qnl 19 february 2020 v3 mac.docx...the elixir director niklas blomberg informed on the elixir...

Page1

Issue1/20

www.denbi.de

Thisde.NBIQuarterlyNewsletterinFebruary2020informsaboutrecentdevelopmentsandcurrenteventsintheprojectGermanNetworkforBioinformaticsInfrastructure–de.NBI.

Furtherinformationat:https://www.denbi.de/

SYMPOSIUMCELEBRATINGTHE5THANNIVERSARYOFTHEde.NBI

In March 2015, the GermanMinistryofEducationandResearch(BMBF) launchedthede.NBIprojectwiththeaimof establishingaGermany-widebioinformatics infrastructureofferingbioinformaticsservice, training and international cooperation.Now, five years later, the network isoperatingverysuccessfullyandcelebratedits5thanniversarywithasymposiumon13

February2020attheSeminarsCampusHotelinBerlin.

Morethan150scientiststookpartinthesymposium,mostofthemmembersofthenetwork,butalsotheScientificAdvi-soryBoard,membersofthereviewerteam,membersofthede.NBIIndustrialForum,andrepresentativesoftheMinistryandprojectmanagement.

ThesymposiumwasopenedbytheBMBFrepresentativeMatthiasKölbelwhofocusedonthesuccessfulestablishmentofthebioinformaticsinfrastructurewhichnowneedsasustainablecontinuation.Inthefirstsession,thede.NBIcoordinatorAlfPühlerstartedwithanoverviewonthede.NBIhighlights,followedbythreede.NBIpresentationsfocusingonbioin-formaticsforhumans,plantsandmicrobes.Inthesecondsessionexternalexpertspresentedtheirviewsonspecificas-pectsofthede.NBInetwork.TheELIXIRdirectorNiklasBlomberginformedontheELIXIRorganizationanditscoopera-tionwithde.NBI.RolfApweiler,directorofEMBL-EBI,usedhistalktoreportondigitalmedicineinGermanyandEurope.Finally,DietrichRebholz-Schuhmann,directorofZBMED InformationCenter forLife Sciences,presentedhis instituteengagedinhandlingofresearchdatainthelifescience.

Findmoreinformationat:https://www.denbi.de/events/661-sab-meeting-2020

FurtherreadingonthewebpagesofPtJandBMBF:1) https://www.ptj.de/ueber-uns/aktuelles?backRef=83&news=Fuenf_Jahre_Deutsches_Netzwerk_fuer_Bioinformatik_In-

frastruktur_deNBI2) https://www.bmbf.de/de/bioinformatik-detektivarbeit-im-erbgut-10896.html

THE4THSABMEETINGOFTHEde.NBIIntheframeofthe5thanniversarymeetingofthede.NBInetwork,thede.NBIScientificAdvisoryBoard(SAB)assembledforitsannualmeetingon13-14February2020attheSeminarisCampusHotelinBerlin.

ThecurrentSABconsistsof8internationallyrenownedbioinformaticiansfromAustria,France,Germany,Luxembourg,Spain, Swedenand theNetherlandsandis chairedbyReinhardSchneiderfromLuxembourg.The taskof theSABis tocollect informationon the de.NBI development and to advise the de.NBI networkon its future development. For thismeetingthede.NBIStatusReportwaspresentedwhichcontainsthereportsofthecoordinatorsoftheservicecentersand

CONTENT:1)Symposiumcelebratingthe5thanniversaryofthede.NBI 12)The4thSABmeetingofthede.NBI 23)6thde.NBIplenarymeeting 24)de.NBIhighlightsbrochure 25)ELIXIRGermanyCollaborationAgreementsigned 36)BjörnGrüning(RBC)appointedasleadoftheELIXIRtoolsplatform 37)StephanFuchs(RKI)affiliatedasassociatedde.NBIpartner 38)JohannesWerner(IOW)associatedasde.NBItrainingpartner 49)Thede.NBIinthecontextofartificialintelligence 410)Guidelinesforde.NBIservicesadopted 511)Newrecord:1586trainingcourseparticipantsin2019 512)UseGalaxy.euprovideshumanmulti-omicsdatafromPGP-UK 513)InitialanalysisofWuhanPneumoniaVirus(COVID-2019)usinggalaxy,biocondaandpublicresearchinfrastructure… 614)Newsfromthede.NBIoffice 615)RecentUpdatesofde.NBIServices 616)de.NBI@conferences 717)Upcomingevents 718)Impressum 8

Page2www.denbi.de

Issue1/20

de.NBIQuarterlyNewsletter

de.NBIQuarterlyNewsletter

thechairpersonsoftheSpecial Interestgroups.Thede.NBIcoordinatorandtheHeadoftheadministrationofficecon-tributedachapteronstructure,organizationandtasksofthenetwork.

ThecollaborationwithELIXIRwaselaboratedintheELIXIR-DEre-portasaseparatedocument.Apostersessionwasheldintheeven-ingofthefirstdaytoinformaboutthedevelopmentsandachieve-mentsintheindividualde.NBIprojects.TheseconddayoftheSABmeetingwasthenusedbytheboardtodevelop a recommendation document. In a feedback session themainstatementsofthisdocumentwerepresentedtothede.NBIau-dience.Insummary,theoveralldevelopmentofthede.NBInetworkwashighlyappreciated,butitwasclearlystatedthatthesustainablecontinuationof thenetworkas awhole shouldbe thegoal forthefuture.

FindmoreinformationontheSABat:https://www.denbi.de/organisation/scientific-advisory-board-sab

6THde.NBIPLENARYMEETINGThede.NBIandELIXIR-DEplenarymeetingtookplaceon14February2020.125de.NBImembersparticipatedinthetwosessionsfocusingonthereportofthede.NBIcoordinatorandtheplansoftheServiceCentersandSIGSforthenextprojectphase(bridgephase)thatstartsinMarch2020.InthesecondsessionA.TauchsummarizedthedevelopmentofELIXIRGermanywithfocusonthenowcompletedlegalframeworkconsistingofthecollaborationagreementandtheGermanconsortiumtreaty.B.GrüningandA.GoesmanngaveinsightsintothetasksofthetechnicalcoordinatorandtheELIXIRboard,respectively.Thenewgroupphotoofthede.NBIconsortiumshowsastillgrowingcommunity.

de.NBIHIGHLIGHTSBROCHURETomark the occasionof the 5th anniversary of the de.NBInetwork in 2020, thede.NBI Administration Office presented the brochure entitled “Von der Date-nanalysezumVerstehenkomplexerbiologischerSysteme”whichfeaturescon-tributionsfromde.NBIServiceCentersandprojectspartnersandprovidesinfor-mationon thediverseactivitiesof thede.NBInetwork.Thebrochure showcasesthecontributionofde.NBIasanationalbioinformaticsinfrastructureinthefieldoflife sciences and provides solid information about the advancement of researchconducted in the field of big data on a national level. In order to target a largeamountofreaders,thebrochureispresentedintheGermanlanguage.Thedocu-mentisdividedintofourchapters,namelytheplant,microbialandmedicalbioin-formaticsfollowedbythedescriptionofthede.NBInetworkanditsactivitiesinthefieldsservice,training,cloudcomputing,andindustrialpartnership.Theinterplayofresearchactivitiesbetweenbiotechnology,molecularbiology,genomeresearch,systemsbiology,medicineandbioinformaticsispresentedfromdifferentperspec-tives.Thebrochurealsoincludesaninterviewwiththede.NBIcoordinatorandtheheadoftheadministrationofficeanddiscussesthestructureandorganizationofthenetworkaswellasthemanyactivitiesthathavebeencarriedoutsincede.NBIestablishment.AnEnglishversionisintended.

www.denbi.de

VON DER DATENANALYSE ZUM VERSTEHEN KOMPLEXERBIOLOGISCHER SYSTEME Highlights aus dem Deutschen Netzwerk für Bioinformatik-Infrastruktur

www.denbi.de

Page3www.denbi.de

Issue1/20

de.NBIQuarterlyNewsletter

de.NBIQuarterlyNewsletter

Forfurtherdetails,pleaserefertothefullversionat:https://www.denbi.de/images/Downloads/deNBI_highlight_brochure_Ger-man.pdf

Fortheprintedversionpleasecontactthede.NBIofficeat:contact@denbi.de

ELIXIRGERMANYCOLLABORATIONAGREEMENTSIGNED

On9January2020,theNationalCollaborationAgreementtoestablishtheGermanELIXIRNode(ELIXIR-DE) became effective. This contract was signed by 21 German universities and re-searchinstitutes,includingBielefeldUniversitythatwilltakeoverthelegalroleas‘Represent-ing Entity‘ of ELIXIR Germany. TheNationalCollaboration Agreement is the legal documentthat specifies the organization of ELIXIR-DE and the role of the Central Coordination Unit(CCU).Thiscommitteeisthedecision-makingbodyofELIXIR-DEandresponsiblefortheeffec-

tiveoperationofthenationalELIXIRnode.TheCCUconsistsofninemembers,includingtheHeadofNodeandrepresent-ativesoftheeightserviceunitsofELIXIR-DE.

Inaddition,theELIXIRCollaborationAgreementwassignedbytheRepresentingEntityandtheELIXIRDirector,NiklasBlomberg.Thiscontractbecameeffectiveon10February2020,therebyfullyestablishingtheGermanELIXIRNode.TheELIXIRCollaborationAgreement is the legaldocument that tiestogether theELIXIRHubwith thenationalnodeand itformsthelegalbasisofCommissionedServices.ThesetechnicalprojectsthatguidefutureservicedevelopmentsarefundedthroughthebudgetoftheELIXIRHubandareimplementedbyELIXIRmembersinthenationalnodes.

BJÖRNGRÜNING(RBC)APPOINTEDASLEADOFTHEELIXIRTOOLSPLATFORMInDecember2019ELIXIRannouncednewPlatformLeadsfortheTools,DataandTrainingPlatforms.BjörnGrüning(RBCFreiburg/ELIXIRGermany)wasappointedasPlatformLeadof theELIXIRToolsPlatforms togetherwithSalvadorCapella(ELIXIRSpain)andHervéMenager(ELIXIRFrance).ThePlatformLeadswillserveatwo-yeartermstartingfromthe1January2020.TheyarecollectivelyresponsiblefortheoperationsandactivitiesofthePlatform,andhelptodrivenewdevelopmentsintherespectivetaskareas.ThemainobjectiveoftheELIXIRToolsPlatformistoimprovethediscovery,qualityandsustain-abilityofsoftwareresources.BjörnGrüningisalsoCo-LeaderoftheGalaxyWorkingGroupoftheToolsPlatform,togetherwithFrederikCoppens(ELIXIRBelgium).ThegoalofthisworkinggroupistocontributetothedevelopmentoftheGalaxyplatformandtoprovidespecifictrainingforusers,developersandsystemadministrators.

Moreinformation:https://elixir-europe.org/news/elixir-welcomes-six-new-platform-leads

JOHANNESWERNER(IOW)ASSOCIATEDasde.NBITRAININGPARTNERTheCentralCoordinationUnitofde.NBIapprovedtheapplicationbyJohannesWernertobecomeassociatedtothenetworkas anexternal trainingpartner. Since2018, Jo-hannesWerner is bioinformatics scientist inmarinemicrobialbioinformatics at theDepartmentofBiologicalOceanographyoftheLeibnizInstituteforBalticSeaResearch(IOW)inRostock-Warnemünde.Hisresearchfocusdealsmainlywiththemeta-omicsanalysesofmi-crobialcommunitiesincontactwithanthropogenoussubstances.JohannesWerneralsoconductstrain-ing inbioinformaticsonaregularbasis.Hewillcontributetothede.NBItrainingprogrambyofferingadvancedtraining courseson16SrRNAampliconanalysiswith theRpackagesDADA2 (https://ben-jjneb.github.io/dada2/index.html)andphyloseq(http://joey711.github.io/phyloseq/

STEPHANFUCHS(RKI)AFFILIATEDASASSOCIATEDde.NBIPARTNERIn January 2020, theCentralCoordination Unit (CCU) of de.NBI unanimously approved the applicationof Dr. StephanFuchstobecomeanAssociatedPartnerofthede.NBIconsortium.StephanFuchsisresearcherattheRobertKochInstitute(RKIWernigerode).TheRKI isthegovernment’scentralscientific institutioninthefieldofbiomedicineandoneofthemostimportantbodiesforthesafeguardingofpublichealthinGermany.

Page4www.denbi.de

Issue1/20

de.NBIQuarterlyNewsletter

de.NBIQuarterlyNewsletter

StephanFuchsgainedscientificexperienceinthefieldsofmulti-andmeta-Omicsanalyseswithastrongfocus onnosocomial infections and antibiotic resistances. In the fieldofMetaproteomics, he alreadycollaboratedwith thede.NBIpartnerproject ‚MetaProtServ‘ofDirkBenndorf andGunterSaakefromOttovonGuerickeUniversityMagdeburg.TogetherwiththeMagdeburgteamStephanFuchswillcon-tributetode.NBIservicesandtrainingcourses inmetaproteomeanalysiswiththeMetaProteomeAna-lyzer (MPA) Software (http://www.mpa.ovgu.de) and a de.NBICloud-based versionof theProphaneanalysissoftware(http://www.prophane.de).

THEde.NBIINTHECONTEXTOFARTIFICIALINTELLIGENCEDuring the last session of theCentralCoordination Unit (CCU)on 21 January 2020 in Bielefeld, apaperwith the title„de.NBIimKontextvonMethodenderKünstlichenIntelligenz“,writtenbytheSpecialInterestGrouponde.NBIde-velopment,wasdiscussedandfinallyaccepted.

Thekeyinformationofthisdocumentis:• Deeplearningandartificialintelligencerequirelargeamountsofdata,bioinformaticstoolsandapplicationdomain

expertstoachievebreakthroughsinthelifesciences.• Thede.NBInetwork,asaninfrastructurewheredatafrommanysourcesareprocessedandsubject-specificexpertise

is gathered, canmake decisive contributions to enable artificial intelligence in the life sciences in Germany at aninternationallycompetitivelevel.

Further,itshouldbementionedthatthreePIfromthede.NBInetworkwereselectedbytheFederalMinistryforEducationandResearch(BMBF)tocarryoutresearchprojectsintheframeoftheinitiative„ComputationalLifeSciences(CompLS)-DeepLearninginderBiomedizin“.Thetitlesoftheseresearchprojectsdealwith(a)Deeplearningforthedetectionofproteinvariants, (b) Development of a tool to support the curation of text and bio data and (c) Identificationofnewantimicrobialresistancetargets.

TheGermantextofthiswhitepaperisavailablevia:https://www.denbi.de/images/Downloads/deNBI_KI.pdf.

GUIDELINESFORde.NBISERVICESADOPTEDThede.NBInetworkhassuccessfullyestablishedguidelinesforNodeserviceselectionandqualityassuranceforservicesofferedtothelifescienceresearchcommunitywithinGermanyandEurope.

TheGuidelinesdescribea listofrequiredimplementationsforthe continuationofa certain servicewithin thede.NBIserviceportfolio.Theprocedureissettofacilitatethemonitoringandconstantevaluationoftheexistingservices,aswellashelp intheprocessofendorsingnewonesofferedbyexternalserviceproviders.Withsuchaprocedureinplace, thede.NBInetworkcanguaranteetherelevanceandmaximumperformanceofitsservicesaccordingtothehighestscientificstandards.

Thequalityassurance criteria forde.NBI services are inclusiveandensure thattheoffered services shouldfulfill highscientificandtechnicalstandardsandcomplywithethicalandprivacylegalitiesregardingdataprotectionaswellastheopenscienceandFAIRdataprinciple.Thedocumentwasunanimouslyapprovedbythede.NBICentralCoordinationUnit(CCU)ontheirmeetingonthe22ndofOctober,2019inBielefeld.Thede.NBIadministrationofficestaffwillrunperiodicchecksontheexistingde.NBIservices

Workflow and visualization of results in Prophane

Page5www.denbi.de

Issue1/20

de.NBIQuarterlyNewsletter

de.NBIQuarterlyNewsletter

basedontheapprovedqualityassurancecriteriainordertomaintaintheirperformanceatthehighestcapacity.

Formoredetailspleaserefertothefulltextunderhttps://www.denbi.de/images/Service/deNBI_ELIXIR-DE_Gudielines_Ser-vices.pdf

NEWRECORD:1,586TRAININGCOURSEPARTICIPANTSIN2019Thefifthde.NBIyearwasverysuccessfulinthefield 'training'. In2015,de.NBI startedwith17training coursesand329participants,with in-creasingnumbersin2016(40courseswith882participants),2017(69courseswith1,489par-ticipants)and2018(77courseswith1,520).Inthelastyear,de.NBIfurtherincreasedthenum-ber of courses and participants: 79 trainingcourses with 1,586 participants. The largestcoursewasattendedby72,thesmallestonebyfourscientists.Approx.75%oftheparticipantswerePhDstudentsorPostdocs.Theremaining25%werePIs,undergraduates,andparticipantsfromindustry.Thegenderratioofthestudentswas56%maleand44%female.About30%oftheparticipantscamefromoutsideGermany.Ingeneral,theusersurveyshowssatisfactionvaluesaround90%.Morethan60trainingcourseswithalargevarietyofscientifictopicsarealreadyannouncedfor2020.

UseGalaxy.euPROVIDESHUMANMULTI-OMICSDATAFROMUKPERSONALGENOMEPROJECT

TheFreiburgGalaxyTeamheadedbyBjörnGrüning(RBCFreiburg)announcedthatso-calledmulti-omics reference panel data from the Personal Genome Project UK(PGP-UK) isnowaccessibledirectlyonGalaxyEurope.Thisincludesunprocesseddata,

butalsopregeneratedresults,fromthe10participantswithcompletemulti-omicsdata(whole-genome,methylomeandtranscriptome). InterestedusersofGalaxyEuropeareencouraged touse thedatafor establishingnewworkflows, forowntrainingcoursesandtohonetheirowndataanalysisskills. TheGalaxyTrainingNetworkprovideshands-ontutorialstogetyoustartedwiththeanalysisofthiskindofdata.

MoreInformation:https://galaxyproject.eu/posts/2020/01/16/pgp/

INITIALANALYSISOFCOVID-19DATAUSINGGALAXY,BIO-CONDAANDPUBLICRESEARCHINFRASTRUCTURE(XSEDE,de.NBI-CLOUD,ARDCCLOUD)TheGalaxydevelopmentteamsfromgalaxy.org,galaxy.eu,galaxy.be,andgalaxyorg.auhaveprovidedthepublicreposi-torieswithdescriptionsofallworkflowsandsoftwareversionsusedfortheinitialanalysisofCOVID-19datausingGalaxy,BioCondaandpublicresearchinfrastructure(XSEDE,de.NBI-cloud,ARDCcloud).Thisworkwasaccomplishedwithcon-siderableinvolvementofstafffromRBCFreiburg.

Abstractofthepublication:ThecurrentstateofmuchoftheWuhanpneumoniavirus(COVID-19)researchshowsaregrettablelackofdatasharingandconsiderableanalyticalobfuscation.Thisimpedesglobalresearchcooperation,whichisessentialfortacklingpublichealthemergencies, andrequiresunimpededaccess todata, analysis tools, and computational infrastructure.Hereweshowthatcommunityeffortsindevelopingopenanalyticalsoftwaretoolsoverthepasttenyears,combinedwithnationalinvestmentsintoscientificcomputationalinfrastructure,canovercomethesedeficienciesandprovideanaccessibleplat-formfortacklingglobalhealthemergenciesinanopenandtransparentmanner.Specifically,weuseallCOVID-19genomicdataavailableinthepublicdomainsofarto(1)underscoretheimportanceofaccesstorawdataandto(2)demonstrate

Page6www.denbi.de

Issue1/20

de.NBIQuarterlyNewsletter

de.NBIQuarterlyNewsletter

thatexistingcommunityeffortsincurationanddeploymentofbiomedicalsoftwarecanreliablysupportrapid,reproduc-ibleresearchduringglobalhealthcrises.

Allanalysesarefullydocumentedat:https://github.com/galaxyproject/SARS-CoV-2.

Linktotheoriginalpublication:https://doi.org/10.1101/2020.02.21.959973

NEWSFROMTHEde.NBIOFFICE RabeaaAlkhateebwillleavethede.NBIAdministrationOfficebyendofFebruary2020afteralmosttwoyearsofworkingasthede.NBIServiceCoordinatorandELIXIRGermanyNodeCoordinator.Rab-eaawillmoveonwithhercareerworkingasapostdoctoralresearcherinthefieldofsinglecelltran-scriptomicsandgenomics.WehaveenjoyedhavingRabeaaasamemberofourteamandwouldliketowishherallthebestforthenextsteps!

RECENTUPDATESOFde.NBISERVICESNewversionsofvariousde.NBIservicesandtoolshavebeenreleasedinthelastmonthsaccompaniedbyrespectivepublications:

SILVAngsFrontendupdatedtoversion1.9.5.Newfeaturesinclude:updatedFingerprintTool,updatedinformationand the de.NBI cloud and improved stability and performance. https://www.denbi.de/services/344-silvangs-a-data-analysis-service-for-ribosomal-rna-gene-rdna-amplicon-reads-from-high-throughput-sequencing-next-gene-ration-sequencing-ngs-approaches

OpenMS:ThenewalgorithmsFLASHDecon,availablethroughOpenMSprovides2-3ordersofmagnitudefasterdeconvolutionoftop-downproteinspectraPublication:FLASHDeconv:Ultrafast,High-QualityFeatureDeconvolutionfor Top-Down Proteomics. https://doi.org/10.1016/j.cels.2020.01.003 Find OpenMS at:https://www.denbi.de/services/369-openms-a-c-library-for-lc-ms-data-management-and-analyses

Mercator:Theannotationtool forplatproteinsoffersnow integratedFASTA functional annotationforplantproteins.https://www.denbi.de/services/507-mercator-annotate-and-classify-plant-protein-and-dna-sequences

SeqAN3.0.1:Anewreleasehasbeenpublished. Seethenewfeaturesat: http://www.seqan.de/seqan-3-0-1-released/

Siamcat:Newpublicationisout:SIAMCAT:user-friendlyandversatilemachine learningworkflowsforstatisti-cally rigorousmicrobiomeanalyses, J.Wirbel,K. Zych,M.Essex,N.Karcher, E.Kartal,G. Salazar,P. Bork,S.Suna-gawa,G. Zeller; doi:https://doi.org/10.1101/2020.02.06.931808 . Find the service at:https://www.denbi.de/services/272-siamcat-modular-framework-for-the-statistical-inference-of-associa-tions-between-microbial-communities-and-host-phenotypes

FreiburgRNAToolsWebserver:NewintegrationofMutaRNAtooltoevaluatemutationeffectsonRNAstruc-tureandanupdatedIntaRNA3.1.3forRNA-RNAinteractionprediction.https://www.denbi.de/services/356-freiburg-rna-tools-webserver

UseGalaxy.eu published a factsheet available at: https://github.com/usegalaxy-eu/branding/tree/mas-ter/factsheet.Exciting progress in the ELIXIRGalaxy community is described in the newspost https://elixir-europe.org/news/galaxy-europe-2020

CropAnalysisToolsSuite(CATS):ThetoolKmaskerplantsbit.ly/2G738pdhasbeenupdated.Itallowstheiden-tification of repetitive sequences and thus facilitates the analysis of plant genomes. Find CATS athttps://www.denbi.de/services/503-crop-analyis-tools-suite

de.NBI@CONFERENCES

de.NBIsupportedconferencesinthenearfuture 6thjointconferenceofDGHMandVAAM,8-11Mar2020,Leipzig

de.NBIwillexhibitaboothatthelargestGermanconferenceinthesectormicrobiol-ogyandhygiene.Anexpectedaudienceof>1000scientistswillprovidetheoppor-tunitytointroducede.NBIservices,trainingportfolio,andcloudtoalargecommunity.

Generalinformationandregistrationat:https://vaam.de/aktivi-taeten/jahrestagung/

Page7www.denbi.de

Issue1/20

de.NBIQuarterlyNewsletter

de.NBIQuarterlyNewsletter

UPCOMINGEVENTSThecalendarliststhede.NBItrainingcoursesandeventsscheduledinthenextmonths.Allcoursesareaccessibleviathede.NBIwebpage.Anumberoftrainingeventsareinthepipelinebutnotyetscheduled.Pleaseconsultthede.NBItrainingprogramforupdates.

Overviewofupcomingde.NBIevents

Date Event City Organizer

26Feb2020 BioC++-solvingdailybioinformatictaskswithC++efficiently-BIOSTEC2020 Valletta CIBI

02-06Mar2020 GalaxyAdminworkshop2020 Barcelona RBC

05Mar2020 IntroductiontoDataManagement Plön de.NBI-SysBio

15-21Mar2020 OpenMSDeveloperMeeting Corinth CIBI

18Mar2020 IntroductiontoRegularExpressions Heidelberg HD-HuB

23-27Mar2020 GalaxysinglecellRNA-seqdataanalysisworkshop Freiburg RBC

30-31Mar2020 SoftwareCarpentry1.2020 Köln Ass. Partner ZB MED

30Mar–01Apr

2020 IntroductiontoMachineLearningusingGalaxy Freiburg RBC

03Apr2020 KNIMEWorkshopatSpringSummit Berlin CIBI

21April2020 22.CCUMeeting Berlin CAU/HD-HuB

27-29Apr2020ToolsforSystemsbiologymodelinganddataexchange:CO-PASI,CellNetAnalyzer,SABIO-RK,FAIRDOMHub/SEEK2020 Magdeburg de.NBI-SysBio

04-06May2020 6thde.NBIGenomicstrainingcourse Gießen BiGi et al.

18-19May2020 DNAMethylation:DesigntoDiscovery2020 Saarbrücken HD-HuB/ de.NBI-epi

20May2020 Phylogeneticreconstructioncourse2020 Kiel Ass. Partner Kiel

15-17Jun2020Computationalgenomicscourseforhands-ondataanalysis2020-Modules:Datavisualization&machinelearning,RNASeq,SingleCellSeq

Berlin RBC/de.NBI-epi

21-26Jun2020 CSAMA2020:StatisticalDataAnalysisforGenome-ScaleBiol-ogy

Bressanone-Brixen HD-HuB

30Jun2020 23.CCUMeeting Bochum CAU/BioIn-fra.Prot

24-28Aug2020 CICSummerSchoolonCheminformatics Halle(Saale) BioData

14Sep2020 OpenMSattheGermanConferenceforBioinformatics(GCB) Frankfurt CIBI

14Sep2020 SeqAnattheGermanConferenceforBioinformatics(GCB) Frankfurt CIBI

14Sep2020 ProteinsPlusattheGermanConferenceforBioinformatics(GCB) Frankfurt BioData

21-25Sep2020 de.NBISummerSchool2020-Metagenomics Gießen BiGi,

11Oct2020 COMBINE&de.NBITutorial:ModellingandSimulationToolsinSystemsBiology–ICSB2020 Farmington de.NBI-SysBio

Furtherinformationat:http://www.denbi.de/training

Page8www.denbi.de

Issue1/20

de.NBIQuarterlyNewsletter

de.NBIQuarterlyNewsletter

IMPRESSUM RESPONSIBLEFORCONTENTSA.Pühler,A.Tauch,T.Dammann-Kalinowskide.NBI-GermanNetworkforBioinformaticsInfrastructurec/oCenterforBiotechnology(CeBiTec)BielefeldUniversity33594BielefeldGermanyPhone:+49-(0)521-106-8750Fax:+49-(0)521-106-89046email:puehler@cebitec.uni-bielefeld.deweb:https://www.denbi.deemail:contact@denbi.detwitter:#denbi,@denbiOfficelinkedIn:https://www.linkedin.com/company/de-nbiForquestionsandremarkspleasecontactcontact@denbi.deThede.NBIissupportedbyBMBFgrantsFKZ031A532-031A540and031L0101-031L0108.

SUBSCRIPTIONIfyouareinterestedinreceivingregularupdatesonde.NBI–GermanNetworkofBioinformaticsInfrastructure,pleasesubscribetothede.NBIQuarterlyNewsletterat:https://www.denbi.de/downloads/de-nbi-newsletter-subscriptionThemailinglistwillexclusivelybeusedtodistributethede.NBIQuar-terlyNewsletter.Tounsubscribefromthede.NBIQuarterlyNewsletter,pleaseusehttps://www.denbi.de/downloads/de-nbi-newsletter-subscriptionThede.NBIQuarterlyNewsletterisaserviceofde.NBI–GermanNet-workforBioinformaticsInfrastructureformembers,partnersandinter-estedpublic.Allphotosarecopyrightofthede.NBIadministrationofficeifnotmarkedotherwise.