tyler phringe fri 1120
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PHRINGE Synteny toolhttp://oomycetes.genomeprojectsolutions-databases.com/
[top half of home page]
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PhiGS Synteny toolhttp://oomycetes.genomeprojectsolutions-databases.com/
[top half of home page] Entry to browser
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source species
for display
gaps in synteny
pixels for display
target species
Units are gene models not sequence length
colored models have orthologs
grey models have no orthologs
Models are color coded by matching scaffold
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End position setting controls how many gene models are packed into the display window
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Mouse-over scaffold name gives pop-up of scaffold info
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Mouse-over gene model gives pop-up of brief gene model info
Click on gene model links todetailed gene model info
Hint: if the gene model bars are too narrow to do this easily, zoom in
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Scaffold and coordinates
Protein ID
PhiGs gene number
Clickable link to source database
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List of hits in source species and several target species
Hits link to databases
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Avr1b
P.sojae and P. ramorum preserve gene order except in the vicinity of virulence genes
P.sojae and P. ramorum preserve gene order except in the vicinity of virulence genes
14
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188
100
Avh72
Avh277 (sc 1079)Use of the synteny map to track down Avr1a
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Ps v1 Sc55
Pi v1contig1.1
Ha v6 Sc9
Pr v1 Sc1
Pr v1 Sc104
100 149
368 14
683 737
Ps v1Sc137
26 1
1
32
HaRxL23PrAvh388
PsAvh73 PiRxLRdEER_192
Synteny among oomycete genomes
a very few RXLR effectors are syntenic
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