the iplant collaborative using iplant for sharing, managing, and analyzing ecological data ramona...
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![Page 1: The iPlant Collaborative Using iPlant for sharing, managing, and analyzing ecological data Ramona Walls Presented at ESA 2014 – Ignite session August 12,](https://reader035.vdocuments.us/reader035/viewer/2022062721/56649f225503460f94c3a039/html5/thumbnails/1.jpg)
The iPlant Collaborative Using iPlant for sharing, managing, and
analyzing ecological data
Ramona WallsPresented at ESA 2014 – Ignite
sessionAugust 12, 2014Sacramento, CA
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iPlant: It’s not just
for plants!
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What is Cyberinfrastructure?
Cyberinfrastructure (CI) is…• data storage• software• high-performance computing• people
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What is Cyberinfrastructure?
Cyberinfrastructure (CI) is…• data storage• software• high-performance computing• peopleused to solve problems of size and scope that would not otherwise be solvable.
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The iPlant CollaborativeVision
Enable life science researchers and educators to use and extend cyberinfrastructure to understand and ultimately predict the complexity of biological systems.
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iPlant is a collaborative virtual organization
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Who does iPlant collaborate with?
…and more
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iPlant tools and services supportthe Life Cycle of Data
Store
Markup Search
Transfer
AnalyzeVisualize
CollaborateShare
Data Results A Results B Algo1 Algo2
Pre- Publication
Post- Publication
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iPlant Tools and Services- a whirlwind tour
image credit: http://mdtartist83.deviantart.com/art/Whirlwind-437859773
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iPlant Tools and Services Data Store: storage, sharing,
publishing
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iPlant Tools and Services Data Store: storage, sharing,
publishing
• Fast data transfers• Multiple access modes• Fine-grained permissions
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iPlant Tools and Services Atmosphere: free and easy cloud
computing
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iPlant Tools and Services Discovery Environment: web interface for
HPC
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iPlant Tools and Services Discovery Environment: high
performance computing – no command line needed!• Manage data
• upload/download• add metadata, comments, tags• share data with other users or the
public• Run analyses and workflows• choose from hundreds of apps or
create your own
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iPlant Tools and Services Agave API: science-as-a-service
platform
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iPlant Tools and Services Bisque: image management and
analysis
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iPlant Tools and Services Taxonomic Name Resolution Service for
plants
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How to interact with iPlant • Powered by iPlant• Extended Collaborative Support
http://www.iplantcollaborative.org/about-iplant/science/science-support
Or just do your own thing with our infrastructure!
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Want more information?• http://
www.iplantcollaborative.org
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Talk #48225:• “iPlant Cyberinfrastructure enables
large-scale and big-data ecological research”
• COS: Ecoinformatics• Friday, August 15, 2014 • 8:00 AM - 11:30 AM • Regency Ballroom A