biomosaic : mapping the intersection of migration, demography and emerging infectious disease
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BioMosaic : Mapping the intersection of migration, demography and emerging infectious disease. David Scales MD PhD Research Fellow, Children’s Hospital Boston. Traditional Public Health Reporting. Public. Healthcare workers, Clinicians. Public health practitioners. Local Officials. Labs. - PowerPoint PPT PresentationTRANSCRIPT
BioMosaic: Mapping the intersection of migration,
demography and emerging infectious disease
David Scales MD PhDResearch Fellow, Children’s Hospital Boston
Public
Public healthpractitioners
Local Officials Labs
Ministry of Health
World Bodies(UN, WHO, FAO, OIE)
Healthcare workers,Clinicians
Web-basedEpidemic
Intelligence
Traditional PublicHealth Reporting
2
1996 Year 1997
Year 1998
Year 1999
2000 Year 2001
Year 2002
Year 2003
2004 Year 2005
Year 2006
Year 2007
2008 Year 2009
0
50
100
150
200
Time from outbreak start to outbreak discovery
Year of Outbreak Start
Tim
e in
Day
s
167 days
20 days
3
AcquisitionOver 50,000 sites, every hour, 24/7 Seven languages – English, French, Spanish, Russian, Chinese, Portuguese, Arabic
HealthMap Article Processing1
Aravaging through two regions in northern since May…
Extraction> 600 alerts per day1800 disease patterns, 5000 locations
HealthMap Article Processing2
cholera outbreak
Cameroon
Categorization6 million phrases, 91% accuracy
HealthMap Article Processing3
Breaking News
Warning
Old News
Context
Not Disease Related
AggregationText matching, Similarity Score, Significance Rating
HealthMap Article Processing4
Breaking News
Warning
Old News
Context
Not Disease Related
BioMosaic: Focus
Demo-graphy
Migration
Foreignborn
Health
Why Foreign Born?• CDC Division of Global Migration and
Quarantine• Initially high infectious disease risk– Tuberculosis– Migration – visits to or visitors from home country– Rates of ID decline to native-born levels as length of
stay in US increases• Initially low chronic disease risk– Diabetes, obesity risk increases with US residence
Demography
• US Census – ACS 2005-2009• Foreign-born socio-economic variables– Population (by age, sex, country of birth)– Education– Income/poverty– Migration (Arrival in US, movement within US)– English speaking ability
• Geospatial queries
Migration
• International Air Transport Association data obtained by BioDiaspora– License restrictions limit public use
• Top US destinations receiving international arrivals– Sort to see which cities receive most people from
particular countries
Health
• HealthMap events– Infectious disease events reported by WHO,
ProMed, newspapers, user submissions– Updated every hour
• Choose by disease, timeframe, data source• Geospatial queries• Other health data – Tuberculosis, obesity, etc.
Use-Case Scenario
BioMosaic Prototype(s)
• Web application
• iPad application
BioMosaic: Team
• HealthMap– John Brownstein– Chris Mahlke– David Scales
• BioDiaspora– Rose Eckhardt– Kamran Kahn– Langhi Shen– Graham Smith
• CDC/DGMQ• Marty Cetron• Nancy Gallagher• Yoni Haber• Ginny Lee• Kevin Liske• Clelia Pezzi• Alfonso Rodriguez