vivo: enabling national networking of scientists
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VIVO: Enabling National Networking of Scientists. Michael Conlon, PhD Principal Investigator [email protected]. The Goal Improve all of science by providing the means for sharing and using current, accurate and precise information regarding scientists’ interests, activities and accomplishments - PowerPoint PPT PresentationTRANSCRIPT
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VIVO: Enabling National Networking of Scientists
Michael Conlon, PhDPrincipal Investigator
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National Networking of Scientists• The Goal▫ Improve all of science by providing the means for sharing and using current,
accurate and precise information regarding scientists’ interests, activities and accomplishments
• National Networking of Scientists▫ $12.3M 2-year ARRA/NCRR award, 9/25/2009▫ Seven schools▫ Extend VIVO software from Cornell to provide information by scientists for
scientists▫ Foster team science by providing tools for identifying potential collaborators▫ Improve collaboration by creating tools using this information for enhancing
new and existing teams ▫ Facilitate the science of team science
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VIVO Software for National Networking• Developed at Cornell in 2004▫ Find faculty by interests,
activities, accomplishments• Release 1 to 7 schools now▫ Standard ontology▫ Local search▫ Application support
• Release 2, open adoption▫ Federated identity▫ Network search▫ Grouping, interfaces
• Release 3, national network▫ Most requested features
VIVO at Cornell: http://vivo.cornell.edu
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Future application -- Find Scientists
Semantic search finds only items of interest.
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Future application -- Understand Collaborations
A sample PI/Co-PI network
More recent collaborations are lighter in color
Larger circles indicate larger awards
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Future application – Route Info
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Future application -- Simplify Tasks• Information in VIVO can be
used to create▫ Biosketches▫ Vitas▫ Annual reports▫ Department and research
group web sites• Information can be used to
populate profiles in collaborative tools – portals, wikis, …
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How The National Network works: Structured Information Architecture
• Ontologies▫ FOAF, SKOS, MESH, …
• Semantic Web▫ RDF, RDFS, OWL, SPARQL, …
• Federated Identity Management▫ SAML 2.0, Shibboleth, …
• Interoperability▫ Identity, Semantics, Applications
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Institutional Architecture• Three sources of
VIVO information▫ User data▫ Institutional data▫ Provider data
• Two formats for output▫ Web Pages for users▫ Resource
Description Framework for applications
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National Architecture• National Network
Users access applications
• Applications access standard information
• VIVOs are independent
• Apps are independent
• Other systems can provide information according to standards
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National Networking Team
•University of Florida, Gainesville, FL• Cornell University, Ithaca, NY• Ponce Medical School, Ponce, PR • Indiana University, Bloomington, IN•Washington University, St Louis, MO•Weill-Cornell Medical College, NY, NY• The Scripps Research Institute, La Jolla, CA
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Collaboration and CoordinationOpen engagement to foster national networking• Inventory of Resources – Eagle-I, Lee Nadler, Harvard•Federal agencies – NIH, NSF, …•Search Providers – Google, Bing, Yahoo, …•Professional Societies – AAAS, …•Publishers – Elsevier, Thomson Reuters, Collexis, …•Semantic Web community – DERI, Linked Data, …•Consortia of schools – SURA, CTSA, CIC, FLR, …•Existing service providers – over 40
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Sustainability• Information is institutionally hosted and maintained
to benefit the institution and its scientists•VIVO software is open source, community
maintained•National network applications can be commercial or
open source• Institutions may use open source, commercial
versions of VIVO, or other platforms that provide data to the national network
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Project Status•Development Interfaces, packaging at UF, ontology
and social networking at Indiana, semantic web, user experience at Cornell
• Implementation Cornell (existing), UF (underway), Indiana (11/2009), Washington U (11/2009), Weill (12/2009), Scripps (1/2010), Ponce (1/2010)
•Outreach Presentations, inquiries, collaboration•Governance TAB, SAB, EAB•Evaluation Washington Univ.•Visit www.vivoweb.org
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Establishing national networking of scientists will significantly improve all of biomedical research in the United States by providing opportunities across all disciplines to identify existing and on-going work, identify potential new collaborations and improve and extend existing collaborations. National networking gives scientists critical new information regarding current scientific activity to improve science, knowledge and human health.