supplementary methods - images.nature.com · supplementary methods ... all the raw data files...
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Supplementary Methods
Reprocessing of raw data
All the raw data files analyzed in this report have been originally generated by Steven Gygi’s
lab1. Experimental details and instruction about how to download the raw files from Tranche
(https://proteomecommons.org/) can be found in the extended version of the article that
includes supplemental information and can be downloaded with the following URL:
http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0092867410013796/1-
s2.0-S0092867410013796-
mmc5.pdf/272196/html/S0092867410013796/818d8142e6d9ca30c93e71532ad0ffdf/mmc5.pd
f
Raw data were processed with the MaxQuant proteomics software package (version 1.2.2.5)2,
integrated with the search engine Andromeda3. This suite of programs can be downloaded as
freeware at http://maxquant.org. The database search was performed against the mouse
International Protein Index (IPI) database (version 3.68) with the initial maximum allowed mass
deviation set to 7 ppm for peptide masses and 0.5 Da for CID fragment ions. Enzyme specificity
was set to trypsin, allowing for cleavage N-terminal to proline residues and up to four missed
cleavages. Cysteine carbamidomethylation was set as a fixed modification. The following
variable modifications were used: methionine oxidation; protein N-acetylation;
phosphorylation on serine, threonine and tyrosine residues; ADP-ribosylation (mass shift of
541.0611; composition C15 H21 N5O13P2) and phosphate-ribosylation (mass shift of 212.0086;
composition C5 H9 N5O7P) on glutamate, aspartate and arginine. In case of ADP-ribosylation,
MaxQuant automatically searched for the following diagnostic peaks4,5 in the fragmentation
spectra: adenine (mass 135.0545; composition C5H5N5), adenosine –H2O (mass 249.0862;
composition C10H11N5O3), adenosine monophosphate (AMP; mass 347.0631; composition
C10H14N5O7P), adenosine diphosphate (ADP; composition C10H15N5O7P2). Because diagnostic
ions of ribose-phosphate cannot be detected in the positive mode they have not been added to
MaxQuant.
Nature Methods: doi:10.1038/nmeth.2106
Manual evaluation and assignment of MS/MS spectra
The MS/MS spectra were manually validated and filtered by the following stringent criteria: (i)
only peptides containing an internal modified arginine and fragment ions from ADP-ribose were
accepted; (ii) after MaxQuant recalibration maximum mass deviation smaller than 3 ppm; (iii)
extensive coverage of peptide backbone fragment ions; (iv) preferential cleavage N-terminal to
proline and C-terminal to aspartate and glutamate.
In addition to the diagnostic ions that are automatically annotated by MaxQuant as described
above, we manually assigned other fragment ions generated from the fragmentation of ADP-
ribose. In accordance to previous reports4,5 the following losses from the precursor ion and, less
commonly, from b and/or y ions, appear to be the most pronounced: adenine; adenine –H2O;
adenine –2H2O; adenosine –H2O; adenosine –2H2O; AMP; AMP –H2O; AMP –2H2O. These
characteristic ions pinpoint ADP-ribosylation with very high confidence. Their relative
intensities vary profoundly depending on the nature of the substrate peptide. For some spectra
this fragmentation behavior allows the presence of multiple high quality fragment ions derived
from the peptide backbone and does not reduce the confidence of peptide assignment while
for others a more pronounced fragmentation of the ADP-ribose branch makes the sequence
assignment more challenging6. The N-glycosidic bond between arginine and ADP-ribose is
remarkably stable during CID as only very few fragments derived from the loss of the whole
ADP-ribose have been observed here. On the contrary, as described previously7, the ester bond
joining the ADP-ribose to the side chain of glutamate appears to be much more labile: the most
intense fragment ion of the only ADP-ribosyl glutamate containing peptide that was identified
here is the loss of ADP-ribose from the precursor ion. This perhaps explains at least in part the
apparent underrepresentation of glutamate ADP-ribosylation in these experimental
conditions1.
Nature Methods: doi:10.1038/nmeth.2106
Supplementary References
1 Huttlin, E. L. et al. A tissue-specific atlas of mouse protein phosphorylation and
expression. Cell 143, 1174-1189, doi:10.1016/j.cell.2010.12.001 (2010).
2 Cox, J. & Mann, M. MaxQuant enables high peptide identification rates, individualized
p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol
26, 1367-1372, doi:nbt.1511 [pii]10.1038/nbt.1511 (2008).
3 Cox, J. et al. Andromeda: a peptide search engine integrated into the MaxQuant
environment. J Proteome Res 10, 1794-1805, doi:10.1021/pr101065j (2011).
4 Laing, S., Koch-Nolte, F., Haag, F. & Buck, F. Strategies for the identification of arginine
ADP-ribosylation sites. J Proteomics 75, 169-176, doi:10.1016/j.jprot.2011.07.003
(2011).
5 Hengel, S. M. & Goodlett, D. R. A review of tandem mass spectrometry characterization
of adenosine diphosphate-ribosylated peptides. International Journal of Mass
Spectrometry 312, 114-121, doi:10.1016/j.ijms.2011.06.003 (2012).
6 Hengel, S. M., Icenogle, L., Collins, C. & Goodlett, D. R. Sequence assignment of ADP-
ribosylated peptides is facilitated as peptide length increases. Rapid Commun Mass
Spectrom 24, 2312-2316, doi:10.1002/rcm.4600 (2010).
7 Tao, Z., Gao, P. & Liu, H. W. Identification of the ADP-ribosylation sites in the PARP-1
automodification domain: analysis and implications. J Am Chem Soc 131, 14258-14260,
doi:10.1021/ja906135d (2009).
Nature Methods: doi:10.1038/nmeth.2106
Supplementary data
Representative fragmentation spectra of all modified peptides reported in the Supplementary Table are shown. These spectra were produced with the Viewer tool of the MaxQuant suite of algorithms and manually validated.
adpr = mono ADP-ribosylation
ri = ribose phosphate
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f2_02_w01363
5942
Acat3; Acat3; Q80X81; Q8R4V3
117.7
ITMS; CID; 1
ac
_ M N T
y₁₁
adpr
R
y₁₀
b₅
S
y₉
b₆
D P
y₇
b₈
V
y₆
b₉²⁺
V
y₅
b₁₀*
I
y₄
b₁₁*
V
y₃
S A A R _
y₃317.2
AMP348.1 y₄
404.2
428.0
y₉²⁺456.3
y₅503.3
y₆616.4
b₆²⁺644.7
y₇715.4
b₉²⁺792.3
b₁₀²⁺848.8
b₁₁²⁺898.4
y₉911.6 y₁₀
1026.6
y₁₁1113.6
b₅-H₂O1155.3
b₅1173.3
b₆-H₂O1270.4
b₆-NH₃1271.3
b₆1288.4
1349.6
1448.6
b₈1484.5
b₆²⁺-H₂O635.6
b₁₀-AMPb₁₁-AMP
400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
Intensity
400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
ADP
1032.6
MH₂²⁺-adenine
1023.6
MH₂²⁺-adenine-H₂O
1014.5MH₂²⁺-adenine-2H₂O
975.6MH₂²⁺-adenosine-H₂O
926.6
MH₂²⁺-AMP
MH₂²⁺-adenosine-2H₂O966.8
MH₂²⁺-AMP-H₂O917.6
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f2_01_w01047
4613
Adss; Adss2; mCG_14946; P46664; B9EIE9; Q8C909
61.82
ITMS; CID; 1
ac
_ S
y₁₉²⁺
I
y₁₈²⁺
b₃
S
y₁₇²⁺
b₄-H₂O
E
y₁₆²⁺
b₅
S
y₁₅²⁺
b₆-H₂O
S
y₁₄²⁺
P
y₁₃²⁺
A
y₁₂²⁺
A T S
y₉²⁺
L P
y₇
N
b₁₅
G D C G
y₂
adpr
R P R _
y₂272.2
b₃330.2
b₄-H₂O441.2
b₅-H₂O528.2
b₅546.2
b₆-H₂O615.3
y₉²⁺785.3
y₁₂²⁺935.9
y₁₃²⁺971.4
y₁₄²⁺1046.6
y₁₅²⁺1055.4
y₁₆²⁺1098.9
y₁₇²⁺1142.4
y₁₈²⁺1207.0
y₁₉²⁺1250.5 y₇
1358.4
b₁₅1441.7
1006.9
y₁₅²⁺-H₂O
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (zoom)
1304.1MH₂²⁺-adenine
1295.1MH₂²⁺-adenine-H₂O
1286.1MH₂²⁺-adenine-2H₂O
1198.0MH₂²⁺-AMP
1189.2MH₂²⁺-AMP-H₂O
903.0MH₃3⁺-2H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_02_w01367
4532
Ahsg; Fetua; mCG_128255; P29699; O35399; Q3TIU3; Q3UEK5; Q3UEK9
74.95
ITMS; CID; 1
_ V G
y₁₆²⁺
Q P
y₁₄²⁺
G
y₁₃²⁺
b₆
A
y₁₂²⁺
b₇
A
b₈
G P
b₁₀
V
y₈²⁺
S P M
y₅
C P G
adpr
R I R _
adenosine - H2O250.1
AMP348.1
ADP428.0
b₆
510.3b₇
581.3
b₈638.3
y₈²⁺764.3
b₁₀834.4
y₁₂²⁺934.4
y₁₃²⁺969.9
y₁₄²⁺1005.4
y₁₆²⁺1082.4
y₅1139.4
1157.0
1147.8
1100.4
1100.4
721.9
y₁₆3⁺
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0500
10001500
20002500
30003500
4000
Intensity
300 400 500 600 700 800 900 1000 1100 1200
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f5_01_w01050
6428
Ahsg; Fetua; mCG_128255; P29699; O35399; Q3TIU3; Q3UEK5; Q3UEK9
92.77
ITMS; CID; 1
_ P
b₂
P A S
b₅
V
b₆
V
y₁₃²⁺
V
y₁₂²⁺
b₈
G
y₁₁²⁺
b₉²⁺
P
y₁₀²⁺
b₁₀
V
y₉²⁺
b₁₁
V
y₈²⁺
V P
adpr
R G L S
y₂
D H R _
b₂195.1
adenosine - H2O250.1
y₂312.2
AMP348.1
b₈²⁺354.2
b₉²⁺402.7
ADP428.0
b₅452.3
b₁₁²⁺501.8
b₆-H₂O533.3
b₆551.3
b₈707.4
y₈²⁺739.8
y₉²⁺789.3
y₁₀²⁺838.8
y₁₁²⁺888.4
b₁₀903.5
y₁₂²⁺936.9
y₁₃²⁺965.4
b₁₁1002.6
625.1
y₁₂3⁺
200 300 400 500 600 700 800 900 1000 1100
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
01000
20003000
40005000
6000
Intensity
200 300 400 500 600 700 800 900 1000 1100
m/z (zoom)
815.4MH3
3⁺-adenine
809.7
MH33⁺-adenine-H₂O
745.0MH3
3⁺-AMP
740.5
MH33⁺-AMP-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
o05362
4002
Ahsg; Fetua; mCG_128255; P29699; O35399; Q3TIU3; Q3UEK5; Q3UEK9
71.15
ITMS; CID; 1
_ T
a₂
Y H D
b₅-H₂O
L
y₂₁²⁺
adpr
R H A F
y₁₇²⁺
b₁₀²⁺
S
y₁₆²⁺
P
y₁₅²⁺
b₁₂²⁺
V
y₁₄²⁺
b₁₃²⁺
A
b₁₄²⁺
S
y₁₂
V
y₁₁²⁺
E
y₁₀²⁺
S
y₉²⁺
A
y₈²⁺
S G
y₆²⁺
E T L
y₃
H S P K _
a₂237.1
adenosine - H2O250.1
y₃331.2
y₆²⁺341.7
AMP348.1
ADP428.0
y₈²⁺434.7
y₉²⁺478.3
y₁₀²⁺513.8
y₁₁²⁺557.3
b₅-H₂O612.3
y₁₂²⁺621.8
y₁₄²⁺714.8
y₁₅²⁺750.4
y₁₆²⁺799.9
y₁₇²⁺848.4
b₁₀²⁺885.3
b₁₂²⁺983.4 b₁₃²⁺
1018.9
b₁₄²⁺1062.4
y₂₁²⁺1069.5
y₁₂-NH₃1225.6
y₁₂1242.6
833.4
828.8
824.3
804.7
780.1
1053.4
b₁₄²⁺-H₂O566.1
y₁₇3⁺
595.2y₁₈3⁺
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
01000
20003000
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300
m/z (zoom)
MH₄4⁺-adenine
MH₄4⁺-adenine-H₂O
MH₄4⁺-adenine-2H₂O
MH₄4⁺-adenosine-H₂O
MH₄4⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f9_02_w01370
10560
Akr1a1; Akr1a4; RP23-177C18.1-001; Q9JII6; Q3UJW9; Q540D7; Q80XJ7
119.4
ITMS; CID; 1
_ A
b₂
W
y₁₉²⁺
adpr
R H P
b₆²⁺
D E P
b₉²⁺
V
b₁₀²⁺
L
y₁₁
b₁₁²⁺
L
y₁₀²⁺
b₁₂²⁺
E
y₉
b₁₃²⁺
E P
y₇
b₁₅²⁺
V
y₆
b₁₆²⁺
V
y₅
L
y₄
b₁₈²⁺
A
y₃
L
y₂
A E K _
b₂258.1
y₂276.1
y₃347.2
AMP348.1
y₄460.3
y₉²⁺470.3
y₅531.3
y₁₀²⁺534.8
y₆644.4
b₆²⁺652.7
y₇743.5
b₉²⁺815.3
b₁₀²⁺871.8
b₁₁²⁺928.4
y₉939.6
b₁₂²⁺992.9
y₁₉²⁺1049.6
b₁₃²⁺1057.4
b₁₅²⁺1155.5
y₁₁1197.7
b₁₆²⁺1205.0
b₆-H₂O1286.4
b₁₈²⁺1297.1
b₁₃3+
705.3
662.2b₁₂3+
b₁₁3+
619.4
803.7
b₁₆3+
969.7b₂₁3+903.0
b₁₉3+
926.9b₂₀3+
864.9b₁₈3+
841.5b₁₇3+
400 600 800 1000 1200 1400 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
300
Intensity
400 600 800 1000 1200 1400 1600
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_02_w01367
7239
Alb; Alb1; Alb-1; alb; mCG_1705; P07724; Q546G4
67.4
ITMS; CID; 1
_ L
y₁₈²⁺
b₂
C
b₃
A
y₁₆²⁺
b₄
I P
y₁₄*
b₆
N L
adpr
R
b₉²⁺
E N
y₉
b₁₁*
Y G
y₇
b₁₃²⁺
E
y₆
b₁₄*
I
y₅
A
y₄
b₁₆²⁺
D C C T K _
b₂274.1
b₃345.2
AMP348.1
ADP428.0
b₄458.2
y₄568.2
b₆669.3
y₅683.2
y₆754.3
b₉²⁺804.8
y₇867.4
b₁₃²⁺1036.4
y₉1053.4
b₁₆²⁺1186.0
y₁₆²⁺1241.0
y₁₈²⁺1333.0
b₁₁-AMP1538.7
b₁₄-AMP1837.8
y₁₄-AMP1922.8
1402.2
1393.1
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O
MH₂²⁺-adenine-H₂O-NH₃1384.6
1345.2
1296.2
MH₂²⁺-AMP
1232.1
y₁₆²⁺-H₂O
1178.2
b₁₆²⁺-H₂O
1173.5
y₁₆²⁺-adenine
1067.2
y₁₆²⁺-AMP
1116.0
y₁₆²⁺-adenosine-H₂O
400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0500
10001500
2000
Intensity
400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f2_02_w01363
7393
Apeh; Apeh; Q8R146-1; Q8R146; Q8R146-2; Q8R146
88.77
ITMS; CID; 1
ac
_ M E
adpr
R
y₁₄²⁺
Q
y₁₃
V
y₁₂
b₆
L
y₁₁
b₇²⁺
L
y₁₀²⁺
b₈-NH₃
S
y₉
b₉
E
b₁₀²⁺
P Q E A
y₄
A
y₃
b₁₅²⁺
A
b₁₆²⁺
L Y R _
AMP348.1
y₃
451.3 y₉²⁺509.8
y₄
522.3
y₁₀²⁺574.3
b₆²⁺670.7
y₁₂²⁺674.3
b₇²⁺727.3
y₁₄²⁺780.4
b₉²⁺835.3
b₁₀²⁺883.8
b₆-AMP993.4
y₉1018.5
b₁₅²⁺1118.9
b₁₆²⁺1175.5
y₁₁1234.6
b₆1340.5
y₁₂1347.7
y₁₃1460.7
b₈-NH₃1523.6
b₉1669.6
1276.3MH₂²⁺-adenine
1267.2
MH₂²⁺-adenine-H₂O
1170.5
MH₂²⁺-AMP-H₂O
MH₂²⁺-AMP
1161.4
826.3b₉²⁺-H₂O
400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
010
2030
4050
6070
Intensity
400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
8379
Arg1; Q61176; Q8K3K5
114.83
ITMS; CID; 1
_
y₁₂²⁺
V
y₁₁*
a₂
M
y₁₀²⁺
b₃
E
y₉²⁺
b₄
E
y₈²⁺
T
y₇²⁺
b₆
F
y₆²⁺
S Y
b₉
L
y₃-NH₃
L G
adpr
R K _
a₂203.1
AMP348.1
b₃360.2
ADP428.0
b₄489.2
b₉²⁺550.7
y₆²⁺645.8
y₇²⁺689.3
b₆737.3
y₈²⁺762.8
y₉²⁺813.3
y₁₀²⁺877.9
y₃-NH₃884.3
y₁₁²⁺942.4
y₁₂²⁺1007.9
b₉-H₂O1082.5
b₉1100.5 y₁₁-AMP
1536.7
y₁₁²⁺-H2O933.2
990.1
981.4
200 400 600 800 1000 1200 1400 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
00.5
11.5
22.5
Intensity [10e4]
200 400 600 800 1000 1200 1400 1600
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_02_w01367
8940
Arhg; Rhog; Sid10750; mCG_23419; P84096; B2KKU6; Q3UDZ1
83.11
ITMS; CID; 1
_ T
y₁₇²⁺
V
b₃
N
y₁₅²⁺
b₄
L
y₁₄²⁺
N
y₁₃²⁺
b₆
L
y₁₂
b₇
W D
y₁₀²⁺
T
y₉²⁺
A G Q E
b₁₄-NH₃
E
b₁₅-NH₃
Y
y₃
b₁₆²⁺
D
adpr
R L R _
b₃315.2
AMP348.1
b₄428.3
b₆-H₂O637.4
y₃-AMP638.3
b₆655.4
b₇841.5
y₉²⁺853.8
y₁₀²⁺889.3
b₁₆²⁺925.4
y₁₂²⁺997.4
y₁₃²⁺1090.4
y₁₄²⁺1146.9
y₁₅²⁺1204.0
y₁₇²⁺1317.5
b₁₄-NH₃1554.7
b₁₅-NH₃1717.8
y₁₂1993.7
1350.0
1341.3
1292.7
MH₂²⁺-adenosine-H₂O
1244.2MH₂²⁺-AMP
1235.2
MH₂²⁺-AMP-H₂O
1135.5y₁₄²⁺-H₂O
1081.3
y₁₃²⁺-H₂O
878.8y₁₇3⁺
873.2y₁₇3⁺-NH₃
400 600 800 1000 1200 1400 1600 1800 2000
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
Intensity
400 600 800 1000 1200 1400 1600 1800 2000
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f5_01_w01050
5746
Car; Cxadr; Car; Cxadr; P97792-1; P97792; Q3TV22; P97792-2; P97792
60.62
ITMS; CID; 1
_ T Q
y₂₁²⁺
Y N
y₁₉²⁺
b₅
Q
y₁₈²⁺
b₆
V P S E
y₁₄²⁺
D F
y₁₂²⁺
E
adpr
R
y₁₀
A P
y₈
Q S
y₆
b₁₈²⁺
P
y₅
T
b₂₀²⁺
L A P A K _
AMP348.1
y₅499.3
y₁₀²⁺505.3
y₆600.4
b₅635.3
b₆-H₂O716.4
b₆-NH₃717.3
b₆734.3 y₈
784.5
y₁₂²⁺889.4
y₁₀1009.6
y₁₄²⁺1027.4
y₁₈²⁺1241.5
y₁₉²⁺1291.1
b₁₈²⁺1308.5
y₂₁²⁺1412.1
b₂₀²⁺1415.6
1541.0
1531.8
1523.0
1483.6
1474.9
1434.8
MH₂²⁺-AMP-H₂O
MH₂²⁺-AMP
1425.7
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
600
Intensity
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-2H₂O
MH₂²⁺-adenine-2H₂O
MH₂²⁺-adenosine-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f5_01_w01050
5773
Car; Cxadr; Car; Cxadr; P97792-1; P97792; Q3TV22; P97792-2; P97792
30.78
ITMS; CID; 1
_ T
y₂₂²⁺
Q
y₂₁²⁺
Y
b₄
N
y₁₉²⁺
b₅
Q
y₁₈²⁺
b₆
V P S
b₉-H₂O
E D
y₁₃
F
y₁₂²⁺
E
ri
R
y₁₀²⁺
A P Q S P
b₁₉²⁺
T L A P A K _
b₄-H₂O489.2
y₁₀²⁺505.3
b₄507.2
b₅-H₂O617.3
b₅635.3
b₆-NH₃717.3
y₁₂²⁺724.9
b₆734.3
b₉-H₂O1029.5
y₁₈²⁺1077.0
y₁₉²⁺1126.5
b₁₉²⁺1194.5
y₂₁²⁺1247.6
y₂₂²⁺1329.1
y₁₃1577.8
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f2_01_w01047
7927
Catnb; Ctnnb1; Ctnnb1; Q02248; Q80VE7; Q3UZT7
96.41
ITMS; CID; 1
ac
_ A
y₁₆²⁺
T
y₁₅²⁺
b₃-H₂O
Q
y₁₄²⁺
b₄
A
y₁₃²⁺
b₅
D
y₁₂²⁺
b₆
L
y₁₁²⁺
M E
y₉²⁺
b₉
L
y₈²⁺
D
y₇
b₁₁²⁺
M
b₁₂-H₂O
A M
b₁₄-NH₃
E
b₁₅²⁺
P D
b₁₇²⁺
adpr
R K _
b₃-H₂O325.2
AMP348.1
b₄-H₂O396.2
b₄414.2
ADP428.0 b₅
529.2
b₁₁²⁺631.3
b₆642.3
y₈²⁺759.8
y₉²⁺817.3
b₁₅²⁺845.4
y₁₁²⁺938.3
y₁₂²⁺1003.9
b₉1015.5
y₁₃²⁺1060.4
y₁₄²⁺1117.9
y₁₅²⁺1153.4
y₁₆²⁺1217.462
b₁₇²⁺1251.5
b₁₂-H₂O1314.6
y₇1387.5
b₁₄-NH₃1575.6
826.4y₂-H₂O
y₁₁²⁺-H₂O929.2
1256.8MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O1256.8
1151.2MH₂²⁺-AMP
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_02_w01367
8884
Ccbl2; Kat3; Ccbl2; Kat3; Q71RI9-1; Q71RI9; Q71RI9-2; Q71RI9
59.61
ITMS; CID; 1
_ W
y₁₄²⁺
b₂
T S S
y₁₁²⁺
b₅
D
y₁₀²⁺
W
y₉
T
y₈²⁺
F
y₇²⁺
b₉
D
y₆
P
adpr
R E
y₃
L E S K _
b₂288.1
AMP348.1
y₃363.2
ADP428.0
b₅-H₂O559.2
b₅577.2
y₇²⁺700.3
y₈²⁺757.8
y₁₀²⁺881.8
y₁₁²⁺974.9
y₁₄²⁺1119.4
b₉1126.4
y₆
1302.5
y₉-AMP1314.6
y₈-NH₃1497.5
1195.6
1186.4
1138.4MH₂²⁺-adenosine-H₂O
1089.6MH₂²⁺-AMP
830.71
MH₃3⁺-2H₂O
400 600 800 1000 1200 1400 1600 1800 2000
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
800
Intensity
400 600 800 1000 1200 1400 1600 1800 2000
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O1177.1
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f5_01_w01050
3664
Chchd2; mCG_130675; Scand3; Q9D1L0; B2RPU8; Q8CEW7
117.29
ITMS; CID; 1
_
adpr
R
y₂₂²⁺
b₂
A P A A
y₁₈
b₆
Q
y₁₇
b₇²⁺
P
y₁₆²⁺
b₈
P
b₉²⁺
A
y₁₄
b₁₀²⁺
A
b₁₁²⁺
A
y₁₂
b₁₂
A P S
y₉
A
y₈
b₁₆
V
y₇
b₁₇
G
y₆
b₁₈²⁺
S P A
b₂₁²⁺
A A P R _
AMP348.1
ADP428.0 y₁₂²⁺
540.8
y₆582.3
b₇²⁺617.2
b₈²⁺665.5
y₇669.4
y₁₆²⁺682.9
b₉²⁺701.3
y₈726.4
y₁₇²⁺731.4
b₁₀²⁺736.8
b₂769.2
b₁₁²⁺772.3
y₁₈²⁺779.9
b₁₂²⁺807.8
y₉825.5
y₂₂²⁺963.5
b₁₆²⁺984.9
b₁₈²⁺1056.9
y₁₂1080.6
b₆1136.4
b₂₁²⁺1176.5
y₁₄1222.654
y₁₇1461.8
y₁₈1558.8
b₁₂1614.6
b₁₆-AMP1621.8
b₁₇-AMP1678.8
1280.2
1271.2MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine
1174.0
MH₂²⁺-AMP
1479.2
b₁₂-adenine
400 600 800 1000 1200 1400 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
Intensity
400 600 800 1000 1200 1400 1600
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liverf7_02_w01368
4645
Clec4f; Clecsf13; Kclr; P70194
101.6
ITMS; CID; 1
_ S
y₁₂²⁺
N
y₁₁²⁺
b₃
V
y₁₀²⁺
b₄
Q
y₉²⁺
b₅
M
y₈²⁺
b₆
L
y₇²⁺
b₇
Q
y₆²⁺
S N L
y₃-NH₃
Q
adpr
R A K _
b₃-NH₃284.1
b₃301.2
AMP348.1
ADP428.0
b₄429.2
b₅-NH₃543.2
b₅560.2
y₆²⁺635.8
b₆673.3
y₇²⁺679.3
y₈²⁺743.3
y₉²⁺799.8
b₇801.4
y₁₀²⁺865.4
y₃-NH₃898.3
y₁₁²⁺929.4
y₁₂²⁺978.9
1012.3
MH₂²⁺-adenine
1003.1
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O
994.5MH₂²⁺-adenine-2H₂O
955.0
920.8
y₁₁²⁺-NH₃
911.8y₁₁²⁺-NH₃-H2O
906.1
MH₂²⁺-AMP
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0500
10001500
20002500
30003500
Intensity
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f8_02_w01369
2831
Cnn3; Q9DAW9; Q99JN5
70.09
ITMS; CID; 1
_ G A
y₁₁²⁺
S
y₁₀²⁺
b₄-H₂O
Q
y₉²⁺
b₅
A
y₈²⁺
G
y₇²⁺
M
y₆²⁺
b₈
L
b₉
A P G
y₂
T
adpr
R R _
b₄-H₂O326.1
AMP
348.1 b₅-H₂O397.2
b₅-NH₃398.2
b₅415.2
ADP428.0
y₆²⁺599.7
y₇²⁺656.3
b₈716.3
y₈²⁺
721.8
y₉²⁺750.3
y₁₀²⁺785.8
b₉787.4
y₁₁²⁺849.8
y₂
872.3
880.7
MH₂²⁺-adenine-H₂O842.6
595.9
y₁₂3⁺
589.8
y₁₂3⁺-H₂O
567.0
y₁₁3⁺
y₁₁3⁺-H₂O561.1
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
800
Intensity
300 350 400 450 500 550 600 650 700 750 800 850 900
m/z (zoom)
MH₂²⁺-AMP-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f4_01_w01049
6818
Cps1; Q8C196; Q561M8
96.06
ITMS; CID; 1
_ G
y₁₀
N D
y₈
b₄
V
y₇
b₅
L
y₆
b₆
V
y₅
b₇
I
adpr
E
y₃
C
y₂-NH₃
N L R _
y₂-NH₃271.2
348.1
b₄386.2
y₃402.2
428.0
b₅-H₂O481.2
b₅499.3
b₆-NH₃581.3
b₆598.3
y₆²⁺673.2
b₇-NH₃694.4
b₇711.4
y₇²⁺722.8
y₈²⁺779.3 y₅-AMP
885.3
y₁₀²⁺886.3
y₆-AMP998.4
y₇-AMP1097.5
y₈-AMP1210.6
y₁₀-AMP1424.6
701.5
MH₂²⁺-ADP ribose
798.3
MH₂²⁺-AMP
903.5
y₇-ADP ribose
1114.5
b₁₀-ADP ribose
617.0
y₅²⁺
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
1200
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400
m/z (zoom)
AMP ADP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
08146
3014
Croc1; Ube2v1; RP23-118A2.7-001; Q9CZY3-1; Q9CZY3; Q569Y6
110.57
ITMS; CID; 1
_ V N
y₂₀²⁺
M
y₁₉²⁺
S
b₅
G
y₁₇²⁺
b₆
V
y₁₆²⁺
b₇
S
y₁₅²⁺
S
y₁₄²⁺
S
y₁₃²⁺
N G
y₁₁
V
y₁₀²⁺
b₁₃
V
y₉
b₁₄
D
b₁₅²⁺
P
adpr
R
y₆-NH₃
A T A
y₃
V L A K _
y₃331.2
AMP
348.1
ADP428.0
b₅489.2
b₆-H₂O570.3
b₆-NH₃571.3
y₆-NH₃585.4
b₆588.3
b₇-H₂O657.3
b₇-NH₃658.3
b₁₄²⁺667.3
b₇675.3
b₁₅²⁺715.8
y₉²⁺734.3
y₁₀²⁺791.8
y₁₁²⁺841.3
y₁₃²⁺919.4
y₁₄²⁺976.4
y₁₅²⁺1019.9
y₁₆²⁺1063.5
y₁₇²⁺1107.0
y₉-AMP1120.6
y₁₉²⁺1185.0
b₁₃1218.6
y₂₀²⁺1228.5
b₁₄-H₂O1315.6
b₁₄1333.6
y₁₁-AMP1334.7
y₉1467.6
725.6y₉²⁺-H2O
922.3MH₃3⁺-2H₂O
863.1
y₂₁3⁺
400 600 800 1000 1200 1400 1600 1800 2000
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500
m/z (zoom)
1325.0MH₂²⁺-adenine
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f8_01_w01053
2326
Crsbp1; Lyve1; Xlkd1; Q8BHC0
84.21
ITMS; CID; 1
_
y₈²⁺
I
y₇²⁺
b₂
F
y₆²⁺
b₃
S
y₅
b₄-H₂O
N P
y₃
b₆
adpr
R C G K _
a₂233.2
b₂261.2
b₃-H₂O330.2
b₃348.2
y₃364.2
ADP428.0
b₄-H₂O444.2
y₆²⁺636.7
y₇²⁺680.2
y₈²⁺753.8
y₅-AMP811.3
b₆-AMP909.4
b₆-NH₃1239.4
742.7
733.9
MH₂²⁺-adenine
724.9
685.6
MH₂²⁺-adenosine-H₂O
y₇²⁺-adenine612.9
604.0
y₇²⁺-adenine-H₂O
1023.4
y₅-adenine
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
02000
40006000
8000
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400
m/z (zoom)
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f9_01_w01054
7029
Egfr; mCG_140518; RP23-295E4.1-001; Q01279; Q3TQS6; Q5SVE8; Q9EP98
76.15
ITMS; CID; 1
_ L L Q E
y₁₉²⁺
adpr
R
y₁₈²⁺
b₆-NH₃
E
y₁₇²⁺
b₇²⁺
L
y₁₆²⁺
V
y₁₅²⁺
b₉*
E P
y₁₃²⁺
L
y₁₂
b₁₂-H₂O
T
y₁₁
P S
y₉
G
y₈²⁺
E A P N
b₂₀²⁺
Q A H L R _
AMP348.1
y₈²⁺453.7
y₁₂²⁺638.8
y₁₃²⁺689.3 b₇²⁺
712.3
y₁₅²⁺794.4
y₁₆²⁺858.9
y₁₇²⁺908.5
y₁₈²⁺965.0
y₁₉²⁺1029.5
y₉1035.5
y₁₁1179.6
y₁₂1276.6
b₆-NH₃1293.5
b₉-AMP1304.6 b₂₀²⁺
1372.1
b₁₂-H₂O1944.8
785.6
y₁₅²⁺-H2O
849.9
y₁₆²⁺-H2O996.8MH₂3⁺-adenosine-H₂O
14021.3b₉-adenosine-H₂O
400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
300
Intensity
400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_01_w01048
8635
Ehd2; Ehd3; Q9QXY6; Q8R0V6
70.06
ITMS; CID; 1
ac
_
y₁₀²⁺
M
y₉²⁺
F
y₈
b₃
S
y₇²⁺
b₄
W
y₆²⁺
b₅
L G N
b₈²⁺
D D
adpr
R R _
AMP348.1
b₃-H₂O390.1
b₃408.1
b₈²⁺497.2
b₄-H₂O576.2
b₄594.2
y₆²⁺637.2
y₇²⁺693.7
b₅707.3
y₈²⁺786.8
y₉²⁺830.3
y₁₀²⁺903.8
y₈-AMP1225.5
922.8
MH₂²⁺-adenine
913.9
904.6
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
807.9
816.9
894.8
200 300 400 500 600 700 800 900 1000 1100 1200 1300
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
020
4060
80100
120
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300
m/z (zoom)
MH₂²⁺-AMP
MH₂²⁺-AMP-H₂O
y₁₀²⁺-H₂O
603.07y₁₀3⁺
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f2_02_w01363
7990
Eif3j; Eif3s1; Eif3j; Eif3s1; ENSMUSG00000043424; mCG_11598; RP23-34E24.2-001; Q66JS6; Q2YDW1; Q3UGC7; Q66JW9; Q99JK5
93.58
ITMS; CID; 1
ac
_ A A A A
b₅
A
y₂₃²⁺
A
y₂₂²⁺
b₇
A
y₂₁²⁺
b₈
A
y₂₀²⁺
b₉
A
y₁₉²⁺
b₁₀
A
y₁₈²⁺
b₁₁
G
b₁₂²⁺
D
y₁₆²⁺
b₁₃
S D
y₁₄²⁺
b₁₅
S
y₁₃²⁺
W
y₁₂²⁺
D
b₁₈
A
y₁₀²⁺
D
y₉
b₂₀²⁺
T F S M E
y₄
D P V
adpr
R K _
b₅398.2
b₁₂²⁺463.2
b₇540.3
b₈611.3
b₉682.4
b₁₀753.4
b₁₁810.4
y₁₀²⁺875.8
b₂₀²⁺901.9
y₁₂²⁺968.9
b₁₃1012.5
y₁₃²⁺1026.4
y₄1040.4
y₁₄²⁺1119.4
b₁₅1214.5
y₁₆²⁺1220.4
y₁₈²⁺1321.5
y₁₉²⁺1350.0
y₂₀²⁺1385.5
y₂₁²⁺1421.0
y₂₂²⁺1456.5
y₂₃²⁺1492.1
b₁₈1586.7
y₉1649.6
1340.7
y₁₉²⁺-H2O
400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
010
2030
4050
6070
Intensity
400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
MH₂²⁺-adenine1658.9
1552.7
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_01_w01048
2362
Eif4ebp1; Q60876; Q3TII9
46.16
ITMS; CID; 1
ac
_ S A G
y₁₃²⁺
S S
y₁₁²⁺
C
b₇-H₂O
S
y₉²⁺
Q
y₈²⁺
b₉
T P
y₆²⁺
S
adpr
R
y₄
A
y₃
b₁₄
I P T R _
y₁₆3⁺
AMP348.1
y₃373.2
ADP428.0
y₄486.3
y₆²⁺627.8
b₇-H₂O661.2
y₈²⁺719.8
y₉²⁺770.3
y₁₁²⁺877.9
b₉-H₂O890.3
b₉908.3
b₁₄²⁺987.4
y₁₃²⁺1001.4
b₁₄-AMP1626.6
1106.0
1097.0
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
1088.0
MH₂²⁺-adenine-2H₂O
1049.1
1040.0
1000.1
MH₂²⁺-adenosine-H₂O
MH₂²⁺-adenosine-2H₂O
991.0
MH₂²⁺-AMP
MH₂²⁺-AMP-H₂O
740.1
733.8
y₁₆3⁺
y₁₆3⁺-H₂O
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
Intensity
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f8_01_w01053
2330
Eif4h; Wbscr1; mCG_16718; Eif4h; Wbscr1; mCG_16718; mKIAA0038; Q9WUK2-1; Q9WUK2; Q3V244; Q564E5; Q9WUK2-2; Q9WUK2; Q3TG58; Q80U88; Q9ET00
90.11
ITMS; CID; 1
_
y₁₁²⁺
A
y₁₀
b₂
Y
y₉²⁺
b₃
S
y₈²⁺
b₄
S
y₇²⁺
F
b₆-H₂O
G G G
adpr
R G S R _
a₂207.1
b₂235.1
adenosine - H2O250.1
b₃-H₂O304.1
b₃322.1
AMP348.1
b₄409.2
ADP428.0
y₇²⁺594.2
b₆-H₂O595.3
y₈²⁺667.7
y₉²⁺711.3
y₁₀²⁺754.8
y₁₁²⁺836.3
y₁₀-AMP1161.5
804.2
795.5
MH₂²⁺-adenine
786.3
738.3
698.2
689.27
503.8y₁₀3⁺
y₁₀3⁺-H2O497.6
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
600
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500
m/z (zoom)
MH₂²⁺-adenosine-H₂O
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
MH₂²⁺-AMP-H₂O
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
7505
Eif4h; Wbscr1; mCG_16718; Eif4h; Wbscr1; mCG_16718; mKIAA0038; Q9WUK2-1; Q9WUK2; Q3V244; Q564E5; Q9WUK2-2; Q9WUK2; Q3TG58; Q80U88; Q9ET00
38.74
ITMS; CID; 1
_ T
y₂₁²⁺
V
y₂₀²⁺
A
y₁₉²⁺
b₄
T P
b₆-H₂O
L N
y₁₅²⁺
Q
y₁₄²⁺
b₉-NH₃
V
y₁₃²⁺
b₁₀-H₂O
A
y₁₂²⁺
b₁₁
N
y₁₁-NH₃
P N S
y₈
A
y₇²⁺
b₁₆
I F
b₁₈²⁺
G G
b₂₀
A
adpr
R P R _
b₄
373.2
b₆-H₂O565.3
y₇²⁺651.2
b₁₆²⁺796.4
y₁₂²⁺892.4
b₁₈²⁺898.5
b₉-NH₃907.5
y₁₃²⁺949.4
b₁₀-H₂O977.5
y₁₄²⁺984.9
y₁₅²⁺1034.4
b₁₁1109.6
y₁₉²⁺1260.6
y₂₀²⁺1311.1
y₂₁²⁺1346.6
y₈1414.6
b₁₆1591.8
y₁₁-NH₃1669.6
b₂₀1924.0
840.7
y₁₉3⁺
834.9
y₁₉3⁺-H₂O 874.5y₂₀3⁺
1193.3y₁₉²⁺-adenine
1184.6y₁₉²⁺-adenine-H₂O
789.8y₁₉3⁺-adenine-H₂O
400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
Intensity
400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
1379.2
1369.8
1361.1
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
1322.2
MH₂²⁺-adenosine-H₂O
1273.1
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f2_01_w01047
7609
Eif5a; Ptms; P63242; Q9D0J8; Q66JR8; Q80WS9
80.16
ITMS; CID; 1
ac
_ A D D
y₂₂²⁺
b₄
L
y₂₁²⁺
b₅
D
y₂₀²⁺
b₆
F
y₁₉²⁺
b₇
E
y₁₈²⁺
T
y₁₇²⁺
G D
y₁₅²⁺
A G
y₁₃²⁺
b₁₃-H₂O
A
y₁₂
S
b₁₅-H₂O
A
y₁₀²⁺
T
y₉²⁺
F P
y₇²⁺
M Q C S A L
adpr
R K _
AMP348.1
ADP428.0
b₄457.2
b₅572.2
y₇²⁺702.3 b₆
719.3
y₉²⁺816.3
b₇848.3
y₁₀²⁺889.8
y₁₂²⁺975.9
y₁₃²⁺1019.4
y₁₅²⁺1083.4
y₁₇²⁺1176.5
y₁₈²⁺1205.0
y₁₉²⁺1255.497
b₁₃-H₂O1302.5
y₂₀²⁺1320.0
y₂₁²⁺1393.5 y₂₂²⁺
1451.066
b₁₅-H₂O1460.6
y₁₂-AMP1603.7
1611.7MH₂²⁺-adenine
1602.7
MH₂²⁺-adenine-H₂O
1593.7MH₂²⁺-adenine-2H₂O
1505.8MH₂²⁺-AMP
1496.7
MH₂²⁺-AMP-H₂O
1408.9
MH₂²⁺-ADPMH₃3⁺-2H₂O1108.0
400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
020
4060
80
Intensity
400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f7_01_w01052
3620
Erp; Erp60; Grp58; Pdia3; P27773
97.73
ITMS; CID; 1
_
adpr
R
y₁₀²⁺
L
y₉
b₃
A P
y₇
b₅
E Y
y₅
b₇²⁺
E
y₄
A
y₃
b₉²⁺
A
y₂
A T R _
adenosine - H2O250.1
y₂276.2
y₃347.2
AMP348.1
y₄418.2
ADP
428.0
y₅489.3
y₉²⁺504.2
y₁₀²⁺539.8
b₇²⁺700.7
b₉²⁺771.8
y₇781.38
b₃882.3
y₉1007.5
b₅1108.4
b₇-NH₃1383.45
877.4
868.2
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-AMP771.2
MH₂²⁺-adenosine-H₂O
MH₂²⁺-adenosine-2H₂O
820.5
811.8
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
800
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_02_w01364
5838
Errfi1; Mig6; mCG_1312; RP23-272N19.4-001; Q99JZ7; Q3TJN8; Q3TK48
107.09
ITMS; CID; 1
ac
_ S
y₁₃²⁺
T
y₁₂²⁺
b₃-H₂O
A
y₁₁²⁺
b₄
G
y₁₀²⁺
b₅
V
y₉²⁺
b₆
A
y₈²⁺
b₇
A
y₇²⁺
Q
b₉²⁺
D
y₅-NH₃
I
b₁₁²⁺
adpr
R
y₃
b₁₂²⁺
V P
b₁₄²⁺
L K _
b₃-H₂O284.1
AMP348.1
y₃357.2
b₄359.2
b₉²⁺422.2
ADP428.0
b₅-H₂O440.2
b₅458.2
b₆529.3
b₇600.3
y₇²⁺691.3
y₈²⁺755.3
y₉²⁺790.8
y₁₀²⁺826.4
b₁₁²⁺827.3
y₁₁²⁺875.9
b₁₂²⁺876.9
y₁₂²⁺904.4
y₁₃²⁺939.9
b₁₄²⁺981.9
y₅-NH₃1136.5
MH₂²⁺-adenine987.4
MH₂²⁺-adenine-H₂O978.4
MH₂²⁺-adenosine-H₂O930.8
MH₂²⁺-AMP881.4
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
600700
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f7_01_w01052
7725
Es31; Es31; Q8VCU1-1; Q8VCU1; Q8VCU1-2; Q8VCU1; Q63880-1; Q63880; Q63880-2; Q63880
66.26
ITMS; CID; 1
_ L
y₉
b₂
Q
y₈²⁺
b₃
F
y₇²⁺
W
y₆²⁺
T E T
y₃
b₈-H₂O
L
b₉-H₂O
P
adpr
R K _
b₂-NH₃225.1
b₂242.1
AMP348.1
b₃389.2
ADP
428.0y₃-AMP
594.3
y₆²⁺642.8
y₇²⁺693.3
y₈²⁺786.3
y₉²⁺859.9
b₈-H₂O1001.5
b₈-NH₃1002.5
b₉-H₂O1098.6 y₉-AMP
1371.6912.7
903.7
895.0
850.8y₉²⁺-H₂O
792.3y₉²⁺-adenine
1583.21469.8
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0500
10001500
20002500
3000
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (zoom)
855.9
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂OMH₂²⁺-adenosine-H₂O
y₉-adeniney₉-adenosine-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
3868
F11r; Jam1; Jcam; Jcam1; F11r; O88792; Q8VC39
76.07
ITMS; CID; 1
_
y₁₄²⁺
V
y₁₃²⁺
I
y₁₂²⁺
Y
y₁₁²⁺
b₄
S
y₁₀²⁺
b₅
Q P
y₈
S T
y₆²⁺
adpr
R S
y₄
b₁₁²⁺
E G
y₂
E F K _
y₂294.2
AMP348.1
y₆²⁺348.7
b₄463.3
y₄
480.2 b₅-NH₃574.3
b₅591.3
y₆-NH₃679.3
y₈²⁺747.8
y₁₀²⁺839.8
b₁₁²⁺895.3
y₁₁²⁺903.8
y₁₂²⁺947.4
y₁₃²⁺1028.9
y₁₄²⁺1085.4
y₈1494.5
1067.5MH₂²⁺-adenine
1010.1
MH₂²⁺-adenosine-H₂O
961.5
652.6
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
600
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700
m/z (zoom)
MH₂²⁺-AMP-H₂O
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liverf7_02_w01368
2041
Fam105b; Q3UCV8
76.14
ITMS; CID; 1
_ V
y₁₀*
b₂
T
y₉²⁺
b₃-H₂O
A
y₈
b₄
G
y₇²⁺
A
y₆²⁺
b₆-H₂O
Q P
y₄
b₈²⁺
adpr
R
b₉²⁺
A A T R _
b₂201.1
adenosine - H2O250.1
b₃-H₂O254.1
b₄329.2
AMP348.1
y₄418.2
ADP428.0
b₆-H₂O510.3
y₆²⁺606.7
b₈²⁺661.7
y₇²⁺670.8
b₉²⁺697.3 y₉²⁺
734.8
y₁₀²⁺770.3
y₁₀-AMP1192.5
b₉-NH₃1376.5
y₈1411.6
802.6
793.9
784.9745.7MH₂²⁺-adenosine-H₂O
687.8MH₂²⁺-AMP-H₂O
547.4
y₁₁3⁺
514.0
y₁₀3⁺
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
12001400
1600
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
3771
Fam63a; Ni; mCG_140520; Fam63a; Ni; Q76LS9-1; Q76LS9; B7ZMR0; Q6IS37; Q76LS9-2; Q76LS9; Q91VW2
63.68
ITMS; CID; 1
_ V E T A E
y₁₂²⁺
b₆
V
y₁₁²⁺
C
b₈-H₂O
S
y₉
b₉
adpr
R P
y₇
Q
y₆
E
y₅
b₁₃²⁺
L P Q S P R _
AMP348.1
ADP428.0
y₉²⁺526.3
y₅584.3
b₆629.3
y₆-NH₃680.4
y₆697.4
y₇826.4
b₈-H₂O858.4
y₁₁²⁺918.4
y₁₂²⁺998.4
b₁₃²⁺1020.9
y₉1051.6 b₉-NH₃
1556.5
b₉1573.5
1245.1
1235.8
1227.1
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
MH₂²⁺-adenosine-H₂O
1139.1MH₂²⁺-AMP
MH₂²⁺-AMP-2H₂O
1129.8
MH₂²⁺-AMP-H₂O
1041.8
MH₂²⁺-ADP ribose
1012.2b₁₃²⁺-H₂O
MH₂3⁺-2H₂O863.6
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
020
4060
80100
120140
160180
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
5611
Fkbp1; Fkbp1a; mCG_13187; RP23-419G21.5-001; FKBP12-Exip3; Fkbp1a; FKBP12-T1; Fkbp1a; FKBP12-T2; Fkbp1a; P26883; A2AT05; Q3UBA0; Q3ULN5; Q1JUQ6; Q1JUQ8; Q1JUQ7
97.2
ITMS; CID; 1
_ G V
y₁₄²⁺
Q
y₁₃²⁺
b₄
V
y₁₂²⁺
b₅
E
y₁₁²⁺
b₆
T
y₁₀²⁺
b₇
I
y₉²⁺
b₈
S
y₈²⁺
P
y₇
G
y₆
D G
adpr
R
y₃
T F P K _
adenosine - H2O250.1
AMP348.1
y₃-NH₃374.1
b₄384.2
y₃391.2
ADP428.0 b₅-H₂O
495.3
b₅513.3
b₆-H₂O596.3
b₆614.3
y₆²⁺623.7
y₈²⁺709.8
b₇727.4
y₉²⁺758.3
b₈-H₂O796.4
y₁₀²⁺801.8
b₈814.4
y₁₁²⁺858.3
y₆-AMP899.4
y₁₂²⁺908.9
y₁₃²⁺973.4
y₇-AMP1014.3
y₁₄²⁺1022.9
964.3
955.4
1097.6
1088.4
1079.6
991.4
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine
MH₂²⁺-adenine-2H₂O
MH₂²⁺-AMP
y₁₅3⁺725.1
719.2y₁₅3⁺-H2O
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
12001400
16001800
2000
Intensity
m/z (zoom)
y₁₃²⁺-H2O
y₁₃²⁺-2H2O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f5_01_w01050
5815
Gnmt; mCG_2695; RP23-76I16.4-001; Q9QXF8; A9C489; Q5I0T9; Q8C4E3
85.94
ITMS; CID; 1
_ T
y₂₀²⁺
b₂
adpr
R S
b₄-H₂O
L G
y₁₆²⁺
V
y₁₅²⁺
A
y₁₄
A
y₁₃
b₉
E
y₁₂²⁺
b₁₀²⁺
G
y₁₁
b₁₁
L P D
y₈
Q
y₇
Y
y₆
A
y₅
b₁₇²⁺
D G E A A R _
AMP348.1 ADP
428.0
y₅503.3
y₁₁²⁺596.8
y₆618.3
y₁₂²⁺653.3 y₇
689.3
b₉²⁺713.8
b₁₀²⁺742.3
y₁₅²⁺781.9
b₁₁²⁺798.8
b₂799.2
y₁₆²⁺817.4
y₈852.4
b₄-H₂O981.3
y₂₀²⁺995.5
b₁₇²⁺1143.5
y₁₁1192.5
1270.3
y₁₃1362.6
b₉1426.5
y₁₄1491.6
b₁₁1596.6
1327.7
1318.7
MH₂²⁺-adenine
1222.0
MH₂²⁺-AMP
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
Intensity
m/z (zoom)
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liverf7_02_w01368
7711
Gpx3; P46412
85.38
ITMS; CID; 1
_
y₈
M
y₇²⁺
b₂
D
y₆²⁺
b₃
I
b₄
L
b₅
S Y
b₇
M
adpr
R R _
y₅²⁺
b₂247.1
AMP348.1
b₃360.2
b₇²⁺427.7
b₄473.2
b₅560.3
y₆²⁺683.8
y₇²⁺740.3
y₈²⁺797.8
b₇854.4
y₈-AMP1247.5
795.7
786.9MH₂²⁺-adenine-H₂O
777.7MH₂²⁺-adenine-2H₂O
738.9MH₂²⁺-adenosine-H₂O
690.0MH₂²⁺-AMP
627.4
y₅²⁺
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
Intensity
m/z (zoom)
MH₂²⁺-adenine
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f5_01_w01050
7569
Gsb; Gsn; mCG_21267; RP23-186B18.2-001; Gsb; Gsn; RP23-186B18.2-004; mCG_21267; P13020-1; P13020; A2AL35; Q3TGJ9; Q3U9Q8; Q3UCW8; P13020-2; P13020; A6PWS5; Q6PAC1
66.87
ITMS; CID; 1
_ M Q
y₁₉²⁺
Y P
adpr
R Q T Q
y₁₃²⁺
b₉²⁺
V S
y₁₁
b₁₁
V
y₁₀
b₁₂
L
y₉
P E
b₁₅
G G
y₅
E
y₄
T P L F K _
AMP348.1
ADP428.0
y₄504.3
y₅605.4 y₁₃²⁺
687.4
b₉²⁺837.3
b₁₁²⁺930.4
y₉977.5
b₁₂²⁺986.9
y₁₀1074.5
y₁₁1187.6
y₁₉²⁺1312.6
b₁₁-AMP1512.7 b₁₂-AMP
1625.7 b₁₅-AMP1908.9
b₁₂1972.8
1456.5MH₂²⁺-adenine
1447.4
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O1399.2
400 600 800 1000 1200 1400 1600 1800 2000
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
800
Intensity
400 600 800 1000 1200 1400 1600 1800 2000
m/z (zoom)
1350.2
MH₂²⁺-AMP
MH₂²⁺-AMP-H₂O1341.5
1253.5
MH₂²⁺-ADP ribose
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f5_01_w01050
5833
Hcls1; Hs1; Hcls1; P49710; Q542G0; Q3V192; Q8CA06; Q922I8
102.37
ITMS; CID; 1
_ M S
y₂₀²⁺
adpr
R
y₁₉²⁺
E V
y₁₇²⁺
b₆
Q
y₁₆
b₇
Q P S
y₁₃
b₁₀
M P
b₁₂²⁺
V E
y₉
b₁₄²⁺
E P A
y₆
b₁₇²⁺
A P
y₄-NH₃
A
y₃
Q L P K _
AMP348.1
y₃357.2
ADP428.0
y₄-NH₃468.3
y₆653.4
y₁₃²⁺673.9
y₁₆²⁺831.4
b₁₀²⁺858.3
y₉892.5
y₁₇²⁺895.5
b₁₂²⁺956.4
y₁₉²⁺1009.0
y₂₀²⁺1073.5
b₁₄²⁺1085.4
b₁₇²⁺1205.0
b₆1272.4
y₁₃1346.7
b₇1400.5
y₁₆1661.9
b₁₀-H₂O1697.6
b₁₀-NH₃1698.6
b₁₀1715.6
y₁₆²⁺-NH₃822.9
1357.8MH₂²⁺-AMP
MH₂²⁺-adenine1463.5
1406.7MH₂²⁺-adenosine-H₂O
400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
300350
Intensity
400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f2_02_w01363
6776
Hmox1; Hmox1; P14901; Q3U5H8; Q3U5U6; Q3TVV4
99.75
ITMS; CID; 1
ac
_ M E
y₁₅²⁺
adpr
R
y₁₄
b₄
P
y₁₃
Q P
b₇
D
b₈-H₂O
S
y₉
b₉
M P
y₇
Q
y₆
b₁₂
D
y₅
L
y₄
S
y₃
E A L K _
y₃331.2
AMP348.1
ADP428.0
y₄-NH₃443.2
y₄460.3
y₉²⁺500.8
y₅547.3
y₆660.4
y₁₃²⁺715.8
b₇²⁺719.2
y₇775.4
y₁₄²⁺779.9
y₁₅²⁺828.4
b₁₂²⁺998.3
y₉1000.5
b₄1097.3
b₉-AMP1308.5
y₁₃-NH₃1413.7 y₁₃
1430.7
b₇1437.5
b₈-H₂O1506.5
y₁₄1558.7
b₉-H₂O1637.5
b₉-NH₃1638.5
b₁₂-AMP1648.6
b₉1655.5
1260.3
MH₂²⁺-adenine
1251.6
1203.7
1154.6
MH₂²⁺-AMP-H₂O
MH₂²⁺-AMP
y₁₅²⁺-H2O819.3
707.0y₁₃²⁺-H2O
400 600 800 1000 1200 1400 1600 1800 2000
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
300350
Intensity
400 600 800 1000 1200 1400 1600 1800 2000
m/z (zoom)
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_02_w01364
5433
Hpd; P49429
118.87
ITMS; CID; 1
_ G
y₁₃²⁺
N
y₁₂²⁺
b₃
L
y₁₁
b₄
T
y₁₀²⁺
b₅-H₂O
D
y₉²⁺
b₆-NH₃
L
y₈²⁺
b₇-NH₃
E P
y₆²⁺
N G
y₄
b₁₁
V
y₃
b₁₂²⁺
adpr
R S G M _
adenosine - H2O250.1
b₃-NH₃268.1
b₃285.2
y₃294.1
348.1
b₄386.2
b₅-H₂O483.2
b₅-NH₃484.2
y₆²⁺574.2
b₆-NH₃597.3
y₈²⁺679.7
b₇-NH₃726.3
y₉²⁺744.3
y₁₀²⁺800.8
y₁₁²⁺858.3
b₁₂²⁺904.4
y₁₂²⁺908.8
y₁₃²⁺965.4
y₄991.3
b₁₁-H₂O1092.5
b₁₁-NH₃1093.5
b₁₁1110.5
y₁₁-AMP1368.5
AMP
MH₂²⁺-adenine983.5
974.1MH₂²⁺-adenine-H₂O
877.2
MH₂²⁺-AMP
496.2
y₄²⁺
400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
Intensity
400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f2_01_w01047
7552
Iah1; Q9DB29
86.47
ITMS; CID; 1
ac
_ S L C E
y₁₁
adpr
R
y₁₀²⁺
b₆²⁺
A
y₉
b₇²⁺
A
y₈
S G S
y₅
b₁₁²⁺
A
y₄
b₁₂²⁺
L
y₃
b₁₃²⁺
L
y₂
b₁₄²⁺
W P R _
y₂272.2
AMP348.1
ADP428.0
y₃458.3
y₁₀²⁺529.3
y₄571.3
b₆²⁺650.7
y₅684.4
b₇²⁺686.2
b₁₁²⁺837.3
b₁₂²⁺893.8
y₈899.5
b₁₃²⁺950.4
y₉986.5
b₁₄²⁺1043.4
y₁₁1128.6
1102.5
1111.4
1093.6
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
1005.6
997.1
MH₂²⁺-AMP
MH₂²⁺-AMP-H₂O
941.4
b₁₃²⁺-H₂O
774.5
MH₃3⁺-2H₂O
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
020
4060
80
Intensity
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f4_01_w01049
9465
Ifi1; Iigp3; Irgm; Irgm1; Ifi1; Iigp3; Irgm; Irgm1; Ifi1; Irgm; Irgm1; RP23-14F5.1-003; Q60766-1; Q60766; Q60766-2; Q60766; Q5NCB5
56.95
ITMS; CID; 1
ac
_ A
y₂₈²⁺
E
y₂₇²⁺
T H
b₅
Y
b₆
A
b₇-H₂O
P
y₂₂²⁺
b₈
L S S
y₁₉²⁺
b₁₁²⁺
A
y₁₈²⁺
b₁₂
F P F
y₁₅²⁺
V
y₁₄²⁺
T
y₁₃²⁺
S Y Q T G
y₈-NH₃
S S
y₆
adpr
R
y₅
L P E V S R _
AMP348.1
ADP428.0
b₈²⁺463.2
b₁₁²⁺585.8
y₅587.3
b₅644.3
b₁₂²⁺659.3
y₆700.4
b₆715.3
b₇-H₂O794.3
b₈925.4
y₁₃²⁺1010.9
y₁₄²⁺1054.4
y₁₅²⁺1104.9
b₁₁-H₂O1152.5
y₁₈²⁺1276.5
b₁₂1317.6
y₁₉²⁺1350.1
y₈-NH₃1467.6
y₂₂²⁺1472.6
y₂₇²⁺1763.3
y₂₈²⁺1813.8
1245.4
1239.7
1174.7MH₂3⁺-AMP
MH₂3⁺-adenine-H₂O
MH₂3⁺-adenine
851.5y₁₈3⁺
900.6y₁₉3⁺
1095.256
b₂₅3⁺
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_02_w01367
9927
Itgb1; P09055; Q8BUD1
79.8
ITMS; CID; 1
_ N
y₁₈²⁺
V
b₃
L S
y₁₅²⁺
b₅-H₂O
L
y₁₄²⁺
T
y₁₃²⁺
b₇
D
b₈²⁺
adpr
R G
y₁₀
b₁₀²⁺
E
b₁₁²⁺
F
y₈
F
b₁₃²⁺
N
y₆
E
y₅
b₁₅²⁺
L
y₄
b₁₆²⁺
V G
y₂
Q Q R _
y₂303.2
b₃327.2
AMP348.1
y₄488.3
b₅-H₂O509.3
y₅587.3
y₆700.4
b₈²⁺720.8
b₇743.4
b₁₀²⁺813.8 b₁₁²⁺
887.3
y₈943.5
b₁₃²⁺
1017.903
y₁₃²⁺1060.9
y₁₄²⁺1118.4
b₁₅²⁺1139.0
y₁₅²⁺1169.0
b₁₆²⁺1188.5
y₁₀1237.6
y₁₈²⁺1325.6
1364.7
1355.7
1307.9
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O
MH₂²⁺-adenine
1258.5
1250.0
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
020
4060
80100
120140
160180
200
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (zoom)
MH₂²⁺-AMP-NH₃
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f2_02_w01363
5645
Lcp1; Pls2; Q61233; Q3TJX0; Q3U6N7; Q3U6Z1; Q3U9M7
105.99
ITMS; CID; 1
ac
_ A
y₁₂
adpr
R G
y₁₀
S
y₉
V
b₆
S
y₇²⁺
b₇²⁺
D
y₆
b₈²⁺
E
b₉²⁺
E
y₄
b₁₀
M
y₃
b₁₁²⁺
M
y₂
b₁₂²⁺
E L R _
y₂288.2
AMP348.1
y₃417.2
ADP428.0
y₇²⁺469.2
y₄
548.3 y₁₀²⁺619.8
b₇²⁺628.7
b₈²⁺693.2
b₉²⁺757.7
y₆808.4
b₁₀²⁺823.3
b₁₁²⁺888.8
b₁₂²⁺953.3
b₆-NH₃1124.3
y₉1139.5
b₆1141.4
y₁₀1238.5
b₁₀-AMP1298.4
y₁₂1382.6
MH₂²⁺-ADP ribose
200 400 600 800 1000 1200 1400 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
020
4060
80100
120140
160180
Intensity
200 400 600 800 1000 1200 1400 1600
m/z (zoom)
1029.5
1020.5
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O
1011.2
MH₂²⁺-adenine-2H₂O
972.4
923.5
MH₂²⁺-AMP
MH₂²⁺-AMP-H₂O914.2
826.3
MH₂²⁺-adenine
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_02_w01367
10095
Mcm2; Serpina3k; Spi2; P07759
96.49
ITMS; CID; 1
_ A
y₂₂²⁺
V
y₂₁²⁺
L
y₂₀²⁺
b₄
D
y₁₉²⁺
b₅
V
y₁₈²⁺
b₆
A
y₁₇²⁺
b₇
E
y₁₆²⁺
b₈
T
y₁₅²⁺
G T
y₁₃²⁺
E A A A
y₉²⁺
A T G
b₁₈²⁺
V I
b₂₀²⁺
G G I
b₂₃²⁺
adpr
R K _
AMP348.1
b₄399.2
ADP
428.0
b₅498.3
b₆569.3
b₇698.4
y₉²⁺721.3
b₈799.4
b₁₈²⁺814.4
y₁₃²⁺
863.3897
b₂₀²⁺899.5
y₁₅²⁺978.4
y₁₆²⁺1006.9
y₁₇²⁺1057.5
y₁₈²⁺1122.0
y₁₉²⁺1157.5
y₂₀²⁺1207.0
y₂₁²⁺1264.6
1281.6
y₂₂²⁺1321.1
b₂₃²⁺1333.1
1148.6y₁₉²⁺-H₂O
1112.9y₁₈²⁺-H₂O
1048.2y₁₇²⁺-H₂O
y₂₀²⁺-NH₃
1198.6
y₁₉²⁺-AMP983.6 1232.7
MH₂²⁺-AMP
MH₂²⁺-adenosine-H₂O
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f5_01_w01050
7497
Mcm2; Serpina3k; Spi2; P07759
94.38
ITMS; CID; 1
_ A
y₂₂²⁺
V
y₂₁²⁺
L
y₂₀²⁺
b₄
D
y₁₉²⁺
b₅
V
b₆
A
y₁₇²⁺
b₇
E
y₁₆²⁺
b₈
T G T E A A A A T G
b₁₈²⁺
V I G G I
ri
R K _
y₁₈²⁺
b₄399.2
b₅498.3
b₆-H₂O551.3
b₆569.3 b₇-H₂O
680.3
b₇698.4
b₈799.4
b₁₈²⁺
y₁₆²⁺842.4
y₁₇²⁺892.9
957.5
y₁₉²⁺993.0
y₂₀²⁺1042.5
y₂₁²⁺1100.0
y₂₂²⁺1156.6
814.4
833.9y₁₆²⁺-H₂O
y₂₂3⁺
y₂₂3⁺-H₂O
y₁₈²⁺
948.3
y₁₈²⁺-H₂O
1090.9y₂₁²⁺-H₂O
1147.6y₂₂²⁺-H₂O
984.1y₁₉²⁺-H₂O
400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
02000
40006000
Intensity
400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (zoom)
771.4
765.8
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
o05357
4999
Mg53; Trim72; Q1XH17
107.74
ITMS; CID; 1
_
adpr
R E
y₁₁
L
y₁₀
S
y₉
S
y₈
b₆²⁺
L
y₇
b₇
N
y₆
S
y₅
Y
y₄
b₁₀
L
y₃
b₁₁
E
y₂
Q L R _
adenosine - H2O250.1
y₂288.2
AMP348.1
y₃416.3
ADP428.0 y₄
545.3
b₆²⁺614.2
y₅658.4
b₇²⁺671.2
y₆821.5
b₁₀²⁺852.8
y₇908.5
b₁₁²⁺917.4
y₈1022.5
y₉1135.6
b₆-H₂O1209.4
y₁₀1222.6
y₁₁1309.7
b₇-H₂O1323.5
b₇1341.5
b₁₀-AMP1357.6
b₁₁-AMP1486.6
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
12001400
1600
Intensity
m/z (zoom)
1057.8
1048.5
1039.5
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
MH₂²⁺-adenosine-H₂O
951.7MH₂²⁺-AMP
942.4MH₂²⁺-AMP-H₂O
738.6MH₂²⁺-2H₂O
732.2MH₂²⁺-3H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
o05396
4998
Mg53; Trim72; Q1XH17
108.56
ITMS; CID; 1
_
ri
R E L
b₄-H₂O
S
b₅-H₂O
S
y₈
b₆²⁺
L
y₇
b₇²⁺
N
y₆
b₈
S
y₅
b₉
Y
y₄
b₁₀²⁺
L
y₃
b₁₁²⁺
E
y₂
b₁₂²⁺
Q
b₁₃²⁺
L R _
y₂288.2
y₃416.3
b₆²⁺449.7
y₇²⁺454.7
b₇²⁺506.7
y₄545.3
b₈²⁺550.2
b₉²⁺631.4 y₅
658.4
b₄-H₂O680.3
b₁₀²⁺688.3
b₁₁²⁺752.8
b₅-H₂O767.3
b₁₂²⁺816.9 y₆
821.5
b₁₃²⁺873.4
y₇908.5
y₈1022.5 b₈
1099.5 b₉1262.5
b₁₃²⁺-H₂O864.4
679.4b₁₀²⁺-H₂O
622.3
b₉²⁺-H₂O
752.9b₁₁²⁺-H₂O
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
600700
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
o05353
6865
Mg53; Trim72; Q1XH17
55.47
ITMS; CID; 1
_ I L S E
b₅
S
b₆
P
y₁₆²⁺
b₇
P P
y₁₄²⁺
A
adpr
R L D I
y₉²⁺
b₁₄²⁺
Q
y₈
b₁₅
L
y₇
P V
y₅
I
y₄
S D
y₂
D F K _
b₁₆3⁺
adenosine - H2O250.1
y₂294.2
AMP348.1
y₈²⁺460.7
b₅-H₂O512.3
y₉²⁺517.3
y₄524.2
b₅530.3
y₅611.3
b₆627.3
b₇724.4
y₇823.4
y₈920.5
b₁₄²⁺1029.9
b₁₅²⁺1086.5
y₁₄²⁺1100.5
y₁₆²⁺1184.5
b₁₅-AMP1824.9
b₁₅²⁺-H₂O1077.3
1021.3
b₁₄²⁺-H₂O
854.9
y₁₈3⁺
833.7y₁₉3⁺
b₁₄3⁺687.3
725.1b₁₅3⁺
757.0
b₁₆3⁺
200 400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
800
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (zoom)
y₁₈3⁺y₁₉3⁺
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
o05391
6497
Mg53; Trim72; Q1XH17
91.59
ITMS; CID; 1
_ I
y₂₁²⁺
L S
y₁₉²⁺
E
y₁₈²⁺
b₅
S
y₁₇²⁺
b₆
P
b₇-H₂O
P P
b₉-H₂O
A
b₁₀
ri
R L
y₁₁
b₁₂²⁺
D I
y₉
b₁₄
Q
y₈-NH₃
b₁₅
L P
y₆
V
y₅
I
y₄
S D
y₂
b₂₁²⁺
D F K _
y₂294.2
b₅-H₂O512.3
y₄524.2
b₅530.3
y₅611.3
b₆627.3
b₇-H₂O706.4
y₆724.4
b₁₂²⁺744.9
b₁₄²⁺865.4
b₉-H₂O874.5
y₈-NH₃903.4
y₉1033.6
y₁₇²⁺1068.5
y₁₈²⁺1117.1
y₁₉²⁺1160.6
b₁₀-phosphate1162.6
b₂₁²⁺1235.1
b₁₀1260.6
y₂₁²⁺1268.6
y₁₁1274.7
b₁₄-H₂O1711.8
b₁₄1729.8 b₁₅-H₂O
1824.9
b₁₅1842.9
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
600
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f7_01_w01052
7328
Mms2; Ube2v2; Uev2; mCG_126823; mCG_127675; RP23-310H3.1-001; mCG_126823; RP23-310H3.1-003; Ube2v2; Q9D2M8-1; Q9D2M8; Q4VBX4; A6X925
67.65
ITMS; CID; 1
_
y₁₅²⁺
W
y₁₄
T
b₃-H₂O
G
y₁₂²⁺
b₄-H₂O
M
y₁₁²⁺
b₅
I
y₁₀
b₆
I
y₉²⁺
b₇
G P P
y₆
adpr
R
y₅
T N Y E N R _
adenosine - H2O250.1
b₃-H₂O327.1
AMP348.1
ADP428.0
b₄-H₂O458.2
b₅-H₂O571.3
b₅589.3
y₅
695.3
b₆702.4
b₇759.4
y₆796.4
y₉²⁺844.3
y₁₀²⁺872.8
y₁₁²⁺929.4
y₁₂²⁺985.9
y₁₄²⁺1079.9
y₁₅²⁺1130.5
y₁₀-AMP1397.6
y₁₄-AMP1811.8
1156.2
1147.1
1138.6
1098.5
1050.2MH₂²⁺-AMP
1041.1MH₂²⁺-AMP-H₂O
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
Intensity
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenosine-H₂O
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f7_01_w01052
3692
Kiaa1248; Ndr2; Ndrg2; Kiaa1248; Ndr2; Ndrg2; Q9QYG0-1; Q9QYG0; Q8CGR9; Q9QYG0-2; Q9QYG0; Q9CTJ5
56.57
ITMS; CID; 1
_ T
y₁₄²⁺
A
y₁₃²⁺
b₃-H₂O
S
y₁₂²⁺
b₄
L
y₁₁²⁺
b₅
T
y₁₀²⁺
S
y₉²⁺
A A S I
b₁₁
D G S
y₂
adpr
R S R _
b₃-H₂O242.1
y₂262.2
AMP348.1
b₄-H₂O355.2
b₄373.2 ADP
428.0
b₅-H₂O456.2
b₅474.3
y₉²⁺745.3
y₁₀²⁺780.8
y₁₁²⁺824.3
y₁₂²⁺874.8
y₁₃²⁺931.4
y₁₄²⁺974.9
b₁₁1018.5
993.4
936.9
MH₂²⁺-adenine
MH₂²⁺-adenosine-H₂O
887.6MH₂²⁺-AMP
MH₂²⁺-ADP ribose
966.1
y₁₄²⁺-H₂O650.7
y₁₄3⁺-H₂O644.5
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
01000
20003000
4000
Intensity
m/z (zoom)
789.8
MH₃3⁺-H₂O695.8
y₁₄3⁺
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
8375
Nipsnap1; mCG_14685; RP23-64E17.1-001; Nipsnap1; O55125; Q5SVF7; Q3UGS1
69.6
ITMS; CID; 1
_
adpr
R G W D E N
y₈
b₇²⁺
V
y₇
b₈²⁺
Y
y₆
b₉²⁺
Y
y₅
b₁₀²⁺
T
y₄
b₁₁²⁺
V
b₁₂²⁺
P L V R _
AMP348.1
ADP428.0
y₄484.3
y₅583.4
y₆684.4
b₇²⁺699.7
b₈²⁺781.3
y₇847.5
b₉²⁺862.8
b₁₀²⁺913.3
b₁₁²⁺962.9
y₈1010.6
b₁₂²⁺
1011.4
1137.2
MH₂²⁺-adenine
1128.0
MH₂²⁺-adenine-H₂O
1118.8
MH₂²⁺-adenine-2H₂O
1079.2
1031.2MH₂²⁺-AMP
954.0
903.9
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
020
4060
80
Intensity
m/z (zoom)
MH₂²⁺-adenosine-H₂Ob₁₁²⁺-H₂O
b₁₀²⁺-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_02_w01364
8701
Np; Pnp; Pnp1; Pnp; Pnp1; P23492; Q543K9
162.22
ITMS; CID; 1
_ F
y₁₄
b₂
V
b₃
S
y₁₂²⁺
b₄
I
y₁₁²⁺
b₅
L
y₁₀²⁺
b₆
M
y₉²⁺
E
y₈²⁺
b₈
S
y₇
b₉-H₂O
I
y₆²⁺
P
y₅
b₁₁
L P D
adpr
R G S _
b₂247.1
b₃-H₂O316.2
b₃334.2
AMP
348.1
ADP428.0
b₄-H₂O429.2
b₄447.3
b₅-H₂O542.3
b₅560.3
y₆²⁺593.2
y₇²⁺641.7
b₆-H₂O673.4
b₆691.4
y₈²⁺698.3
y₉²⁺741.8
y₁₀²⁺806.3
y₁₁²⁺871.8
b₈907.5
y₁₂²⁺928.4
b₉-H₂O1002.5
y₁₄²⁺1028.4
y₅1072.3
b₁₁-H₂O1212.7
b₁₁
1230.7
y₇1282.4
1708.8
b₉-H₂O
y₁₄²⁺-NH₃
862.73
632.9
y₁₄-AMP
m/z (full)
020
4060
8010
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
Intensity
m/z (zoom)
1034.2MH₂²⁺-adenine
1075.0MH₂²⁺-adenine-H₂O
1020.0
y₁₄²⁺-H₂O 1019.2
y₁₂²⁺-H₂O 919.5
y₁₁²⁺-H₂O
797.2y₁₀²⁺-H₂O
y₇²⁺-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f4_02_w01365
7388
Pah; Pah; P16331; Q3UEH8; Q91WV1
79.09
ITMS; CID; 1
ac
_ A
y₁₁²⁺
A
y₁₀²⁺
b₃
V
y₉²⁺
b₄
V
y₈²⁺
b₅
L
y₇²⁺
E
y₆²⁺
N
b₈
G
b₉-NH₃
V L
b₁₁
S
adpr
R K _
b₃284.2
AMP
348.1
b₄383.2
ADP428.0
b₅496.3
y₆²⁺600.7 y₇²⁺
657.8
y₈²⁺722.3
y₉²⁺778.8
b₈-NH₃779.4
b₈796.4
y₁₀²⁺828.4
y₁₁²⁺877.9
b₉-NH₃878.5
b₁₁1095.6
902.5MH₂²⁺-adenine
893.26
MH₂²⁺-adenine-H₂O
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
12001400
16001800
2000
Intensity
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f9_01_w01054
6400
Pbp; Pebp; Pebp1; Pbp1; mCG_7941; P70296; Q3TGC5; Q5EBQ2
104.17
ITMS; CID; 1
_ L
y₁₆²⁺
Y
y₁₅²⁺
b₃-H₂O
T
y₁₄²⁺
b₄
L
y₁₃²⁺
b₅
V
y₁₂²⁺
L
y₁₁²⁺
T
y₁₀
b₈
D P
y₈²⁺
D A P S
adpr
R K
y₂
b₁₆²⁺
D P K _
y₂244.2
AMP348.1
b₃-H₂O360.2
ADP428.0
b₄491.3
b₅-H₂O572.3
b₅
590.3548
y₈²⁺720.3
y₁₀²⁺826.3
y₁₁²⁺883.8
b₈919.5
y₁₂²⁺934.4
y₁₃²⁺990.9
y₁₄²⁺1040.4
y₁₅²⁺1097.0
y₁₆²⁺1147.5
b₁₆²⁺1164.0
y₁₀-AMP1304.6
1218.2
MH₂²⁺-adenine
1209.3b₁₆²⁺-H₂O
1164.0
1112.2
MH₂²⁺-AMP-H₂O
MH₂²⁺-AMP
1103.3
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
020
4060
80100
120
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (zoom)
MH₂²⁺-adenine-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
7215
Pdap1; mCG_17262; Q3UHX2; B2RTB0; Q1WWJ8
65.47
ITMS; CID; 1
_ G V
y₁₆²⁺
E G
y₁₄²⁺
b₅
I
y₁₃²⁺
b₆
I
y₁₂²⁺
b₇
D I
y₁₀²⁺
b₉
E
y₉²⁺
N P
b₁₂²⁺
N
mo
R
y₅
b₁₄²⁺
V
b₁₅²⁺
A
b₁₆²⁺
Q T
b₁₈²⁺
T K _
AMP348.1
b₅456.2
y₅548.3
b₆569.3
b₁₂²⁺626.3
b₇684.4
y₉²⁺778.3
y₁₀²⁺835.3
b₉926.5
y₁₂²⁺956.4
y₁₃²⁺1013.9
b₁₄²⁺1024.4
b₁₅²⁺1059.9
y₁₄²⁺1070.5
b₁₆²⁺1124.0
y₁₆²⁺1155.512
b₁₈²⁺1225.0
1230.3
1221.7
1173.6
1212.6
MH₂²⁺-adenine
MH₂²⁺-adenosine-H₂O-NH₃
MH₂²⁺-adenosine-H₂O
MH₂²⁺-adenine-NH₃
1115.8
1124.8
MH₂²⁺-AMP-H₂O
MH₂²⁺-AMP
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400
Intensity
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
9281
Pgm2; RP24-156I23.2-002; Pgm2; RP24-156I23.2-001; Pgm1; A2CEK3; Q3U6X6; Q3UGE3; Q5RJV4; Q66JR7; Q7TNU0; Q99JW6; Q9D0F9
130.01
ITMS; CID; 1
_ D
y₁₂²⁺
a₂
L
y₁₁
b₃
E
y₁₀²⁺
b₄
A
y₉²⁺
b₅
L
y₈
b₆
M
y₇²⁺
b₇
L
y₆
D
adpr
R S F
y₂
V G K _
a₂201.1
y₂204.1
AMP348.1
b₃358.2
ADP428.0
b₄429.2
b₅542.3
y₆²⁺
617.7
b₆673.3
y₇²⁺675.2
y₈²⁺731.8
b₇-H₂O768.4
b₇
786.4
y₉²⁺797.3
y₁₀²⁺853.9
y₁₁²⁺889.4
y₁₂²⁺953.9
y₆1234.5
y₁₁1777.7
944.8y₁₂²⁺-H₂O
1000.6
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O991.3
894.3MH₂²⁺-AMP
200 400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
1200
Intensity
200 400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_02_w01364
4800
Kiaa1092; Plce2; Plcl2; Q8K394
64.38
ITMS; CID; 1
ac
_ A E C
y₁₉²⁺
G
b₅
adpr
R
b₆
G A
y₁₅
b₈
A
b₉
G
b₁₀²⁺
G
y₁₂
b₁₁
A
y₁₁
b₁₂
L
b₁₃²⁺
P
y₉
T
y₈
S
y₇
b₁₆²⁺
P S P A L G A K _
AMP348.1
y₁₁²⁺513.3
y₁₂²⁺569.8
y₇643.4
b₁₀²⁺735.7
y₈740.4
b₁₁²⁺771.2
y₉827.5
b₁₃²⁺876.3
b₁₆²⁺1018.9
y₁₁1025.6
y₁₉²⁺1110.5
y₁₂-NH₃1121.6
y₁₂1138.6
b₅1157.3
b₆1214.3
b₁₂-AMP1307.5
y₁₅1323.73
b₈1356.4
b₉1413.4
b₁₁1541.5
b₁₂1654.6
1272.6
1263.6
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O1215.5
1166.5MH₂²⁺-AMP
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
020
4060
80100
120140
160
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
8891
mKIAA0106; Prdx6; Aop2; Ltw4; Prdx5; Prdx6; Q6A0D0; Q6GT24; O08709; Q53ZU7
71.59
ITMS; CID; 1
_ P G G L
b₅
L
y₁₇²⁺
b₆
L
y₁₆²⁺
b₇
G
y₁₅²⁺
b₈
D
y₁₄²⁺
b₉
E
y₁₃²⁺
b₁₀
A P
b₁₂
N
y₁₀²⁺
b₁₃²⁺
F
y₉²⁺
E
b₁₅
A N T
b₁₈-NH₃
T I G
adpr
R I R _
b₉²⁺426.7
b₅438.3
b₁₀²⁺
462.2
b₆551.4
b₁₂²⁺567.8
b₇608.4
b₁₃²⁺641.3
b₈
723.4y₉²⁺
771.8
y₁₀²⁺836.3
b₉852.4
b₁₀923.5
y₁₃²⁺1015.4
y₁₄²⁺
1050.9
y₁₅²⁺1115.5
b₁₂-H₂O1116.6
b₁₂
1134.6
y₁₆²⁺1173.0
y₁₇²⁺
1201.5
b₁₅
1481.7b₁₈-NH₃
1780.8
677.5
y₁₃3⁺
671.8y₁₃3⁺-H₂O
1006.7y₁₃²⁺-H₂O
934.0MH₂²⁺-adenine-H₂O
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0500
10001500
2000
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f5_01_w01050
7762
mKIAA0106; Prdx6; Aop2; Ltw4; Prdx5; Prdx6; Q6A0D0; Q6GT24; O08709; Q53ZU7
73.11
ITMS; CID; 1
_ P
y₂₁²⁺
G G L
b₅
L
y₁₇²⁺
b₆
L
b₇
G
b₈
D
y₁₄
E
y₁₃²⁺
b₁₀
A P
y₁₁
b₁₂-H₂O
N
y₁₀²⁺
F
b₁₄
E
y₈
b₁₅
A
b₁₆
N
y₆²⁺
b₁₇-H₂O
T T
b₁₉
I G
adpr
R I R _
AMP348.1
ADP428.0
b₅438.3
b₆551.4
b₇608.4
y₆²⁺628.8
b₁₄²⁺705.8
b₈723.4
y₁₀²⁺836.3
b₁₀923.5
y₁₃²⁺1015.4
y₁₄²⁺1050.9
b₁₂-H₂O1116.6
y₈-AMP1124.5
y₁₇²⁺1201.5
y₂₁²⁺1399.6
b₁₄1410.7
b₁₅-NH₃1464.7
y₁₁-AMP1471.7
b₁₅1481.7
b₁₆1595.8
b₁₇-H₂O1678.8
y₁₄-AMP
1753.8
b₁₉1910.9
1352.2
1303.3
MH₂²⁺-adenosine-H₂O
1294.7
MH₂²⁺-AMP-H₂O
933.9MH₃3⁺-adenine-H₂O
MH₃3⁺-adenine-2H₂O927.9
901.8
MH₃3⁺-adenosine-H₂O
869.3
863.2
MH₃3⁺-AMP-H₂O
MH₃3⁺-AMP
400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
02000
40006000
8000
Intensity
400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
8853
mKIAA0106; Prdx6; Aop2; Ltw4; Prdx5; Prdx6; Q6A0D0; Q6GT24; O08709; Q53ZU7
88.55
ITMS; CID; 1
_ P G
y₂₀²⁺
G
y₁₉²⁺
b₄
L
y₁₈²⁺
b₅
L
y₁₇²⁺
b₆
L
y₁₆²⁺
b₇
G
y₁₅²⁺
b₈
D E
y₁₃²⁺
b₁₀
A P N
b₁₃-NH₃
F
y₉²⁺
b₁₄
E A
y₇
N
y₆²⁺
b₁₇-H₂O
T
y₅
T I G
ri
R I R _
b₄325.2
b₅438.3
y₆²⁺464.2
b₆551.4
y₉²⁺607.3
b₇608.4
b₈723.4 y₅
826.4
y₁₃²⁺850.9
y₆-NH₃910.4
b₁₀923.5
y₁₅²⁺950.9 y₁₆²⁺
1008.5
y₇1028.5
y₁₇²⁺1037.0
y₁₈²⁺1093.5
y₁₉²⁺1150.0 y₂₀²⁺
1206.6
b₁₃-NH₃1264.6
b₁₄-H₂O1392.7
b₁₄1410.7
b₁₇-H₂O1678.8
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_02_w01364
5860
Prl2; Ptp4a2; mCG_13525; RP23-114O4.2-001; O70274; A2ACH4; Q3UXF9
92.86
ITMS; CID; 1
ac
_ M N
y₁₂
b₃
adpr
R P
y₁₀
b₅
A P
y₈
b₇²⁺
V
y₇
b₈²⁺
E I
b₁₀²⁺
S
y₄
Y
y₃
E N M R _
AMP348.1
y₃420.2
ADP428.0
y₇²⁺
456.7
y₄549.2
y₁₀²⁺619.3
b₇²⁺675.3
y₁₂²⁺703.3
b₈²⁺739.8
b₁₀²⁺839.8
y₇912.4
b₃985.3
y₈1041.5
b₅
1153.4y₁₀
1237.6y₁₂
1405.7
1128.0
MH₂²⁺-adenine
11118.8MH₂²⁺-adenine-H₂O
1070.7
MH₂²⁺-adenosine-H₂O
1021.8
MH₂²⁺-AMP
839.8b₁₀²⁺-H₂O
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
020
4060
80100
120140
160180
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liverf7_02_w01368
2289
Ptma; mCG_133549; Gm12504; mCG_1041267; OTTMUSG00000007209; P26350; Q0VGU2; Q3U6E4; Q3U8X6; Q3UA54; Q8C2T3; Q8CAQ5
102.97
ITMS; CID; 1
_
adpr
R
y₁₂
b₂
V
y₁₁
A
y₁₀
E
y₉
D
b₆
D
y₇
b₇²⁺
E
b₈
D
b₉²⁺
D
y₄
b₁₀²⁺
D V
y₂
b₁₂
D T K _
y₂248.2
AMP348.1
ADP428.0
y₄462.3 y₁₀²⁺
583.7
b₆²⁺614.2
b₇²⁺
678.7
y₁₂²⁺683.8 y₇-NH₃
790.3
b₉²⁺793.7
b₂797.2
y₇807.3
b₁₀²⁺851.3
b₁₂²⁺958.3
y₉1051.4
y₁₀1166.4
b₆
1227.4
y₁₁1295.5
y₁₂
1366.5
b₈1471.4
b₁₂-AMP1568.5
1014.4MH₂²⁺-adenine
1005.3
957.3
908.5
899.7 947.4b₁₂²⁺-H₂O
781.5b₂-H₂O
200 400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200
Intensity
200 400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine
MH₂²⁺-AMP
MH₂²⁺-AMP-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_02_w01364
6628
Rab11b; mCG_22989; Rab11B; RAB11B; Rab11; Rab11a; mCG_12782; Rab11A; Rab11b; P46638; Q78ZJ8; P62492; P97345; Q0PD45; Q3UZ37; Q9QWU0
77.19
ITMS; CID; 1
ac
_ G T
y₉
b₃-H₂O
adpr
R
y₈
b₄
D
y₇
b₅
D
y₆
E
y₅
Y
y₄
b₈
D
y₃
Y
b₁₀
L F K _
AMP
348.0704
y₃
407.2653
ADP428.0367
y₄
570.3286
y₅
685.3556
b₈²⁺768.2216
b₅-AMP781.24
y₆848.4
b₃-H₂O880.2
y₇977.5
b₄
1013.3
y₈1092.5
b₅
1128.3
b₈-AMP1188.4
y₉1207.5
b₈-H₂O1517.4
b₈1535.4
b₁₀1811.6
985.4
976.46
967.2
MH₂²⁺-adenosine-H₂O
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
928.1
879.3
870.8MH₂²⁺-AMP-H₂O
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_02_w01364
6575
Rab11b; mCG_22989; Rab11B; RAB11B; Rab11; Rab11a; mCG_12782; Rab11A; Rab11b; P46638; Q78ZJ8; P62492; P97345; Q0PD45; Q3UZ37; Q9QWU0
172.13
ITMS; CID; 1
ac
_ G T
y₉
ri
R
y₈
b₄
D
y₇
b₅
D
y₆
b₆
E
b₇
Y
y₄
b₈
D
y₃
b₉
Y
y₂
b₁₀
I
b₁₁
F K _
y₂294.2
y₃407.3
y₄570.3
b₄-NH₃667.2
b₄684.2
b₅-NH₃782.2
b₅799.3
y₆848.4
b₆-H₂O910.3
b₆928.3
y₇-NH₃960.4
y₇977.5
b₇-H₂O1073.3b₇
1091.4
y₈1092.5
b₈-H₃PO₄1108.4
b₈-H₂O1188.4
b₈-NH₃1189.4
b₈1206.4
y₉1207.5
b₉-H₂O1351.4b₉-NH₃
1352.4
b₉1369.4
b₁₀-NH₃1465.5
b₁₀1482.5
b₁₁-H₂O1611.6
b₁₁1629.6
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (zoom)
MH₂²⁺-H₂O879.5
870.3MH₂²⁺-2H₂O
839.5MH₂²⁺-H₃PO₄
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
3653
Scfd1; Stxbp1l2; Scfd1; Stxbp1l2; Scfd1; Stxbp1l2; Q8BRF7-1; Q8BRF7; Q8BRF7-3; Q8BRF7; Q8BRF7-2; Q8BRF7
65.11
ITMS; CID; 1
_ V
y₁₇²⁺
N
y₁₆²⁺
b₃
L
y₁₅²⁺
E
y₁₄²⁺
b₅
E
y₁₃²⁺
b₆-H₂O
S T G
y₁₀²⁺
b₉-NH₃
V E
b₁₁
N
b₁₂
S P
b₁₄
A
y₄
G A
adpr
R P K _
b₃327.2
AMP348.1
ADP
428.0
b₅585.3
b₆-H₂O654.3
y₁₀²⁺784.3
b₉-NH₃912.4
y₁₃²⁺912.9
y₁₄²⁺956.4
y₄1012.4
y₁₅²⁺1020.9
y₁₆²⁺1085.4
y₁₇²⁺1142.0
b₁₁-H₂O1154.5
b₁₁1172.5
b₁₂1259.6
b₁₄1427.7
1181.0MH₂²⁺-adenine
1074.7
MH₂²⁺-AMP
820.9MH₃3⁺-2H₂O
799.8y₁₇3⁺
894.1y₁₃²⁺-H₂O
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
Intensity
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_01_w01048
4931
Sec14l4; mCG_9615; RP23-81P12.7-001; Q8R0F9; Q5SQ22
89.51
ITMS; CID; 1
ac
_ M
adpr
R
b₃
G
y₁₄
Q
y₁₃
V G
y₁₁²⁺
b₇²⁺
D
y₁₀²⁺
b₈
L
y₉
b₉-H₂O
S
y₈
P
y₇
Q
y₆
b₁₂²⁺
Q
y₅
b₁₃²⁺
Q
y₄
E
y₃
A L A R _
348.1
y₃359.2
y₄430.3
y₉²⁺520.8
y₅559.3
y₁₀²⁺564.3
y₁₁²⁺620.8
b₇²⁺664.2
y₆687.4
y₁₃²⁺706.9
b₈²⁺720.8
y₁₄²⁺756.4
y₇815.4
b₃928.2
b₁₂²⁺940.9
y₈943.5
b₁₃²⁺1004.9
y₉1040.5
1110.6
y₁₃1412.7
b₈1440.5
b₉-H₂O1509.5
b₉-NH₃1510.5
y₁₄1511.8
1101.5
400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
300
Intensity
400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
AMP
MH₂²⁺-adenine1216.3
MH₂²⁺-adenine-H₂O1207.3
MH₂²⁺-AMP-H₂O
MH₂²⁺-AMP
1159.6
MH₂²⁺-adenosine-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_01_w01048
3794
D5Ertd606e; Sept11; D5Ertd606e; Sept11; D5Ertd606e; Sept11; Q8C1B7-1; Q8C1B7; Q8C1B7-2; Q8C1B7; Q8C1B7-3; Q8C1B7
76.93
ITMS; CID; 1
ac
_ A
y₁₁²⁺
b₂
V
y₁₀²⁺
b₃
A
y₉
b₄
V
y₈²⁺
b₅
G
y₇²⁺
b₆²⁺
adpr
R
y₆
b₇
P
y₅-NH₃
S N E
y₂
E L R _
b₂213.1
b₃284.2
y₂
288.2
AMP348.1
b₄383.2
y₇²⁺422.7
b₅
440.3
b₆²⁺569.2
b₇²⁺617.7
y₅-NH₃643.3
y₆747.4
y₈²⁺771.3
y₉²⁺799.8
y₁₀²⁺849.3
y₁₁²⁺884.9
b₇1234.5
y₉-AMP1251.5
923.4
914.5
MH₂²⁺-adenine
866.5
817.3
590.4
y₁₁3⁺623.4
y₁₂3⁺
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400
Intensity
m/z (zoom)
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f2_01_w01047
7323
Serpina3g; Spi2A; Serpina3f; BC049975; Serpina3f; Q5I2A0; Q3U0Y1; Q4V9W0; B2RT49; Q3UDB3; Q3UE77; Q3UTZ5; Q80X76
105.39
ITMS; CID; 1
ac
_
y₂₁²⁺
A G
y₁₉²⁺
b₃
V
y₁₈²⁺
b₄
S
y₁₇²⁺
P
y₁₆²⁺
A
y₁₅²⁺
b₇
V
y₁₄²⁺
b₈
F
y₁₃²⁺
b₉
G
y₁₂²⁺
C P D V T
y₇²⁺
L G
adpr
R N T A V R _
b₃270.1
b₄-H₂O339.2
AMP348.1
b₄
357.2
ADP
428.0
b₇624.3
y₇²⁺
657.8
b₈771.4
b₉828.4
y₁₂²⁺
920.4
y₁₃²⁺1000.4
y₁₄²⁺1028.9
y₁₅²⁺1102.5
y₁₆²⁺1152.0
y₁₇²⁺1187.5
y₁₈²⁺1236.0
y₆-NH₃1240.4
y₁₉²⁺1279.5
y₂₁²⁺1357.6
MH₂²⁺-adenine1346.3
1337.7
1289.59
1241.0MH₂²⁺-AMP
824.5
y₁₈3⁺
853.4
y₁₉3⁺
400 600 800 1000 1200 1400 1600 1800 2000
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
Intensity
400 600 800 1000 1200 1400 1600 1800 2000
m/z (zoom)
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_01_w01048
8950
Serpina3g; Spi2A; Q5I2A0; Q3U0Y1; Q4V9W0
78.49
ITMS; CID; 1
_
adpr
R L C F G
y₇
b₆²⁺
D P
y₅
b₈²⁺
L
y₄
b₉²⁺
C
b₁₀²⁺
L
y₂
b₁₁
I
b₁₂
G Q _
y₂204.1
AMP348.1
ADP428.0
y₄430.3
y₅590.3
b₆²⁺645.7
b₈²⁺750.8
y₇
800.4
b₉²⁺830.8
b₁₀²⁺887.3
b₁₁²⁺943.9
b₁₂²⁺972.4
b₁₁-AMP1539.7
b₁₂-AMP1596.7
978.1
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine
968.9871.7MH₂²⁺-AMP
1402.5
b₁₂-ADP ribose1751.29
b₁₁-adenine
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
020
4060
80100
120
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
o05313
4607
Serpinb1; Serpinb1a; Serpinb1c; Q9D154; Q8BK60; Q5SV42
101.42
ITMS; CID; 1
_
y₁₅
A D
y₁₃
b₃
L
y₁₂
b₄
S G
y₁₀²⁺
b₆
M
y₉²⁺
b₇-H₂O
S G S
adpr
R D
b₁₂
L
y₃
b₁₃
F
y₂
I S K _
y₂234.1
adenosine - H2O250.1
b₃
300.2
y₃347.2
AMP348.1
b₄387.2
ADP428.0 b₆-H₂O
557.2
b₆
575.2
b₇-H₂O644.3
y₉²⁺782.3
y₁₀²⁺825.8
y₁₂²⁺919.9
b₁₃²⁺939.8
y₁₃²⁺963.4
b₁₂-AMP
1384.5
y₁₂-AMP
1491.7
b₁₃-AMP1531.6
y₁₃-AMP1578.7
y₁₅-AMP1806.8
y₁₂1838.7
y₁₃1925.7
1045.5
1036.2
979.3
988.3
930.4
730.1
724.2
y₁₄3⁺680.3
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0500
10001500
2000
Intensity
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O
MH₂²⁺-adenosine-2H₂O
MH₂²⁺-AMP-H₂O
MH₃3⁺-3H₂O
MH₃3⁺-2H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f8_02_w01369
3934
At3; Serpinc1; AT3; mCG_9405; P32261; Q543J5
78.93
ITMS; CID; 1
_ S
y₈²⁺
b₂
L
y₇
b₃
N P N
b₆
adpr
R
y₃
V T F K _
a₂
173.1b₂
201.1
adenosine - H2O250.1
b₃-NH₃298.1
b₃315.2 AMP
348.1y₃
395.2
ADP428.0
b₆²⁺612.2
y₇²⁺701.8
y₈²⁺758.8
b₆-AMP876.4
y₇-AMP1055.5
782.5
773.2
685.4y₈3⁺
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0500
10001500
2000
Intensity
200 300 400 500 600 700 800 900 1000 1100
m/z (zoom)
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
MH₂²⁺-AMP
506.2
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_02_w01364
7524
Slc38a3; Sn1; Snat3; Q9DCP2
101.9
ITMS; CID; 1
ac
_ M E
y₁₄²⁺
b₃
I
y₁₃²⁺
P
y₁₂
b₅
adpr
R Q T
y₉
b₈²⁺
E
y₈²⁺
M
y₇
b₁₀
V
y₆
b₁₁²⁺
E
y₅
b₁₂
L
y₄
b₁₃
V P N G K _
AMP348.1
b₃-H₂O398.2
y₄415.2
b₃416.2
y₈²⁺428.3
y₅-NH₃497.3
y₅514.3
y₆627.4
y₁₂²⁺672.8
y₇756.4
b₈²⁺784.8
b₁₀²⁺899.8 b₁₁²⁺
964.4
y₉986.5
b₁₂²⁺1020.9
y₁₃²⁺1021.4
y₁₄²⁺1069.9
b₅-H₂O1192.4
b₅1210.4
y₁₂
1344.7
1451.6
1693.7
1792.8
MH₂²⁺-adenine-H₂O
MH₂²⁺-AMP
1201.0
1104.6
1095.3MH₂²⁺-AMP-H₂O
1153.1
MH₂²⁺-adenosine-H₂O
b₁₀-AMP
b₁₂-AMP
b₁₃-AMP
400 600 800 1000 1200 1400 1600 1800 2000
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
Intensity
400 600 800 1000 1200 1400 1600 1800 2000
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f2_02_w01363
7446
Slc38a3; Sn1; Snat3; Q9DCP2
95.63
ITMS; CID; 1
ac
_ M
y₁₅²⁺
E
y₁₄²⁺
b₃
I
y₁₃²⁺
P
ri
R Q T
b₈
E
b₉²⁺
M
y₇
V
y₆
b₁₁²⁺
E
y₅
b₁₂²⁺
L
y₄
V P N
b₁₆²⁺
G K _
y₄-NH₃398.2
y₄415.2
b₃416.2
y₅-NH₃497.3
y₅514.3
b₈²⁺620.3
y₆627.4
b₉²⁺685.8 y₇
756.4
b₁₁²⁺799.8
b₁₂²⁺856.4
y₁₃²⁺856.9
y₁₄²⁺905.4
y₁₅²⁺962.0
b₁₆²⁺1040.0
b₈1239.5
y₁₄²⁺-NH₃897.2
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_01_w01048
4080
Snt2b1; Sntb1; Snt2b1; Sntb1; Q99L88-1; Q99L88; Q99L88-2; Q99L88
78.29
ITMS; CID; 1
ac
_ A
y₁₈²⁺
V
y₁₇²⁺
A
y₁₆²⁺
b₄
A
y₁₅²⁺
b₅
A
y₁₄²⁺
b₆
A
y₁₃²⁺
b₇
V
y₁₂²⁺
b₈
A
y₁₁²⁺
b₉
A P A G G G G
y₄
b₁₆²⁺
A
adpr
R A Q R _
AMP348.1
b₄355.2
b₅426.2
ADP428.0
b₆497.3
b₇596.3
b₁₆²⁺603.3
b₈667.4
b₉738.4
y₁₁²⁺769.8
y₁₂²⁺805.3
y₁₃²⁺840.8
y₁₄²⁺890.4
y₁₅²⁺925.9
y₁₆²⁺961.4
y₁₇²⁺996.9
y₁₈²⁺
1032.4
y₄
1071.4
1070.6MH₂²⁺-adenine
300 400 500 600 700 800 900 1000 1100 1200 1300 1400
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0500
10001500
20002500
30003500
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f4_01_w01049
2398
RP23-356J7.1-003; Snx12; mCG_2194; RP23-356J7.1-001; Snx12; Snx12; mCG_2194; RP23-356J7.1-002; Snx12; Q3V2H3; Q99M52; Q3TGS7; O70493; Q6ZWQ5
88.95
ITMS; CID; 1
ac
_
y₉²⁺
S
y₈²⁺
D
y₇²⁺
b₃
T
y₆²⁺
b₄
A
b₅
V A D T
adpr
R R _
b₃-H₂O328.1
b₃346.1
AMP348.1
b₄-H₂O399.2
b₄417.2
ADP428.0
b₅516.2
y₆²⁺629.7
y₇²⁺665.3
y₈²⁺715.8
y₉²⁺773.3
761.2
752.4
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
704.1
MH₂²⁺-adenosine-2H₂O
MH₂²⁺-AMP664.5
y₅²⁺
547.0
MH₂3⁺-2H₂O
509.9
y₉²⁺-H2Oy₉3⁺-H2O
764.1
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
12001400
Intensity
250 300 350 400 450 500 550 600 650 700 750 800 850
m/z (zoom)
580.2
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f8_02_w01369
10191
RP23-356J7.1-003; Snx12; mCG_2194; RP23-356J7.1-001; Snx12; Snx12; mCG_2194; RP23-356J7.1-002; Snx12; Q3V2H3; Q99M52; Q3TGS7; O70493; Q6ZWQ5
46.79
ITMS; CID; 1
_ L N S K P
b₆-NH₃
Q D L
y₂₆²⁺
T
b₁₀
D
y₂₄²⁺
b₁₁
A
y₂₃²⁺
b₁₂
Y
b₁₃
G
y₂₁²⁺
P P S
y₁₈²⁺
N F L
y₁₅
E
y₁₄²⁺
I
y₁₃
D
y₁₂²⁺
I
y₁₁²⁺
F
y₁₀²⁺
N
y₉
P Q T V G
b₃₁²⁺
V G
adpr
R A R _
y₂₂²⁺
ADP
428.0
b₆-NH₃651.3
b₁₂²⁺673.8
b₁₃²⁺702.3
y₉²⁺742.8
y₁₀²⁺791.3
y₁₁²⁺848.4
y₁₂²⁺921.9
y₁₃²⁺978.4
1009.5
y₁₄²⁺1035.9
b₁₀1112.6
b₁₁
1183.6
y₁₈²⁺1287.1
b₁₂1346.7
b₁₃1403.7
y₂₁²⁺1436.1
1484.6
y₂₃²⁺1513.2
y₂₄²⁺1594.7
b₃₁²⁺1686.3
y₂₆²⁺1687.7
y₁₅-AMP1836.9 y₁₃
1955.9
1374.7
1342.3
1278.0y₁₈²⁺-H₂O
1503.8
1585.4
y₂₃²⁺-H₂O
y₂₄²⁺-H₂O
990.2
y₂₂3⁺
y₂₂²⁺
y₂₃3⁺
1063.5
y₂₄3⁺
400 600 800 1000 1200 1400 1600 1800 2000
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
300
Intensity
400 600 800 1000 1200 1400 1600 1800 2000
m/z (zoom)
MH₃3⁺-adenosine-H₂O
MH₃3⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f4_02_w01365
8907
Snx2; Q9CWK8; Q3U5L3; Q91VZ1
61.52
ITMS; CID; 1
_ E L I
y₂₄²⁺
L
y₂₃²⁺
b₅
S
y₂₂²⁺
S
y₂₁²⁺
b₇
E P
y₁₉²⁺
b₉-H₂O
S P A
y₁₆²⁺
b₁₂
V
y₁₅²⁺
b₁₃
T
b₁₄
P
y₁₃²⁺
V
y₁₂²⁺
T P T T L
y₇²⁺
I A P
adpr
R I E S K _
ADP
428.0
b₅556.3
y₇²⁺671.3
b₇-H₂O754.4
b₇772.4
y₁₂²⁺933.9
b₉-H₂O938.5
y₁₃²⁺984.4
y₁₅²⁺1082.5
y₁₆²⁺1133.0
b₁₂-H₂O1205.6
b₁₂1223.7
y₁₉²⁺1266.6
b₁₃1324.7
y₂₁²⁺1358.7
b₁₄1421.8
y₂₂²⁺1423.2
y₂₃²⁺1466.7
y₂₄²⁺1510.2
1677.2MH₂²⁺-adenine
1619.6MH₂²⁺-adenosine-H₂O
1610.8
MH₂²⁺-adenosine-2H₂O
1570.6
MH₂²⁺-AMP-H₂O
MH₂²⁺-AMP
1561.8
1350.1
y₂₁²⁺-NH₃
400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 2000
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400
Intensity
400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 2000
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
10728
mCG_121767; Snx3; Q78ZM0; Q9CSC2; Q9CU14
66.32
ITMS; CID; 1
_ A F L
adpr
R
b₅
Q L P
b₈²⁺
F
adpr
R G D
y₁₁²⁺
D G
y₉
b₁₄²⁺
I
y₈
b₁₅²⁺
F D
y₆
b₁₇²⁺
D
y₅
N
y₄
F
y₃
I
y₂
E E R _
y₂304.2
AMP348.1
ADP428.0
y₃433.2 y₄
546.3
y₉²⁺592.8
y₁₁²⁺
677.8173
y₅693.4 b₈²⁺
757.8
y₆807.4
y₈1037.5
b₅1157.4
y₉1184.5
b₁₄²⁺1335.0
y₁₁-NH₃1337.6
b₁₅²⁺1408.5
b₁₇²⁺1523.5
1240.0
MH₂3⁺-adenine
1234.0MH₂3⁺-adenine-H₂O
1201.7
MH₂3⁺-adenosine-H₂O
MH₂3⁺-AMP1169.2
890.6
b₁₄3⁺
939.3
b₁₅3⁺
1054.0
b₁₈3⁺
862.0
1103.4
b₁₉3⁺
400 600 800 1000 1200 1400 1600 1800 2000
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200
Intensity
400 600 800 1000 1200 1400 1600 1800 2000
m/z (zoom)
y₁₇3⁺
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_02_w01364
2075
mCG_121767; Snx3; Snx3; Q78ZM0; Q9CSC2; Q9CU14; O70492
96.25
ITMS; CID; 1
ac
_
y₈²⁺
A
y₇²⁺
b₂
E
y₆
b₃
T
b₄
V A D T
adpr
R R _
y₅²⁺
b₂243.1
adenosine - H2O250.1
b₃-H₂O326.1
b₃344.1
AMP348.1 b₄-H₂O
425.2
ADP428.0
b₄443.2
y₆²⁺629.7
y₇²⁺
680.3
y₈²⁺744.8
y₆-AMP911.4
733.9
724.9
715.7
627.7
619.0
580.3
y₅²⁺
200 300 400 500 600 700 800 900 1000 1100 1200
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0500
10001500
20002500
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
MH₂²⁺-AMP-H₂O
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f9_02_w01370
10105
mCG_121767; Snx3; Q78ZM0; Q9CSC2; Q9CU14
86.48
ITMS; CID; 1
_ A F L
adpr
R Q
y₁₇²⁺
b₆
L P F R G
y₁₂
D D G
y₉²⁺
b₁₄²⁺
I
y₈²⁺
b₁₅²⁺
F
y₇
b₁₆²⁺
D
y₆-NH₃
b₁₇²⁺
D
y₅
N
y₄
b₁₉²⁺
F
y₃
I
y₂
E E R _
y₂-NH₃287.1
y₂304.2
AMP
348.1
ADP428.0
y₃433.2
y₈²⁺519.2
y₄546.3
y₉²⁺592.8
b₆²⁺635.8
y₅693.4
y₆-NH₃790.4
y₇922.4
b₆-AMP923.4 y₁₇²⁺
1021.5
b₁₄²⁺1064.5
b₁₅²⁺1138.0
b₁₆²⁺1195.5
b₁₇²⁺1253.0
b₁₉²⁺
1383.6
y₁₂1469.7
988.4MH₂²⁺-AMP
710.1b₁₄3⁺
759.2
b₁₅3⁺
797.4
b₁₆3⁺
874.0
b₁₈3⁺960.6
b₂₀3⁺
1003.5b₂₁3⁺
y₉²⁺-NH₃693.4
891.0
b₁₄²⁺-AMP
400 600 800 1000 1200 1400 1600 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
800
Intensity
400 600 800 1000 1200 1400 1600 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f3_01_w01048
6486
Kiaa0120; Tagln2; Q9WVA4
72.62
ITMS; CID; 1
_ G A S
y₁₃²⁺
Q
y₁₂²⁺
b₅
A
y₁₁²⁺
b₆
G
y₁₀²⁺
b₇
M
y₉²⁺
T G
y₇²⁺
b₁₀
Y
y₆²⁺
G
y₅
b₁₂
M
b₁₃-H₂O
P
adpr
R Q
b₁₆²⁺
I I _
AMP348.1
b₅-H₂O397.2
b₅415.2
b₆-H₂O454.2
b₆472.2
b₇-H₂O585.2
b₇603.3
y₆²⁺649.8
y₇²⁺678.3
y₉²⁺788.3
y₁₀²⁺838.8
y₁₁²⁺904.4
b₁₀924.4
y₁₂²⁺932.9
y₁₃²⁺968.4
b₁₆²⁺1074.4
b₁₂1112.4
y₅
1167.5
b₁₃-H₂O1191.5
1072.6
1063.5
966.4
1063.5
584.4
y₅²⁺
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liverf7_02_w01368
8230
IPI00944697
70.49
ITMS; CID; 1
_ N
y₉²⁺
b₂
L
y₈
b₃
I
y₇²⁺
b₄-NH₃
F F C
b₇
Q M G
adpr
R R _
a₂200.1
b₂
228.1
adenosine - H2O250.1
b₃341.2 AMP
348.1
ADP428.0
b₄-NH₃
471.3
y₇²⁺748.3
y₈²⁺821.8
y₉²⁺
878.3
b₇923.4
y₈-AMP1295.5
915.4
MH₂²⁺-adenine-H₂O
818.23
MH₂²⁺-adenosine-H₂O867.6
585.8
y₉3⁺
754.2
y₈²⁺-adenine
200 300 400 500 600 700 800 900 1000 1100 1200 1300
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300
m/z (zoom)
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f7_01_w01052
3128
RP23-195K8.11-001; Tln1; mKIAA1027; Tln; Tln1; A2AIM8; Q0V930; Q3TBC3; Q3UHS6; Q80TM2; Q8C9Z8; P26039
77.06
ITMS; CID; 1
_ A
y₉²⁺
I
y₈²⁺
b₃
A
y₇²⁺
V
y₆
b₅
N
b₆-NH₃
P
adpr
R
y₃
b₈²⁺
D
y₂
P P R _
adenosine - H2O250.1
b₃256.2
y₂
272.1717
AMP348.1
y₃369.2
b₅469.3
b₆-NH₃549.3
y₆²⁺639.7
b₈²⁺689.8
y₇²⁺696.8
y₈²⁺746.3
y₉²⁺781.8
y₆-AMP931.4
806.5
797.6
788.7
749.3MH₂²⁺-adenosine-H₂O
700.5
1143.4
y₆-adenine
521.7y₉3⁺
200 300 400 500 600 700 800 900 1000 1100 1200
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0500
10001500
2000
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liverf7_02_w01368
10102
Trp32; Txnl; Txnl1; Txnl1; Q8CDN6; Q3U8R9; Q3UBF4; Q3UNH3
53.26
ITMS; CID; 1
_ S M D F E E A E
y₂₃²⁺
b₉
adpr
R S
y₂₁²⁺
b₁₁
E P
y₁₉²⁺
T
y₁₈²⁺
Q
y₁₇²⁺
A
y₁₆²⁺
L
y₁₅²⁺
E
y₁₄²⁺
L
y₁₃
T
y₁₂²⁺
E D
b₂₂²⁺
D
b₂₃²⁺
I K E
y₆
D G
y₄
I
y₃
V P L R _
AMP348.1
y₃385.3
y₄484.3
y₆654.4
y₁₂²⁺685.4
y₁₄²⁺800.4
y₁₅²⁺
857.0
y₁₆²⁺921.5
b₁₁²⁺926.8
y₁₇²⁺978.0
y₁₈²⁺1013.5
y₁₉²⁺
1077.6
y₂₁²⁺1176.6
y₂₃²⁺1284.7
y₁₃1498.8
b₁₁-AMP1505.5
b₂₂²⁺1533.1
b₂₃²⁺1589.6
b₉1636.5
1357.1
1351.1MH₂²⁺-adenine
1319.2
1286.4
1280.3
1274.7
785.1
y₂₁3⁺
918.0b₁₁²⁺-H₂O
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
800
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (zoom)
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenosine-H₂O
MH₂²⁺-AMP
MH₂²⁺-AMP-H₂O
MH₂²⁺-AMP-2H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_02_w01367
8877
Tuba1b; Tuba2; Tuba1c; Tuba6; Tuba4; Tuba4a; P05213; O89052; Q99KA2; P68368
78.32
ITMS; CID; 1
_
adpr
R
y₁₂²⁺
S I
y₁₀
Q
y₉
F
y₈
b₆²⁺
V
y₇
b₇
D
y₆
W
y₅
b₉
C P T G F K _
b₅²⁺b₄²⁺
AMP348.1
ADP428.0
y₇²⁺448.2
y₅549.3
y₁₀²⁺628.8
b₆²⁺636.7
b₇²⁺694.3
y₆709.3 y₁₂²⁺
749.4
b₉²⁺867.3
y₇895.4
y₈1010.4
y₉1109.5
b₆-H₂O1254.5
y₁₀1256.6
b₉-AMP1386.5
b₇
1387.5
1074.0
1064.7
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O1016.3
MH₂²⁺-adenine-2H₂O
MH₂²⁺-adenosine-H₂O
968.0MH₂²⁺-AMP
685.4b₇²⁺-H₂O
587.2b₅²⁺
578.5b₅²⁺-NH3
513.7
b₄²⁺
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
600
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
8743
Tuba1c; Tuba6; Tuba8; P68373; Q3TIZ0; Q52L87; Q9JJZ2
79.47
ITMS; CID; 1
_
adpr
R T I
y₁₀
Q
b₅
F
y₈
b₆
V
y₇
b₇
D
y₆
W
y₅
b₉²⁺
C P
y₃
T
y₂-NH₃
G F K _
y₂-NH₃277.2
y₃-NH₃334.2
AMP348.1
y₃
351.2
ADP428.0
y₅549.3
643.8
b₇²⁺701.3
y₆709.3
b₉²⁺874.3
y₇895.4
y₈1010.4
b₅1187.4
y₁₀1256.6 b₆
1286.5 b₇1401.5
635.0b₆²⁺-H₂O
594.3
b₅²⁺
520.8b₄²⁺
512.4
b₄²⁺-NH3
b₆²⁺
717.5b₁₃3⁺
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
Intensity
m/z (zoom)
1081.0
1071.7
MH₂²⁺-adenine
MH₂²⁺-adenine-2H₂O1062.9
MH₂²⁺-adenine-H₂O
966.0
974.8MH₂²⁺-AMP
MH₂²⁺-AMP-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_02_w01367
9685
Tubb2; Tubb2a; Tubb2b; mCG_1395; Q7TMM9; Q99J49; Q9CWF2; B2RSN3; Q8BK89
45.61
ITMS; CID; 1
_ G S Q Q Y
y₁₅
adpr
R
y₁₄
A
b₈
L
y₁₂
b₉²⁺
T
y₁₁
b₁₀
V P
b₁₂
E L T Q
y₅
Q
y₄
M
y₃
F D S K _
AMP348.1
y₃349.2
ADP
428.0
y₄496.2
y₅627.3
y₁₁²⁺662.3 y₁₂²⁺
711.9b₉²⁺773.8
b₁₀²⁺823.3
b₈-AMP
1098.5
b₁₀-AMP1298.6
y₁₁1323.625
y₁₂1422.7 b₁₂-AMP
1524.7
b₁₀-H₂O1627.6
y₁₄
1636.8
y₁₅
1707.9
1408.2
1417.3
1399.3
1360.6
MH₂²⁺-adenosine-H₂O
1311.2
MH₂²⁺-AMP
1302.2
MH₂²⁺-AMP-H₂O
1510.5b₁₀-adenine
b₁₀-adenine-H₂O1492.4
814.1b₁₀²⁺-H₂O
805.2
b₁₀²⁺-2H₂O
865.14
y7-H₂O
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
600
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f5_01_w01050
8893
Tubb4; Tubb3; Tubb2c; Tubb2c1; Q9D6F9; Q9ERD7; Q9CRT0; P68372; Q9CVR0; Q9DCR1
45.61
ITMS; CID; 1
_ G S Q Q
y₁₆²⁺
Y
adpr
R
y₁₄-NH₃
A
y₁₃
L
y₁₂²⁺
b₉²⁺
T
y₁₁
b₁₀
V P
b₁₂²⁺
E
y₈
L T Q Q
y₄
b₁₇²⁺
M
y₃
b₁₈²⁺
F D A K _
y₃333.2
AMP348.1
y₄480.2
y₁₁²⁺654.3
y₁₂²⁺703.9
b₉²⁺773.8
b₁₀²⁺823.3
b₁₂²⁺936.4
y₈968.5
y₁₆²⁺1195.0
b₁₇²⁺1237.0
y₁₁1307.6
b₁₈²⁺1310.6
y₁₃1507.7
y₁₄-NH₃1603.8
b₁₀1645.6
1409.2
MH₂²⁺-adenine
1400.0
MH₂²⁺-adenine-H₂O1303.3
MH₂²⁺-AMP-H₂O
MH₂²⁺-AMP
1294.4
814.4
b₁₀²⁺-H₂O
765.0b₉²⁺-H₂O
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400500
600
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f7_01_w01052
7393
Tubb4; Tubb3; Tubb2c; Tubb2c1; Tubb2; Tubb2a; Tubb5; Tubb2; Tubb2a; Tubb2b; mCG_1395; Q9D6F9; Q9ERD7; Q9CRT0; P68372; Q9CVR0; Q9DCR1; Q62363; P99024; Q80ZV2; Q7TMM9; Q99J49; Q9CWF2; B2RSN3; Q8BK89
78.94
ITMS; CID; 1
_
y₁₀²⁺
I
y₉²⁺
b₂
S
y₈²⁺
b₃
E
y₇²⁺
Q
y₆²⁺
F T A
y₃
b₈²⁺
M
y₂-NH₃
b₉²⁺
F
adpr
R R _
b₂201.1
adenosine - H2O250.1
b₃-H₂O312.2
b₃330.2
AMP348.1 ADP
428.0
b₈²⁺454.7
b₉²⁺528.2
y₆²⁺661.7
y₃-AMP672.3 y₇²⁺
735.3
y₈²⁺799.3
y₂-NH₃855.3
y₉²⁺863.8
y₁₀²⁺907.3
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0100
200300
400
Intensity
200 300 400 500 600 700 800 900 1000
m/z (zoom)
887.3
878.5
839.5
790.6
781.6
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
MH₂²⁺-adenosine-H₂O
MH₂²⁺-AMP
MH₂²⁺-AMP-H₂O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_01_w01051
9745
Tubb5; P99024; Q80ZV2
61.1
ITMS; CID; 1
_ G S Q Q
y₁₆²⁺
Y
adpr
R A
y₁₃
L
y₁₂
b₉²⁺
T
y₁₁
b₁₀
V P
y₉
E L
b₁₄²⁺
T
y₆
Q
y₅
Q
y₄
b₁₇²⁺
V F D A K _
AMP348.1
ADP428.0
y₄480.2 y₅
579.3
y₁₁²⁺638.3
y₁₂²⁺687.9
y₆707.4
b₉²⁺773.8
b₁₀²⁺823.3
b₁₄²⁺1043.4 y₉
1049.6
y₁₆²⁺1179.0
b₁₇²⁺1221.0
y₁₁1275.7
y₁₂1374.7
y₁₃1475.8
b₉-H₂O1528.6
b₁₀1645.6
1393.3MH₂²⁺-adenine
1384.0
MH₂²⁺-adenosine-H₂O
MH₂²⁺-adenine-H₂O
1190.5
MH₃3⁺-2H₂O
MH₃3⁺-3H₂O
814.3
805.3
1169.6
629.5
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
050
100150
200250
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900
m/z (zoom)
1336.2
1286.9MH₂²⁺-AMP
MH₂²⁺-AMP-H₂O1277.9
MH₂²⁺-ADP ribose
962.1
956.3
b₁₀²⁺-H₂O
b₁₀²⁺-2H₂O
y₁₆²⁺-H2O
y₁₁²⁺-H2O
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
o05368
1778
Ubch10; Ube2c; mCG_17518; RP23-370H21.6-001; RP23-370H21.6-002; Ube2c; Q9D1C1; A2A4Z0; Q3UWQ1; A2A4Z1
87.43
ITMS; CID; 1
ac
_
y₁₅²⁺
A S Q
y₁₂²⁺
N
y₁₁²⁺
adpr
R
y₁₀
b₆
D P
y₈
A
y₇
A
y₆
b₁₀
A
y₅
S
y₄
V
y₃
A
y₂
A V R _
y₂274.2
y₃345.2
AMP348.1
y₄416.3
ADP428.0
y₁₀²⁺456.8
y₁₁²⁺514.3
y₅
515.3
y₆602.4
b₆²⁺628.2
y₇673.4
y₈744.4
b₁₀²⁺783.3
y₁₂²⁺862.9
y₁₀912.5
y₁₅²⁺1027.4
b₁₀-AMP1218.5
b₆1255.4
1016.3
1007.4
998.55
959.4
MH₂²⁺-adenosine-H₂O
MH₂²⁺-adenosine-2H₂O950.2
910.5
685.2
711.0
705.3
MH₃3⁺-2H₂O
MH₃3⁺-3H₂O
y₁₅3⁺
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0200
400600
8001000
12001400
Intensity
1900
m/z (zoom)
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-2H₂O
MH₂²⁺-AMP
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_02_w01367
5765
Ufm1; P61961
94.19
ITMS; CID; 1
_
y₁₁²⁺
I
y₁₀²⁺
a₂
T
y₉²⁺
L
y₈
b₄
T S
y₆
b₆
D P
adpr
R
y₃
L
y₂
P Y K _
a₂187.1
y₂
310.2AMP348.1
y₃-NH₃390.2
y₃407.2
ADP428.0
b₄429.3
b₆-H₂O613.3
b₆631.3 y₆²⁺
657.8
y₈²⁺758.8
y₉²⁺809.3
y₁₀²⁺865.9
y₁₁²⁺916.4
y₆-AMP967.5
y₈-AMP1169.5
y₆
1314.5
905.5
896.7
MH₂²⁺-adenine
MH₂²⁺-adenine-H₂O
799.6
MH₂²⁺-AMP
702.4
MH₂²⁺-ADPribose
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
01000
20003000
40005000
60007000
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f2_02_w01363
7873
Uroc1; Uroc1; Q8VC12; Q3UEL5
61.13
ITMS; CID; 1
ac
_ S S
y₁₆²⁺
b₃
L
y₁₅²⁺
Q
y₁₄²⁺
b₅
E
y₁₃²⁺
b₆
L C
y₁₁²⁺
b₈-NH₃
S
b₉-H₂O
G
y₉²⁺
L P
y₇²⁺
L
y₆
b₁₃²⁺
adpr
R
y₅
P
y₄
b₁₅²⁺
L P E N R _
b₃
330.2
AMP348.1
ADP428.0
y₄515.3
b₅587.3
y₅
628.3 b₆700.4
y₇²⁺711.8
y₆725.4
y₉²⁺816.9
y₁₁²⁺901.9
b₈-NH₃930.4
b₉-H₂O986.4
b₉-NH₃987.4
b₁₃²⁺1012.9
y₁₃²⁺1025.4
y₁₄²⁺1082.0
b₁₅²⁺1118.0
y₁₅²⁺1146.5
y₁₆²⁺1210.5
1307.7
MH₂²⁺-adenine
MH₂²⁺-adenosine-H₂O
1250.6
1201.4
MH₂²⁺-AMP
1104.7MH₂²⁺-ADP ribose
MH₂²⁺-adenine-H₂O
MH₂²⁺-adenine-H₂O
1289.8
1298.4
400 600 800 1000 1200 1400 1600 1800 2000
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
020
4060
80
Intensity
300 400 500 600 700 800 900 1000 1100 1200 1300
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liverf7_02_w01368
7142
BC025105; Vsig4; Q80WA3
96.01
ITMS; CID; 1
_ I
y₁₀
b₂
Q
y₉²⁺
b₃
C
y₈²⁺
b₄
I
b₅-NH₃
Y
y₆²⁺
b₆
D P L
y₃
b₉²⁺
adpr
R G Y R _
b₂-NH₃225.1
b₂242.1
AMP348.1
b₃-NH₃385.1
y₃395.2
b₃
402.2
ADP428.0 b₄
515.3
y₆²⁺651.8
b₅-NH₃661.3
y₈²⁺790.8
b₆793.4
y₉²⁺847.3
b₉²⁺850.8
y₁₀²⁺927.4
y₁₀-AMP1506.6
980.5
971.5
MH₂²⁺-adenine-H₂O
MH₂²⁺-AMP874.3
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
0500
10001500
2000
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600
m/z (zoom)
MH₂²⁺-adenine
Nature Methods: doi:10.1038/nmeth.2106
Source:
Scannumber:
Protein:
Peptide Score:
Method:
liver_f6_02_w01367
7032
BC025105; Vsig4; Q80WA3
58.68
ITMS; CID; 1
_
y₁₁²⁺
I
y₁₀²⁺
b₂
Q
y₉²⁺
b₃
C
y₈²⁺
I
y₇²⁺
Y
y₆
b₆
D P L
y₃
ri
R G Y R _
b₂-NH₃225.1
b₂242.1
y₃395.2
b₃402.2
y₆²⁺487.2
y₇²⁺544.7
y₈²⁺626.3
y₉²⁺682.8
y₁₀²⁺762.8
b₆793.4
y₁₁²⁺826.9
y₆973.5
200 300 400 500 600 700 800 900 1000 1100 1200 1300
m/z (full)
020
4060
8010
012
0
Rel
ativ
e Ab
unda
nce
01000
20003000
40005000
Intensity
200 300 400 500 600 700 800 900 1000 1100 1200 1300
m/z (zoom)
Nature Methods: doi:10.1038/nmeth.2106