electrophoresis defined as the migration of charged particles through a solution under the influence...
TRANSCRIPT
Electrophoresis
• Defined as the migration of charged particles through a solution under the influence of an electric field.
• Many important biological molecules possess ionisable groups– e.g. amino acids, peptides, proteins,
nucleotides, nucleic acids• So, at a given pH they exist in solution as
electrically charged species either as cations (+) or anions (-).
• If an electric field is applied charged particles will either migrate to the cathode or anode depending upon their charge.
Electrophoresis
Equipment for electrophoresis is a power pack and an electrophoresis unit (gel tank) – either vertical or horizontal.
Images from Anachem Ltd
Methodology of SDS-PAGE gels
Polyacrylamide Gels (i.e. SDS-PAGE)* Stacking gel (4.5%)
– Stacks all the polypeptides into a narrow band – Allows all the polypeptides to enter the separating gel at the same time
* Separating gel (10-12%)– Separates the various polypeptides based on their molecular weight– The smaller the polypeptides the faster it will migrate
• The smaller the polypeptides size, the higher acrylamide concentration needed to properly separate.
* Otherwise, the small proteins would just race through the gel matrix with no quantitative results for classifying polypeptides.
* The best concentration for particular size ranges has thankfully been determined by previous scientists.
Gels for Separating Proteins
Using a stacking gel
low percentacrylamide (4%)
Resolution of good bands in resolving gel relies on all the sample entering the gel at the same time
Molecular Weight Standards1. Mixture of polypeptides of known molecular
weights2. Helps to determine the molecular weight of
an unknown polypeptide3. Does not tell you what proteins or
polypeptides are in your sample(a) Because two proteins have the same molecular weight does not mean they are the same protein(b) May be hundreds of different proteins with the same molecular weight
Sample preparation for SDS-PAGE
Mixture is heated in a boiling water bath for a few minutes to denature the proteins
Protein samples are suspended in a buffer solutioncontaining SDS, -mercaptoethanol, glycerol and a
tracking dye
(a) Must have excess SDS (at least 3:1 ratio)
(b) Must have excess reducing agent
Even when you take all precautions you must still be carefulwhen interpreting your results
SDS-Page
Loading the gel Connecting to the power supply