biovariance pharma patents in biological pathways
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BioVariance Research Services
Josef Scheiber, PhDwww.biovariance.com
http://www.biovariance.com/http://www.biovariance.com/ -
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BioVariance - Overview
Two distinct offerings rooted in the same data:
Medical value content-as-a-Service for Healthcare
Bio-Variance
BaVarians ;)
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Overview
Background
Analysis approach
Example Outlook
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Background
Patents hold a significant amount of recent,highly relevant information
Question to answer: What targets do my
competitors publish patents for? What indicationare they working on for a particular target?
How can I use this for my efforts?
We aim for that areby data from scientific databases andthe literature
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Recent competitor patents provideplenty of relevant knowledge
Patent
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Leveraging competitor information forbetter drug understanding
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General workflow
Patents published
in 2011
Standard identifiers for basic content
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General workflow
Patents published
in 2011Patents published
in 2011
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Statistics of targets in patents
Pharma A 41 unique ID Targets, 7 of them with several patent Pharma B 36 unique ID Targets, 16 of them with several patents
(Q9UBL9; P04150; P30559;P07550; P10275; Q9Y5N1)
A BPharma A (2010) Pharma B (2011)
Total patents published (for specified year) 83 103
Relevant patents 75 76
35
6
30
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Comparison of indicationson target-level
P04150Treatment of inflammation and/or allergic conditions., Treatment of
inflammatory and/or allergic conditions.
Treatment of inflammation related condition (e.g. asthma,
rheumatoid arthritis, dermatitis, inflammatory bowel disease,
transplant rejection, multiple sclerosis, chronic uveitis, or chronic
obstructive pulmonary disease); mitigating bone loss associated with
prednisolone treatment., Treatment of inflammation related condition
(e.g. asthma, rheumatoid arthritis, dermatitis, inflammatory bowel
disease, transplant rejection, multiple sclerosis, chronic uveitis, or
chronic obstructive pulmonary disease); mitigating bone lossassociated with prednisolone treatment.
P07550
Treatment of pulmonary disorders, e.g. chronic obstructive
pulmonary disease (COPD) and asthma., Treatment and prophylaxis of
diseases associated with reversible airways obstruction such as
asthma, chronic obstructive pulmonary diseases (COPD) (e.g. chronic
and wheezy bronchitis, emphysema), respiratory tract infection and
upper respiratory tract disease (e.g. rhinitis, including seasonal and
allergic rhinitis), premature labour, depression, congestive heart
failure, skin diseases (e.g. inflammatory, allergic, psoriatic, and
proliferative skin diseases), conditions where lowering peptic acidity
is desirable (e.g. peptic and gastric ulceration) and muscle wasting
disease.
Treatment of premature labor, congestive heart failure, depression,
inflammatory and allergic skin diseases, psoriasis, proliferative skin
diseases, glaucoma and in conditions where there is an advantage in
lowering gastric acidity, particularly in gastric and peptic ulceration,
chronic bronchitis and emphysema., Treatment of premature labor,
congestive heart failure, depression, inflammatory and allergic skin
diseases, psoriasis, proliferative skin diseases, glaucoma and inconditions where there is an advantage in lowering gastric acidity,
particularly in gastric and peptic ulceration, chronic bronchitis and
emphysema.
Opportunity?
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Mapping into biological Pathways(here: Nature Pathway Interaction Database)
Automated mapping of targetidentifiers into biological
pathways, each target can be a
member of several pathways
(exemplified with T2), thereby
one can link annotations from
competitor patents (likeindication) to the pathways of
own projects
Also a combined visualization is
possible
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Mapping into biological Pathways(here: Nature Pathway Interaction Database)
Pharma A: 41 unique IDs map into 116 Pathways, 64 of them with severaltargets (40% of pathways worked on covered by competitor)
Pharma B: 36 unique ID Targets map into 77 Pathways, 32 of these withseveral targets (61% of pathways worked on covered by competitor)
47 Pathways where both have patents (see next slide for example)
A B
69
47
30
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(in total 47 matching pathways)Pathway Indication Patent Company A Indication Patent Company B
angiopoietinreceptor_pathway
Treatment of rheumatoid arthritis, osteoarthritis, meningitis,
ischemic and hemorrhagic stroke, neurotrauma/closed head
injury, stroke, endotoxemia and/or toxic shock syndrome,
other acute or chronic inflammatory disease states such as
the inflammatory reaction induced by endotoxin or
inflammatory bowel disease, tuberculosis, atherosclerosis,
muscle degeneration, multiple sclerosis, cachexia, bone
resorption, psoriatic arthritis, Reiter's syndrome, gout,
traumatic arthritis, rubella arthritis and acute synovitis.
Treatment of cancer.
ap1_pathway Treatment of inflammation and/or allergic conditions.,
Treatment of inflammatory disorders, autoimmune disorders (e.g., lupus), skin-
inflammatory disorders, intestinal inflammatory disorders, asthma and atopic
disorders, and transplant graft rejection, neurological disorders or complications
due to stroke or head injury, benign or malignant neoplastic disease, carcinomas
and adenocarcinoma and proliferative disorders., Treatment of inflammation
related condition (e.g. asthma, rheumatoid arthritis, dermatitis, inflammatory
bowel disease, transplant rejection, multiple sclerosis, chronic uveitis, or chronic
obstructive pulmonary disease); mitigating bone loss associated withprednisolone treatment., Treatment of inflammatory disorders, autoimmune
disorders (e.g., lupus), skin-inflammatory disorders, intestinal inflammatory
disorders, asthma and atopic disorders, and transplant graft rejection,
neurological disorders or complications due to stroke or head injury, benign or
malignant neoplastic disease, carcinomas and adenocarcinoma and proliferative
disorders., Treatment of inflammation related condition (e.g. asthma, rheumatoid
arthritis, dermatitis, inflammatory bowel disease, transplant rejection, multiple
sclerosis, chronic uveitis, or chronic obstructive pulmonary disease); mitigating
bone loss associated with prednisolone treatment.
Opportunity?
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Outlook
We will further work on this!
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