influenza virus resources
Post on 05-Apr-2018
217 Views
Preview:
TRANSCRIPT
-
7/31/2019 Influenza Virus Resources
1/8
Influenza virus resources
NCBI
Home
Search
Site Map
Influenza Virus Resource: information, search and analysis
Flu home
Database
Genome Set
Alignment
Tree
BLAST
Annotation
FTP
Help
Contact us
I nf luenza Virus Sequence DatabaseProtein or nucleotide sequences can be retr ieved from the database using GenBank accession numbers or search terms.Mult iple queries can be built by clicking the "Add Query" button every time a new query is made, and queries in any combination f rom theQuery Builder can be selected to get sequences in t he database. Sequences can be downloaded, and i t is possible to analyze them usingthe mult iple sequence alignment or tree building tool integrated to the database.
Get sequences by accessionUpload
##Enter a comma or space separatedlist of sequence accessions orupload text file with this list.
Select sequence type:
Protein
Protein coding region Nucleotide
Search for keyword:Keyword Search in
Define search set:
http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/nph-select.cgi (1 of 8) [12/24/2011 7:54:40 PM]
Browse...
Add query
Perth strain name
http://www.ncbi.nlm.nih.gov/http://www.ncbi.nlm.nih.gov/http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=ncbisearchhttp://www.ncbi.nlm.nih.gov/Sitemap/http://www.ncbi.nlm.nih.gov/genomes/FLU/FLU.htmlhttp://www.ncbi.nlm.nih.gov/genomes/FLU/FLU.htmlhttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=databasehttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=genomesethttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=alignmenthttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=treehttp://www.ncbi.nlm.nih.gov/sutils/blast_table.cgi?taxid=11308&selectallhttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/annotation.cgiftp://ftp.ncbi.nih.gov/genomes/INFLUENZA/http://www.ncbi.nlm.nih.gov/genomes/FLU/help.htmlmailto:genomes@ncbi.nlm.nih.gov?subject=Influenza%20Virus%20Resourcemailto:genomes@ncbi.nlm.nih.gov?subject=Influenza%20Virus%20Resourcehttp://www.ncbi.nlm.nih.gov/genomes/FLU/help.htmlftp://ftp.ncbi.nih.gov/genomes/INFLUENZA/http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/annotation.cgihttp://www.ncbi.nlm.nih.gov/sutils/blast_table.cgi?taxid=11308&selectallhttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=treehttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=alignmenthttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=genomesethttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=databasehttp://www.ncbi.nlm.nih.gov/genomes/FLU/FLU.htmlhttp://www.ncbi.nlm.nih.gov/genomes/FLU/FLU.htmlhttp://www.ncbi.nlm.nih.gov/Sitemap/http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=ncbisearchhttp://www.ncbi.nlm.nih.gov/http://www.ncbi.nlm.nih.gov/ -
7/31/2019 Influenza Virus Resources
2/8
Influenza virus resources
Type
Host
Country/Region
Protein
Subtype mixed
Sequences length
Min.:
Max.:
Full-lengthonly
Collection date
From:
To:
Year Mont h Day
Release dat
Year Mon
Additional
fi lters:
/
show
Required segments: Select all Full-length only
PB2 PB1 PB1-F2 PA HA NP NA M1 M2 NS1 NS2
Collection date must contain:
Month Day
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/nph-select.cgi (2 of 8) [12/24/2011 7:54:40 PM]
any
A
B
C
Human
Leopard
Mink
Muskrat
any
Northern temperate
Southern temperate
Tropical
HA
NP
NA
M1
3
4
5
6
any
1
2
3
2009
2009
Include
Include
-
7/31/2019 Influenza Virus Resources
3/8
Influenza virus resources
Lab strains
Vaccine strains
Lineage defining strains
Query builderType Host Country
or region
Protein Subtype Length Ful l-length
only
Collection
date
Release
date
Additional
filters
Sel
A Human any HA H3N2 any any any
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 19601970 any
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 19711980 any
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 19811990 any
http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/nph-select.cgi (3 of 8) [12/24/2011 7:54:40 PM]
Exclude
Include
Include
Add query
X
Include
Include
Exclude
Include
Include
Include
Include
Exclude
Include
Include
Include
Include
Exclude
Include
Include
-
7/31/2019 Influenza Virus Resources
4/8
Influenza virus resources
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 19912000 any
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 20012011 any
Get sequences from: Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 19951995 any
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 19911995 any
http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/nph-select.cgi (4 of 8) [12/24/2011 7:54:40 PM]
Include
Include
Exclude
Include
Include
Include
Include
Exclude
Include
Include
Include
Include
Exclude
Include
Include
IncludeInclude
Exclude
Include
Include
-
7/31/2019 Influenza Virus Resources
5/8
Influenza virus resources
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 19962000 any
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 20012005 any
Get sequences from: Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 20012003 any
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 20042007 any
http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/nph-select.cgi (5 of 8) [12/24/2011 7:54:40 PM]
Include
Include
Exclude
Include
Include
Include
Include
Exclude
Include
Include
Include
Include
Exclude
Include
Include
IncludeInclude
Exclude
Include
Include
-
7/31/2019 Influenza Virus Resources
6/8
Influenza virus resources
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 20042006 any
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 20042005 any
Get sequences from: Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any any any
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 20102010 any
http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/nph-select.cgi (6 of 8) [12/24/2011 7:54:40 PM]
Include
Include
Exclude
Include
Include
Include
Include
Exclude
Include
Include
Include
Include
Exclude
Include
Include
IncludeInclude
Exclude
Include
Include
-
7/31/2019 Influenza Virus Resources
7/8
Influenza virus resources
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 20092009 any
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 20092009 any
Get sequences from: Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
A Human any HA H3N2 any 20092009 any
Get sequences from:
Pandemic (H1N1) viruses
The FLU project
Lab strains
Vaccine strains
Lineage defining strains
Collapse ident ical sequences
Customize FASTA defline
http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/nph-select.cgi (7 of 8) [12/24/2011 7:54:40 PM]
Include
Include
Exclude
Include
Include
Include
Include
Exclude
Include
Include
Include
Include
Exclude
Include
Include
IncludeInclude
Exclude
Include
Include
Show results
Download results Protein (FASTA)
-
7/31/2019 Influenza Virus Resources
8/8
Influenza virus resources
Defline ClearReset
Click to insert: GiAccessionHostSegment nameSerotypeSegment numberCountryYearMonthDayStrainVirus nameDefinitionAge
Disclaimer Privacy statement Accessibility
http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/nph-select.cgi (8 of 8) [12/24/2011 7:54:40 PM]
>{accession} {strain} {ye
http://www.ncbi.nlm.nih.gov/About/disclaimer.htmlhttp://www.nlm.nih.gov/privacy.htmlhttp://www.ncbi.nlm.nih.gov/About/accessibility.htmlhttp://www.ncbi.nlm.nih.gov/About/accessibility.htmlhttp://www.nlm.nih.gov/privacy.htmlhttp://www.ncbi.nlm.nih.gov/About/disclaimer.html
top related