animal physiology chapter 2 2nd half
TRANSCRIPT
Animal Physiology Chapter 2
Part 2
Enzymes Catalyze Rxns in Both Directions
The principles of mass action: if compounds are out of equilibrium, the rxn will proceed in the direction of equilibrium as dictated by the ratios of concentrations
A+B↔C+D rxn will proceed towards reactants with the
lowest concentrations
Enzymes Catalyze Rxns in Both Directions
The catalytic behavior of an enzyme may be different depending on which way the rxn proceeds due to the substrate affinity
In a cell a rxn might always proceed the same directions since substrates might be continually replaced
Enzymes Occur in Several Forms
The catalytic behavior of an enzyme may be different depending on which way the rxn proceeds due to the substrate affinity
In a cell a rxn might always proceed the same directions since substrates might be continually replaced
Isozymes and interspecific enzyme homologs
Isozymes: different enzyme forms in produced by a single species
Interspecific enzyme homologs: different enzyme forms from homologous gene loci in different species
May be functionally and catalytically different but they catalyze the same rxn may be adaptive differences
One species of the thornyhead rock fish lives at 500+m, one lives 500-1500m
Affinity of LDH to its substrate decreases with water pressure adapted a homolog of LDH that is less sensitive
Regulation of Cell Function by Enzymes: metabolic pathways
in a cell require enzymes
1. Types and amounts of enzymes present determine which metabolic pathways are fxn’l in a cell
2. The catalytic activities of the enzymes present can be modulated to affect cellular metabolic pathways
Regulating Enzymes Present by Gene Expression
1. Transcription of DNA coding for an enzyme to form pre-messenger RNA
2. Posttranscriptional processing to form mature mRNA
3. Exit of the mRNA from the nucleus to the ribosomes
4. Translation of the mRNA into a.a.’s 5. Posttranslational processing of a.a.’s to a
mature protein
Regulating Enzymes Present by Gene Expression
1. Transcription of DNA coding for an enzyme to form pre-messenger RNA
2. Posttranscriptional processing to form mature mRNA
3. Exit of the mRNA from the nucleus to the ribosomes
4. Translation of the mRNA into a.a.’s 5. Posttranslational processing of a.a.’s to a
mature protein
Regulating Enzymes Present by Gene Expression
Binding of transcription factors to enhancers and promoters controls the ability of RNA polymerase to transcribe the DNA
-Constitutive enzymes: present in a tissue in relatively high and steady amounts-Inducible enzymes: present at low levels or not at all until induced (i.e. cytochrome P450 enzymes in the liver, kidneys and g.i. tract)
1. Types and amounts of enzymes present determine which metabolic pathways are fxn’l in a cell
2. The catalytic activities of the enzymes present can be modulated to affect cellular metabolic pathways
Modulation of Existing Enzyme Molecules Permits Fast Regulation
of Cell Function
Enzymes that catalyze rate-limiting reactions and branch-point reactions are well positioned to exert control over metabolism
An allosteric modulator follows the principles of mass action in binding with the enzyme it modulates – very rapid
Nonsubstrate molecules bind noncovalently with allosteric sites to affect catalytic activity of the enzyme. Upregulated or downregulated.
Can affect the whole pathway if the allosterically regulated enzyme is also rate limiting.
Phosphofructokinase, an allosterically modulated enzyme, is a key regulatory enzyme for glycolysis
Covalent Modulation of Existing Enzymes
• Chemical rxn’s that make or break covalent bonds between modulator and enzymes\
• Requires the action of enzymes to catalyze the making or breaking of covalent bonds– Phosphorylation by protein kinases (specific to the
enzymes they modulate)– Dephosphorylation by protein phosphatases
Protein kinases often function in multi-enzyme sequences that bring about amplifying effects
Evolution of Enzymes
1. Evolutionary relationships of multiple enzyme forms found in sets of related species
2. Evolution of allele frequencies within a single species
Figure 2.21 Enzymes and other proteins can be arranged into family trees based on their amino acid sequences (Part 1)
Figure 2.21 Enzymes and other proteins can be arranged into family trees based on their amino acid sequences (Part 2)
A single LDH gene duplicated (made 2) at the diamonds
Evolution of Enzymes
1. Evolutionary relationships of multiple enzyme forms found in sets of related species
2. Evolution of allele frequencies within a single species – dynamic and on short time scales, reflect present day action of natural selection
Contemporary evolution of lactate dehydrogenase B alleles in the killifish
Death of Enzymes and Proteins
The ubiquitin–proteasome system tags proteins and then inevitably destroys those that are tagged
Ubiquitin tags are added to a protein (ubiquitination) catalyzed by E1 and E2 enzymes
Polyubiquitination leads the proteasome (also an enzyme) to recognize to break up the protein/enzyme to peptides
Peptidases further break down to a.a.’s
Enzymes play a role in light and color
Reception and Use of Signals by Cells
Extracellular signals initiate their effects by binding to receptor proteins
-Ligand gated channels-G protein-coupled receptors-Enzyme linked receptors-Intracellular receptors
Ligand-gated channel
Acts as receptor and channel
Opens to permit inorganic ions to pass through when they bind their ligands. Ions alter the electrical charge across the membrane.
Common in nerve and muscle cell signaling
Fish-hunting cone snail
G protein-coupled receptor and associated G protein system
-Binds ligand then interacts with 2 other cell membrane proteins to activate intracellular enzyme catalytic sites.-The catalytic activity of the enzyme produces cyclic AMP or other 2nd messengers in the cell.-No chemicals pass through the cell membrane.-1st messengers (i.e. hormones & neurotransmitters) bring the message to the outside of the cell. 2nd messengers carry signal to the inside.
Enzyme/enzyme-linked receptor
1. Structurally and functionally diverse
2. Are enzymes themselves or interact directly with enzymes
3. Binds a ligand4. Activates a catalytic
site on the same molecule
5. Cause production of 2nd messengers (i.e. cyclic GMP)
Intracellular receptor
Not localized at cell surface
Ligand (i.e. steroid hormones, thyroid hormones, retinoic acid, vitamin D, nitric oxide gas) diffuses into the cell.
Complexes with a receptor in the cell and often activate transcription.