albumin binding as a general strategy for improving the ... · albumin binding as a general...
TRANSCRIPT
JBC 1 7/9/02
Albumin Binding as a General Strategy for Improving
the Pharmacokinetics of Proteins
Mark S. Dennis*§, Min Zhang§, Y. Gloria Meng‡, Miryam Kadkhodayan¶
Daniel Kirchhofer∏, Dan Combs†, Lisa A. Damico†
Department of Protein Engineering§,
Department of Assay and Automation Technology‡,
Department of Analytical Chemistry¶
Department of Physiology∏, and
Department of Clinical and Experimental Pharmacology†
Genentech, Inc.
1 DNA Way, South San Francisco, California 94080
Running title: Improved t1/2 through albumin binding
* To whom all correspondence should be sent
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1The abbreviations used are: Fv, the variable light and variable heavy domains of an
IgG; scFv, a single-chain Fv; Fab, the antigen binding fragment consisting of the light
chain and the variable and first constant domains of the heavy chain; Fab’2, two Fab
fragments joined by disulfides at the hinge region; SA06, an albumin binding peptide
with the sequence: QRLMEDICLPRWGCLWEDDF; SA08b, an albumin binding peptide
with the sequence: Ac-QGLIGDICLPRWGCLWGDSVKb-NH2 where Kb refers to lysine-
biotin; GFR, glomerular filtration rate; TF, the extracelluar domain of human tissue factor
(residues 1-219); D3H44, a humanized IgG directed against human TF; D3H44 Fab, the
Fab portion of D3H44; D3H44-L, D3H44 Fab with SA06 fused to the carboxyl terminal
of the light chain; D3H44-Ls, D3H44 Fab lacking the light-heavy chain disulfide with
SA06 fused to the carboxyl terminal of the light chain; FX, coagulation Factor X; t1/2,
half-life; PEG, polyethylene glycol; HRP, horse radish peroxidase; TCEP, Tri(2-
carboxyethyl)phosphine hydrochloride. Both the standard three letter and single letter
codes for amino acids are used.
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ABSTRACT
Plasma protein binding can be an effective means of improving the pharmacokinetic
properties of otherwise short-lived molecules. Using peptide phage display we identified
a series of peptides having the core sequence: DICLPRWGCLW that specifically bind
serum albumin from multiple species with high affinity. These peptides bind to albumin
with 1 to 1 stoichiometry at a site distinct from known small molecule binding sites.
Using surface plasmon resonance, the dissociation equilibrium constant of peptide
SA21 (Ac -RLIEDICLPRWGCLWEDD-NH2) was determined to be 266 ± 8, 320 ± 22
and 467 ± 47 nM for rat, rabbit and human albumin, respectively. SA21 has an
unusually long half-life of 2.3 h when injected by I.V. bolus into rabbits. A related
sequence, fused to the anti-tissue factor Fab of D3H44 (Presta et. al. (2001) Thromb.
Haemost. 85, 379), enabled the Fab to bind albumin with similar affinity to that of SA21
while retaining the ability of the Fab to bind tissue factor. This interaction with albumin
resulted in reduced in vivo clearance of 25- and 58-fold in mouse and rabbit,
respectively, when compared to the wild-type D3H44 Fab. The half-life was extended
37-fold to 32.4 h in rabbit and 26-fold to 10.4 h in mouse achieving 25 to 43 percent of
the albumin half-life in these animals. These half-lives exceed those of a Fab’2 and are
comparable to those seen for PEG conjugated Fab molecules, immunoadhesins, and
albumin fusions suggesting a novel and generic method for improving the
pharmacokinetic properties of rapidly cleared proteins.
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INTRODUCTION
The effectiveness of recombinant protein pharmaceuticals depends heavily on the
intrinsic pharmacokinetics of the natural protein. Because the kidney generally filters out
molecules below 60 kDa, efforts to reduce clearance have focused on increasing
molecular size through protein fusions, glycosylation or the addition of polyethylene
glycol polymers (i.e. PEG)1. For example, fusions to large long-lived proteins such as
albumin (1,2) or the Fc portion of an IgG (3), the introduction of glycosylation sites (4) or
conjugation with PEG (5-7) have been used. Through these methods, the in vivo
exposure of protein therapeutics has been extended.
Small molecule drugs have long relied on their association with various plasma
components to improve their pharmacokinetic properties in vivo; however, a drug
associated with plasma protein is usually unavailable for binding to the target even
though its half-life is extended. Since only the unbound fraction of the small molecule is
generally functionally active, a fine balance must be maintained between the
concentration of free drug required for efficacy and the frequency at which it must be
administered (8).
Albumin (molecular weight ~ 67 kDa) is the most abundant protein in plasma, present
at 50 mg/ml (600 µM), and has a half-life of 19 days in humans (9,10). Albumin serves
to maintain plasma pH, contributes to colloidal blood pressure, functions as carrier of
many metabolites and fatty acids, and serves as a major drug transport protein in
plasma. There are several major small molecule binding sites in albumin that have been
described. Warfarin is known to bind at site I, benzodiazepines and indoles at site II and
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cardenolides and biliary acids at site III. In addition, there is an important metal ion
binding site.
Non-covalent association with albumin has been shown to extend the half-life of
short-lived proteins. A recombinant fusion of the albumin binding domain from
Streptococcal protein G to human complement receptor type 1 increased its half-life 3-
fold to 5 h in rats (11). In addition, fusion to this domain has served to enhance the
immunological response directed to peptide antigens (12). In another example, when
insulin was acylated with fatty acids to promote association with albumin (13,14), a
protracted effect was observed when injected subcutaneously in rabbits or pigs.
Together, these studies demonstrate a linkage between albumin binding and prolonged
action.
In this report, peptide phage display was used to develop peptides that selectively
bind albumin with high affinity. These peptides bind to albumin from multiple species at
a novel site distinct from the known classical binding sites. To test whether association
of a short-lived protein with albumin could improve its pharmacokinetic properties, one
albumin binding peptide was added to a Fab through the use of a simple recombinant
fusion that rendered it capable of binding albumin without affecting antigen binding. We
demonstrate this approach as a viable route to increasing the half-life of potentially
important protein pharmaceuticals.
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METHODS
Phage Libraries and Selection Conditions – Eighteen phage libraries expressing
random peptide sequences fused to the major coat protein, P8 (15) were pooled into 4
groups: Pool A contained CX2GPX4C, X4CX2GPX4CX4, and XiCXjCXk where j = 8-10;
Pool B contained X20 and XiCXjCXk where j = 4-7; Pool C contained X8 and X2CXjCX2
where j =4-6; Pool D contained X2CXjCX2 where j =7-10. X represents any of the 20
naturally occurring L-amino acids and in Pools A and B, i + j + k = 18 and | i - k | < 2.
Each library has in excess of 1010
clones.
The phage library pools were suspended in Binding Buffer (PBS, 1% ovalbumin,
0.05% Tween 20) and sorted against rabbit, rat or human albumin (Sigma, St. Louis,
MO) immobilized directly on Maxisorp plates (Nunc, Roskilde, Denmark) at 10 µg/ml in
PBS, overnight at 4oC. Plates were blocked for 1 h at 25oC using PBS, containing 1%
ovalbumin except for round 4 where TBS-Casein Blocker (Pierce) was used. Phage
were allowed to bind for 2 h. Unbound phage were removed by repetitive washing with
PBS, 0.05% Tween 20 and bound phage were eluted with 500 mM KCl, 10 mM HCl, pH
2. Eluted phage were propagated in XL1-Blue cells with VCSM13 helper phage
(Stratagene, La Jolla, CA). Enrichment was monitored by titering the number of phage
that bound to an albumin coated well compared to a well coated with ovalbumin or
casein.
Phage Binding Assay—Phage clones (~1011 phage) were added to Maxisorp plates
coated with mouse, rat, rabbit, bovine, rhesus or human albumin (Sigma, St. Louis, MO)
as described above. The microtiter plate was washed with PBS, 0.05% Tween 20 and
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bound phage were detected following incubation with HRP/Anti-M13 Conjugate
(Amersham Pharmacia Biotech, Piscataway, NJ) in PBS, 0.05% Tween 20. The
amount of HRP bound was measured using ABTS/H2O2 substrate (Kirkegaard & Perry
Laboratories, Gaithersburg, MD) and monitoring the absorbance at 405 nm.
Partial and Complete Randomization on Monovalent Phage- A soft randomized
library was designed using an oligonucleotide coding for clone RB, but synthesized with
a 70-10-10-10 mixture of bases as described (16). A fully randomized library was
designed holding highly selected residues (underlined) constant: X5DXCLPXWGCLWX4;
randomized positions (X) were coded by NNS. Both the soft randomized and fully
randomized libraries were sorted against rat, rabbit and human serum albumin as
above.
Peptide Synthesis—Peptides were synthesized by either manual or automated
(Milligen 9050) Fmoc-based solid phase synthesis on a 0.25 mmol scale using a PEG-
polystyrene resin as described (17). The carboxy terminal lysine of peptide SA08 was
derivatized with NHS-LC-biotin as recommended by the manufacturer (Pierce Chemical,
Rockford, IL) and purified by reversed phase HPLC yielding SA08b (Ac-
QGLIGDICLPRWGCLWGDSVKb–NH2 where Kb refers to lysine-biotin).
Peptide Competition Assay—Rat, rabbit or mouse albumin was immobilized directly
on Maxisorp plates and blocked as above. Samples, serially diluted in Binding Buffer
were added to the plate followed immediately by the addition of 10 nM SA08b for 1 h, at
25oC. SA08b has an EC50 of 2 and 4 nM for rat and rabbit albumin, respectively. The
microtiter plate was washed with PBS, 0.05% Tween 20 and bound SA08b was
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detected with Streptavidin/HRP (Roche Molecular Biochemicals, Indianapolis, IN). The
amount of HRP bound was measured using ABTS/H2O2 substrate as above.
Affinity Measurements by Surface Plasmon Resonance—The binding affinities
between SA peptides and albumin were obtained using a BIAcore 3000 (BIAcore Inc.,
Piscataway, NJ). Human, rabbit and rat albumin were captured on a CM5 chip using
amine coupling at approximately 5000 resonance units (RU). SA peptides at 0, 0.625,
1.25, 2.5, 5, and 10 µM were injected at a flow rate of 20 µl/min for 30 seconds. The
bound peptides were allowed to dissociate for 5 min before matrix regeneration using
10 mM glycine, pH 3. The signal from an injection passing over an uncoupled cell was
subtracted from that of an immobilized cell to generate sensorgrams of the amount of
peptide bound as a function of time. The running buffer, PBS containing 0.05% Tween-
20, was used for all sample dilutions. BIAcore kinetic evaluation software (version 3.1)
was used to determine KD from the association and dissociation rates using a one-to-
one binding model.
Pharmacokinetic Study of SA21 in Rabbits – Three male New Zealand White (NZW)
rabbits were administered an intravenous (IV) bolus dose of 2 mg/kg of SA21 in PBS.
Eighteen blood samples were collected at serial time-points just prior to dosing and from
1 min to 21 days post-dosing. Samples were collected in tubes containing sodium
citrate as an anticoagulant, then centrifuged and the plasma portion frozen at -70oC
until analysis using an ESI (electrospray), LC/MS/MS method.
The mass spectrometer used was an API 4000 (Applied Biosystems / MDS Sciex,
Foster City, CA). The autosampler was a CTCPAL System (Leap Technologies, Chapel
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Hill, NC) equipped with a cooling stack. The HPLC system consisted of the Shimadzu
SCI-10A System Controller with two Shimadzu LC-10A pumps. A pre-filter was placed
in front of the analytical column (C18, 2.1 X 50 mm, Phenomenex Synergi 4µ MAX-RP
80A). The column flow was set at 500 µL per minute. Solvent systems A (100% H2O)
and B (100% acetonitrile) both contained 1% formic acid. A fast gradient (0.0-0.4 min,
90% A; 0.4-0.8 min, from 90% A to 10% A; 0.8-1.8 min, 10% A; 1.8-2.0 min, from 10%
A to 90% A; 2.0-3.0 min, 90% A) was used for all analysis. The injection volume was 10
µL.
SA 21 was initially characterized via direct infusion (1 µM in 20% acetonitrile) into the
API 4000. The transition of triply charged ion 758 to fragment 948 was optimized for
analysis in plasma matrix. Standard curves were prepared in citrated rabbit plasma in
96 well plates by adding 10 µL of diluted SA21 into 190 µL of plasma over a range of
2500 nM to 4.9 nM. TCEP (Tri(2-carboxyethyl)phosphine hydrochloride, Sigma-Aldrich,
St. Louis, MO) was used as a reducing agent to enhance peptide recovery and was
added to all samples at a final concentration of 2 mM for 20 min at 37oC. Plasma
proteins were then precipitated by addition of 160 µL of 80% acetonitrile to 40 µL of
plasma for 10 min and removed by centrifugation for 10 min at 10oC. The supernatant
was transferred to another 96 well plate and the plate was sealed with silicone sealing
mat (AxyGen, Inc., Union City, CA). Samples were placed in the autosampler at 5oC to
be analyzed by LC/MS/MS. Samples with a high concentration of SA21 (PK samples
from 1 min to 7 h) were diluted 10-fold with blank rabbit plasma prior to TCEP addition.
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Pharmacokinetic parameters were fitted to a 1-compartment elimination model using
WinNonlin software version 3.1 (Pharsight Corp, Mountain View, CA) to obtain the
clearance (CL), volume of distribution (V1), elimination half-life (t1/2), and drug exposure
(AUC).
Construction, Expression and Purification of D3H44-L and D3H44-Ls – D3H44 Fab
was produced as described (18). D3H44-L was constructed by inserting DNA encoding
a linker sequence (GGGS) followed by SA06 (QRLMEDICLPRWGCLWEDDF) onto the
carboxyl terminal end of the light chain of D3H44 using Kunkel mutagenesis (19).
D3H44-Ls was constructed in the same manner, however, additional mutations were
added to remove the disulfide between the light and heavy chains of the Fab. Each
chain was terminated one residue prior to the heavy-light inter-chain disulfide followed
by the addition of the linker sequence and peptide SA06 to the light chain. The resulting
plasmids, pD3H44-L and pD3H44-Ls, were confirmed by DNA sequencing. Expression
of D3H44-L and D3H44-Ls was carried out as described (18). Cells were harvested,
frozen, suspended in 1 mM EDTA, 10 mM Tris pH 8, 0.5 mM PMSF and disrupted using
a tissue homogenizer. D3H44-L and D3H44-Ls were rapidly purified using a Hi-Trap TF
affinity column followed by a Hi-Trap rabbit albumin affinity column (Amersham
Pharmacia Biotech, Piscataway, NJ), each generated as recommended by the
manufacturer. Both columns were washed with PBS and eluted with 50 mM HCl. Eluted
fractions were immediately neutralized using 1 M Tris pH 8. D3H44-L and D3H44-Ls
were further purified using Sephacryl S-200 gel filtration (Amersham Pharmacia
Biotech, Piscataway, NJ) in PBS followed by an extraction with Triton X-114 to remove
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traces of endotoxin (20). D3H44-L and D3H44-Ls were judged greater than 99% pure
by SDS-PAGE.
FX Activation and Prothrombin Time Assays - The FX activation assay and the
Prothrombin Time (PT) assay were performed as described previously (18).
Albumin/TF Sandwich Assay – A soluble mutant of TF (E219C) (21) was specifically
biotinylated using a 4-fold molar excess of biotin BMCC (Pierce, Rockford, IL) in 200
mM Tris pH 7.5, 20% DMSO. The reaction was desalted using a NAP5 (Amersham
Pharmacia Biotech, Piscataway, NJ) column and concentrated via Centricon YM10
(Millipore, Bedford, MA ) to 260 µM. Biotinylated-TF binds to D3H44 Fab immobilized
directly on a Maxisorp plate (10 µg/ml in PBS, overnight at 4oC and blocked for 1 h at
25oC using Casein Blocker (Pierce, Rockford, IL)) with an EC50 of 11 nM.
For the Albumin/TF sandwich assay, rabbit albumin was immobilized as described
above. Dilutions of D3H44 Fab, D3H44-L or D3H44-Ls were added in Binding Buffer for
1 h. The plate was washed with PBS, 0.05% Tween 20 and 50 nM biotinylated-TF in
Binding Buffer was added for 1 h. The microtiter plate was washed with PBS, 0.05%
Tween 20 and Streptavidin/HRP was added. After a final wash, bound HRP was
measured as above.
Pharmacokinetics of D3H44 Variants in Rabbits and Mice - Groups of 3 NZW
rabbits were given an IV bolus of 400-525 ug/kg D3H44 variants (D3H44 Fab,
D3H44-L, D3H44-Ls) into the marginal ear vein. Plasma samples were obtained
from an arterial catheter placed in the contralateral ear over a 21 day period for
analysis by TF ELISA (see below). Individual plasma concentration versus time
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curves were fitted to a 2-compartment elimination model using WinNonlin v3.0
(Pharsight, Inc., Mountain View, CA). The pharmacokinetic parameters of
clearance (CL), volume of distribution (V1), steady state volume (Vss), elimination
half-life (t1/2), drug exposure (AUC), and AUC corrected for actual dose
administered (AUC/dose) were averaged for each treatment group. Differences
between groups were determined by ANOVA, with significance at p < 0.05.
Groups of 9 BalbC mice received a 5.0 mg/kg IV bolus of D3H44 F(ab) or D3H44-L
into the tail vein. Plasma samples were obtained by eye bleed from 3 mice per time-
point over 2-9 days, and assayed for concentration of D3H44 using the TF ELISA. The
average plasma concentration was obtained for each time-point and fitted to a 2-
compartment elimination model using WinNonlin v3.0. As the analysis of the mouse
experiment produces one average concentration versus time profile for each variant, PK
parameters are presented as a single estimate for the group of 9 mice.
Quantitation of D3H44 Variants - The concentration of D3H44 Fab, D3H44-L and
D3H44-Ls in rabbit plasma was determined using a TF ELISA. Maxisorp plates were
coated overnight at 4°C with 1 µg/ml TF (Genentech, Inc., South San Francisco, CA) in
50 mM sodium carbonate buffer, pH 9.6. Plates were blocked with 0.5% ovalbumin in
PBS, pH 7.4. Diluted antibody standards (0.23-50 ng/ml) and samples (minimum
dilution 1: 100) in PBS containing 0.5% ovalbumin, 0.05% polysorbate 20, 0.35 N NaCl,
5 mM EDTA, 0.25% CHAPS, 0.2% bovine γ-globulins (Sigma, St. Louis, MO) and 1%
plasma were added to the plates for 2 h. Antibody bound to the plates was detected
with HRP conjugated goat anti-human Fab’2 antibody (Jackson ImmunoResearch, West
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Grove, PA). Bound HRP was measured using the substrate 3,3',5,5'-tetramethyl
benzidine/H2O2 (Kirkegaard & Perry Laboratories, Gaithersburg, MD) and the change in
absorbance was monitored at 450 nm. Data falling in the linear range of the standard
curve was used to calculate D3H44 concentrations in the samples. D3H44 Fab and
D3H44-L in mouse plasma were assayed in the same ELISA except samples were
diluted in buffer without 1% plasma and the standard curve range was 0.31-40 ng/ml.
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RESULTS
Identification and Maturation of Peptides that Bind to Serum Albumin – Naïve peptide
phage library pools A through D were selected against rat, rabbit and human albumin.
Each pool, with the exception of pool D when human albumin was the target, showed
enrichment for each species of albumin. The sequences from the enriched pools
revealed in each case that a single clone had taken over the pool. The inferred peptide
sequences from these clones are shown in Table I.
Interestingly, albumin has greater than 70 percent amino acid sequence identity
between these species yet unique peptide sequences originating from within a given
phage library pool were identified for each species. The sequence similarity observed
between clones HB and HC, RA and RD, and RB and RC, despite their origins from
independent phage library pools, suggests the importance of the homologous residues
in binding to the respective species of albumin. Individual phage clones were examined
using a phage binding assay, a quick qualitative screen to assess species selectivity.
While phage clones generally bound only to the albumin for which they were selected,
clones HB and HC, selected for binding to human albumin, also bound to rat albumin
and clone RB, selected for binding to rat albumin, bound albumin from all 3 species
(Table I). None of the phage clones bound to structurally unrelated ovalbumin indicating
that the interaction with albumin was specific.
Because of its broad recognition of rat, rabbit and human albumin, clone RB was
chosen for sequence maturation on phage using ‘soft randomization’. The potential
diversity of a soft randomized library is the same as the starting naïve libraries,
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however, a soft randomized library maintains a bias towards a particular sequence, in
this case, DNA coding for the peptide sequence from clone RB. Sequences after 4
rounds of selection against rat, rabbit or human albumin are shown in Table II along
with results from the phage binding assay. All clones were specific for the albumin to
which they were selected based upon their lack of binding to immobilized ovalbumin
and casein; however, several clones also bound to albumin from other species including
bovine, rhesus and mouse albumin (Table II).
Since at any given position, the amino acid present in the parent sequence was
designed to appear approximately half the time in these libraries, only fully conserved
positions are likely to indicate important structural or contact elements that support
albumin binding. A final library that kept these highly selected residues (underlined)
constant X5DXCLPXWGCLWX4 while allowing all 20 amino acids at the 11 remaining
positions allowed a more extensive search of pertinent sequence space. The sequence
preferences at each randomized position resulting from selection against rabbit albumin
are shown in Figure 1. A similar profile was observed from sequences selected for
binding rat and human albumin (not shown). For each species of albumin, there was a
strong preference for Ile at position 7 and Arg at position 11, thus generating a core
consensus of DICLPRWGCLW. Additionally, there was a general preference for
negatively charged residues (Asp or Glu) at positions flanking this core, particularly on
the carboxy terminus.
Characterization of Albumin Binding Peptides – Several peptides patterned after the
sequences selected for albumin binding were synthesized. Their binding to human,
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rabbit and rat albumin was assessed by Biacore and a peptide competition assay was
used to assess their affinity for rabbit and mouse albumin (Tables III and IV). The IC50
values obtained for binding to rabbit albumin compared favorably to Kd values
determined by Biacore (Table III). In comparison to rabbit and rat albumin, the peptides
bind weaker to human and tighter to mouse albumin, however, the rank affinity of a
given peptide is generally maintained from species to species. Peptide SA15,
representing the consensus for binding rabbit albumin (Figure 1), had the lowest IC50
value in the peptide binding assay and highest affinity by surface plasmon resonance
for rabbit albumin (Table III). A linear peptide, identical to SA06, but with both Cys
residues changed to Ala had an IC50 greater than 50 µM demonstrating the importance
of the disulfide. In addition, the affinity of the peptides for rabbit albumin diminished with
reduction in the length of the peptides (Table IV). A core of about 10 amino acids (SA34
and SA19, Table IV) having an IC50 of ca. 25 µM, could be improved 6-fold by the
addition of 4 residues to its amino terminus (SA33) or 8.6-fold by the addition of 3
residues to its carboxy terminus (SA26). The addition of all 7 residues resulted in a 60-
fold improvement in the IC50 (SA22) indicating that these additions have an additive
effect.
Characterization of the Albumin Binding Site- When the binding of RB-B8 or RB-H1
phage to rabbit albumin was monitored over a pH range from 2.9 to 9.0, optimum
binding was observed above pH 6.0 for both clones (data not shown). Binding
decreased below pH 6.0 until no binding was observed at pH 2.9. A similar pattern was
observed for the binding of these clones to human and rat albumin. The similar amino
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acid preferences and pH profile are consistent with a similar binding environment on
each species of albumin.
Since albumin plays an important role as a carrier of many ligands and drugs, we
tested whether known albumin ligands might compete with peptide binding. Addition of
site I (indomethacin, phenylbutazone, warfarin) or site II (ibuprofen, L-tryptophan,
dansylsarcosine, diazepam) ligands, a fatty acid (myristic acid) or a metal ion (CuCl2) at
concentrations up to 100 µM had no effect on SA08b peptide binding to rat or rabbit
albumin in the peptide competition assay (not shown).
We were curious as to whether unrelated clones initially identified for binding to
albumin (Table I) might compete with our matured multi-species binding peptides. While
RD and BA phage selectively bind only to rat and rabbit albumin, respectively, these
clones were clearly blocked by the addition of SA08 (Figure 2). In contrast, binding of
clones HA and HB to human albumin was not blocked by SAO8 and thus bind to a
different site.
Pharmacokinetics of SA21 – In vivo, peptides can be rapidly metabolized or
eliminated due to glomerular filtration resulting in a short half-life. We hypothesized that
association with albumin would result in a peptide with improved pharmacokinetics and
chose to study SA21 because it was stable in citrated rabbit serum in vitro over a 24 h
period at 37oC as monitored by LC/MS/MS. With its high affinity for rabbit albumin
(Table III) and the high concentration of albumin in plasma, we calculated that SA21
should remain greater than 99.95% bound to rabbit albumin in vivo.
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The pharmacokinetic profile of SA21 in rabbit is shown in Figure 3 compared to an
unrelated control peptide of similar size, 1a (Ac-ALCDNPRIDRWYCQFVEG-NH2) and
an engineered variant which binds to albumin, 1m (an amino terminal napthalene acyl
sulfonamide derivative of 1a) (22). SA21 showed reduced clearance compared to 1a
and 1m with a significantly longer half-life of 2.3 h compared to 7.6 and 30 min,
respectively (Table V).
Characterization of Albumin Binding Fab Fusions—Compared to an IgG, Fab
fragments have relatively fast clearance of 42-72 ml/kg/h in rabbit (23). D3H44 (18) is a
humanized antibody that binds human tissue factor (TF) and acts as an anticoagulant.
To test whether association of the D3H44 Fab with albumin can increase its half-life in
vivo, the SA06 sequence was recombinantly fused through a short flexible linker to the
carboxy terminus of the light chain yielding D3H44-L. D3H44-Ls was also constructed
and lacks the disulfide linking the light and heavy chains of the Fab. D3H44-Ls was
designed to avoid potential folding problems that may be caused by the addition of a
disulfide bonded peptide. The addition of SA06 provided a simple purification scheme
utilizing a TF affinity column followed by an albumin affinity column. Although D3H44-L
and D3H44-Ls were judged to be greater than 90 percent pure following the TF affinity
column alone, only 14 percent of the D3H44-L was bound and retained on the
subsequent rabbit albumin affinity column in contrast to 54 percent of the D3H44-Ls.
The higher overall yield obtained with D3H44-Ls suggested improper folding of the
SA06 disulfide due to its proximity to the inter-chain disulfide between the heavy and
light chains.
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Following both column purification steps, D3H44-L was incubated with TF, rabbit
albumin or both, and analyzed by analytical gel filtration along with SDS-PAGE analysis.
The shift in the retention time of the eluting fractions was consistent with a 1:1
stoichiometry between D3H44-L and either TF or rabbit albumin, and a stoichiometry of
1:1:1 in the presence of both TF and rabbit albumin. For example, the retention time of
the peak that contained rabbit albumin and D3H44-L by SDS-PAGE analysis suggested
a molecular weight of 123 kDa compared to the calculated molecular weight of 119 kDa
for a 1:1 complex.
The affinity of purified Fab fusions for rabbit albumin and TF were examined in the
following assays. First, in comparison to SA06, both D3H44-L and D3H44-Ls had a
similar ability to compete for binding to immobilized rabbit albumin. In contrast, D3H44
Fab is unable to bind to rabbit albumin (Figure 4). Second, D3H44-L and D3H44-Ls not
only bind to TF, but inhibit its function to the same degree as D3H44 Fab (Figure 5a).
Third, to further investigate whether the binding of rabbit albumin to D3H44-L or D3H44-
Ls would preclude binding to TF, an albumin/TF sandwich assay was used (Figure 6). In
this assay, binding to immobilized rabbit albumin was detected with biotinylated TF. The
results demonstrate that D3H44-L and D3H44-Ls are able to simultaneously bind
albumin and TF whereas D3H44 Fab is unable to bind albumin and thus does not
generate a signal upon addition of biotinylated TF.
Consistent with these assays, D3H44-L and D3H44-Ls also prolong the prothrombin
time assay that measures TF dependent clotting in human plasma (Figure 5b). Since
D3H44-L and D3H44-Ls bind more tightly to rabbit than to human albumin, they were
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also tested in a prothrombin time assay using rabbit plasma where clotting was initiated
with human TF. Similar results were obtained (not shown). Taken together, D3H44-L
and D3H44-Ls have essentially equivalent combined functions of the D3H44 Fab and
an albumin binding peptide and these two functions do not interfere with each other.
Pharmacokinetic Analysis of D3H44 variants – The pharmacokinetics of D3H44 Fab,
D3H44-L and D3H44-Ls were compared in rabbits (Figure 7a, Table V). The clearance
of D3H44-L and D3H44-Ls decreased 58 and 43-fold and the half-life increased ca. 40-
fold to 32.4 and 38.3 h, respectively, compared to 0.8 h for D3H44 Fab (Figure 7a). In
mouse, D3H44-L had a 25-fold reduction in clearance compared to D3H44 Fab
consistent with the results obtained in the rabbits (Figure 7b and Table V). D3H44-L
had a half-life of 10.4 h, representing a 26-fold increase over the D3H44 Fab.
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DISCUSSION
A variety of albumin binding peptide phage were identified from the naïve peptide
libraries that were screened. During the affinity maturation of clone RB, which gave rise
to a series of peptides that recognize albumin from multiple species, the core sequence
DICLPRWGCLW was identified. Although a linear peptide, having both Cys substituted
with Ala indicated the importance of the disulfide, none of the matured peptides
examined by NMR, appeared to be structured in solution (N. Skelton, unpublished
result). Interestingly, SA08, a matured sequence derived from libraries patterned after
the sequence of the multi-species binding clone RB, inhibited the binding of clones RD
and BA which selectively bound rat and rabbit albumin, respectively. Although they
shared no sequence similarity they may share the same or overlapping binding site(s)
on albumin. SA08 does not appear to compete with classical site I or site II albumin
binding ligands, nor does it affect binding at fatty acid and metal binding sites. Peptide
binding to albumin is also unaffected over a broad pH range from 6 to 9. Apparently this
conserved peptide binding site on albumin is unique and remains unperturbed above pH
8 where albumin is known to undergo a conformational change (9). Whether
conformational changes in the structure of albumin at low pH or side chain titration
contributes to a loss of peptide binding remains to be determined.
Most peptides are rapidly cleared in vivo as a result of metabolism and renal filtration
(24). The 2.3 h half-life of SA21 in rabbit is relatively long when compared to other
peptides of similar size presumably owing to its association with albumin. The half-life of
the coagulation factor VIIa peptide exosite inhibitor 1a, for example, is only 7.6 min in
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rabbits but can be prolonged 4-fold by the addition of aromatic groups to its amino
terminus to induce binding to albumin (22). While both peptides were stable in citrated
rabbit serum for 24 h, differences in metabolism in vivo may occur. Alternatively,
differences in the affinities of SA21 and 1m for rabbit albumin may explain the superior
pharmacokinetic profile observed for SA21 (Figure 3); the affinity of 1m for rabbit
albumin was not reported.
In another example, the in vivo response to insulin was prolonged using insulin
derivatives acylated with fatty acids to enable association of the hormone with albumin
(14). Unlike these chemically modified peptides, however, the association of SA21 with
albumin is achieved through an amino acid peptide sequence that can simply be added
to any recombinantly expressed protein.
The ability to rapidly generate antibodies as potential therapeutics has stimulated
interest in extending their valence, binding affinity, effector functions and
pharmacokinetics through engineering. Their antigen binding domains can be readily
presented in numerous formats including Fv, scFv, diabodies, Fab and Fab’2. These
immunoglobin fragments as well as many other promising protein pharmaceuticals,
however, are rapidly cleared from the blood limiting their potential usefulness (25). To
test the possibility of extending the half-life of such molecules, an albumin binding
peptide was recombinantly fused to the carboxyl terminus of the light chain of the
D3H44 Fab directed against human tissue factor (TF) (18). The addition of SA06 to
D3H44 provided a simple purification scheme utilizing a TF affinity column followed by
an albumin affinity column. A higher overall yield was obtained with D3H44-Ls
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compared to D3H44-L likely due to the absence of the nearby disulfide between the
light and heavy chain of the Fab. The loss of this disulfide had no effect on the ability of
D3H44-Ls to bind to TF or albumin, but is associated with a 40% increase in drug
clearance relative to D3H44-L, as evidenced from the pharmacokinetic study in rabbit
(Table V). Rodrigues et al. (26) found that the pharmacokinetics of an Fab’2 lacking the
light chain–heavy chain disulfides was not affected and suggested that the stability of a
Fab’2 is not dramatically altered in the absence of this disulfide bond. In this study, we
observed a difference in the clearance as a result of the increased half-lives of the
D3H44-L and D3H44-Ls.
The utility of D3H44-L or D3H44-Ls greatly depends upon the capability of the
albumin bound fraction to bind TF. Both the prothrombin time assay and the albumin/TF
sandwich assay indicate D3H44-L and D3H44-Ls can bind to albumin and TF
simultaneously. Although not surprising given that the two binding sites are at different
ends of the Fab, the ability of the albumin bound fraction to remain functional may not
be retained when trying to enhance the half-life of other protein-peptide fusions. If an
increased half-life comes at the expense of impaired function, a higher dose may be
required to provide an efficacious concentration of free drug (8). The fraction of free
protein could be increased by using shorter peptides with reduced affinity for albumin
(Table IV), however, this is also likely to reduce the half-life.
Besides renal filtration, metabolism is an important parameter affecting half-life.
Although clearance is greatly reduced relative to the D3H44 Fab, both SA21 and
D3H44-L are cleared faster than one might expect simply based on their calculated free
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concentration in plasma and the glomerular filtration rate (GFR) in rabbit (27). The
pharmacokinetics of SA21 and D3H44-L are not influenced by binding to any in vivo
target other than albumin since D3H44 does not recognize rabbit TF. Based on these
assumptions, metabolism accounts for the vast majority of the clearance for both SA21
and D3H44-L.
Further, the faster clearance and shorter half-life of SA21 compared to D3H44-L is
seemingly at odds with their similar affinity for albumin and likely reflects an increased
metabolism of the peptide rather than differences in the rate of filtration. Susceptibility of
the peptide to metabolic proteolysis while bound to albumin may be shielded upon
fusion with the Fab or reduced as a result of the introduction of an amino terminal
fusion. As an example, stabilization of the 10 amino acid peptide hormone, GnRH,
which has a half-life of 2-8 min, was achieved by introducing carboxy terminal
modifications and other stabilizing changes to yield variants with half-lives over 4 h (28).
While association with albumin can extend the exposure of molecules in vivo, the
stability of these molecules can remain as a limiting feature that governs their half-life.
This study represents the first attempt to improve the half-life of an immunoglobulin
fragment without significantly altering the hydrodynamic size of the molecule. Through
the use of a simple recombinant fusion, selective tight binding to albumin and a
prolonged half-life are achieved. D3H44-L has a half-life of 32.4 h in rabbit or an
increase of 37-fold relative to the D3H44-Fab (Table V). This half-life is comparable to
that of a D3H44 Fab conjugated to 20k or 40k PEG and is superior to the half-life of a
D3H44 Fab’2 (half-lives of 18, 69 and 8.8 hr, respectively; L. Damico, unpublished
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result). In mouse, the 10.4 h half-life for D3H44-L represents a 26-fold improvement.
Interestingly, these half-lives correlate with the reported half-life of albumin in these
species of 5 to 6 days in rabbit (29) and 1 day in mouse (30). Despite potential
metabolism differences and the weaker affinity for human albumin (Table 3), the19-day
half-life for human albumin suggests large improvements in the half-life of a Fab in
human are possible.
Moreover, the ability to achieve an increased half-life without a dramatic increase in
size may present an advantage when trying to generate tumor targeting and imaging
molecules (25,31,32). A low molecular weight agent may have an advantage in its
ability to diffuse into tissues; however, a sufficient time of exposure is required for
adequate absorption. Generally, a small protein such as a scFv can diffuse rapidly into
tissues but the bulk of the material is lost due to extremely fast renal filtration. On the
other hand, an IgG remains circulating for several days providing ample exposure but
minimal tumor penetration due to the poor diffusion of such a large protein. A small
long-lived molecule, such as an albumin binding Fab, could be ideal as an imaging or
tumor-targeting agent.
ACKNOWLEDGMENTS
We are grateful to P. Sims for performing the TF ELISA, B. Commons for running the
LC/MS/MS, and P. Moran for prothrombin time assays. A. Arata, M. Reich and M.
Gonzales assisted in the pharmacokinetic studies. We thank C. Quan, J. Tom and K.
Zobel for synthesis of peptides, A. Zhong for DNA sequencing and R. Kelley for TF
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affinity column and TF (E219C). The support of M. Vanderlin, T. Zioncheck, and A. de
Vos is appreciated. Finally we especially thank R. Lazarus, M. Beresini and M. Koehler
for their support and many helpful discussions
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FIGURES
Figure 1. Amino acid preferences selected for binding rabbit albumin following
full randomization. Sequence preference following 4 rounds of selection on rabbit
albumin for the library: X5DXCLPXWGCLWX4, where all 20 amino acids were
substituted at X and underlined amino acids were held constant. Amino acids identified
at the indicated randomized positions are plotted as a function of their preference. The
preference for any amino acid is reported as the number of standard deviation units (σ)
above a random chance occurrence of a given residue assuming a binomial distribution
and accounts for codon bias and sampling statistics (33). Fixed amino acids in the
library are boxed. Only amino acids that occurred more frequently than 2 standard
deviations (2σ) above an expected random chance occurrence are shown.
Figure 2. Inhibition of RD and BA phage binding to rat or rabbit albumin.
RD (Ο), BA ( ), HA ( ) and HB ( ) phage binding to immobilized rat, rabbit or human
albumin, respectively, was inhibited by increasing concentrations of peptide SA08.
Relative phage binding was determined using the phage binding assay.
Figure 3. The pharmacokinetic profile of SA21 in Rabbit. The percent of initial
concentration of SA21 ( ), 1a ( ) and 1m (Ο) in plasma samples obtained from rabbits
following IV bolus administration is plotted versus time. Data obtained for SA21 is
compared to similar sized peptides reported by Koehler et al. (data replotted by
permission from author) (22). SA21 concentrations were determined by LC/MS/MS as
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described in methods. The concentration of 1a and 1m was determined using a binding
ELISA (16).
Figure 4. D3H44-L and D3H44-Ls bind to Rabbit Albumin with similar affinity to
SA06. A comparison of SA06 (Ο), D3H44-L ( ), D3H44-Ls (∆, dashed line) and D3H44
Fab ( ) in the peptide competition assay using immobilized rabbit albumin. Lines drawn
represent the data fit to a four-parameter equation from which the following IC50 values
were calculated for this representative data set: SA06 = 80 nM, D3H44-L = 130 nM,
D3H44-Ls = 50 nM and D3H44 Fab > 100 µM.
Figure 5. Effect of D3H44-L and D3H44 Fab on FX Activation and the
prothrombin time (PT). (A) Inhibition of TF•FVIIa mediated FX activation by D3H44-L
( ), D3H44-Ls (∆, dashed line) and D3H44 Fab ( ). Data from 3 independent
experiments was fit to a four-parameter equation from which the following IC50 values
were calculated: D3H44-L = 0.38 nM, D3H44-Ls = 0.33 nM and D3H44 Fab = 0.23 nM.
(B) The fold prolongation of TF-dependent clotting by D3H44-L ( ), D3H44-Ls (∆) and
D3H44 Fab ( ) in the human PT assay. Uninhibited clotting time was 9.6 s.
Figure 6. D3H44-L can bind Tissue Factor and Albumin Simultaneously. The
binding of D3H44-L ( ), D3H44-Ls (∆, dashed line) and D3H44 Fab ( ) to immobilized
rabbit serum albumin was detected using biotinylated-TF followed by streptavidin-HRP.
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Figure 7. Pharmacokinetics of D3H44-L and D3H44 Fab in Rabbit and Mouse. (A)
D3H44-L ( ), D3H44-Ls (∆, dashed line) and D3H44 Fab ( ) were dosed at 0.40-0.52
mg/kg into New Zealand white rabbits (3 rabbits/group). (B) D3H44-L ( ) and D3H44
Fab ( ) were dosed at 5 mg/kg into balbC mice (9 mice/group). Samples taken at the
indicated times were assayed in a TF ELISA.
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REFERENCES
1. Syed, S., Schuyler, P., Kulczycky, M., and Sheffield, W. P. (1997) Blood 89,
3243-3252
2. Yeh, P., Landais, D., Lemaitre, M., Maury, I., Crenne, J.-Y., Becquart, J., Murry-
Brelier, A., Boucher, F., Montay, G., Fleer, R., Hirel, P.-H., Mayaux, J.-F., and
Klatzmann, D. (1992) Proc. Natl. Acad. Sci. USA 89, 1904-1908
3. Ashkenazi, A., and Chamow, S. M. (1997) Curr. Opin. in Immunol. 9, 195-200
4. Keyt, B. A., Paoni, N. F., Refino, C. J., Berleau, L., Nguyen, H., Chow, A., Lai, J.,
Pena, L., Pater, C., Ogez, J., Etcheverry, T., Botstein, D., and Bennett, W. (1994)
Proc. Natl. Acad. Sci. USA 91, 3670-3674
5. Clark, R., Olson, K., Fuh, G., Marian, M., Mortensen, D., Teshima, G., Chang, S.,
Chu, H., Mukku, V., Canova-Davis, E., Somers, T., Cronin, M., Winkler, M., and
Wells, J. A. (1996) J. Biol. Chem. 271, 21969-77
6. Lee, L. S., Conover, C., Shi, C., Whitlow, M., and Filpula, D. (1999) Bioconjugate
Chem. 10, 973-981
7. Tanaka, H., Satake-Ishikawa, R., Ishikawa, M., Matsuki, S., and Asano, K. (1991)
Cancer Res. 51, 3710-3714
8. Rowland, M. (ed) (1988) Clinical pharmacokinetics: concepts and applications,
2nd Ed., Lea & Febiger, Philadelphia
9. Peters, T., Jr. (1985) Adv. Prot. Chem. 37, 161-245
10. Peters, T., Jr. (1996) All about albumin, Academic Press, Inc., San Diego
by guest on January 8, 2020http://w
ww
.jbc.org/D
ownloaded from
JBC 31 7/9/02
11. Makrides, S. C., Nygren, P.-A., Andrews, B., Ford, P. J., Evans, K. S., Hayman,
E. G., Adari, H., Levin, J., Uhlen, M., and Toth, C. A. (1996) J. Pharmacol. Exp.
Ther. 277, 534-542
12. Sjolander, A., Nygren, P.-A., Stahl, S., Berzins, K., Uhlen, M., Perlmann, P., and
Andersson, R. (1997) J. Immunol. Methods 201, 115-123
13. Kurtzhals, P., Havelund, S., Jonassen, I., Kiehr, B., Larsen, U. D., Ribel, U., and
Markussen, J. (1995) Biochem. J. 312, 725-731
14. Markussen, J., Havelund, S., Kurtzhals, P., Andersen, A. S., Halstrom, J.,
Hasselager, E., Larsen, U. D., Ribel, U., Schaffer, L., Vad, K., and Jonassen, I.
(1996) Diabetologia 39, 281-288
15. Lowman, H. B., Chen, Y. M., Skelton, N. J., Mortensen, D. L., Tomlinson, E. E.,
Sadick, M. D., Robinson, I. C. A. F., and Clark, R. G. (1998) Biochemistry 37,
8870-8878
16. Dennis, M. S., Eigenbrot, C., Skelton, N. J., Ultsch, M. H., Santell, L., Dwyer, M.
A., O'Connell, M. P., and Lazarus, R. A. (2000) Nature 404, 465-470
17. Dennis, M. S., Roberge, M., Quan, C., and Lazarus, R. A. (2001) Biochemistry
40, 9513-21
18. Presta, L., Sims, P., Meng, Y. G., Moran, P., Bullens, S., Bunting, S., Schoenfeld,
J., Lowe, D., Lai, J., Rancatore, P., Iverson, M., Lim, A., Chisholm, V., Kelley, R.
F., Riederer, M., and Kirchhofer, D. (2001) Thromb. Haemost. 85, 379-89
19. Kunkel, T. A., Roberts, J. D., and Zakour, R. A. (1987) Methods Enzymol. 154,
367-382
by guest on January 8, 2020http://w
ww
.jbc.org/D
ownloaded from
JBC 32 7/9/02
20. Aida, Y., and Pabst, M. J. (1990) J. Immunol. Methods 132, 191-5
21. Kelley, R. F. (1994) Methods 6, 111-120
22. Koehler, M. F. T., Zobel, K., Beresini, M. H., Caris, L. D., Combs, D., Paasch, B.
D., and Lazarus, R. A. (2002) BioOrg. Chem. Letters (in press)
23. Timsina, M. P., and Hewick, D. S. (1990) J. Pharm. Pharmacol. 42, 572-6
24. Lee, V. H. L. (1990) in Peptide and Protein Drug Delivery (Lee, V. H. L., ed), pp.
1-56, Marcel Dekker, New York
25. Adams, G. P., and Schier, R. (1999) J. of Immunol. Methods 231, 249-260
26. Rodrigues, M. L., Snedecor, B., Chen, C., Wong, W. L., Garg, S., Blank, G. S.,
Maneval, D., and Carter, P. (1993) J. Immunol. 151, 6954-61
27. Davies, B., and Morris, T. (1993) Pharm. Res. 10, 1093-1095
28. Friedman, A. J. (1990) in In Gonadotropin Releasing Hormone Analogs,
Applications in Gynecology (Barbieri, R. L., and Friedmann, A. J., eds), pp. 1-15,
Elsevier, New York
29. Hatton, M. W. C., Richardson, M., and Winocour, P. D. (1993) J. Theor. Biol.
161, 481-490
30. Stevens, D. K., Eyre, R. J., and Bull, R. J. (1992) Fundam. Appl. Toxicol. 19,
336-342
31. Jain, R. K. (1989) J. Nat. Cancer Institute 81, 570-576
32. Wu, A. M., and Yazaki, P. J. (2000) Quart. J. Nucl. Med. 44, 268-83
33. Lowman, H. B., and Wells, J. A. (1993) J. Mol. Biol. 234, 564-578
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Table I. Sequences of phage clones selected from polyvalent naïve libraries for binding
rat, rabbit or human albumin.
The location of fixed cysteines from the library design are shaded. Sequence identity among clonesderived from different phage libraries is boxed. A qualitative assessment of the ability of phage bearingthe indicated peptide sequence to bind human (HSA), rabbit (BuSA) or rat (RSA) albumin is indicated.
Library Phage Binding
Pool Clones Selected for Binding to Human Serum Albumin HSA BuSA RSA
HA E V R S F C T D W P A E K S C K P L R G +++ - -
HB R A P E S F V C Y W E T I C F E R S E Q ++ - (+)
HC E M C Y F P G I C W M +++ - ++
Clones Selected for Binding to Rabbit Serum Albumin
BA G E N W C D S T L M A Y D L C G Q V N M - +++ -
BB M D E L A F Y C G I W E C L M H Q E Q K - +++ -
BC D L C D V D F C W F - +++ -
BD K S C S E L H W L L V E E C L F - +++ -
Clones Selected for Binding to Rat Serum Albumin
RA R N E D P C V V L L E M G L E C W E G V - - +++
RD D T C V D L V R L G L E C W G - - +++
RB Q R Q M V D F C L P Q W G C L W G D G F + ++ +++
RC D L C L R D W G C L W - - +++
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Table II. Sequences of phage clones selected for binding rat, rabbit or human albumin following soft randomization of clone RB.
Amino acids positions identical in clone RB, the starting sequence used for soft randomization are shaded. A qualitative assessment of the ability of phage bearing the indicated peptide sequence to bind different species of albumin is indicated (nd indicates not determined). Abbreviations indicate human (HSA), rabbit (BuSA), rat (RSA), bovine (BSA), rhesus (RhSA ) and mouse (MSA) albumin.
Phage BindingClone RB Q R Q M V D F C L P Q W G C L W G D G F HSA BuSA RSA BSA RhSA MSA
Clones Selected for Binding to Human Serum AlbuminRB-H1 Q R H P E D I C L P R W G C L W G D D D ++ +++ +++ ++ +++ +++RB-H6 N R Q M E D I C L P Q W G C L W G D D F ++ +++ +++ ++ +++ +++
Clones Selected for Binding to Rabbit Serum AlbuminRB-B2 Q R L M E D I C L P R W G C L W G D R F ++ +++ +++ nd nd ndRB-B5 Q W H M E D I C L P Q W G C L W G D V L ++ +++ +++ - +++ +++RB-B6 Q W Q M E N V C L P K W G C L W E E L D ++ +++ +++ ++ +++ +++RB-B4 L W A M E D I C L P K W G C L W E D D F ++ +++ +++ ++ +++ +++RB-B7 L R L M D N I C L P R W G C L W D D G F ++ +++ +++ ++ +++ +++RB-B8 H S Q M E D I C L P R W G C L W G D E L ++ +++ +++ +++ +++ +++RB-B11 Q W Q V M D I C L P R W G C L W A D E Y ++ +++ +++ ++ +++ +++RB-B12 Q G L I G D I C L P R W G C L W G D S V ++ +++ +++ +++ +++ +++RB-B16 H R L V E D I C L P R W G C L W G N D F ++ +++ +++ nd nd ndRB-B9 Q M H M M D I C L P K W G C L W G D T S + +++ +++ nd nd ndRB-B14 L R I F E D I C L P K W G C L W G E G F + +++ +++ nd nd ndRB-B3 Q S Y M E D I C L P R W G C L S D D A S + +++ +++ nd nd ndRB-B10 Q G D F W D I C L P R W G C L S G E G Y - +++ +++ nd nd ndRB-B1 R W Q T E D V C L P K W G C L F G D G V - +++ +++ nd nd nd
Clones Selected for Binding to Rat Serum AlbuminRB-R8 Q G L I G D I C L P R W G C L W G D S V ++ +++ +++ +++ +++ +++RB-R16 L I F M E D V C L P Q W G C L W E D G V + +++ +++ + +++ +++RB-R10 Q R D M G D I C L P R W G C L W E D G V ++ +++ +++ ++ +++ +++RB-R4 Q R H M M D F C L P K W G C L W G D G Y - + +++ nd nd ndRB-R7 Q R P I M D F C L P K W G C L W E D G F - + +++ nd nd ndRB-R11 E R Q M V D F C L P K W G C L W G D G F - + +++ nd nd ndRB-R12 Q G Y M V D F C L P R W G C L W G D A N - + +++ nd nd ndRB-R13 K M G R V D F C L P K W G C L W G D E L - + +++ nd nd ndRB-R15 Q S Q L E D F C L P K W G C L W G D G F - + +++ nd nd ndRB-R17 Q G G M G D F C L P Q W G C L W G E D L - + +++ nd nd ndRB-R5 Q R L M W E I C L P L W G C L W G D G L - - +++ nd nd ndRB-R18 Q R Q I M D F C L P H W G C L W G D G F - - +++ nd nd ndRB-R2 G R Q V V D F C L P K W G C L W E E G L - - +++ nd nd ndRB-R3 Q M Q M S D F C L P Q W G C L W G D G Y - - +++ nd nd ndRB-R9 K S R M G D F C L P E W G C L W G D E L - - +++ nd nd ndRB-R1 E R Q M E D F C L P Q W G C L W G D G V - - +++ nd nd ndRB-R14 Q R Q V V D F C L P Q W G C L W G D G S - - +++ nd nd nd
Peptide Competition Assay Surface Plasmon Resonance
PEPTIDE Sequence BuSA MSA HuSA BuSA RSA
IC50 (nM) Kd (nM)SA21 Ac-R L I E D I C L P R W G C L W E D D -NH2 270 ± 110 7 ± 2 467 ± 47 320 ± 22 266 ± 8
SA06 Q R L M E D I C L P R W G C L W E D D F -NH2 130 ± 50 6 ± 2 803 ± 62 143 ± 5 229 ± 9
SA08 Ac-Q G L I G D I C L P R W G C L W G D S V K -NH2 51 ± 11 12 ± 2 858 ±59 108 ± 5 158 ± 3
SA15 G E WW E D I C L P R W G C L W E E E D -NH2 13 ± 12 5 ± 1 878 ± 58 65 ± 3 150 ± 5
Table III. Comparison of the peptide competition assay with Biacore for selected peptides.
Selected peptides were tested for binding human (HSA), rabbit (BuSA), rat (RSA) and mouse (MSA) albumin using the peptide competition assay or surface plasmon resonance as indicated and described in the methods.
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PEPTIDE Sequence IC50 (nM)
SA20 Ac- Q R L I E D I C L P R W G C L W E D D F 260SA21 Ac- R L I E D I C L P R W G C L W E D D 270 ± 110SA22 Ac- R L I E D I C L P R W G C L W E D 430 ± 170SA29 Ac- R L I E D I C L P R W G C L W E 400 ± 90SA31 Ac- R L I E D I C L P R W G C L W 200SA33 Ac- R L I E D I C L P R W G C L 4310 ± 2770SA35 Ac- R L I E D I C L P R W G C >250000
SA23 Ac- L I E D I C L P R W G C L W E D 360 ± 140SA24 Ac- I E D I C L P R W G C L W E D 1380 ± 410SA25 Ac- E D I C L P R W G C L W E D 2730 ± 1300SA26 Ac- D I C L P R W G C L W E D 3120 ± 660SA27 Ac- I C L P R W G C L W E D 86700 ± 21800SA28 Ac- C L P R W G C L W E D >400000
SA30 Ac- I E D I C L P R W G C L W E 1800 ± 590SA32 Ac- E D I C L P R W G C L W 2170 ± 520SA04 D I C L P R W G C L W 8540 ± 4620SA34 Ac- D I C L P R W G C L 28210 ± 6500SA19 D I C L P R W G C L 24510 ± 2100SA18 I C L P R W G C L W 124900SA36 Ac- I C L P R W G C >250000
-NH2-NH2
-NH2-NH2
-NH2
-NH2-NH2-NH2
-NH2-NH2-NH2-NH2
-NH2-NH2
-NH2
-NH2
-NH2-NH2
-NH2-NH2
Table IV. The effect of peptide length on binding rabbit albumin in the peptide competition assay.
SA21 D3H44 Fab D3H44-L D3H44-Ls
Parameter Units Average Stdev Average Stdev Average Stdev Average Stdev
Dose mg/kg 2.00 0.40 0.42 0.52
AUC/Dose (hr*ug/mL)/(mg/kg) 77.7 4.1 14.80 3.1 840 78 633 157
CL mL/hr/kg 12.9 0.7 69.9 16.2 1.20 0.11 1.64 0.37t1/2 hr 2.31 0.24 0.876 0.213 32.4 3.2 38.3 8.8V1 mL/kg 42.8 2.9 90.6 38.4 56.2 10.1 87.6 1.7Vss mL/kg 221 95 113 7 176 11
PK Parameters in Mouse
PK Parameters in Rabbit
Fab D3H44-L
Parameter Units Estimate Estimate
Dose mg/kg 5.0 5.0
AUC/Dose (hr*ug/mL)/(mg/kg) 8.49 214
CL mL/hr/kg 118 4.68t1/2 hr 0.398 10.4V1 ml/kg 67.6 70.4Vss ml/kg 151 138
Table V. Pharmacokinetic Parameters from Rabbit and Mouse Studies.
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Figure 1.
0
5
10
15
20
AG EG L W LW D G LW D EG D I C L P KR WGC LW D EG D E D EG AD EN
1 2 3 4 5 7 11 17 18 19 20
Pre
fere
nce
(∆ σ
)
Figure 2.
0.0
0.2
0.4
0.6
0.8
1.0
1.2
10-1
100
101
102
103
104
Concentration SA08 (nM)
Rel
ativ
e P
hage
Bin
ding
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Figure 3.
0.1
1
10
100
0 1 2 3 4 5 6 7Time (hr)
Con
cent
ratio
n (m
g/m
l)
Figure 4.
0
0.2
0.4
0.6
0.8
1
1.2
10-1 100 101 102 103 104 105
Concentration (nM)
Rel
ativ
e B
indi
ng to
Rab
bit A
lbum
in
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Figure 5a.
0
0.2
0.4
0.6
0.8
1
0.001 0.01 0.1 1 10 100 1000
D3H44 (nM)
FX
act
ivat
ion
(vi/v
o)
Figure 5b.
Fol
d P
rolo
ngat
ion
0
2
4
6
8
10
0.001 0.01 0.1 1 10
D3H44 (µM )
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Figure 6.
0
0.1
0.2
0.3
0.4
0.5
10 -4 10 -2 10 0 10 2 10 4
D3H44 (nM)
Abs
orba
nce
(405
nm
)
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Figure 7a & b.
0.01
0.1
1
10
0 7 14 21Time (day)
D3H
44 (
µg/
ml)
0.1
1
10
100
0 24 48 72 96 120 144 168
Time (h)
D3H
44 (
mg/
ml)
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Dan Combs and Lisa A. DamicoMark S. Dennis, Min Zhang, Y. Gloria Meng, Miryam Kadkhodayan, Daniel Kirchhofer,
Albumin binding as a general strategy for improving the pharmacokinetics of proteins
published online July 15, 2002J. Biol. Chem.
10.1074/jbc.M205854200Access the most updated version of this article at doi:
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