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The use of Eclipse as a basis for a simulation platform for ecological models
Marcel Austenfeld
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Background
● Many questions in ecology are not easy to analyze (e.g. processes of patterns: long-term changes of temperature, effects of different disturbance regimes etc.).
● Long-term prognoses are difficult.
● Models are a possibility to simulate uncertain quantities
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Mission: Development of a model for the analysisof vegetation dynamics in dry acidic grasslands
Location characteristics:
● Extreme conditions (water limited, nutrient limited)
● High disturbance frequency
● Harbors rare species.
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Corynephorus canescens(grey-hair grass)
Polytrichum piliferum(Awned Hair Cap)
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Edited aerialphotograph
10 m
C. canescensP. piliferum
Free areas of sand
Model evaluated with literature data and pattern analysis!
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C. canescensP. piliferum
Free areas of sand
Model evaluated with literature data and pattern analysis!
Edited aerialphotograph
10 m
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Motivation for Bio7
● Easy to use simulation environment for scientists.
● Interface for statistical and scientific image analysis.
● Reproducible research! (verifiable algorithms, documentation).
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● SWT_AWT (integration of ImageJ, JOGL)
● Layout (thematic perspectives, views)
● SWT (native look and feel), JDT, GEF
● File organization, editor templates, Update Manager
● Powerful GUI Builder
Reasons for Eclipse RCP
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Image Analysis
ImageJ And R
Statistical Analysis
Programming Editors
3D Globe
Sensitivity Analysis
2D Visualizations3D Visualizations
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● ImageJ plugins and macros
● R packages (> 6000!)
● Eclipse plugins
● Java libraries, Python packages
Bio7 Spiced with Plugins And Packages
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Source: 2014 Data Science Salary Survey. Tools, Trends, What Pays (and What Doesn't) for Data Professionals. Publisher: O'ReillyReleased: November 2014 (accessed on 27.02.2015)
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Live Demonstration
https://youtu.be/pyYn690KaNE
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Thanks!Questions?
Contact
http://bio7.org
Website