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  • Supplementary Figure 2 - California Institute of Technology · Supplementary Figure 2: Annotated CAD MS^4 spectra and ETD MS/MS spectra of all sequenced peptides: Peptide Protein
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Supplementary Figure 2: Annotated CAD MS^4 spectra and ETD MS/MS spectra of all sequenced peptides: Peptide Protein Source MS Mode 1 QVAHSAK OGA Neuron Culture MS^4 2 KEELPQSSSAG Nucleoporin 153 Neuron Culture MS^4 3 AQPPSSAASR eIF4G Neuron Culture MS^4 4 AQPPSSAASR eIF4G Synthetic Peptide MS/MS 5 AGYSQGATQYTQAQQAR zinc finger RNA-binding protein Neuron Culture ETD MS/MS 6 SISQSISGQK p66b Neuron Culture ETD MS/MS 7 FTPTTLPTSQNSIHPVR BHC80 Neuron Culture ETD MS/MS 8 INPSVNPGISPAHGVTR SRC-1 Neuron Culture ETD MS/MS 9 KQAAFGGSGPR RecQ protein-like 4 Neuron Culture ETD MS/MS 10 AQPPSSAASR eIF4G Brain Lysate MS^4 11 SSSADFGSFSTSQSHQTASTV SK Hrb Brain Lysate MS^4 12 ALVETSYPSQTTR EGR-1 Brain Lysate MS^4 13 VPTTVEDR GRASP55 Brain Lysate MS^4 14 SDQQPPVTR inositol polyphosphate-4- phosphatase Brain Lysate MS^4

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  • Supplementary Figure 2: Annotated CAD MS^4 spectra and ETD MS/MS spectra of all sequenced peptides:

    Peptide Protein Source MS Mode

    1 QVAHSAK OGA

    Neuron Culture

    MS^4

    2 KEELPQSSSAG Nucleoporin 153

    Neuron Culture

    MS^4

    3 AQPPSSAASR eIF4G

    Neuron Culture

    MS^4

    4 AQPPSSAASR eIF4G Synthetic Peptide MS/MS

    5 AGYSQGATQYTQAQQAR

    zinc finger RNA-binding protein

    Neuron Culture

    ETD MS/MS

    6 SISQSISGQK p66b

    Neuron Culture

    ETD MS/MS

    7 FTPTTLPTSQNSIHPVR BHC80

    Neuron Culture

    ETD MS/MS

    8

    INPSVNPGISPAHGVTR

    SRC-1

    Neuron Culture

    ETD MS/MS

    9 KQAAFGGSGPR RecQ protein-like 4

    Neuron Culture

    ETD MS/MS

    10 AQPPSSAASR eIF4G Brain Lysate MS^4

    11 SSSADFGSFSTSQSHQTASTV

    SK

    Hrb

    Brain Lysate MS^4

    12 ALVETSYPSQTTR EGR-1

    Brain Lysate MS^4

    13 VPTTVEDR GRASP55

    Brain Lysate MS^4

    14 SDQQPPVTR

    inositol polyphosphate-4-phosphatase

    Brain Lysate MS^4

  • 15

    SPSTSSTIHSYGQPPTTANYS

    QTEELPHAPSGPAGSGR

    bassoon

    Brain Lysate MS^4

    16 ASGAGGPPRPELPAGGAR bassoon

    Brain Lysate MS^4

    17 QHSQTPSTLNPTMPASER SynGAP

    Brain Lysate MS^4

    18 QPETYHTYTTNTPTTAR HCF

    Brain Lysate MS^4

    19 SSGDVHLPISSDVSTFTTR

    phosphatidylinositol-binding clathrin assembly protein

    Brain Lysate MS^4

    20 VADVPVSEATTVLGDVHSPA

    VEGFVGENISGEEK

    MAP2b

    Brain Lysate MS^4

    21 DVLTSTYGATAETLSTSTTT

    HVTK

    erythrocyte protein band 4.1-like 1, isoform L

    Brain Lysate MS^4

    22 SSSSTTASSSPSTIVHGAHSEP

    ADSTEVGDK

    Rab3 GDP/GTP exchange protein

    Brain Lysate MS^4

    23 INPSVNPGISPAHGVTR SRC-1

    Brain Lysate MS^4

    24 SNPVIPISSSNHSAR CCR4-NOT4

    Brain Lysate MS^4

    25 SSIVSNSSFDSVPVSLHDER PDZ-GEF

    Brain Lysate MS^4

    26 TVTPASSAK CRMP-2

    Brain Lysate MS^4

    27 AQPAQSKPQK LMP-1

    Brain Lysate MS^4

    28

    QVAHSGAK OGA

    Brain Lysate MS^4

    29 IGGDLTAAVTK Ythdf3

    Brain Lysate MS^4

    30 AAAATTTATTTTTSGGHPLE

    FLR

    Rad23b

    Brain Lysate MS^4

    31 VTQHFAK bassoon

    Brain Lysate MS^4

    32 ITASSSFR SH3p8

    Brain Lysate MS^4


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