epidemiological surveillance of herpesvirus encephalitis in cordoba, colombia salim mattar, german...
TRANSCRIPT
EPIDEMIOLOGICAL SURVEILLANCE OF HERPESVIRUS ENCEPHALITIS IN CORDOBA, COLOMBIA
SALIM MATTAR, GERMAN ARRIETA, VANEZA TIQUE, FRANCISCO CAMARGO, LUIZ TADEU.
UNIVERSITY OF CÓRDOBA, BIOLOGICAL RESEARCH INSTITUTE OF THE TROPICS
INTRODUCTION Taxonomy
INTRODUCTION Commun diseases
Murray et al.,2009; Goering et al., 2008
oral and genital Herpes HSV1-2Varicella and herpes zoster
VZV
Rash maculopapular in roseola infantum VHH6
Viral infections are the main causes of CNS infection in the world.
Encephalitis is an inflammatory process in the brain in association with clinical evidence of neurologic dysfunction. Herpes simplex encephalitis is recognized worldwide as the most common infectious encephalitis.
INTRODUCTION
The brain T2 fluid-attenuated inversion recovery with typical findings for herpes simplex virus encephalitis, which shows a hypertense signal in left temporal lobe (arrow).
To establish an epidemiological surveillance of herpes encephalitis in major hospitals of Monteria, Cordoba.
OBJETIVE
Type of study: A longitudinal descriptive study on meningoencephalitis cases between 2009 to 2011 of Monteria city was performed.
Study area: Study was conducted at the San Jerónimo Monteria Hospital
METHODOLOGY
METHODOLOGY
Target population:
Aprox 1,5 million people of the department of Córdoba and 500.000 inhabitants in the capital, Monteria.
METHODOLOGY
Ethics aspectsThe study was approved by the ethics committee of the Institute for Tropical Biological Research of the University of Cordoba, according of procedures, Ministry of Health of Colombia.
METHODOLOGY
Patients and CSF samples (n=265)
Inclusion: fever, headache, seizures and signs of brain damage such as altered consciousness and/or personality and/or focal neurological signs were included in the study. Most patients had an increased cell count and/or an increased protein level in CSF.
Exclusion: Patients with microorganisms (bacteria and/or fungi) detected by direct examination, KOH, China ink, Gram stain, Ziehl Neelsen and positive culture of CSF.
METHODOLOGY
METHODOLOGYPCR
Pool the primers (1+) 10 µl the primer (HSV1+)10 µl the primer (VZV1+)10 µl the primer (CMV1+)10 µl thee primer (EBV1+) 60 µl ultra pure water free of RNase and Dnase).
Mix PCR.5.0 µl Buffer 10X 4.0 µl MgCl2 (50 mM) 1.5 µl mix dNTPs (10mM)2.5 µl Pool the primers (1+)2.5 µl Pool the primers (1-)0.3 µl Taq ADN Polimerase recombinante (Invitrogen Cat 10342053) (5U/ µl) 29.2 µl ultra pure water
Thermocycler conditions :•94ºC x 2 min (35 ciclos)•94°C x 1 min•55 °C x 1 min •72°C x 1 min•Final extensión 72°C x 4 min
1° round
5 µl ADN samples
Pool the primers (1-) 10 µl the primer (HSV1-)10 µl the primer (VZV1-)10 µl the primer (CMV1-)10 µl the primer (EBV1-) 60 µl ultra pure water free of RNase and Dnase).
Pool the primers (2+) 10 µl the primer (HSV2+)10 µl the primer (VZV2+)10 µl the primer (CMV2+)10 µl the primer (EBV2+) 60 µl ultra pure water free of RNase and Dnase).
Mix PCR.5.0 µl Buffer 10X 4.0 µl MgCl2 (50 mM) 1.5 µl mix dNTPs (10mM)2.5 µl Pool the primers (2+)2.5 µl Pool the primers (2-)0.3 µl Taq DNA Polimerase recombinante (Invitrogen Cat 10342053) (5U/ µl) 33.2 µl ultra pure water
•Thermocycler conditions:•94ºC x 2 min (35 ciclos)•94°C x 1 min•49°C x 1 min •72°C x 1 min•Final extensión 72°C x 4 min
2° round
1 µl PCR product 1er round
Pool the primers (2-) 10 µl the primer (HSV2-)10 µl the primer (VZV2-)10 µl the primer (CMV2-)10 µl the primer (EBV2-) 60 µl ultra pure water free of RNase and Dnase).
Quality control100, 50 y 25 pb DNA Ladder
(Promega. Madinson, WI, USA); OptiQual High Positive Control
ACROMETRIX (CMV, EBV, HSV-1, HSV-2); VZV (DNA extracted from lesions in
a patient with chickenpox)
• Agarose gel 3.0 %
(NuSieve TM 3:1) in
buffered TBE, run at 100
volts x 60 min.
• Photography
AGAROSE GEL ELECTROPHORESIS
SEQUENCING PCR PRODUCTS
MEGA versión 5.22 comparing known sequencies in GenBank
RESULTS AND DISCUSSION
Distribution of patients by gender and age
RESULTS AND DISCUSSION
Imaging studies n %
Computed Axial tomography (CAT)
136 51.32
Magnetic resonance (MRN) 52 19.62
Treatment
Antibiotics 177 66.79
Corticoids (dexametazone) 44 16.60
Antivirals (aciclovir) 12 4.53
Underlying disease
Non-disease. 160 60.38
Congenital or acquired hydrocephalus peritoneal shunt valve or craniotomy.
39 14.72
VIH-AIDS. 32 12
Preterm neonate (n=14);Syphilis (n=7)diabetes (n=4);hypertension (n=9)
7 2.64
Evolution
Positive outcome 228 86.04
Mortality 32 12.08
Sequele
Yes 29 11
no 236 89
Imaging studies n %
Computed Axial tomography (CAT)
32 56
Magnetic resonance (MRN) 12 21
Treatment
Antibiotics 41 72
Corticoids (dexametazone) 11 19
Antivirals (aciclovir) 5 9
Underlying disease
Non-disease. 31 54
Congenital or acquired hydrocephalus peritoneal shunt valve or craniotomy.
7 12
VIH-AIDS. 12 21
Preterm neonate (n=4);Syphilis (n=1)diabetes (n=1);hypertension (n=1)
7 10
Evolution
Positive outcome 49 86
Mortality 6 10
Sequele
Yes 7 13
No 50 87
Patients with herpesvirusTotal patients
RESULTS AND DISCUSSIONclinical manifestations in patients with viral
detection
Clin
ical m
anif
est
ati
on
s
Positive Population (%)
RESULTAS AND DISCUSSION CSF’S characteristic in studied patients
Characteristics
CFS
Negative patients
(n=208)
Patients with viral detection
(n=57)
Glucose (mg/dL) 52.7 +34.1 (0-274)* 46.9 +27.2 (4-140)
Proteins (mg/dL) 71.7 +95.7 (0-829)
118.
5
+155.
1 (13.1 - 851.4)
Leukocytes (mm3) 51.5
+166.
5 (0-1750) 50.4
+124.
5 (0-680)
Polymorphonuclear
(%) 53.8
+124.
1 (0-860) 74.0
+156.
2 (0-670)
Mononuclear (%) 9.48 +23.9 (0-100)
16.7
7 +32 (0-99)
Erythrocytes (mm3) 54.4 +46.9 (0-100) 44.6 +46 (0-100)
Crenate (%) 16 +30.7 (0-100) 13.4 +29.3 (0-100)
Intact (%) 57.4 +45.2 (0-100) 48 +47.1 (0-100)
*Media + standard deviation (range).
RESULTS AND DISCUSSIONDetection of viral DNA herpesvirus in CFS
Virus N° negative
(%)
N° positive (%) CI (%)
HSV 1-2 218 (82,2) 47 (17.6) 13 – 22
CMV 258 (97.3) 7 (2.6) 0.69 - 4.5
VZV 261 (98.4) 4 (1.5) 0.031 - 2.9
EBV 263 (99.2) 2 (0.75) 0.0 - 1.8
208 (78.4) 57(21.5) 16.5 - 26.4
CI: Confidence interval (95%). CI: Confidence interval (95%).
ADULTS POPULATION
BRAZILn=200(12%)6% CM , 5%
VHS1 0.5% VEB Y VVZ
11.3% EV
EV/CM-HSV1/CMV
BRAZIL n=17 (76.4%)17.6% VHS1
5.8% CM , 5.8% EV
47% dengue VHS1/VHS2
TAIWAN n=131(25 cases
33%VHS1 50% VVZ17% CMV
8% EV*, 4%VHS2*, 64%VEB*
TAIWAN n=25
8% VHS1, 8%VHS2
M.pneumoniae (2)
ROMA n=155(33.5%)
30.9% VVZ, 27.9% VHS1 13.9% VEB Y 9.3% VHS2 y
VHH6VVZ/VHS1
VHS1/VHS2 –VHS2/VEB
NEW ZELAND n=411(9%)
27% VVZ , 11% VHS
3% EV65% No- identified
14% Mortality
UKn=787(12%)
VHS1, CMV,VEB, VHS1/VEB,
VHS2/EV,VEB/VHH6, VEB/CMV
PEDIATRIC POPULATION
CHILE Izquierdo et al., 2012 case EBV
in neonate.
FINLANDMartelius et al.,
2011 n= 322, 9.9% EBV47% other clinical
suspects.
FRANCIAN=253
EBV 2.3%(1case confirmed and 2
probablies)
M 1 2 3 4 5 6 7 8 9 10 11 12 13 M
120 Pb98 Pb78 Pb54 Pb
Lanes 1-4: positivos controls EBV (54pb), CMV (78pb), VZV (98pb) HSV1-2 (120pb).
Lanes 5 and 9 negatives controls.
lanes 6-8,10-12 positives CSF EBV (54pb), CMV (78pb), VVZ (98pb); HSV1-2 (120pb).
Lane M, 50-100 pbLadder.
RESULTS AND DISCUSSIONAgarose gel showing amplicons obtained by multiplex-PCR
for herpesvirus
120 Pb98 Pb78 Pb
M 1 2 3 4 5 6 M
Lanes 1- 3: positive controls VHS1-2(120pb),VVZ (98pb) CMV (78pb).
lane 4: infected patient CMV (78pb + HSV1-2 (120pb)
lane 5: negative control lane 6: infected patient VZV (98pb) + VHS1-2 (120pb).
Lane M : DNA ladder
RESULTS AND DISCUSSIONCo-infections
VHS2 6 TTGTGCCGCGGTCTCACGGCCGCGGGCCTGGTGGCCATGGGCGACAAGA-GGCGAGCCAC 64
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2701 TTGTGCCGCGGCCTCACGGCCGCGGGCCTGGTGGCCATGGGCGACAAGATGGCGAGCCAC 2760
VHS2 65 AT-TCGCGCGC 74
|| ||||||||
Sbjct 2761 ATCTCGCGCGC 2771
PATIENT VHS 2dentity: 68/71 (96%)
acces number JX905318.1 Genbank).
RESULTS AND DISCUSSIONSequency results
EBV 1 CACACGTGTGACATTGCTTGCCTTTTTGCCACATGTTTTCTGGACACAGGACTAACCATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 CACACGTGTGACATTGCTTGCCTTTTTGCCACATGTTTTCTGGACACAGGACTAACCATG 854
EBV 61 CCATCTCTGATTATAGCTCTGGCACTGCTAGCGTCACTGATTTTGGGCACACTTAACTTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 CCATCTCTGATTATAGCTCTGGCACTGCTAGCGTCACTGATTTTGGGCACACTTAACTTG 914
EBV 121 ACTACAATGTTCCTTCTCAT 140
||||||||||||||||||||
Sbjct 915 ACTACAATGTTCCTTCTCAT 934
PATIENT EBV Identity: 140/140 (100%)
acces number KC617875.1 Genbank)
CMV 1 GCAACGTTATGATATCTACAGCAGATACATGCGTCGTATGCCGCCACTTTGCATCATTAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 GCAACGTTATGATATCTACAGCAGATACATGCGTCGTATGCCGCCACTTTGCATCATTAC 1324
CMV 61 AGACGCCTATAAAGAAACCACGCGTCAGGGTGGCGCAACTTTCACGTGCACGCGCCAAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 AGACGCCTATAAAGAAACCACGCGTCAGGGTGGCGCAACTTTCACGTGCACGCGCCAAAA 1384
CMV 121 TCTCACGCTGTACAATCTTACGGTTAAAGATACGGGAGTCTACCTTCTACAGGATCAGTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 TCTCACGCTGTACAATCTTACGGTTAAAGATACGGGAGTCTACCTTCTACAGGATCAGTA 1444
CMV 181 TACCGGCGATGTCGAGGCTTTCTACC 206
||||||||||||||||||||||||||
Sbjct1445 TACCGGCGATGTCGAGGCTTTCTACC 1470
RESULTS AND DISCUSSION
Sequency results
PATIENT CMVIdentity: 206/206(100%) acces number JN048117.1
Genbank).
VVZ 18 AAAAATATACCCGATTATACTCGGATGTTGTAAGTCCCAGTCTCTTATAATCGGTAAGAC 77
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9833 AAAAATATAAGCGTTTATACTCGGATGTTGTAAGTCCCAGTCTCTTATAATCGGTAAGAC 9892
VVZ 78 AATTTTTATAAATTCATTCCTTTTTAAATATAGGTTATATGGTACACAAATATCATATCC 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9893 AATTTTTATAAATTCATTCCTTTTTAAATATAGGTTATATGGTACACAAATATCATATCC 9952
VVZ 138 CGCGTCTTCTTGGCGTTTTGGATTGATGATATGTTTGTAGGTTAAGGGAACATCGATATG 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9953 CGCGTCTTCTTGGCGTTTTGGATTGATGATATGTTTGTAGGTTAAGGGAACATCGATATG 10012
VVZ 198 GTATTC 203
||||||
Sbjct 10013 GTATTC 10018
PATIENT VZVIdentity: 183/186(98%)
acces number KF558391.1Genbank).
RESULTS AND DISCUSSION HIV patients
The incidence of 22% established in this study between 2009-2011 for herpesvirus encephalitis are the first result of surveillance cases in adult and pediatric patients in the department of Córdoba and in the country.
The principal member of the herpesvirus family associated with encephalitis in the department of Córdoba was herpes simplex virus 1 and 2.
CONCLUSIONS
Mortality of encephalitis was of 10.5% (6/57) and neurological sequelae were: 12.2% (7/57). The data suggest the need for active surveillance and follow the cases.It is important to find out the incidence of other virus, like arbovirus.
CONCLUSIONS (cont)
ACKNOWLEDGEMENTS