the implementation of the three rs in the interest of good and ... - … · organo-typic culture...
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Thomas Hartung
Doerenkamp-Zbinden Professor and Chair for Evidence-based Toxicology,
Director, Center for Alternatives to Animal Testing (CAAT)
Johns Hopkins University, Baltimore, US
Professor of pharmacology and toxicology, University of Konstanz, Germany
The implementation of the
Three Rs in the interest of
good and humane science
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• Better science
• Less animals
• Human relevance
• Faster and cheaper results
• Refinement
• Information, Grants
• Think tank
• New tools, quality control
• EU branch, policy program
• Stakeholder consensus
Scientific American 2005
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The Bernice Barbour
Foundation
Funding from industry, philanthropy and research funding agencies
…and individuals
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• CAAT-Europe
• Four visiting scientists from Brazil (more
to come); collaboration with opinion
leaders; head validation management
group HET-CAM for BraCVAM
• Pan-American conference Apr 2016
• World Conference Seattle 2017; satellite
conferences?
• Collaborations Brazil, India, Korea, China,
Japan, Australia…
THE GLOBAL DIMENSION
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32 articles / reports published
2 commissioned articles in
preparation
5 workshop reports pending
In vitro publication standards
5+ workshops planned
Ambassadors
Thomas Hartung
Marcel Leist
Bas Blaauboer
Alan Goldberg
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Example
Two workshops 2011
Baltimore & Budapest
Covered in Nature 30 Jun 2011
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Two sides of one coin…
Animal
Welfare
3Rs
Improved
Safety
Sciences
Shortcomings of animal tests
(1) Disparity of testing requirements and risk
acceptance for different products and geographical
areas,
(2) Throughput and costs of testing versus testing
needs,
(3) Limited predictivity for humans,
(4) Precautionary approaches from drug development
adapted to other areas,
(5) Animal use,
(6) New products not suitable for traditional tests,
(7) New hazards not covered,
(8) Mixtures of toxicants not addressed,
(9)I Idividual susceptibilities and vulnerable
subpopulations not covered
(10) poor basic research and publication standards
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Genotoxic: sugarGenotoxic: salt
Protected against
TCDD in eggs
Same calculation
for alcohol:
One glass per
345 years
Protected
against minute
amounts of
pesticides
23 of 31
tested coffee
ingredients
carcinogenic
Natural
pesticides
10,000x more,
35 of 63
carcinogenic
Enjoy!!!
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R22 harmful if swallowed
(LD50 = 150-200mg/kg in rats)
R 36 irritant to eyes
R 37 respiratory irritant
R 38 irritant to skin
Not carcinogenic,
but co-carcinogen (promotor)
Unclear mutagenicity
Embryonic malformations in
cat, dog, rat, mice, rabbit,
monkey
Unlikely to be brought to the
market today
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There is some
good reason
for regulating new
products….
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43 – 60% interspecies correlation3% well tested chemicals8% somewhat tested chemicals
100,000+ chemicals in consumer products12
All models are wrong, some are useful (G. Box)
60%
naive not less naive
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QA of cell system is of critical importance
Good Cell Culture Practice (Coecke et al. 2005)
MCF-7 Karyotyping
Human Toxome
Extent of deviations from normal genome
Classification Kilobases Percentage of genome
Losses 4587603 51.2%
Deletions 667374 7.5%
Amplifications 26904 0.3%
Gains 2587093 28.9%
Normal 871166 9.7%
Centromeres 217339 2.4%
Total Abberations 7868974 87.8%
All Entries 8957479
SurePrint G3 ISCA CGH+SNP Microarray Kit, 4x180K
115234 CGH features.2440 CGH replicate probes, 59647 SNP features
reference mapping: caucasian female human reference DNA
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http://en.wikipedia.org/wiki/Organ-on-a-chip Stem cells &
Organo-typic
culture & High-
content
21st century
toxicology starts
with 21st century
cell culture
How to improve the predictive value of cell cultures
Good Cell Culture Practice
Functional
endpoints /
biomarker
= mechanism
High-content
= wholesome
characterization
High-throughput
= replicates & many
comparisons
Organo-typic
culture
Human (stem) cells
Integrated
Testing
Strategies
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Human “mini-brain”
• All cell types but micro-glia
• 350um diameter
• 800 per batch
• Reproducible
• Electrophysiological active
• From patient cells:
gene/environment
interactions
developing from iPSC
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Opportunities for human mini-
brain research
•Map the neurotoxic chemical universe
•Characterization of medical
countermeasures
•Neurotoxic and DNToxic side effects
•Brain trauma, infectious disease and
neurodegenerative disease research
•Individual susceptibility using patient
iPSC – genetic risk factors
•Long-term culture and co-culture with
other organs
Data processing Data acquisition
Generic workflow
Toxicant exposure
-omics
Bio-informatics:
information extraction POT identification and
validation
Rober Bachinsky
Marize
Valadares
Rita Sa
• Biologicals (biopharmaceutical products)
• Cell therapies
• Genetically modified and functional
food (nutraceuticals)
• Medical countermeasures to biological
and chemical terrorism and warfare
agents
• Medical devices
• Nanoparticles
Challenging new products
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• Atherosclerosis
• Male infertility and other possible
manifestations of endocrine disruption
• Autism and other developmental
behavioral disorders
• Immunotoxicity
• Childhood asthma and other
obstructive lung diseases,
• Obesity
• Diabetes
• Many diseases with an environmental
component (Parkinson, cancer…)
New hazards
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‘Omics’ Image analysis
High content High through-put
Information rich
Bioinformatics &
Data-mining
Knowledge on
pathways
Systems Toxicology
Robotised / automated
testing
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Why metabolomics & miRNomics?
DNA
RNA
Proteins
Genotype
Metabolites
Genomics(25,000 genes)
Transcriptomics(100,000 mRNAs)
Proteomics(1,000,000 proteins)
Metabolomics(5,000-7,000 metabolites)
Phenotype
Mammalian Species
miRNAsmiRNomics
(2,042 miRNAs)
ALTEX 2013
30, 209-225
METABOLOMICS
3 WORKSHOPS
2 INFODAYS
Mapping the Human Toxome by Systems Toxicology
Hewitt et al., 2005. Science, 307:1572-1573
Endocrine disruption• Use “omics” to map PoT for endocrine disruption
• Develop software tools
• Identify PoT
• Develop a process for PoT annotation, validation
• Establish public database on PoT.
www.humantoxome.com26
Need for evidence integration:• Test covers not all possible outcomes
of interest, classes of substances
(applicability domain), or severity
classes
• Positive test result rare (excessive
false-positives)
• Gold standard test is too costly/ too
many animals (need for prioritization)
• Human predictivity of a single test is
not satisfactory
• Existing data or Kinetic information
(QIVIVE) to be integrated.27
Many PoT = many tests
Need for data integration
Use of multiple information,
not stand-alone replacement
OECD: Integrated Approaches to
Testing and Assessment (IATA)
= ITS + kinetics + exposure + RA
Integrated Testing Strategies
Toxicology will make more use of
Integrated Testing Strategies
• ITS development sensitization &
eye irritation
• Commissioned whitepaper
Jaworska & Hoffmann
• WORKSHOP 2013
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30
Vanessa Sa Rocha, Natura
$3 trillion $3 trillion
$3 trillion$200 billion
Animal testing
at $3 billion per year
Safety Testing only at the end of a costly
development process
Frontloading of toxicology / Green Toxicology
“fail early, fail cheap”
Anticipate human or
regulatory problems?
“test early, develop clean”
Green Toxicology
InfoDays
Green Toxicology
• Connecticut, Dec
2012
• Baltimore, Nov 2013
• Zurich, Switzerland
Oct 2014
• Frankfurt, Germany,
Mar 2015
• SoT 2015, San Diego
Regulation has to minimize mistakes
Difficulty to change traditional
approaches
Precaution and no compromises, thus
formal validation
Frontloading of toxicity allows
uncertainty
GreenTox reduces validation &
acceptance needs
Which R of the 3?
Read-across
Replace
Refine
The 4th R?
Reduce**pesticides
ALTEX 2014, 31:387-396
CAAT Read-across Initiative
International Steering Group & Whitepaper
Five working groups
“Good Read-across Practice”
Stakeholder Fora Brussels & Washington early 2016
Read-across-21c • Negative vs.
positive read-
across
• Support by
biological data not
only structure
• Expression of
uncertainty
• Local validity
• Application to
complex mixtures
“Test-across”, 2007
“Evidence-Based”
Evidence-based:
-- Tools
-- Approaches
E-B guiding principles:
-- Transparency ( understanding & reproducibility)
-- Objectivity ( limit bias)
-- Consistency ( structured approaches)39
Evidence
Studies
GuidelinesOr “shaming”
Enhancement:
-- Design
-- Conduct
--Reporting
Egs. of outcomes:
-- Data quality
-- Lit. review
RetrospectiveAssessment
2006-7: Publication / 1st conference
Mar 2011: US EBTC
Oct 2011: Secretariat at CAAT
www.ebtox.com
Jan 2012: First conference hosted by EPA
Jun 2012: EU EBTC
Diverse working groups
Jul 2013: IUTOX, Seoul, Korea
Sep 2013: EuroTox, Interlaken, Switzerland
Systematic reviews increasingly embraced
by EPA/IRIS, NTP and EFSA
Nov 2014: Forum Systematic Reviews
Feb 2015: FDA Training
Systematic review & related approaches:Gaining acceptance in toxicology
Application: Chemical Assessments
Feb. ‘15 Workshop
Global perspective
• Global economy
needs global
regulatory
standards
• Opportunities for
export and contract
testing
• No transition until
last important
market changes
• Investment into 21st
century technologies
for new economies
The difficulty lies, not in the new ideas,
but in escaping from the old ones.
John Maynard Keynes
(1883 - 1946)
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