in vivo quantification of contrast agent concentration...

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In vivo quantification of contrast agent concentration using the induced magnetic field for time-resolved arterial input function measurement with MRI Ludovic de Rochefort, Thanh Nguyen, Ryan Brown, Pascal Spincemaille, Grace Choi, Jonathan Weinsaft, Martin R. Prince, and Yi Wang a Cornell Cardiovascular Magnetic Resonance Imaging Laboratory, Radiology Department, Weill Medical College of Cornell University, New York, New York 10022 Received 18 June 2008; revised 22 September 2008; accepted for publication 23 September 2008; published 6 November 2008 For pharmacokinetic modeling of tissue physiology, there is great interest in measuring the arterial input function AIF from dynamic contrast-enhanced DCE magnetic resonance imaging MRI using paramagnetic contrast agents. Due to relaxation effects, the measured signal is a nonlinear function of the injected contrast agent concentration and depends on sequence parameters, system calibration, and time-of-flight effects, making it difficult to accurately measure the AIF during the first pass. Paramagnetic contrast agents also affect susceptibility and modify the magnetic field in proportion to their concentration. This information is contained in the MR signal phase which is discarded in a typical image reconstruction. However, quantifying AIF through contrast agent susceptibility induced phase changes is made difficult by the fact that the induced magnetic field is nonlocal and depends upon the contrast agent spatial distribution and thus on organ and vessel shapes. In this article, the contrast agent susceptibility was quantified through inversion of magnetic field shifts using a piece-wise constant model. Its feasibility is demonstrated by a determination of the AIF from the susceptibility-induced field changes of an intravenous bolus. After in vitro vali- dation, a time-resolved two-dimensional 2D gradient echo scan, triggered to diastole, was per- formed in vivo on the aortic arch during a bolus injection of 0.1 mmol / kg Gd-DTPA. An approxi- mate geometrical model of the aortic arch constructed from the magnitude images was used to calculate the spatial variation of the field associated with the bolus. In 14 subjects, Gd concentration curves were measured dynamically one measurement per heart beat and indirectly validated by independent 2D cine phase contrast flow rate measurements. Flow rate measurements using indi- cator conservation with this novel quantitative susceptibility imaging technique were found to be in good agreement with those obtained from the cine phase contrast measurements in all subjects. Contrary to techniques that rely on intensity, the accuracy of this signal phase based method is insensitive to factors influencing signal intensity such as flip angle, coil sensitivity, relaxation changes, and time-of-flight effects extending the range of pulse sequences and contrast doses for which quantitative DCE-MRI can be applied. © 2008 American Association of Physicists in Medi- cine. DOI: 10.1118/1.3002309 Key words: susceptibility quantification, magnetic field, inversion, piece-wise constant, in vivo, MR contrast agent, arterial input function, gadolinium I. INTRODUCTION Quantifying tracer concentration is essential for pharmacoki- netic modeling to assess organ and tissue function. 1 Dynamic contrast-enhanced DCE techniques for MR angiography 2 or perfusion imaging 35 traditionally rely on blood signal in- tensity enhancement due to contrast agent CA induced T 1 shortening. T 1 mapping with inversion-recovery techniques can be applied to calculate CA concentration, but long acqui- sition times are required. 6 Faster techniques have been devel- oped which model the nonlinear signal intensity behavior in the applied sequence. 7 Three-dimensional fast gradient echo sequences are commonly used for which the steady-state sig- nal intensity can be related to concentration under multiple simplifying assumptions such as neglecting transverse relax- ation for low doses. 35,8 For quantification, a scan is usually performed to obtain tissue precontrast relaxation parameters, sensitivity maps, and to calibrate the flip angle. 3 However, inflow effects may modify the steady-state signal intensity making absolute CA quantification difficult when faster se- quences such as two-dimensional 2D are employed. 3,9 CA relaxivity may also change depending on macromolecular content making the extraction of concentration from the sig- nal intensity curve more complex. 10 In addition, T 2 * apparent relaxation adds to the complexity of linking signal intensity to concentration. 11 The arterial input function AIF is critical for quantitative functional assessment. 5 The AIF measured from signal mag- nitude suffers from nonlinearity at typical peak concentration levels and is subject to the aforementioned sources of error. 5328 5328 Med. Phys. 35 12, December 2008 0094-2405/2008/3512/5328/12/$23.00 © 2008 Am. Assoc. Phys. Med.

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Page 1: In vivo quantification of contrast agent concentration ...pbsb.med.cornell.edu/pdfs/GdconcentrationMRSQUID.pdf · CA concentration, but did not quantify concentration.21 Phase-difference

In vivo quantification of contrast agent concentration using the inducedmagnetic field for time-resolved arterial input function measurementwith MRI

Ludovic de Rochefort, Thanh Nguyen, Ryan Brown, Pascal Spincemaille, Grace Choi,Jonathan Weinsaft, Martin R. Prince, and Yi Wanga�

Cornell Cardiovascular Magnetic Resonance Imaging Laboratory, Radiology Department, Weill MedicalCollege of Cornell University, New York, New York 10022

�Received 18 June 2008; revised 22 September 2008; accepted for publication 23 September 2008;published 6 November 2008�

For pharmacokinetic modeling of tissue physiology, there is great interest in measuring the arterialinput function �AIF� from dynamic contrast-enhanced �DCE� magnetic resonance imaging �MRI�using paramagnetic contrast agents. Due to relaxation effects, the measured signal is a nonlinearfunction of the injected contrast agent concentration and depends on sequence parameters, systemcalibration, and time-of-flight effects, making it difficult to accurately measure the AIF during thefirst pass. Paramagnetic contrast agents also affect susceptibility and modify the magnetic field inproportion to their concentration. This information is contained in the MR signal phase which isdiscarded in a typical image reconstruction. However, quantifying AIF through contrast agentsusceptibility induced phase changes is made difficult by the fact that the induced magnetic field isnonlocal and depends upon the contrast agent spatial distribution and thus on organ and vesselshapes. In this article, the contrast agent susceptibility was quantified through inversion of magneticfield shifts using a piece-wise constant model. Its feasibility is demonstrated by a determination ofthe AIF from the susceptibility-induced field changes of an intravenous bolus. After in vitro vali-dation, a time-resolved two-dimensional �2D� gradient echo scan, triggered to diastole, was per-formed in vivo on the aortic arch during a bolus injection of 0.1 mmol /kg Gd-DTPA. An approxi-mate geometrical model of the aortic arch constructed from the magnitude images was used tocalculate the spatial variation of the field associated with the bolus. In 14 subjects, Gd concentrationcurves were measured dynamically �one measurement per heart beat� and indirectly validated byindependent 2D cine phase contrast flow rate measurements. Flow rate measurements using indi-cator conservation with this novel quantitative susceptibility imaging technique were found to be ingood agreement with those obtained from the cine phase contrast measurements in all subjects.Contrary to techniques that rely on intensity, the accuracy of this signal phase based method isinsensitive to factors influencing signal intensity such as flip angle, coil sensitivity, relaxationchanges, and time-of-flight effects extending the range of pulse sequences and contrast doses forwhich quantitative DCE-MRI can be applied. © 2008 American Association of Physicists in Medi-cine. �DOI: 10.1118/1.3002309�

Key words: susceptibility quantification, magnetic field, inversion, piece-wise constant, in vivo,MR contrast agent, arterial input function, gadolinium

I. INTRODUCTION

Quantifying tracer concentration is essential for pharmacoki-netic modeling to assess organ and tissue function.1 Dynamiccontrast-enhanced �DCE� techniques for MR angiography2

or perfusion imaging3–5 traditionally rely on blood signal in-tensity enhancement due to contrast agent �CA� induced T1

shortening. T1 mapping with inversion-recovery techniquescan be applied to calculate CA concentration, but long acqui-sition times are required.6 Faster techniques have been devel-oped which model the nonlinear signal intensity behavior inthe applied sequence.7 Three-dimensional fast gradient echosequences are commonly used for which the steady-state sig-nal intensity can be related to concentration under multiple

simplifying assumptions such as neglecting transverse relax-

5328 Med. Phys. 35 „12…, December 2008 0094-2405/2008/35„

ation for low doses.3–5,8 For quantification, a scan is usuallyperformed to obtain tissue precontrast relaxation parameters,sensitivity maps, and to calibrate the flip angle.3 However,inflow effects may modify the steady-state signal intensitymaking absolute CA quantification difficult when faster se-quences �such as two-dimensional �2D�� are employed.3,9 CArelaxivity may also change depending on macromolecularcontent making the extraction of concentration from the sig-nal intensity curve more complex.10 In addition, T

2* apparent

relaxation adds to the complexity of linking signal intensityto concentration.11

The arterial input function �AIF� is critical for quantitativefunctional assessment.5 The AIF measured from signal mag-nitude suffers from nonlinearity at typical peak concentration

levels and is subject to the aforementioned sources of error.

532812…/5328/12/$23.00 © 2008 Am. Assoc. Phys. Med.

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5329 de Rochefort et al.: QSI for in vivo contrast agent concentration measurement 5329

However, paramagnetic and superparamagnetic CAs canmodify blood susceptibility and shift its resonant frequency.8

To avoid difficulties in CA concentration quantification fromthe signal magnitude, we utilize this frequency shift informa-tion, which is intrinsically contained in the signal phase.12,13

Phase mapping, as in phase-contrast �PC� velocity quantifi-cation, is advantageous as it is known to be relatively inde-pendent of parameters such as flip angle, coil sensitivity, orinflow effects.14 Nevertheless, the field shifts induced by CAare not spatially uniform and depend on vessel or organ ge-ometry and its orientation with respect to the external field.15

In most in vitro and in vivo applications, simplified geometri-cal models are usually assumed.12,13,15,16 For example, aninfinite cylinder model is commonly used to describe thegeometry of major blood vessels.15,17 These models havebeen extensively validated in vitro,12,16,17 and have been ap-plied to estimate liver iron content from the shifts in portaland hepatic veins,18 to measure global brain oxygenextraction,19 and to differentiate veins and arteries in the pe-ripheral vasculature.20 A small animal study encouraginglyreported approximate linearity between frequency shifts andCA concentration, but did not quantify concentration.21

Phase-difference mapping has also been used to assess CAconcentration in the mouse brain in vivo.17 However, thisstudy relied on the infinite cylinder model which may limitits applicability to properly aligned vessels. Furthermore, op-timization of parameters such as CA dosage and imagesignal-to-noise ratio �SNR� may be required for precise AIFquantification,22 while unbiased quantification also requiresthat CA distribution in the vasculature and vascular geometrybe known.23

With magnetic resonance imaging �MRI�, the geometry ofmajor blood vessels can be defined from the signal intensitymaps and the simultaneously acquired signal phase can beused for CA quantification. Based on these principles, wedescribe a general technique to process CA-induced phasedata to extract the concentration of CA over time as a stepforward from previous works that did not fully address theissue of determining the conversion between phase shifts andconcentration.17,22 The method proposed here can be appliedto vessels or organs of arbitrary shape and to MR data ac-quired using a variety of pulse sequences and scan param-eters and utilizes geometrical and phase information frommultiple voxels to quantify CA concentration. Proof of con-cept is shown by quantifying the AIF with high temporalresolution using a fast gradient-echo sequence to during thefirst-pass of a Gd �gadolinium�-bolus injection without theneed for a time consuming three-dimensional �3D� scan. Ageometrical model of the aortic arch is constructed frommagnitude images to model the observed field shifts and isused to dynamically quantify Gd concentration. This abso-lute quantification technique is shown to be linear in theentire range of concentration used in vivo and insensitive to

signal intensity variations.

Medical Physics, Vol. 35, No. 12, December 2008

II. THEORY

II.A. Magnetic field variations induced by CAs

A paramagnetic or superparamagnetic CA modifies bloodmagnetic susceptibility in proportion to its concentration:���r��=�m�CA��r��, where r� is the position vector, �CA��r��the CA spatial distribution and �m the molar susceptibility ofthe injected compound.24 Neglecting diffusion effects forvoxel sizes much larger than the diffusion length �2DTE�typically 1–10 �m�, where D is the free diffusion coeffi-cient and TE is the echo time, the phase blurring is negligibleand can be assumed to be proportional to the local magneticfield. Let Bref=�ref /�TE be the precontrast field componentmeasured on the MR signal phase �ref at TE before injection,where � is the gyromagnetic ratio. After contrast injectionthe field B=� /�TE is modified and can be modeled as aspatial convolution25–27

�Bz,local�r�� = B − Bref = B0��� � d��r�� , �1�

where d= �3 cos2���−1� /4��r�3 is the field component alongB0 induced by a unit magnetic dipole in spherical coordinates�with r as the radial position and � as the angle with B0�.This relationship is briefly derived in Appendix A and showsthat the effects on the field are purely linear with concentra-tion. Nevertheless, the shifts are not spatially uniform as aresult of the convolution with a dipole field.

For a given object i �such as an organ or vessel of interest�defined by its geometry Gi �defined as the mask that is 1inside the object, and 0 outside�, with uniform susceptibility��i, Eq. �1� �see also Appendix A� indicates that the contri-bution to the field shifts of this object is given by

�Bi�r�� = ��iB0�Gi � d��r�� = ��iB0Fi�r�� , �2�

where the shape factor Fi=Gi � d varies in space and can becalculated from the Maxwell equations.25,26 Equation �2�shows that the field shift depends on the shape of the vesselor organ that contains CA and can have effects inside as wellas outside the object. Given a geometrical model of eachobject that contains CA �e.g., arteries, veins, organs�, Eq. �1�allows the measured field shift to be written as a linear com-bination of the effects induced by individual objects

�B�r�� = �i

�Bi�r�� = B0�i

��iFi�r�� . �3�

To quantify the change in susceptibility and concentration,the shape factors Fi, or equivalently, the geometry of eachobject, must be known. Simplified models such as the infinitecylinder may be assumed in certain cases. More complexshapes such as the aortic arch can also be estimated fromMRI intensity images.

Assuming the shape factors can be estimated, the CA con-centration within each object can be estimated using a linearleast-squares inversion28,29

�CA�i = �F�F�−1Fi��B/�mB0, �4�

where �CA�i denotes the CA concentration inside object i, F

is a matrix containing the shape factors, and �B denotes a
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5330 de Rochefort et al.: QSI for in vivo contrast agent concentration measurement 5330

vector containing the measured field at selected locations.We refer to this approach as quantitative susceptibility imag-ing �QSI�. Additionally, the covariance matrix of the esti-mated concentrations �CA

2 can be determined from the noisevariance of the residual field:29 �B

2 =var�F��B0−�B� and byconsidering the noise propagation effect of a linear system

�CA2 = �F�F�−1�B

2 /�mB0. �5�

II.B. Relaxation effects on signal intensity induced byCAs

For comparison with the QSI technique, signal intensitybehavior is briefly reviewed for the spoiled gradient-echosequence �for more details see Ref. 3�. In the fast exchangeregime,8 which is typically used to analyze signal intensitycurves, the postcontrast relaxation rates are assumed to scalelinearly with concentration: R1=R1,0+r1�CA�, R

2*=R

2,0*

+r2*�CA�, where R1,0 and R

2,0* are the precontrast longitudinal

and transverse relaxation rates and r1 and r2* are the longitu-

dinal and transverse relaxivities, respectively. Neglectingtime-of-flight effects, the relative signal enhancement be-tween the steady-state signal intensity of the reference pre-contrast scan S0 and that of the postcontrast scan S can bedefined as3,15

E =S

S0− 1 =

�E1 − 1��E1,0 cos�� − 1�E2

�E1,0 − 1��E1 cos�� − 1�E2,0− 1, �6�

where Ei=exp�−TRRi� for i=1 /1,0 and Ei=exp�−TERi*� for

i=2 /2,0, TR is the sequence repetition time, and is the flipangle.

If transverse relaxation is neglected, concentration can beapproximated on a pixel-by-pixel basis as

�CA� �1

r1− 1

TRlogE�E1,0 − 1� + E1,0�1 − cos���

1 + cos���E�E1,0 − 1� − 1� � − R1,0� ,

�7�

where log denotes the natural logarithm. For low doses a

FIG. 1. Geometrical model of the curved tube and shape factor estimation usare aligned with B0. �b� 3D triangular surface mesh used for shape factor calcthat compares well with the measured field map �d� �in parts per million�. Stais observed. Field decreases in the curvature down to negative values in the

linear approximation can be used

Medical Physics, Vol. 35, No. 12, December 2008

�CA� �R1,0

r1E . �8�

Both signal intensity and phase analysis for a fast 2D spoiledgradient-echo sequence are evaluated here during the firstpass of a CA injection.

III. MATERIALS AND METHODS

All imaging experiments were performed using a 1.5 Tcommercial scanner �GE Healthcare, Waukesha, WI�. Aneight-channel cardiac phase-array coil was used for signalreception.

III.A. In vitro experiments

A 16-mm diameter flexible vinyl tube was fixed to a flatsurface with a curvature radius of 75 mm to mimic the aorticarch �Fig. 1�. Tap water was pumped into the tube at a flowrate of 77.52 ml /s as determined from two exit volumemeasurements over a 60 s interval.

Time resolved 2D spoiled gradient-echo images were ac-quired every 0.6 s �using a simulated heart rate of 100 beatsper minute� in the coronal plane during a Gd-DTPA bolusinjection �Magnevist, Berlex Laboratories, Wayne, NJ�. Thebolus was injected with a power injector �Medrad, Pitts-burgh, PA� for 20 s followed by a 20 s water flush. Six ex-periments were repeated with an injection rate varying from0.5 to 3 ml /s �by 0.5 ml /s increment�. Imaging parameterswere: field-of-view �FOV�=30 cm, phase FOV factor=0.7,matrix size 128�90, slice thickness=8 mm, bandwidth�BW�=390 Hz /pixel, TR /TE=4.7 /2.1 ms �full-echo�, flipangle �FA�=30°, 120 time frames. The sequence also re-corded the start acquisition time for each time frame so thatpotential loss of trigger during the long breath-hold could becompensated for during postprocessing. This acquisition willbe referred to as the QSI scan.

Additionally, longitudinal and transverse relaxation ratesof tap water were measured using a 2D inversion recoveryspin-echo sequence with imaging parameters FOV=15 cm,slice thickness=1 cm, BW=244 Hz /pixel, TR /TE=15 s /10 ms, matrix size 256�128, inversion time �TI�=50 ms, 2, 4 s, and infinity �inversion pulse disabled�, and a2D gradient echo sequence with identical imaging param-

r validation. �a� Intensity image of the curved tube, whose straight segmentsn following 2D contouring. �c� Calculated shape factor in the tube �unitless�from positive shifts in the straight parts of the tube, a spatially varying shift

dle of the curvature.

ed foulatiortingmid

eters, except for TR /TE=207 ms /3.4, 53.4, 103.4, 153.4,

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5331 de Rochefort et al.: QSI for in vivo contrast agent concentration measurement 5331

203.4 ms, respectively. Mean signal intensities were mea-sured within a region of interest and were then fitted to athree-parameter �M0−Minv exp�−TIR1,0�� and a two-parameter �M0 exp�−TER2,0�� exponential model to estimateprecontrast longitudinal and transverse relaxation rates, re-spectively, using nonlinear least squares. In these models, M0

and Minv account for initial and inverted magnetizations.

III.B. In vivo experiments

The human study was approved by our local InstitutionalReview Board and written informed consent was obtainedfrom each subject prior to imaging. Experiments were per-formed on nine healthy volunteers and five patients sus-pected of cardiovascular disease �seven males, seven fe-males, mean age=5018 years, age range 18–75 years�.Vector electrocardiographic gating was used for cardiac syn-chronization.

The protocol consisted of three breath-hold scans. First, acine PC scan was performed in a plane perpendicular to theascending aorta during a 20 s breath-hold with the follow-ing imaging parameters: FOV=28 cm, phase FOV=0.8,slice thickness=8 mm, BW=244 Hz /pixel, TR /TE=8 /3.3 ms, matrix size 256�204, flip angle=25°, 28 recon-structed cardiac phases, velocity encoding=150 cm /s. Next,the QSI scan of the aortic arch was performed to acquire onediastolic image per heartbeat in a plane through the aorticarch during the first-pass of a Gd-DTPA bolus injection�Magnevist, Berlex Laboratories, Wayne, NJ�. Single doses�0.1 mmol /kg� were injected with the power injector at aflow rate varying from 2 to 3 ml /s, followed by a20-ml–30-ml saline flush. Typical imaging parameters were:FOV=30–40 cm, phase FOV 0.5–0.7, matrix size=128�64–90, slice thickness=8 mm, BW=390 Hz /pixel,TR /TE=4.5–5 /2–3 ms �full echo�, FA=30°, 32–48 timeframes. Acquisition time for each frame was 300–448 ms.Injection and image acquisition were started simultaneously.Finally, a cine PC scan was repeated after the QSI scan. Infive subjects, the QSI protocol was repeated after approxi-mately 5 min to assess intraindividual reproducibility of themethod. As clearance is relatively slow, it can safely be ne-glected during the acquisition time ��1 min�. Additively, af-ter 5 min, the first CA bolus is sufficiently homogeneouswithin blood so as not to affect the phase-difference basedQSI method.

III.C. Field map calculation and CA concentrationquantification

For each coil element, the raw k-space data were Fouriertransformed into image space. To optimally combine signalsfrom all coils, relative complex sensitivity maps were esti-mated from the sum of complex signals over all acquiredtime frames. For each frame, phase corrected signals fromindividual coils were combined using weighted linear leastsquares30 where weightings were inversely proportional tothe signal intensity of relative sensitivity maps.31 A precon-trast field map was estimated as the mean field value of the

last ten acquired frames �in vitro experiment�, or of the first

Medical Physics, Vol. 35, No. 12, December 2008

three precontrast frames �in vivo experiment� to avoid con-tamination of the field map by recirculation. Subtracting theprecontrast field obtained prior to CA injection from everyframe is necessary for an accurate assessment of effects in-duced exclusively by the CA.

To estimate the shape factor, a simplified 3D geometricalmodel of the curved tube or aortic arch was constructedsemiautomatically from the 2D signal intensity map summedover all acquired frames. The curved tube or aorta wasmanually outlined on the 2D image by selecting few pointson the tube or aorta boundary. The contour was then interpo-lated using spline fitting. Two-dimensional Delaunay trian-gulation was performed on the spline points. Two-dimensional triangulation was converted into a closed 3Dtriangular surface mesh by creating connected circles overeach 2D triangle edge. Knowing the shape and its orientationwith respect to B0, the shape factor F �Eq. �2�� was calcu-lated for each pixel within the imaged slice and inside thetube/aortic arch model using a Maxwell boundary elementmethod on the surface mesh25,26 �see Appendix B�. To extractconcentration for each time frame, Eq. �4� was used assum-ing �m=326 ppm /M at 298 K �in vitro� and 308 ppm /M at310 K �in vivo� for Gd3+.24,32 The residual sum-of-squarewas calculated as an estimate of the field measurement noisevariance and then used to estimate the 95% confidence inter-val on the concentration by noise propagation29 �Eq. �5��. Forcomparison with previous approaches,17,22 the infinite cylin-der model was applied with shape factor F=1 /2�cos2���−1 /3�, where � represents the orientation of the cylinderwith respect to B0. This approach is conceptually similar: theorientation of the aorta must be evaluated which is equiva-lent to estimating the geometry. For a fair comparison, in-stead of using single voxel measurements as in previousworks, information from multiple points within the aorta wascombined. The mean shift within the straight part of the de-scending aorta was calculated and converted to concentrationassuming F=1 /3 for all points �the cylinder model parallelto B0�.17

Similarly, signal enhancement �Eq. �6�� was calculated us-ing the base line intensity map from the same frames usedfor precontrast field estimation. The mean signal enhance-ment within the curved tube or aorta was calculated and con-trast concentration was estimated using both nonlinear �Eq.�7�� and linear �Eq. �8�� approximations. The following fit-ting parameters were used: R1,0 /R

2,0* =0.45 /0.83 s−1 for tap

water �measured previously�, R10 /R20* =0.69 /3.45 s−1 for

blood, and r1 /r2*=4.3 /5.2 mM−1 s−1 for gadolinium.3

III.D. Cardiac flow rate quantification

In contrast to in vitro experiments where the dilution iscontrolled and thus dilution concentration known, direct dy-namic measurement of CA concentration using non-MRItechniques �e.g., from blood extraction� in the aorta is prac-tically difficult. The flow rate was quantified instead usingindicator dilution principles,33 which is an indirect in vivovalidation of CA concentration. If neither loss of indicator

nor recirculation occurs, flow rate can be accurately mea-
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5332 de Rochefort et al.: QSI for in vivo contrast agent concentration measurement 5332

sured by integrating the dilution curve �Stewart–Hamiltonprinciple�. Consequently, the first pass has to be sufficientlyseparated from subsequent passes. Usually, for a short bolus,a dispersion model is used to increase precision of the inte-gration. Here, the dilution curve was fitted to a dispersionmodel �LDRW distribution, see, for example, Refs. 34 and35� using nonlinear least squares, which allows timing anddispersion parameters to be extracted from the first pass ofthe AIF,

�Gd��t� =MGd

f�

2���t − t0�exp�−

2�

�t − t0 − ��2

�t − t0� � ,

�9�

where MGd is the total amount of injected Gd, f is the flowrate, is a dispersion parameter determining how much thecurve is skewed, t0 is the time dispersion starts, and � isequivalent to the mean transit time. This standard model as-sumes a Gaussian indicator distribution around a moving av-erage position with a linearly increasing standard deviationas a function of time. This evolution has been found to ad-equately model indicator-dilution curves for short boluses.35

Note that for the in vitro experiment, flow rate was deter-mined simply by integrating the dilution curve over the en-tire scan time.

The QSI analysis procedure took 2 min per case, whichincluded manual segmentation of the aorta, geometricalmodel construction, and fitting procedures. This was re-peated six times using the same data set on one subject todetermine the reproducibility of the algorithm for cardiacflow quantification. For comparison, mean cardiac flow ratewas also obtained in vivo from standard processing of the PCdata.36,37 The aorta was manually outlined on the velocityimages and flow rate was calculated by integration over bothspace and time. Drawing the contours of the moving aortafor all 28 cardiac phases took 5 min per case. Bland–Altman analysis38 was then performed to assess the agree-ment between the two PC scans �before and after injection�

FIG. 2. In vitro results. �a� Temporal evolution of QSI measured �Gd� for thEq. �6��. After a rapid exponential increase due to dispersion in the tube, aexponential �Gd� decay occurred. �b� Measured signal enhancement E platetheoretical steady-state signal intensity curves �SS� are plotted for the prerelaxation, as well as the linear model assumed for low doses �SS signal, linerates with QSI and signal enhancement analysis: linear �Eq. �8�� and nonlimeasurement �2�CA from Eq. �5��.

to estimate PC reproducibility, between the first PC scan and

Medical Physics, Vol. 35, No. 12, December 2008

the QSI scan, and between the two QSI scans �in subjectswere more than one was performed�.

IV. RESULTS

IV.A. In vitro experiments

The geometrical model construction, shape factor calcula-tion, and measurement for the QSI in vitro experiments areshown in Fig. 1. The field in each location of the curved tubeexhibited an angular dependence similar to that of an infinitestraight cylinder with the same orientation as that of thecurved tube in that location. Good qualitative agreement canbe seen between the calculated shape factor and the mea-sured field shifts. After an initial increase in the concentra-tion, the concentration and the associated signal enhance-ment reached a stable plateau �Fig. 2�a��. Figure 2�b� showsthe measured signal enhancement plateau value as a functionof imposed concentration for the different experiments. Forcomparison, the theoretical steady-state signal intensity forthe nominal flip angle �30°� in the different models �linearand nonlinear with and without transverse relaxation� is alsoshown. For low concentrations, all models perform similarly.Note that only the model accounting for transverse relaxationdisplays saturation and closer similarity to the observed sig-nal enhancement over the range of concentrations in theseexperiments.

Extracted Gd concentrations determined from QSI andsignal enhancement techniques are shown in Fig. 2�c�. TheQSI technique provided results in excellent agreement withthe measurements over the entire concentration range��Gd�QSI=1.00�Gd�inj+0.12�. Furthermore, flow rate calcu-lated from the Stewart–Hamilton principle �78.41.3 ml /s,meanstandard deviation among the six experiments aftersubtraction of the injection rate� agreed with the calibration�77.52 ml /s�. Similar results were obtained with the sim-plified shape model of an infinite cylinder parallel toB0 ��Gd�cyl=0.97�Gd�inj−0.11�, indicating that the model ad-

m3 /s injection rate experiment and associated signal enhancement E �fromu was reached for �Gd�. When the Gd injection was flushed with water, anlue as a function of injected �Gd� for the different experiments. Calculatedd angle �30°� with �SS signal� and without �SS signal, no T2� transverse� Summary of the concentration obtained at the plateau for several injection�Eq.�7�� models. Error bars represent the 95% confidence interval on QSI

e 3 cplateaau vascribear�. �cnear

equately approximates the shape factor in the input branches

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5333 de Rochefort et al.: QSI for in vivo contrast agent concentration measurement 5333

of the phantom. In contrast, Gd concentration extracted usingsignal enhancement techniques was in poor agreement withthe known injection values as expected for such high con-centrations. The linear model was biased for small concen-trations and reached a plateau for concentrations over 5 mM.The nonlinear model reached closer estimates of Gd concen-tration in the low concentration range ��5 mM� but wasinaccurate for greater concentrations.

IV.B. In vivo experiments

Figures 3�a�–3�f� show representative time-resolved mag-nitude images of the heart and the aortic arch obtained dur-ing first pass Gd injection. Prior to contrast arrival in thearch, T

2* effects from the high Gd concentration in the neigh-

boring superior vena cava reduced signal intensity �solid ar-rows in Figs. 3�b� and 3�c�� while a distinct dipolar field

FIG. 3. Field map evolution in vivo. B0 is oriented in the superior-inferiorfemale patient and corresponding field maps ��g�–�l��. The number indicatewhere field maps are used as reference, a signal drop �T

2* effect� is observed

�c��, associated with a large induced magnetic field with a typical dipolar patobserved in the liver resulting from flowing CA in the above right heart �i� hthe aorta begin enhancing �d�, the field map gets more homogeneous �j� showqualitatively the same ��d� and �e��, a smooth spatial variation in field is obCA flows out of the volume.

Medical Physics, Vol. 35, No. 12, December 2008

pattern can be observed in the corresponding field maps�solid arrows in Figs. 3�h� and 3�i��. Subsequently, T1 signalenhancement was observed in the right atrium and ventricle,followed by the pulmonary system, the left atrium and ven-tricle, and finally the aortic arch �Figs. 3�d�–3�f��. Interest-ingly, during this period, the induced field variations wereprimarily concentrated in the aorta �Figs. 3�j�–3�l��, support-ing the single object model assumed here.

Figures 4�a� and 4�b� illustrates a contoured aortic archusing spline interpolation and corresponding 3D geometricalmodel. Note the strong similarity between the shape factorand the measured field �Figs. 4�c� and 4�d�� during CA pres-ence in the aorta following dilution through the pulmonarysystem, illustrating the effect of the convolution with thedipole field. The aorta shape factor ranged from approxi-

tion. Selected MR amplitude images ��a�–�f�� obtained from a 50 year olde from injection in seconds. Starting from precontrast conditions ��a�, �g��,to highly concentrated CA flowing through the superior vena cava ��b� and�h� and �i�� highlighted by an arrow �on �b� and �h��. A field variation is thenhted by arrows. Ventricle blood is enhanced in �j�. As the left ventricle andat CA through the lungs has limited effects. While signal amplitude remains

d in the aorta that increases in amplitude �k� before decreasing again �l� as

FIG. 4. Geometrical model of the aortaand shape factor estimation. �a� Manu-ally selected points �red circles� andinterpolated 2D contour of the aortaare displayed on a typical enhancedmagnitude image. �b� The contour isthen used to generate an approximateaortic arch 3D triangular surface meshused for the shape factor calculation.�c� Calculated shape factor in the aorta�unitless� that compares well to themeasured field map ��d� in parts permillion�. B0 orientation is approxi-mately up-down. Starting from posi-tive shifts in the ascending aorta, aspatially varying shift is observed.Field decreases in the curvature downto negative values near the carotid ar-teries and increases again in the de-scending aorta where the shift getsrelatively uniform.

direcs tim

duetern �ighliging thserve

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5334 de Rochefort et al.: QSI for in vivo contrast agent concentration measurement 5334

mately 0.32 to −0.10, depending on orientation with respectto B0. This field map approximately corresponds to the timeframe depicted in Fig. 3�e�.

A typical dilution curve obtained in vivo with QSI �Fig. 5�allows depiction of the first and second passes. Compared tothe QSI curve, the associated signal intensity enhancementcurve shows saturation during the first pass but similar trendduring the second pass. For the presented case, the signalenhancement curve was 6 times smaller than the theoreti-cal signal enhancement curve. This scaling factor was highlyvariable �0.100.04 among all 14 subjects� as may be ex-pected when time-of-flight effects are considered.9 The sig-nal enhancement saturation effect was seen in all 14 subjectsat concentrations � 5 mM. The cylinder model derived

FIG. 5. Representative AIFs during the first passes together with associatedsignal enhancement E �Eq. �6��. AIF obtained with the QSI ��Gd�QSI ingreen� technique together with the dispersion model and AIF obtained as-suming the infinite cylinder model ��Gd�cyl in red� closely follow the sametrend here. Each concentration measurement is plotted with its 95% confi-dence interval �2�CA from Eq. �5�� After bolus injection, a small increase isobtained �5–10 s� for which the shape factor does not correctly model thefield shift as indicated by the increase in the confidence interval. After thebolus reaches the aorta � 12 s�, the shifts were well represented by thesingle shape model, allowing a good depiction of the first and second passeson QSI-derived concentration curves. Signal enhancement is shown to satu-rate with �Gd� �measured with QSI�. Neglecting time-of-flight effects, thesignal enhancement should be six times greater in the steady-state signalmodel in this case. This indicates that signal enhancement cannot be used toestimate concentration absolutely and accurately here, contrarily to phase-based methods that exhibited a much sharper description of the first pass.

Medical Physics, Vol. 35, No. 12, December 2008

concentration curve gave the same unsaturated AIF withsimilar shape as that obtained using the QSI technique, butwith slightly smaller concentration values �Fig. 5�.

Reproducibility of the QSI analysis was found to be betterthan 2% demonstrating that the use of magnitude imagesenabled robust model construction and shape factor estima-tion. A precise concentration measurement was obtained af-ter the bolus reached the lungs with an estimated precisionon concentration close to 0.1 mmol /L �from Eq. �5�, 95%confidence interval 0.2 mmol /L�. The flow rate measure-ment using Eq. �4� was found to be robust for estimating thearea under the dilution curve, as modifying the interval con-sidered for first pass, as indicated in Ref. 35, did not signifi-cantly change the results. Time constants obtained for the 14subjects �meanstandard deviation� were t0=8.83.2 s and�=11.13.0 s. The arrival time �tm=17.23.5 s� was de-fined as the time from halfway through the bolus injection tothe estimated mean transit time � as depicted in Fig. 5. Fi-nally, the dispersion parameter was =9.65.2.

The Bland–Altman plot �Fig. 6� exhibited no significantbias or trend between QSI and PC flow measurements, andan agreement close to 10% of the mean flow rate�biasstandard deviation of the difference:1.39.8 ml/beat�. Consequently, the 95% limit of agreementbetween QSI and PC measurement was −18.3,20.9 ml/beatof PC measurement over the range of approximately60–140 ml/beat. PC repeatability was 12% and QSI re-peatability was 5%. The absence of bias indicates an accu-rate measurement of concentration in vivo. Comparison ofthe cylinder model results with those from PC �Fig. 6�a��indicated an average overestimation of flow rate by 20%and consequently an average underestimation of concentra-tion. It is noted that Fig. 5 presents a case where the concen-tration was indeed underestimated by the cylinder model ascompared to the QSI result. The Bland–Altman comparison�graph not shown� indicated a similar trend with an agree-ment of 19.018.8 ml/beat �biasstandard deviation of thedifference� showing significant bias between techniques.

V. DISCUSSION

Accurate quantification of paramagnetic contrast agentconcentration is required for assessing organ function

FIG. 6. QSI flow measurements. �a�Linear regression between QSI �QQSI�and PC �QPC� flow measurements�crosses� and between the infinite cyl-inder model �Qcyl, circles� and QPC.QSI and PC flows exhibited good cor-relation with a linear regression coef-ficient close to unity, whereas the cyl-inder model had a slightly smallercorrelation coefficient and overesti-mated flow by 23%. �b� Bland–Altmanplot comparing PC and QSI. Theagreement was 1.39.8 ml/beat.

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5335 de Rochefort et al.: QSI for in vivo contrast agent concentration measurement 5335

through perfusion in healthy and pathological tissue. How-ever, MRI signal enhancement is complicated by the nonlin-ear relationship with concentration and the dependence onmultiple parameters such as flip angle, coil sensitivity, infloweffects, and relaxation rates. Our preliminary data show thatparamagnetic contrast agent concentration can be measuredrapidly in vivo with a fast 2D gradient-echo sequence usingthe induced magnetic field shifts. Phase-based methods werelinear and precise. The presented QSI technique uses themagnitude image to estimate the shape factor and the phaseto determine the concentration using a linear least-square in-version of the induced field. This technique provided accu-rate Gd concentration measurement within the aorta duringthe first pass of a Gd bolus injection, from which the AIF andcardiac output could be derived for all 14 subjects. Signalintensity enhancement analysis failed to provide absolutemeasurement in the concentration range obtained in vivo dur-ing first pass. As a phase-based measurement technique, QSIaccuracy is expected to be relatively insensitive to the pa-rameters that influence signal intensity such as flip angle,coil sensitivity, inflow effects, and relaxation rates. Com-pared to previous phase-based techniques to estimate theAIF,17,22 the introduction of more precise geometrical infor-mation enables improved precision in CA concentration andflow rate measurements. This improvement could be particu-larly important for conditions where the aorta is more tortu-ous or for aneurisms and stenosis.

The QSI technique has a high degree of precision and isnot limited in the range of gadolinium concentration as indi-cated qualitatively by the smooth temporal evolution of thedilution curves, and quantitatively by the 95%-confidenceintervals. Concentration measurement given by QSI was pre-cise to 0.1 mM in the range of 0–20 mM commonly ob-tained in vivo. This precision is dependent on image SNR, asit is equivalent to field shift measurement precision. Asshown in previous work,22 phase-based methods require ac-quisition parameter optimization for AIF measurement. Here,the QSI method extends voxel-based measurement17,22 bycombining geometrical information and phase informationfrom multiple voxels for more accurate and precise concen-tration measurement. Considering measurement noise aver-aging, concentration precision is also approximately propor-tional to the square root of the number of points used forinversion, and thus on the apparent surface of the aorta in theimaging plane. Acquisition parameter optimization such asincreasing TE would increase the measurement precision.Nevertheless, as usual in phase measurement, wrappingshould be avoided. This limits TE to approximately2� /�B0�m�CA�max, which was close to 2.5 ms showing thatparameters were optimized in the current protocol. Precisionmay also be affected by the choice of the imaging plane andthe curved tube approximation of the aortic arch. Here, anoblique sagittal imaging plane was carefully chosen to bisectthe aorta such that its shape was well represented. QSI wasalso found to be rather robust against manual segmentationof the aorta � 2% variation�. The simplified curved tube

model appeared to be adequate in matching the calculated

Medical Physics, Vol. 35, No. 12, December 2008

shifts with the measured field patterns. The infinite cylindermodel used in previous works adequately modeled the shiftsin vitro. It provided AIFs very similar to those obtained usingQSI in vivo but was found to overestimate flow rates by 23%and to be less accurate. Although the infinite cylinder modelmay adequately estimate the shape factor in certain cases,our results show that 3D modeling improves shape factorestimation. Using high resolution 3D scans currently per-formed in clinical practice and more sophisticated segmenta-tion algorithms, more elaborate geometrical models may beconstructed to better describe anatomic variations and pro-vide further improvements.

To implement the QSI technique into a DCE-MRI proto-col, geometrical data can be acquired separately or within thesame scan. QSI requires postprocessing to define geometricalfeatures and to apply a simple linear fit of the phase data tocompute concentration. As phase measurement is not biasedby any intensity change �from inflow or relaxation effects�,there is more flexibility in setting up the experimental proto-col. For example, instead of acquiring successive full 3Ddata sets for dynamic studies, fewer slices could be acquiredin an interleaved manner to obtain concentration estimates atdifferent locations of interest simultaneously.

In DCE-MRI, a precontrast image is necessary for quan-tification. Similarly, for QSI a precontrast field is needed.The precontrast field that had been previously reported asbeing a possible major limitation for accurate susceptibilityquantification39 was not an issue here. A simple and com-monly used precontrast reference scan was acquired at ex-actly the same location allowing extraction of the CA-induced field effects only. As usual in difference methods,motion may affect the accuracy of the field mapping. Here,low resolution images were acquired during breath-holdingto minimize respiratory motion and gated to cardiac diastoleto reduce cardiac motion. Furthermore, for gated scans, theassumption that flow is reproducible between cardiac cyclesallows any additive motion-induced phase to be removedmaking the difference phase insensitive to flow.

Signal enhancement failed to provide accurate concentra-tion in our setup. In vitro, the steady-state model reasonablyaccounted for Gd-induced signal enhancement indicatinglow Gd concentration may be accurately quantified in thismanner. However, a small correction should be added to ac-count for both the slice profile40 and some inflow effects.9

The curved tube was coplanar with the slice and the assump-tions that flowing water is subject to a flip angle slightly lessthan that prescribed as well as limited inflow effects are rea-sonable. On the contrary, blood inflow and outflow effectsare much more complex in vivo. As indicated by the smalland highly variable scaling factor �0.100.04�, blood waslikely subject to time-of-flight effects which are extremelydifficult to estimate a priori. Signal intensity enhancementanalysis would underestimate concentration measurement asdetermined by QSI analysis by a factor of 10 and would beinaccurate for saturation concentrations obtained in vivo dur-ing the first passes �� 5 mM�. Efficient correction tech-

niques taking into account inflow effects have been proposed
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5336 de Rochefort et al.: QSI for in vivo contrast agent concentration measurement 5336

for through plane flow,9 but they might be challenging toimplement for in plane flow as evaluated here. This confirmsthat signal enhancement-derived concentration measure-ments are prone to error when using a 2D acquisition. Forrobust signal enhancement analysis, the signal must be atsteady-state in the entire volume and consequently a 3D ac-quisition or inflow modeling is required, limiting the rangeof sequences or imaging planes usable for DCE-MRI. Apractical consequence of the insensitivity of QSI to infloweffects is that a single slice can be acquired without restric-tion on its position and that a higher temporal resolution canbe obtained to estimate the rapidly changing concentration inthe first passes.

QSI relies on a geometrical and functional model thataccounts for the observed shifts. During the first pass, CAmixes well within the cardiac chambers and the pulmonicvasculature and rapidly flows through the aorta with fairlyuniform concentration. The single shape factor used in thisstudy can model the observed field shifts in the aorta withgood approximation, indicating that contributions fromneighboring organs may be neglected. For example, the CAin the small vessels surrounding the aorta has little effect andCA in the heart is likely to cause only a marginal field shiftin a major portion of the aortic arch due to distance. It isworth noting that the single shape model obviously did notcorrectly model the field shifts immediately before CA ar-rival in the right heart as highly concentrated CA flowsthrough the superior vena cava. However, this phenomenondid not affect the accuracy of AIF quantification in the aortabecause the bolus injection was short enough to sufficientlyseparate these time frames. The Stewart–Hamilton principlerequires the concentration-time curve after dilution. If aknown amount of CA flows through the heart, any locationdownstream would be suitable for measuring concentration,even if blood flow is divided �e.g., here in the coronary andcarotid arteries�. Consequently, other locations to measurefield shifts may be suitable, besides the aorta as demon-strated here. Measuring concentration elsewhere may addi-tionally allow quantification of transit time and dispersionthrough vasculature.

The flow rate derived from the concentration measure-ments validated the proposed QSI technique in vivo. Theagreement between QSI and PC was found to be approxi-mately 10%, which is similar to PC repeatability and typicalfor cardiac output quantification techniques.37 QSI repeat-ability was slightly better than PC � 5% �, but this differ-ence was not significant due to the limited number of sub-jects. In this study, cardiac flow rate was measured with QSIwith a single injected dose. In delayed-enhancement viabilitystudies,41 where CA is administered to the patient and noimaging is performed until about 10 min after injection, thedeveloped single breath-hold QSI sequence could be incor-porated to obtain cardiac output information traditionally ob-tained with PC and cine SSFP sequences.42 Furthermore,timing parameters and analysis of the dispersion curve mayprovide useful clinical information for perfusion studies, as

5,8

emphasized in dynamic studies.

Medical Physics, Vol. 35, No. 12, December 2008

CA enhancement of blood and tissue signals is generallyevaluated qualitatively because of the complex relationshipbetween changes in the MR signal and changes in CA con-centration due to T1 and T

2* relaxation, inflow effects and

system calibration. Assessing accurate AIF measurementwith MRI has always been a great challenge in many func-tional studies for perfusion measurement of the kidney,4,43

liver,18,44 lung,45 brain,5,46 and heart.21,47 Induced signalchanges are complex because they combine T1 signal en-hancement as well as T2 and T

2* decays. Although simple

models and phantom experiments in uniform media link re-laxation rates to concentration, the signal changes also de-pend on scan parameters47 and are not linear in the generalcase.5,21,44,45,48,49 The problem is further complicated whenpartial voxels5,49 including multiple compartments4 are en-countered in the kidney, liver, or small vessels in the heart orbrain, which may contain a very high CA concentration andchange of relaxivity with macromolecular content.10 In afairly homogeneous organ, signal changes can be linearwhen low doses4,43,45 and adapted acquisition parameters areused which assume valid simplified models that either ne-glect T1 or T

2* effects. Some studies reported a linear rela-

tionship of R2* with concentration,21,43,44,48 while others re-

ported a quadratic49 relationship. The large number of studieson this topic suggests that each approach has its range ofvalidity for a given organ of interest, injection protocol, andset of acquisition parameters. The QSI approach presentedhere is based on geometrical and functional models and a fitto the magnetic field shifts, which is conceptually different inprinciple than previous T1 or T

2* based CA concentration

measurement techniques. By using the signal phase insteadof intensity, QSI is intrinsically insensitive to signal intensityvariation and relaxivity change and leads to improved ro-bustness. This approach also offers the opportunity for morequantitative analysis of CA signal enhancement, as shownhere by the in vivo comparison of signal enhancement andCA concentration measured with QSI. For perfusion mea-surements following contrast injection4 in which similar geo-metrical segmentation is performed to analyze the signal am-plitude, the QSI method may be useful in quantifying AIF inlarge vessels and CA in organs for pharmacokinetic model-ing and functional characterization. Furthermore, this ap-proach could be applied similarly with different CA witharbitrary relaxivities. A straight forward application of thistechnique could be done using bolus-injectable ultrasmall su-perparamagnetic iron oxides50 for which molar susceptibilityis more efficient � 3600 ppm /M at 1.5 T�51 and doses are 2.5–10 times lower.50

VI. CONCLUSION

Contrast agent concentration can be quantified using thelinear susceptibility effects that modify the field measured onthe signal phase. However, for accurate and precise quanti-fication, a geometrical description of the object or organ isneeded as well as an adequate functional model that accountsfor the observed shifts. The geometrical description of the

organ or vessels allows a more detailed shape-factor descrip-
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5337 de Rochefort et al.: QSI for in vivo contrast agent concentration measurement 5337

tion for accurate conversion of phase shifts to concentrationand combination of multiple phase shift measurements formore precise concentration determination. During first passof a short CA bolus injection, field shifts can be isolated bysubtracting a precontrast reference scan. The shifts in theaortic arch were modeled fairly well with a single approxi-mate shape which allowed estimation of CA concentrationand the AIF. Cardiac flow rate could then be quantifiedin vivo leading to a practical tool that can be inserted into aperfusion cardiac protocol without increasing examinationtime. Relying on phase, the technique is insensitive to themultiple factors that affect signal intensity. Combined withmore sophisticated models, it may be possible to adapt theQSI methods to other sites for perfusion quantification.

APPENDIX A: MAGNETOSTATIC APPROXIMATIONOF MAXWELL EQUATIONS

From the magnetostatic macroscopic Maxwell equations,it follows that for a material placed in a main magnetic field

B0� =B0z�,27

�� · B� = 0, �A1�

�� � B� = �0�� � M� , �A2�

where B� is the magnetic field and M� the material magnetiza-

tion. Using the vector relationship for any vector field A� ;

�� � ��� � A� � = − �2A� + �� ��� · A� � , �A3�

and applying it to Eq. �A2�,

− �2B� = �0�− �2M� + �� ��� · M� �� . �A4�

Looking for harmonic solutions of the form B�

=1 / �2��3�b� exp�ik� ·r��d3k, we have

k2b� = �0�k2m� − k��k� · m� �� , �A5�

where k� is the Fourier domain position, b� is the Fourier trans-form of the local shifts, and m� is of the magnetization. InMRI, only the local field influences proton precession andmolecular demagnetization must be taken into account.52

This is the Lorentz-sphere correction which amounts to re-

moving 2 /3M� from the macroscopic field, or 2 /3m� in theFourier domain. This leads to the measurable shift

b� local = �01

3m� −

k�

k2k� · m� � . �A6�

Evaluating the Fourier integral of the previous expression,53

it comes

�B� local�r�� = B� local − B� 0

=�0

4��

r��r�3

M� �r��� · �r�� − r���r�� − r��2

��r�� − r�� − M� �r���� 1

� � 3d3r�. �A7�

�r� − r�

Medical Physics, Vol. 35, No. 12, December 2008

Since the magnetization is mainly aligned with the main

magnetic field B� 0=B0z�, components orthogonal to it can beneglected resulting in the following simplification for thecomponent along z measured with MR:

�Bz,local�r�� =�0

4��

r��r

Mz�r���3 · cos2��rr�� − 1

�r�� − r��3d3r�, �A8�

where �rr� denotes the angle between r��−r� and z�. In mostMRI experiments, the magnetization is much smaller thanthe polarizing field ��1, such that �0Mz=�B0 can be as-sumed leading to the linear problem given as a convolutionof the susceptibility distribution with a dipole field

�Bz,local�r�� = B0�r��r

��r���3 · cos2��rr�� − 1

4��r�� − r��3d3r�. �A9�

For an object defined by its geometry G �spatial mask ofunity inside the object and zero everywhere else�, with uni-form susceptibility �, the contribution to the field shifts canbe simplified as

�Bz,local�r�� = �B0�r��r

r��G

3 · cos2��rr�� − 1

4��r�� − r��3d3r�. �A10�

We refer to the integral in this expression that corresponds tothe convolution of a dipole field with the shape of the objectto as the shape factor F.54

APPENDIX B: FIELD CALCULATION BASED ON ASURFACE INTEGRAL

Equation �A7� can be transformed as follows:27,53

�B� local�r�� = �0M� �r��

3−

�0

4�����

r�0��� ·

M� �r����r�� − r��

−��� · M� �r���

�r�� − r��d3r�� , �B1�

which, in case of a constant distribution contained within theclosed surface Si of a compact object Gi and oriented alongthe main magnetic field, and 0 elsewhere, can be evaluated as

�B� local�r�� = �0M� z�

3−

1

4����

Si

z� · da��

�r�� − r���� . �B2�

The field shifts for the component along the main magneticfield can then be calculated. For a given object i described bya triangular surface mesh �K triangles forming a closed sur-face�, the unit field deformation along z� is given by26,55

F�r�� =1

4� 1

3��r�� + �

k=1

k=K

z� · nk� ��k�r��nk

� + �k� �r�� � nk

� � · z�� ,

�B3�

where nk� is the normal to triangle k, �k�r�� is the solid angle

of triangle k subtended at point r� �the surface area of the

projection of the triangle over a sphere of unit radius cen-
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5338 de Rochefort et al.: QSI for in vivo contrast agent concentration measurement 5338

tered at point r��, ��r��= �k=1

k=K

�k�r�� is the solid angle of the

closed surface subtended at point r� �its value is 4� if thepoint is inside the surface and 0 if outside�.

If xi� , i=1,2 ,3 are the coordinates of the triangle k verti-

ces, the normal can be calculated via

vivo results,” Magn. Reson. Med. 55�3�, 514–523 �2006�.

Medical Physics, Vol. 35, No. 12, December 2008

n� =x1� � x2

� + x2� � x3

� + x3� � x1

�x1� � x2

� + x2� � x3

� + x3� � x1

� �. �B4�

With yi� =xi

� −r�, i=1,2 ,3, the solid angle of the triangle ksubtended at point r� is given by

�k�r�� = 2 arctan y1� · y2

� � y3�

�y1� ��y2

� ��y3� � + �y1

� �y2� · y3

� + �y2� �y3

� · y1� + �y3

� �y1� · y2

� � . �B5�

Finally, the vector �k� �r�� is given by

�k� �r�� = �

i=1

i=3

��i−1 − �i�yi� , �B6�

with

�i =− 1

�yi+1� − yi

� �ln� �yi

� ��yi+1� − yi

� � + yi� · �yi+1

� − yi� �

�yi+1� ��yi+1

� − yi� � + yi+1

� · �yi+1� − yi

� �� ,

�B7�

where subscripts are given modulo 3 to simplify the expres-sions.

These expressions were given in Ref. 26 and are modifiedto include the Lorentz-sphere correction. We noticed a typoerror in the previously cited paper;26 Eq. �B-6� was copiedfrom Ref. 55 instead. As stated by the author, this method isan explicit expression of the field shift in the case ��1. Inthis method, the computation time is proportional to thenumber of triangles and to the number of points where thefield needs to be calculated. The computation time can thusbe reduced if the surface mesh is optimized as the accuracydoes not depend on the mesh size, and triangles that areparallel to the main magnetic field can be removed as they do

not contribute to the sum �z� ·nk� =0�.

a�Telephone: 212-746-6880; Fax: 212-752-8908. Electronic mail:[email protected]

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