tracing the signals of brain evolution in eutherian mammals
TRANSCRIPT
s Data import package (FETCHSEQ) <-‐ Today
s ConCat Utility
s Network construction package (EvoIntNet)
s Coevolution study (Biology)
Brain Evolution Herculano-‐Houzel (2012) PNAS
Edited, based on Imported tree 1
Sarcophilus harrisiiMonodelphis domesticaDasypus novemcinctusTrichechus manatusLoxodonta africanaEchinops telfairiChrysochloris asiaticaOrycteropus aferElephantulus edwardiiCondylura cristataSorex araneusErinaceus europaeusCeratotherium simumEquus przewalskiiEquus caballusPanthera tigrisFelis catusCanis lupusUrsus maritimusAiluropoda melanoleucaMustela putoriusLeptonychotes weddelliiOdobenus rosmarusPteropus alectoEptesicus fuscusMyotis davidiiMyotis brandtiiMyotis lucifugusVicugna pacosCamelus dromedariusCamelus bactrianusCamelus ferusSus scrofaBalaenoptera acutorostrataPhyseter catodonLipotes vexilliferTursiops truncatusOrcinus orcaPantholops hodgsoniiOvis ariesCapra hircusBubalus bubalisBos taurusBison bisonBos mutusTupaia chinensisOchotona princepsOryctolagus cuniculusSpermophilus tridecemlineatusHeterocephalus glaberFukomys damarensisCavia porcellusChinchilla lanigeraOctodon degusJaculus jaculusNannospalax galiliRattus norvegicusMus musculusMicrotus ochrogasterPeromyscus maniculatusMesocricetus auratusCricetulus griseusGaleopterus variegatusOtolemur garnettiiTarsius syrichtaCallithrix jacchusSaimiri boliviensisRhinopithecus roxellanaChlorocebus sabaeusPapio anubisMacaca fascicularisMacaca mulattaNomascus leucogenysPongo abeliiGorilla gorillaPan troglodytesPan paniscusHomo sapiens CCDS
Results Gene dN/dS dS GC
ASPM -‐0.0304, 0.57 0.235, 0.75 0.23, 0.81
CEP152 0.31, 0.83 0.0909, 0.6 0.272, 0.77
CEP63 0.184, 0.74 0.402, 0.83 -‐0.106, 0.68
STIL -‐0.546, 0.87 0.784, 1 -‐0.627, 1
CENPJ -‐0.228, 0.77 0.335, 0.82 -‐0.124, 0.65
MCPH1 0.114, 0.63 0.309, 0.8 0.311, 0.87
CDK5RAP2 -‐0.305, 0.9 0.31, 0.71 0.204, 0.85
WDR62 -‐0.00431, 0.53 0.395, 0.89 -‐0.0242, 0.51