ucsc genome browser and human genome bioinformatics

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ACCOMMODATION

HOW TO REACH MANIPAL

ADDRESS OF CORRESPONDENCE

Participants have to make their own arrangementfor accommodation. We recommend to contact thehotels directly for accommodation. Please visit

http://www.manipal.edu/CAMPUSLIFE/Page/Visito

rsStay.aspx for details.

Manipal is well connected by road with other parts of

the country. Daily bus services from Bangalore,Mysore, Mumbai, Goa and Kerala are provided bystate and private bus companies. Nearest railway

station is Udupi which is at a distance of 3 km fromManipal. Nearest airport is Mangalore which is 65km from Manipal. Bus and taxi services areavailable from the airport & railway station.

Dr Girisha KM, Division of Medical Genetics,Department of Pediatrics, Kasturba Medical

College, Manipal University, Manipal-576104, India.Email: [email protected], Telephone:

0820-2923149

UCSC Genome Browserand Human Genome

Bioinformatics Workshop

Kasturba Medical College, Manipalth th

16 -17 November 2013

Organized by

Kasturba Medical College

Manipal University, Manipal

Indian Academy of Medical GeneticsShefins Manipal, 0820-2573301


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FACULTY

Dr. Ramdas M PaiChancellorManipal University

Dr. H S BallalPro Chancellor

Manipal University

Dr. K RamnarayanVice ChancellorManipal University

Dr. H Vinod BhatPro Vice Chancellor

Manipal University

Dr. G K PrabhuRegistrarManipal University

Dr. G Pradeep KumarDean

KMC, Manipal

ChairpersonDr. Pushpa G KiniHeadDepartment of PediatricsKMC, Manipal

Organizing SecretaryDr. Girisha KM

Division of Medical GeneticsDepartment of Pediatrics

KMC, Manipal

PATRONS

Last date for registrationth

Early bird: 30 September 2013st

Last date: 31 October 2013

VenueInteract Lecture Hall, Kasturba Medical College, Manipal

ABOUT THE WORKSHOPBioinformatics tools and web resources have become an

integral part of professional lives of human geneticists.

This workshop is organized as a part of diamond jubilee

celebrations of Kasturba Medical College, Manipal. The

workshop aims to provide a hands-on experience on

University of California Santa Cruz (UCSC) Genome

Browser, a widely used web interface. In addition, the

participants will have demonstrations on use of bio-

informatics tools related to next generation sequencing,

genomic microarray, mutation analysis and protein

modeling. The workshop has excellent faculty from USA,

UK and India. Both basic and advanced topics in the area

of medical genetics will be discussed with ample time to

work on computers and for interactions.

HIGHLIGHTSIntroduction to bioinformatics tools and common termsUCSC Genome Browser, navigation and

searching, viewing your own data in Custom Tracksand saving Sessions for re-use and sharing withcolleaguesUCSC Genome Browser: use of the Table Browser for

data-mining, including intersections and filtering,advanced Custom Tracks and Track Data hubs.Data handling for high-throughput sequencingdata sets will be discussed, including support ofuser hosted large data sets in BAM, VCF, bigBed andbigWig formatsBioinformatics tools related to next generation

sequencingPrediction of the effects of human missense mutations

Analysis of protein structural contexts of pathogenicmutationsAnalysis of copy number variations and SNPsBioinformatics tools for the medical geneticist in

diagnosis and research

TARGET GROUP

The target audience are researchers working in the field ofmedical genetics, human genetics and clinical genetics.

Participants should have basic knowledge of computersand internet browsing. The participants are expected tobring their own laptops. Access to Wi-Fi services will beprovided. To optimize the hands-on training to theparticipants, limited registrations are available andselection is purely on first come first served basis.

Sanjeev Bhaskar,Lead, Bioinformatics Group, GenomicDiagnostics Laboratory, Manchester Centre for GenomicMedicine, Central Manchester University Hospitals, NHSFoundation Trust, Saint Mary's Hospital, Manchester, UK.

Ashwin Dalal, Head, Diagnostics Division, Centre forDNA Fingerprinting & Diagnostics, Hyderabad.

Satyamoorthy K, Director, School of Life Sciences,Manipal University, Manipal.

Robert Kuhn, Associate Director, UCSC GenomeBrowser Center for Biomolecular Science & Engineering,Baskin School of Engineering, CA, USA.

H A Nagarajaram, Group Leader, Laboratory ofComputational Biology & Bioinformatics Facility, Centrefor DNA Fingerprinting & Diagnostics, Hyderabad.

Shubha R Phadke, Head, Department of MedicalGenetics, Sanjay Gandhi Postgraduate Institute ofMedical Sciences, Lucknow.


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UCSC Genome Browser and Human Genome

Bioinformatics WorkshopKasturba Medical College, Manipal

th th16 -17 November 2013

thRegistration Fee: Registration fee is Rs. 6000 for early birds (up to 30 September 2013), which includes registration, breakfast and lunchth th st

on 16 and 17 November 2013. Registration fee is Rs. 10000 up to 31 October 2013.

Mode of payment:

1. Bank Transfer

Bank Name : ICICI Bank Ltd, Manipal

Bank Account Name : Kasturba Medical College

Account Number : 007201007584

RTGS/NEFT/IFSC No. of Branch : ICIC0000072

Amount and details of transaction : _______________________

Demand Draft No : __________________________ ____ Bank Name : ___ __

Amount : _________________________________________________ Date : ___________________________________________

Signature : __________________________

_________ ___________________________________

Kindly send the Registration form and Demand draft/Payment details to:

Dr. Girisha KMDivision of Medical Genetics

Department of Pediatrics

Kasturba Medical College

Manipal University

Manipal - 576 104, India

Email: [email protected]

Telephone: 0820-2923149

2. Demand draft in favor of Kasturba Medical College, payable at Manipal or Udupi.

Name : __________________________________________ ___________ _________________________

__________________________________________________________________________________________________

_____________________________________________________________________________________________

__________________________________________________________________________________________________________

Phone (O) : _____________________________________________________ Mobile : ____________________________________

Email : _______________________________________________________ Qualification : _________________________________

Field of Specialization : ________________________________________________________________________________________

__________________ _____

Affiliation :

Postal Address :

ucsc genome browser and human genome bioinformatics

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