week 4, Lab 3: Strong acid vs. strong base and strong acid vs. weak base titration curves using an indicator color
reference and pH meter
Week 5, Lab 4: Weak acid vs. strong base and weak acid vs. weak base titration curves using an indicator
color reference and pH meter
Week 6, Lab 5: Acid-base titration: Analysis of acid solutions of unknown concentrations
Week 7, Lab 6: Reactions of metal ions
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: The formula of a precipitated compound
Week 10 Lab 8: Quantitative analysis of vitamin C contained in foods
Week 11, Lab 9: Water analysis
Week 12, Lab 10: Measurement of the active ingredient in aspirin pills
Week 13, Lab 11: Chemical properties of consumer products
Week 14, Lab 12: Preparation for practical exam
Week 15: Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Describe the differences between quantitative and qualitative analysis
2. Interpret electrochemistry and redox reactions
3. Analyze and differentiate potentiometric methods
4. Operate the range of instrumentation specified in the module safely and efficiently in the
chemistry laboratory
5. Design and perform titrations accurately and safely in the laboratory
Prerequisite Course(s)
(if any)
None.
Language of Instruction English
Mandatory Literature Skoog, D. A., West, D. M., Holler, F. J., & Crouch, S. R. (2003). Fundamentals of Analytical
Chemistry, 8th ed. Boston, MA, USA: Cengage Learning
87
Recommended Literature Christian, G.D. (2003). Analytical Chemistry, 6th ed. Hoboken, NJ, USA: John Wiley & Sons
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 1 14 14
Seminar / Presentation 1 18 18
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 335 Course Name: GENOMICS AND PROTEOMICS
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2 + 2 Total Hours: 30 + 30
Course Description
This course is organized as an integrated presentation of genome organization, genome sequencing and
characterization, comparative genomics, and introductory genomic data analysis. It also covers specific
applications of genomics in a modern-day industry, in order to give the students an idea about the
practical importance of genomics. This course will also cover fundamentals of analytical tools used for
protein characterization, some of them being mass spectrometry, SDS-PAGE, and protein sequencing.
Additionally, bioinformatics-based approach is discussed on several occasions in order to make students familiar with in silico protein analysis and structure prediction. Lab course is offered and is mostly
dealing with bioinformatics tools for gene, transcriptome, and protein analysis.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to the structure, organization, function and evolution of the genome.
● Familiarizing students with the functioning of the genome.
● Genome sequencing.
● Introduction to protein and proteomics analysis.
● Explaining the interactions between genomes and proteins, proteomics methods and procedures
as well as software tools.
● Teaching about the role of proteomics in the analysis of gene/protein expression, the difference in expression profiles in tissues as well as identification of proteins whose expression has been
altered as a result of various active processes.
● Providing basic principles of current proteome analysis and characterization methods as well
as their use in biomedical research in protein identification.
Course Content
(weekly plan)
Week 1: Classical DNA sequencing methods: Maxam-Gilbert and Sanger; NGS (next-generation
sequencing)
Week 2: Gene expression analysis techniques
Week 3: Protein analysis and proteomics
Week 4: Protein structure
Week 5: Functional and comparative genomics
Week 6: The eukaryotic chromosome, part I
Week 7: The eukaryotic chromosome, part II
Week 8: MID-TERM EXAM WEEK
Week 9: Genomes across the tree of life
Week 10: Viral genomes
Week 11: Bacterial and archaeal genomes
Week 12: Eukaryotic genomes (fungi)
Week 13: Eukaryotic genomes (from parasites to primates)
Week 14: Human genome
88
Week 15: Human disease
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1: Beginning of classes
Week 2, Lab 1: NGS applications: Metagenomics (computer project)
Week 3, Lab 2: NGS applications: RNA-Seq (computer project)
Week 4, Lab 3: Prediction of protein 2D and 3D structure (in silico work)
Week 5, Lab 4: Protein-protein interaction networks (in silico work)
Week 6, Lab 5: KEGG database (in silico work)
Week 7, Lab 6: Comparative genomics (in silico work), part I
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: Comparative genomics (in silico work), part II
Week 10 Lab 8: Natural selection analysis (computer project)
Week 11, Lab 9: Epigenomics and pharmacogenomics (paper discussion)
Week 12, Lab 10: OMIM database (in silico work)
Week 13, Lab 11: Recap
Week 14, Lab 12: Preparation for practical exam
Week 15: Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 25 % Class Deliverables 0 %
Presentation 0 % Final Exam 35 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Develop an understanding of the significant role and essence of genome analysis 2. Describe protein structure and function 3. Compare interactions between proteomes and genomes and various external factors 4. Identify the role that genomics and proteomics play in gene/protein expression analysis
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Pevsner, J. (2015). Bioinformatics and Functional Genomics, 3rd ed. Hoboken, NJ: John Wiley & Sons
Recommended Literature Database information
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 1 18 18
Seminar / Presentation 1 14 14
Total Workload 125
89
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 337 Course Name: BIOMECHANICS
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2 + 2 Total Hours: 30 + 30
Course Description
This course is combining basics of mechanics with classical topics in biomechanics. The first half of the
semester is offering topics such as movement, force, energy, and work, Newton’s laws, and pendulum.
The second part of the course (after the mid-term exam) is dealing with the application of principles of
mechanics as they refer to the movement of human body. Body systems are discussed from this point of
view, followed by mechanics of upper and lower extremities. This course is taken concurrently with a
lab course.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to the mechanics of rigid bodies and its application to biological systems.
● Explaining physical parameters in mechanics.
● Introduction to biomechanics of biological bodies.
● Giving an outline of new technologies in biomechanics.
Course Content
(weekly plan)
Week 1: Introduction to mechanics
Week 2: Motion in mechanics; straight-line and rotational motion
Week 3: Force and force fields
Week 4: Work, energy, and power
Week 5: Newton’s laws
Week 6: Kinetic and potential energy; impulse, momentum, and angular momentum
Week 7: Fluids. Pendulums
Week 8: MID-TERM EXAM WEEK
Week 9: Introduction to biomechanics: Application of mechanics to biological bodies
Week 10: Skeletal and muscular systems; Levers and joints
Week 11: Neurological system
Week 12: Mechanics of upper extremities: Shoulder, elbow, and wrist
Week 13: Mechanics of lower extremities: Hip and knee
Week 14: Mechanics of lower extremities: Ankle, foot, and trunk
Week 15: New technology in biomechanics
Week 16: FINAL EXAM WEEK
LABORATORY CONTENT
Week 1-11: The laboratory course is designed so that the students repeat the concepts thought during
the lectures in form of numerical problems in the first part of the semester. The second part of the course
is mainly focused on reading scientific articles related to biomechanics, that is, human movement.
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Tutorials
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Describe the mechanics of rigid bodies and its application to biological systems
2. Outline the significance of biomechanics with regards to biological bodies and systems
3. Name new technologies in biomechanics
4. Explain the basic physical parameters in mechanics
5. Assess numerical problems regarding biomechanics
6. Critically discuss scientific articles related to biomechanics and human movement
Prerequisite Course(s)
(if any)
None.
90
Language of Instruction English
Mandatory Literature Beer, F., Johnston, E. R., & Mazurek, D. (2012). Vector mechanics for engineers: Statics, 10th ed. New
York, NY, USA: McGraw-Hill Science
Recommended Literature Chandran, K. B. (1992). Cardiovascular Biomechanics, 1st ed. New York, NY, USA: New York
University Press
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 1 14 14
Seminar / Presentation 1 18 18
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 339 Course Name: RECOMBINANT DNA TECHNOLOGY
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2+2 Total Hours: 30+30
Course Description
The course deals with procedures that have been developed to successfully conduct DNA recombination
and produce chimeric DNA, which includes DNA isolation, restriction digestion, DNA ligation,
selection and screening, etc. An important part of the course is ethics related to recombinant DNA
technology. Lab course offers series of experiments that are supposed to show students experimental
workflow in a characteristic DNA recombination protocol.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
✔ Demonstrating practical experience of selected molecular biology techniques.
✔ Demonstrating basic techniques involved in recombinant DNA manipulations including
DNA restriction, ligation, transformation and selection of recombinant plasmid.
91
✔ Demonstrating the principle of PCR and its applications (e.g. Analysis of DNA repeats to
estimate its frequency in the population).
Course Contents
(weekly plan)
Week 1: Introduction to the course
Week 2: The basic terminology of recombinant DNA technology
Week 3: Recombination vectors: Plasmids, viruses, competent cells
Week 4: Restriction digestion of DNA samples
Week 5: Chemical synthesis of a DNA sequence
Week 6: DNA ligation
Week 7: Introduction of chimeric DNA into the host organism
Week 8: MID-TERM EXAM WEEK
Week 9: Expression of recombinant DNA
Week 10: Selection and screening for recombined DNA
Week 11: Recombinant proteins
Week 12: Applications of recombinant DNA technology
Week 13: Ethical considerations in recombinant DNA technology
Week 14: Analysis of scientific articles
Week 15: Student presentations
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS
Week 1: Beginning of classes
Week 2, Lab 1: Introduction to lab course
Week 3, Lab 2: Ethical considerations in recombinant DNA technology
Week 4, Lab 3: Recombinant DNA technology in bacteria: An overview
Week 5, Lab 4: Preparation of vector DNA: Plasmid isolation
Week 6, Lab 5: Restriction digestion of DNA samples
Week 7, Lab 6: DNA ligation and introduction of novel DNA into the host cell
Week 8: MID-TERM EXAM WEEK
Week 9, Lab 7: Growing host cells
Week 10 Lab 8: Selection and screening for recombined DNA
Week 11, Lab 9: Usage of recombinant DNA
Week 12, Lab 10: Student presentations
Week 13, Lab 11: Student presentations
Week 14: Preparation for practical exam
Week 15: Practical exam from lab course
Week 16: FINAL EXAM WEEK
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to: 1. Categorize molecular mechanisms underlying the PCR reaction
2. Handle molecular cloning
3. Prepare basic tools of engineering: restriction enzymes, ligation, etc.
4. Operate PCR
5. Perform bacterial transformation
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Sandhu, S.S. (2010). Recombinant DNA Technology, 1st ed. New Delhi, India: International Publishing
House
92
Recommended Literature Chaudchuri, K. (2013). Recombinant DNA Technology, 1st ed. New Delhi, India: TERI
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 18 18
Seminar / Presentation 14 14
Total Workload 125
ECTS Credit (Total Workload / 25) 5
Course Code: GBE 340 Course Name: PLANT PATHOLOGY
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course examines disease progression in plants on molecular and morphologic level. Also,
symptoms of plant disease, as well as plant immune system are covered in the first part of the course.
The second part of the course discusses biological agents causing plant diseases, such as bacteria,
viruses, and fungi. Lab course is offering students an opportunity to experimentally examine disease
progression when it is caused by different biological agents and to compare them.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to plant diseases caused by fungi, bacteria, viruses, nematodes and higher
parasitic plants.
● Explaining vectors as means of disease transmission.
● Explaining genetics of plant diseases.
● Giving an outline of plant defense mechanisms.
Course Contents
(weekly plan)
Week 1: Introduction: History of plant pathology and early significant plant diseases
Week 2: Parasitism and disease development. Pathogenesis
Week 3: Genetics of plant disease
Week 4: How pathogens attack plants
Week 5: How plants defend themselves against pathogens
Week 6: Environmental effects on the development of infectious plant disease
Week 7: Plant disease epidemiology
Week 8: MID-TERM EXAM WEEK
Week 9: Control of plant diseases
Week 10: Plant diseases caused by bacteria and mollicutes
Week 11: Plant diseases caused by viruses
Week 12: Plant diseases caused by fungi
93
Week 13: Plant diseases caused by protozoa
Week 14: Plant diseases caused by nematodes
Week 15: Plant diseases caused by parasitic plants
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS
Week 1-11: In the lab course, students will get a theoretical introduction into the symptoms and
causative agents of plant diseases. Following that, they will grow plants and infect them with various
causative agents. They will subsequently observe the development of disease symptoms on the plants,
record the results, and discuss them together.
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
1. Define pathogenesis
2. Recall the basics of plant disease caused by viruses
3. Classify plant viruses
4. Recall basics of plant diseases caused by fungi
5. Describe transmission of plant viruses through vectors
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Schumann, G. L. & D’Arcy, C. J. (2009). Essential plant pathology, 2nd ed. St. Paul, MN, USA:
American Phytopathological Society
Recommended Literature Sambamurty, A.V.S.S. (2005). Textbook of Plant Pathology, 1st ed. New Delhi, India: IK International
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 14 14
Seminar / Presentation 18 18
Total Workload 125
ECTS Credit (Total Workload / 25) 5
94
Course Code: GBE 341 Course Name: BIOPHYSICS
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course is focused on the application of physical principles in order to: (1) perform a detailed study
of DNA structure and interactions within DNA building blocks, (2) understand the structure and
formation of RNA and proteins, and (3) introduce processes occurring within the basic biological
structures, such as biological membranes.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to physical principles in biophysical processes, biomedical engineering problems.
● Showing the correlation between physics and biological sciences.
● Revising the basics of DNA structure.
● Explaining the impact of physical forces on DNA structure.
● Providing an outline of RNA, protein, molecular and medical biophysics.
Course Contents
(weekly plan)
Week 1: Introduction to biophysics
Week 2: DNA structure
Week 3: Base-pair interactions and DNA melting
Week 4: Mechanics and statistical mechanics of DNA
Week 5: Electrostatics of DNA and DNA-DNA interactions
Week 6: DNA collapse and DNA mesophases
Week 7: DNA organization in chromatin and viruses
Week 8: MID-TERM EXAM WEEK
Week 9: Biophysics of RNA
Week 10: Biophysics of proteins
Week 11: Molecular biophysics
Week 12: Membrane biophysics
Week 13: Medical biophysics
Week 14: Biomechanics
Week 15: Methods in molecular biophysics
Week 16: FINAL EXAM
LABORATORY CONTENTS
Week 1-11: The laboratory course is designed so that the students prepare oral presentations and
discuss scientific articles on topics covered during the lectures and improve their knowledge in that
way.
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Tutorials
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 20 % Class Deliverables 0 %
Presentation 0 % Final Exam 40 %
95
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
● Recognize basic physical principles underlying biological processes
● Relate physical principles to biophysical processes
● Apply the knowledge of physical principles on engineering problems
● Make DNA models
● Deliver an effective presentation
Prerequisite Course(s)
(if any)
None
Language of Instruction English
Mandatory Literature Hobbie, R. K. & Roth, B. J. (2009). Intermediate Physics for Medicine and Biology, 4th ed. New York,
NY, USA: Springer
Recommended Literature
Nelson, P. (2003). Biological Physics: Energy, Information, Life, 1st ed. New York, NY, USA: W. H.
Freeman
Davidovits, P. (2001). Physics in Biology and Medicine. Waltham, MA, USA: Academic Press
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 14 14
Seminar / Presentation 18 18
Total Workload 125
ECTS Credit (Total Workload / 25) 5
96
Course Code: GBE 343 Course Name: VIROLOGY
Level: Undergraduate Year: II, III Semester: III, IV, V, VI ECTS Credits: 5
Status: Elective Hours/Week: 2+2 Total Hours: 30+30
Course Description
This course is aimed at providing students with an introduction to virology. Students will become
familiar with history and scope, virus structure their multiplication and growth in laboratory conditions.
Further on they will be familiarized with the effect of physical and chemical agents on viruses as well
as their ecology. Basics of viral classification will be elaborated as well as some viral families and
genera.
Course Objectives
The cognitive, affective and behavioral objectives of this course are following:
● Introduction to virus structure
● Understand the basics of viral taxonomy
● Do experimental design and manipulation with viruses,
● Conduct viral analysis and understand their possible application.
Course Contents
(weekly plan)
Week 1: Introducion to the course
Week 2: History and development of virology
Week 3: Virus structure, chemical composition, basic characteristics and classification
Week 4: Viral proliferation and replication
Week 5: Workshop: paper analysis
Week 6: Pathogenesis and cell damage
Week 7: Transformation and pathogenesis
Week 8: MIDTERM EXAM WEEK
Week 9: Vaccines and Chemotherapy
Week 10: Epidemiology and Viral Evolution
Week 11: Laboratory methods for study of viruses and Viral Classification
Week 12: Workshop: discovery of novel viruses and their molecular identification
Week 13: DNA viruses
Week 14: RNA viruses
Week 15: Retroviruses
Week 16: FINAL EXAM WEEK
LABORATORY CONTENTS
Week 1-14 A set of laboratory exercises that cover the topics of cell culture and viral infection.
Teaching Methods
Description
● Interactive lectures and communication with students
● Discussions and group work
● Presentations
● Guest instructors
● Research projects
● Laboratory work
Assessment Methods
Description (%)
Quiz 0 % Lab/Practical Exam 20 %
Homework 0 % Term Paper 0 %
Project 20 % Attendance 0 %
Midterm Exam 30 % Class Deliverables 0 %
Presentation 0 % Final Exam 30 %
Total 100 %
Learning Outcomes
After completion of this course, students should be able to:
● Recall and name basic virology laboratory techniques, as well as explain the foundations of virology
● Demonstrate understanding of viral structure and replication cycles
● Translate the knowledge from this course in future virology courses and/or having a good appreciation of concepts needed to make reasoned choices in their everyday lives
● Interpret and explain how viruses survive where they do, how they are related, and how they
interact with us
● Operate with basic microbiological skills and successfully use them in the lab
Prerequisite Course(s)
(if any)
None
Language of Instruction English
97
Mandatory Literature Modrow, S., Falke, D., Truyen, U., & Schätzl, H. (2013). Molecular virology. Berlin: Springer.
Recommended Literature Knipe, D. M., & Howley, P. M. (2001). Fundamental virology (No. Ed. 4). Lippincott Williams &
Wilkins
ECTS (ALLOCATED BASED ON STUDENT’S WORKLOAD)
Activities Quantity Duration Workload
Lecture (15 weeks x Lecture hours per week) 15 2 30
Laboratory / Practice (15 weeks x Laboratory / Practice hours per week) 15 2 30
Midterm Examination (1 week) 1 2 2
Final Examination (1 week) 1 2 2
Preparation for Midterm Examination 1 14 14
Preparation for Final Examination 1 15 15
Assignment / Homework / Project 14 14
Seminar / Presentation 18 18
Total Workload 125
ECTS Credit (Total Workload / 25) 5