how imarine fulfils data needs in support of the ecosystem approach (ea)
DESCRIPTION
Presentation Pasquale Pagano, CNR-ISTI, iMarine Technical Director on the services provided through the iMarine data e-infrastructureTRANSCRIPT
![Page 1: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/1.jpg)
How iMarine fulfils data needs in support of the Ecosystem Approach
Introduction
Pasquale Pagano (CNR) iMarine Technical Director pasquale.pagano@is<.cnr.it
From collabora<on to market and future growth 29th September 2014
Brussels, Belgium
![Page 2: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/2.jpg)
iMarine
iMarine exploits a Hybrid Data Infrastructure by • combining over 500 soLware components • providing access to more than 25k datasets • serving more than 1000 jobs a day
iMarine capaci<es are offered as services
European Commission premises, DG CONNECT, 29th September 2014, Brussels
![Page 3: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/3.jpg)
Data Compu<ng Applica<ons
European Commission premises, DG CONNECT, 29th September 2014, Brussels
iMarine Capaci<es
![Page 4: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/4.jpg)
Data: Storage as Service
European Commission premises, DG CONNECT, 29th September 2014, Brussels
to host and maintain data
Database High-‐availability
Standard Ready-‐to-‐use
Cloud Storage Scalable Reliable Secure
Geographical DB Scalable
OGC Standard Privacy and A<ribu=on
![Page 5: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/5.jpg)
Data: Applica<ons as a Service
European Commission premises, DG CONNECT, 29th September 2014, Brussels
to curate and manage data
Metadata Genera@on Geospa=al Data Biodiversity Data Sta=s=cal Data
Harmoniza@on Disambiguate
Validate Integrate and Consistency Check
Data Exchange OGC protocols DarwinCore
SDMX
![Page 6: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/6.jpg)
iMarine
OBIS WoRMS
WoRDS
GBIF
CoL
ITIS
IRMNG NCBI
MyOcean
WOA
EuroStat
Data.FAO
…
Data
European Commission premises, DG CONNECT, 29th September 2014, Brussels
iMarine Registries
Valida<on
Enriching
Processing
Sharing
![Page 7: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/7.jpg)
Data
Ontologies and Data
Warehouses
Biological and
Ecological Data
GeoSpa<al Data
Sta<s<cal Data
Documents
European Commission premises, DG CONNECT, 29th September 2014, Brussels
DarwinCore / ISO19139 >35 M Observa<ons (OBIS) ≈ 120 K Observed Species (OBIS) ≈ 500 K Taxa (WoRMS) >600 K Scien<fic Names (ITIS) >12 K Species Maps (AquaMaps) ≈ 600 Species Extent (FAO) … FishBase, SeaLifeBase … CoL, GBIF
SDMX * Ø FAO CodeLists Ø IRD CodeLists Ø FAO datasets Ø Eurostat Ø …
ISO19139 (OGC W*S) Ø 10 years Chemical and Physical variables in 2D space
Ø Ice concentra<on and velocity, Chlorophyll, Oxygen, Nitrate, Phosphate, Phytoplankton as carbon, Salinity, Temperature, …
Ø On-‐demand Chemical and Physical variables in 3D space Ø Apparent Oxygen U<liza<on, Dissolved Oxygen, Salinity, Temperature, …
> 350
varia
bles
OAI-‐PMH, OpenSearch Ø FAO Facksheets Ø Aqua<c Commons Ø Bioline Interna<onal Ø Biodiversity Heritage Ø OceanDocs Ø Nature, PenSoL
Journals Ø …
RDF, OWL Ø FAO FLOD Ø Marine Top Level Ontology Ø IRD Ecoscope Ø FactForge, Yago2 Ø …
![Page 8: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/8.jpg)
Capaci<es: Compu<ng as Service
European Commission premises, DG CONNECT, 29th September 2014, Brussels
to process and extract knowledge
Scalable Easy to Manage Across Boundaries
Tailored
Elas@c Assignment of Compu=ng Assignment of Processors
Virtual Research Environment
Rich and Heterogeneous High Throughput Map-‐Reduce Parallel R
![Page 9: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/9.jpg)
Capaci<es: Compu<ng as Service
European Commission premises, DG CONNECT, 29th September 2014, Brussels
![Page 10: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/10.jpg)
Management and interpreta<on of biological and ecological data in the environment
Complete full life-‐cycle data framework, from observa<onal data to aggregated data repositories enriched with valida<on and analy<cal tools
Storage and interpreta<on of geospa<al explicit informa<on, including WPS processing
Flexible sharing, storage, repor<ng, search and retrieval, aggrega<on and projec<on facili<es
Applica<ons as a Service
European Commission premises, DG CONNECT, 29th September 2014, Brussels
A BUNDLE is a set of
services and technologies grouped
according to a family of related tasks for
achieving a common objec<ve
![Page 11: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/11.jpg)
Occurrence and Taxonomic Data Discovery Occurrence Data Processing Species Distribu<on Modeling Species Distribu<on Maps Discovery Taxonomic Data Comparison Taxonomic Data Matching
Code List Discovery Code List Management Sta<s<cal Engine Tabular Data Discovery Tabular Data Enrichment Tabular Data Management Tabular Data Processing
Geospa<al Data Discovery Geospa<al Data Processing
Enhanced Documents Management Fact-‐sheets Management Informa<on Object Discovery Messaging Shared Workspace Social Networking Facili<es
Applica<ons as a Service
European Commission premises, DG CONNECT, 29th September 2014, Brussels
A BUNDLE is a set of
services and technologies grouped
according to a family of related tasks for
achieving a common objec<ve
![Page 12: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/12.jpg)
European Commission premises, DG CONNECT, 29th September 2014, Brussels
Presence Points
(FishBase +
Obis)
Density Based Clustering DBSCAN
(with outliers)
Other methods are also available …
K-‐Means
X-‐Means
Features Clustering with StatsCube
![Page 13: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/13.jpg)
Data Analysis with StatsCube Import
CodeLists
Validate Datasets
Analyse And
Project
European Commission premises, DG CONNECT, 29th September 2014, Brussels
![Page 14: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/14.jpg)
Ecological Modeling with BiolCube
European Commission premises, DG CONNECT, 29th September 2014, Brussels
![Page 15: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/15.jpg)
VS
FAO Eleutheronema tetradactylum
AquaMaps Eleutheronema tetradactylum
Maps Comparison with GeosCube
MEAN=0.81 VARIANCE=0.02 NUMBER_OF_ERRORS=6691 NUMBER_OF_COMPARISONS=259200 ACCURACY=97.42 MAXIMUM_ERROR=1.0 MAXIMUM_ERROR_POINT=3005:363:1 COHENS_KAPPA=0.218 COHENS_KAPPA_CLASSIFICATION_LANDIS_KOCH=Fair COHENS_KAPPA_CLASSIFICATION_FLEISS=Marginal TREND=EXPANSION RESOLUTION=0.5
European Commission premises, DG CONNECT, 29th September 2014, Brussels
![Page 16: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/16.jpg)
Virtual Research Environment
European Commission premises, DG CONNECT, 29th September 2014, Brussels
to share and collaborate
Share Database Tables
Workflow Files
Communicate Post
Favourite Connec=on
Organize Dynamic VRE Crea=on
Secure Policy Control
![Page 17: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/17.jpg)
iMarine Technology
• iMarine is powered by gCube
European Commission premises, DG CONNECT, 29th September 2014, Brussels
hnps://www.openhub.net/p/gCube
![Page 18: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/18.jpg)
iMarine e-‐infrastructure
iMarine is exploi<ng D4Science.org
European Commission premises, DG CONNECT, 29th September 2014, Brussels
Geographically Distributed Compu<ng
Infrastructure
Across administra<ve boundaries
Across private and commercial
providers
Service Alloca<ons, Deployment,
Monitoring, and Opera<on
Uniform resource and data access
Opera<on Built on SLAs
Support monitoring, audi<ng, repor<ng, and no<fica<on
Trust Privacy, governance, and anribu<on
Security, trusted network
![Page 19: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/19.jpg)
Mul<-‐tenant Delivery Model
Infrastructure as a Service
• Dynamic deployment • Hos<ng • Resource Lifecycle • Monitoring • Accoun<ng • Security
SoLware as a Service
• BiolCube • ConnectCube • GeosCube • StatsCube
Plaqorm as a Service
• FeatherWeightStack • SmartGears • Applica<onSupportLayer • SOA3
European Commission premises, DG CONNECT, 29th September 2014, Brussels
![Page 20: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/20.jpg)
Landscape
D4Science e-‐Infrastructure
gCube Framework
gCube Apps
Discussion
www.i-‐marine.eu
i-‐marine.d4science.org
European Commission premises, DG CONNECT, 29th September 2014, Brussels
Thank You
![Page 21: How iMarine fulfils data needs in support of the Ecosystem Approach (EA)](https://reader033.vdocuments.us/reader033/viewer/2022060122/5595dfa31a28ab574b8b4592/html5/thumbnails/21.jpg)
Google Analy<cs iMarine portal
European Commission premises, DG CONNECT, 29th September 2014, Brussels