influenza virus resources

7/31/2019 Influenza Virus Resources

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Influenza virus resources

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I nf luenza Virus Sequence DatabaseProtein or nucleotide sequences can be retr ieved from the database using GenBank accession numbers or search terms.Mult iple queries can be built by clicking the "Add Query" button every time a new query is made, and queries in any combination f rom theQuery Builder can be selected to get sequences in t he database. Sequences can be downloaded, and i t is possible to analyze them usingthe mult iple sequence alignment or tree building tool integrated to the database.

Get sequences by accessionUpload

##Enter a comma or space separatedlist of sequence accessions orupload text file with this list.

Select sequence type:

Protein

Protein coding region Nucleotide

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http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/nph-select.cgi (1 of 8) [12/24/2011 7:54:40 PM]

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Perth strain name
http://www.ncbi.nlm.nih.gov/http://www.ncbi.nlm.nih.gov/http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=ncbisearchhttp://www.ncbi.nlm.nih.gov/Sitemap/http://www.ncbi.nlm.nih.gov/genomes/FLU/FLU.htmlhttp://www.ncbi.nlm.nih.gov/genomes/FLU/FLU.htmlhttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=databasehttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=genomesethttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=alignmenthttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=treehttp://www.ncbi.nlm.nih.gov/sutils/blast_table.cgi?taxid=11308&selectallhttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/annotation.cgiftp://ftp.ncbi.nih.gov/genomes/INFLUENZA/http://www.ncbi.nlm.nih.gov/genomes/FLU/help.htmlmailto:[email protected]?subject=Influenza%20Virus%20Resourcemailto:[email protected]?subject=Influenza%20Virus%20Resourcehttp://www.ncbi.nlm.nih.gov/genomes/FLU/help.htmlftp://ftp.ncbi.nih.gov/genomes/INFLUENZA/http://www.ncbi.nlm.nih.gov/genomes/FLU/Database/annotation.cgihttp://www.ncbi.nlm.nih.gov/sutils/blast_table.cgi?taxid=11308&selectallhttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=treehttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=alignmenthttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=genomesethttp://www.ncbi.nlm.nih.gov/genomes/FLU/Database/select.cgi?go=databasehttp://www.ncbi.nlm.nih.gov/genomes/FLU/FLU.htmlhttp://www.ncbi.nlm.nih.gov/genomes/FLU/FLU.htmlhttp://www.ncbi.nlm.nih.gov/Sitemap/http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=ncbisearchhttp://www.ncbi.nlm.nih.gov/http://www.ncbi.nlm.nih.gov/


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Type

Host

Country/Region

Protein

Subtype mixed

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Full-lengthonly

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Year Mont h Day

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Year Mon

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fi lters:

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Required segments: Select all Full-length only

PB2 PB1 PB1-F2 PA HA NP NA M1 M2 NS1 NS2

Collection date must contain:

Month Day

Get sequences from:

Pandemic (H1N1) viruses

The FLU project


any

A

B

C

Human

Leopard

Mink

Muskrat

any

Northern temperate

Southern temperate

Tropical

HA

NP

NA

M1

3

4

5

6

any

1

2

3

2009

2009

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Lab strains

Vaccine strains

Lineage defining strains

Query builderType Host Country

or region

Protein Subtype Length Ful l-length

only

Collection

date

Release

date

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filters

Sel

A Human any HA H3N2 any any any

Get sequences from:


The FLU project

Lab strains

Vaccine strains


A Human any HA H3N2 any 19601970 any

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The FLU project

Lab strains

Vaccine strains



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The FLU project

Lab strains

Vaccine strains




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Get sequences from:


The FLU project

Lab strains

Vaccine strains



Get sequences from:


The FLU project

Lab strains

Vaccine strains



Get sequences from: Pandemic (H1N1) viruses

The FLU project

Lab strains

Vaccine strains



Get sequences from:


The FLU project

Lab strains

Vaccine strains




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Include

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IncludeInclude

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Get sequences from:


The FLU project

Lab strains

Vaccine strains



Get sequences from:


The FLU project

Lab strains

Vaccine strains




The FLU project

Lab strains

Vaccine strains



Get sequences from:


The FLU project

Lab strains

Vaccine strains




Include

Include

Exclude

Include

Include

Include

Include

Exclude

Include

Include

Include

Include

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Include

IncludeInclude

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Include


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Get sequences from:


The FLU project

Lab strains

Vaccine strains



Get sequences from:


The FLU project

Lab strains

Vaccine strains




The FLU project

Lab strains

Vaccine strains


A Human any HA H3N2 any any any

Get sequences from:


The FLU project

Lab strains

Vaccine strains




Include

Include

Exclude

Include

Include

Include

Include

Exclude

Include

Include

Include

Include

Exclude

Include

Include

IncludeInclude

Exclude

Include

Include


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Get sequences from:


The FLU project

Lab strains

Vaccine strains



Get sequences from:


The FLU project

Lab strains

Vaccine strains




The FLU project

Lab strains

Vaccine strains



Get sequences from:


The FLU project

Lab strains

Vaccine strains


Collapse ident ical sequences

Customize FASTA defline


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Download results Protein (FASTA)


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Click to insert: GiAccessionHostSegment nameSerotypeSegment numberCountryYearMonthDayStrainVirus nameDefinitionAge

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>{accession} {strain} {ye
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