thoughts on the third international conference on biomedical ontology (icbo) for the avi
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Thoughts on the Third International Conference on Biomedical Ontology (ICBO) for the AVI. July 21-25, 2012 Graz, Austria Suzanne Santamaria, DVM, MS Veterinary Terminologist (and Ontologist). Thoughts On Attending the ICBO. Gained knowledge Made connections Future work/collaboration. - PowerPoint PPT PresentationTRANSCRIPT
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August 28, 2012
Thoughts on the ThirdInternational Conference on Biomedical Ontology(ICBO) for the AVIJuly 21-25, 2012Graz, Austria
Suzanne Santamaria, DVM, MSVeterinary Terminologist (and Ontologist)
Vet Med Informatics Lab, Virginia Tech
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August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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Thoughts On Attending the ICBO
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
Gained knowledge Made connections Future work/collaboration
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ICBO 2012
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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Knowledge Organisms almost ubiquitous Ontologies in action Ontology development
and maintenance General advice
portwallpaper.com
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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Generate hypothesis Large scale research Predictive pharmacology Access resources Decision support with EHR
Ontologies in action
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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Clinical Key Access resources
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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Smart Searching System Access resources
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
Find ItvideoSmart Slide
video
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Disease-Symptom Ontology
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
Decision support with EHR
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Ontology Development and Maintenance
Check class names Agile ontology engineering Visualization
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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BioMixer
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
Visualization
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General
Look outward not inward Certificate of ontology in works Standards into ontologies Panel on finding users of ontologies All ontologies a work in progress!
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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Connections
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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Future work ACO requests, annexes?
Herd, fledgling, yearling birds Non human primate, non
human organism Adult squirrel, adult mouse
ACO on Bioportal? “Lives in” relation Vet involvement What we do is paper-worthy
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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Summary
1. Good experience2. ICBO and OBO are
relevant, important, and evolving Seem open to animal work Animal work already important!
3. Continue to contribute and participate
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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ICBO 2013 - Montreal
Photo Credit:The Montréal Buzz
Photo Credit:Intelligent Travel,National Geographic
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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ReferencesICBO 2012
http://kr-med.org/icbofois2012/icbo.htm Links to papers on left hand side
NCBO Bioportal Multi-ontology browser and visualization, etc. http://bioportal.bioontology.org/
ClinicalKey ClinicalKey: Terminology driven Semantic Search. Sivaram Arabandi
and Helen Moran http://www.clinicalkey.com/
Smart Searching System Smart Searching System for Biomedical Information. Hong-Woo Chun,
et al. http://59.27.71.173/ (intro in Korean; search in English and Korean)
Disease-Symptom Ontology Interpreting Patient Data using Medical Background Knowledge.
Heiner Oberkampf, et al.
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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References BioMixer: Visualizing Mappings of Biomedical
Ontologies. Elena Voyloshnikova, et al.
Requirements and Strategy for the Development of a Pediatric Drug Ontology. Rachel Richesson, et al.
OWL Representation of Drug Activities on Biological Systems. Samuel Croset.
Developing the Animals in Context Ontology. Suzanne Santamaria, et al.
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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References The SWO Project: A Case Study of Applying
Agile Ontology Engineering Methods in Community Driven Ontologies. Maria Copeland, et al.
Checking Class Labels against Naming Conventions: First experience with the OntoCheck Protégé Plugin. Daniel Schober, et al.
Teaching Good Biomedical Ontology Design. Martin Boeker, et al.
August 28, 2012
Vet Med Informatics Lab, Virginia Tech
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Acknowledgement
Thank you to AVI for the travel support to attend the conference
August 28, 2012
Vet Med Informatics Lab, Virginia Tech