supplementary data name gene id (ncbi) fvlbd1azea mays 575 + 5 cc(g/a)ccc light responsive element...

Supplementary Data Table S1. The Gene Id of FvLBD genes at NCBI .

Name Gene Id (NCBI) FvLBD1A 101300227 FvLBD1B 101306463 FvLBD2 101295442 FvLBD4A 101304547 FvLBD6 101296679 FvLBD9 105350217 FvLBD12A 101315134 FvLBD12B 105353075 FvLBD15A 101298546 FvLBD15B 101300801 FvLBD18 101291664 FvLBD19 101291959 FvLBD20 101301743 FvLBD21 101311802 FvLBD22A 105351229 FvLBD22B 101308546 FvLBD22C 101308257 FvLBD24A 101312680 FvLBD24B 101297600 FvLBD25A 101303346 FvLBD25B 101313800 FvLBD27A 101311004 FvLBD27B 101301214 FvLBD29A 101304433 FvLBD29B 101304723 FvLBD33 101315294 FvLBD36A 101303362 FvLBD36B 105350270 FvLBD38A 101307625 FvLBD38B 101313940 FvLBD39 101309502 FvLBD41 101314484 FvLBD42 101291724

Table S2. The cis-element(s) identified in the promoter regions of FvLBD genes.

Site Name Organism Position Strand Matrix score. sequence function

gene25294 5UTR Py-rich stretch

Lycopersicon esculentum 715 - 9 TTTCTTCTCT cis-acting element conferring

high transcription levels

5UTR Py-rich stretch



5UTR Py-rich stretch



AAAC-motif Spinacia oleracea 1418 + 11 CAACAAAAACCT light responsive element

ACE Petroselinum crispum 436 + 10 ACTACGTTGG cis-acting element involved in light responsiveness

ARE Zea mays 188 - 6 TGGTTT cis-acting regulatory element

essential for the anaerobic induction



ATC-motif Spinacia oleracea 1096 - 8 AGTAATCT part of a conserved DNA module involved in light responsiveness

Box 4 Petroselinum crispum 1306 - 6 ATTAAT part of a conserved DNA module involved in light responsiveness

Box I Pisum sativum 27 - 7 TTTCAAA light responsive element Box I Pisum sativum 1152 + 7 TTTCAAA light responsive element

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27LE%7E5UTR%20Py-rich%20stretch%27&StartAt=0&NbRecs=10



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27SO%7EAAAC-motif%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PC%7EACE%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ZM%7EARE%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27SO%7EATC-motif%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PC%7EBox%204%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PS%7EBox%20I%27&StartAt=0&NbRecs=10


Box I Pisum sativum 683 + 7 TTTCAAA light responsive element Box I Pisum sativum 1199 + 7 TTTCAAA light responsive element

Box-W1 Petroselinum crispum 956 + 6 TTGACC fungal elicitor responsive element


CAT-box Arabidopsis thaliana 594 + 6 GCCACT cis-acting regulatory element related to meristem expression

CGTCA-motif Hordeum vulgare 1354 - 5 CGTCA cis-acting regulatory element

involved in the MeJA-responsiveness

DRE Arabidopsis thaliana 670 + 9 TACCGACAT "cis-acting element involved in

dehydration, low-temp, salt stresses

ELI-box3 Brassica oleracea 188 + 9 AAACCAATT elicitor-responsive element ERE Dianthus caryophyllus 27 - 8 ATTTCAAA ethylene-responsive element ERE Dianthus caryophyllus 1198 + 8 ATTTCAAA ethylene-responsive element ERE Dianthus caryophyllus 1151 + 8 ATTTCAAA ethylene-responsive element

GAG-motif Spinacia oleracea 1439 - 7 AGAGATG part of a light responsive element

GARE-motif Brassica oleracea 1 + 7 TCTGTTG gibberellin-responsive element GARE-motif Brassica oleracea 639 + 7 TCTGTTG gibberellin-responsive element

GATA-motif Arabidopsis thaliana 890 - 10 AAGATAAGATT part of a light responsive element

GATA-motif Arabidopsis thaliana 945 - 7 GATAGGA part of a light responsive element

GCN4_motif Oryza sativa 257 + 7 CAAGCCA cis-regulatory element involved in endosperm expression



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PC%7EBox-W1%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7ECAT-box%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HV%7ECGTCA-motif%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EDRE%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27BO%7EELI-box3%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27DC%7EERE%27&StartAt=0&NbRecs=10



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27SO%7EGAG-motif%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27BO%7EGARE-motif%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EGATA-motif%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27OS%7EGCN4_motif%27&StartAt=0&NbRecs=10

GCN4_motif Oryza sativa 565 + 7 TGTGTCA cis-regulatory element involved in endosperm expression

GT1-motif Arabidopsis thaliana 470 - 6 GGTTAA light responsive element GT1-motif Arabidopsis thaliana 736 + 6 GGTTAA light responsive element

HSE Brassica oleracea 1050 + 9 AGAAAATTCG cis-acting element involved in heat stress responsiveness

HSE Brassica oleracea 1213 - 10 AAAAAATTTC cis-acting element involved in heat stress responsiveness

HSE Brassica oleracea 1146 + 9 AAAAAATTTC cis-acting element involved in heat stress responsiveness

I-box Solanum tuberosum 742 + 10 TATTATCTAGA part of a light responsive element

MBS Arabidopsis thaliana 1295 - 6 TAACTG MYB binding site involved in drought-inducibility

MBSI Petunia hybrida 521 + 10.5 aaaAaaC(G/C)GTTA MYB binding site involved in flavonoid biosynthetic genes

regulation

MRE Petroselinum crispum 472 + 7 AACCTAA MYB binding site involved in light responsiveness


MSA-like Catharanthus roseus 23 - 9 TCAAACGGT cis-acting element involved in cell cycle regulation

O2-site Zea mays 74 + 9 GATGACATGG cis-acting regulatory element involved in zein metabolism

regulation

O2-site Zea mays 601 - 9 GATGATGTGG cis-acting regulatory element involved in zein metabolism

regulation


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EGT1-motif%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27BO%7EHSE%27&StartAt=0&NbRecs=10



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ST%7EI-box%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EMBS%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PH%7EMBSI%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PC%7EMRE%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27CR%7EMSA-like%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ZM%7EO2-site%27&StartAt=0&NbRecs=10


O2-site Zea mays 228 - 9 GATGACATGA cis-acting regulatory element involved in zein metabolism

regulation

O2-site Zea mays 1433 - 8 GATGA(C/T)(A/G)TG(A/G)

cis-acting regulatory element involved in zein metabolism

regulation

Skn-1_motif Oryza sativa 232 + 5 GTCAT cis-acting regulatory element

required for endosperm expression

Skn-1_motif Oryza sativa 1165 - 5 GTCAT cis-acting regulatory element






Sp1 Zea mays 575 + 5 CC(G/A)CCC light responsive element Sp1 Zea mays 1038 + 5.5 CC(G/A)CCC light responsive element Sp1 Zea mays 798 + 5 CC(G/A)CCC light responsive element

TC-rich repeats Nicotiana tabacum 1047 - 9 ATTTTCTTCA cis-acting element involved in defense and stress responsiveness


TCT-motif Arabidopsis thaliana 892 + 6 TCTTAC part of a light responsive element



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27OS%7ESkn-1_motif%27&StartAt=0&NbRecs=10




http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ZM%7ESp1%27&StartAt=0&NbRecs=10



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27NT%7ETC-rich%20repeats%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7ETCT-motif%27&StartAt=0&NbRecs=10

TGA-box Glycine max 1354 + 8 TGACGTAA part of an auxin-responsive element

TGACG-motif Hordeum vulgare 1354 + 5 TGACG cis-acting regulatory element


circadian

Lycopersicon esculentum 160 + 9 CAAAGATATC cis-acting regulatory element

involved in circadian control

circadian

Lycopersicon esculentum 1313 - 6 CAANNNNATC cis-acting regulatory element


gene23226

ABRE Arabidopsis thaliana 1020 + 6 TACGTG cis-acting element involved in the abscisic acid responsiveness

ACE Petroselinum crispum 941 - 9 AAAACGTTTA cis-acting element involved in light responsiveness

ATCT-motif Zea mays 321 + 9 AATCTGATCG part of a conserved DNA module involved in light responsiveness

ATCT-motif Pisum sativum 338 - 9 AATCTAATCC part of a conserved DNA module involved in light responsiveness

ATGCAAAT motif Oryza sativa 91 + 8 ATACAAAT cis-acting regulatory element associated to the TGAGTCA

motif


motif

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27GM%7ETGA-box%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HV%7ETGACG-motif%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27LE%7Ecircadian%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EABRE%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ZM%7EATCT-motif%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PS%7EATCT-motif%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27OS%7EATGCAAAT%20motif%27&StartAt=0&NbRecs=10




CAT-box Arabidopsis thaliana 646 - 6 GCCACT cis-acting regulatory element related to meristem expression





G-Box Antirrhinum majus 1020 - 6 CACGTA cis-acting regulatory element involved in light responsiveness

G-box Daucus carota 1020 + 6 TACGTG cis-acting regulatory element involved in light responsiveness

G-box Zea mays 1110 - 6 CACGAC cis-acting regulatory element involved in light responsiveness

GAG-motif Arabidopsis thaliana 631 + 7 AGAGAGT part of a light responsive element

GAG-motif Arabidopsis thaliana 1093 - 7 AGAGAGT part of a light responsive element

GARE-motif Brassica oleracea 281 - 7 AAACAGA gibberellin-responsive element GARE-motif Brassica oleracea 1038 + 7 AAACAGA gibberellin-responsive element


GT1-motif Arabidopsis thaliana 948 - 6 GGTTAA light responsive element






http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AM%7EG-Box%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27DC%7EG-box%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ZM%7EG-box%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EGAG-motif%27&StartAt=0&NbRecs=10






GT1-motif Arabidopsis thaliana 1479 - 6 GGTTAA light responsive element GT1-motif Avena sativa 1478 - 7 GGTTAAT light responsive element



LTR Hordeum vulgare 711 - 6 CCGAAA cis-acting element involved in low-temperature responsiveness















http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AS%7EGT1-motif%27&StartAt=0&NbRecs=10



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HV%7ELTR%27&StartAt=0&NbRecs=10








TC-rich repeats Nicotiana tabacum 1163 + 9 ATTTTCTTCA cis-acting element involved in defense and stress responsiveness


TCT-motif Arabidopsis thaliana 553 + 6 TCTTAC part of a light responsive elemen





WUN-motif Brassica oleracea 833 + 9 AAATTTCCT wound-responsive element

circadian

Lycopersicon esculentum 909 + 6 CAANNNNATC cis-acting regulatory element


gene17794 Site Name Organism Position Strand Matrix

score. sequence function

ABRE Arabidopsis thaliana 781 - 7 TACGGTC cis-acting element involved in the abscisic acid responsiveness



CATT-motif Zea mays 590 + 6 GCATTC part of a light responsive element






http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27BO%7EWUN-motif%27&StartAt=0&NbRecs=10




http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ZM%7ECATT-motif%27&StartAt=0&NbRecs=10



CGTCA-motif Hordeum vulgare 1392 + 5 CGTCA cis-acting regulatory element




GCN4_motif Oryza sativa 14 - 7 CAAGCCA cis-regulatory element involved in endosperm expression





MBS Zea mays 780 - 6 CGGTCA MYB Binding Site

MBS Arabidopsis thaliana 882 - 6 CAACTG MYB binding site involved in drought-inducibility

MRE Petroselinum crispum 850 - 7 AACCTAA MYB binding site involved in light responsiveness










http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ZM%7EMBS%27&StartAt=0&NbRecs=10



O2-site Zea mays 986 - 9 GATGATATGG cis-acting regulatory element involved in zein metabolism

regulation P-box Oryza sativa 286 - 7 CCTTTTG gibberellin-responsive element









TATC-box Oryza sativa 1451 + 7 TATCCCA cis-acting element involved in gibberellin-responsiveness


TC-rich repeats Nicotiana tabacum 884 - 9 ATTCTCTAAC cis-acting element involved in defense and stress responsiveness

TCA-element Nicotiana tabacum 262 + 9 CCATCTTTTT cis-acting element involved in salicylic acid responsiveness

TCA-element Brassica oleracea 440 + 9 CAGAAAAGGA cis-acting element involved in salicylic acid responsiveness


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27OS%7EP-box%27&StartAt=0&NbRecs=10





http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27OS%7ETATC-box%27&StartAt=0&NbRecs=10



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27NT%7ETCA-element%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27BO%7ETCA-element%27&StartAt=0&NbRecs=10


TGA-box Glycine max 696 + 8 TGACGTAA part of an auxin-responsive element

TGA-element Brassica oleracea 729 - 6 AACGAC auxin-responsive element TGA-element Brassica oleracea 1495 + 6 AACGAC auxin-responsive element TGA-element Brassica oleracea 914 - 6 AACGAC auxin-responsive element



TGACG-motif Hordeum vulgare 1392 - 5 TGACG cis-acting regulatory element


chs-Unit 1 m1 Hordeum vulgare 1014 + 10 ACCTAACCCGC part of a light responsive element

circadian



gene20083 AE-box Arabidopsis thaliana 270 + 8 AGAAACAA part of a module for light

response


Box I Pisum sativum 622 - 7 TTTCAAA light responsive element

CATT-motif Zea mays 392 - 6 GCATTC part of a light responsive element

CCAAT-box Hordeum vulgare 473 - 6 CAACGG MYBHv1 binding site CCAAT-box Hordeum vulgare 1071 + 6 CAACGG MYBHv1 binding site



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27BO%7ETGA-element%27&StartAt=0&NbRecs=10





http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HV%7Echs-Unit%201%20m1%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EAE-box%27&StartAt=0&NbRecs=10




http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HV%7ECCAAT-box%27&StartAt=0&NbRecs=10




GA-motif Helianthus annuus 1353 - 8 AAAGATGA part of a light responsive element

GT1-motif Arabidopsis thaliana 453 + 6 GGTTAA light responsive element GT1-motif Arabidopsis thaliana 944 - 6 GGTTAA light responsive element GT1-motif Avena sativa 943 - 7 GGTTAAT light responsive element GT1-motif Arabidopsis thaliana 982 - 6 GGTTAA light responsive element

I-box Flaveria trinervia 631 + 10 cCATATCCAAT part of a light responsive element

I-box Glycine max 1154 - 9 GATAAGATA part of a light responsive element

MBS Arabidopsis thaliana 379 + 6 TAACTG MYB binding site involved in drought-inducibility







Sp1 Zea mays 719 + 5 CC(G/A)CCC light responsive element

TC-rich repeats Nicotiana tabacum 909 + 9 GTTTTCTTAC cis-acting element involved in defense and stress responsiveness


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HA%7EGA-motif%27&StartAt=0&NbRecs=10





http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27FT%7EI-box%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27GM%7EI-box%27&StartAt=0&NbRecs=10









TCA-element Brassica oleracea 1393 - 9 GAGAAGAATA cis-acting element involved in salicylic acid responsiveness


TCCC-motif Spinacia oleracea 835 + 7 TCTCCCT part of a light responsive element






chs-CMA1a Daucus carota 217 + 8 TTACTTAA part of a light responsive element

circadian



circadian



gene21541 ACE Petroselinum crispum 1400 + 9 GCGACGTACC cis-acting element involved in

light responsiveness




http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27SO%7ETCCC-motif%27&StartAt=0&NbRecs=10





http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27DC%7Echs-CMA1a%27&StartAt=0&NbRecs=10




ARE Zea mays 1104 + 6 TGGTTT cis-acting regulatory element




ATC-motif Spinacia oleracea 287 + 8 AGTAATCT part of a conserved DNA module involved in light responsiveness

ATCC-motif Pisum sativum 1474 - 8 CAATCCTC part of a conserved DNA module involved in light responsiveness

Box 4 Petroselinum crispum 116 + 6 ATTAAT part of a conserved DNA module involved in light responsiveness





Box I Pisum sativum 532 + 7 TTTCAAA light responsive element CCAAT-box Hordeum vulgare 1081 - 6 CAACGG MYBHv1 binding site




http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PS%7EATCC-motif%27&StartAt=0&NbRecs=10








EIRE Nicotiana tabacum 1132 + 7 TTCGACC elicitor-responsive element EIRE Nicotiana tabacum 1253 - 7 TTCGACC elicitor-responsive element

G-Box Pisum sativum 1336 - 10 CACACATGGAA cis-acting regulatory element involved in light responsiveness


Gap-box Arabidopsis thaliana 848 - 9.5 CAAATGAA(A/G)A part of a light responsive element



regulation










http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27NT%7EEIRE%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PS%7EG-Box%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EGap-box%27&StartAt=0&NbRecs=10









TCA-element Brassica oleracea 747 - 9 CAGAAAAGGA cis-acting element involved in salicylic acid responsiveness


circadian

Lycopersicon esculentum 738 - 9 CAAAGATATC cis-acting regulatory element


circadian



gene12646























ELI-box3 Brassica oleracea 370 + 9 AAACCAATT elicitor-responsive element ELI-box3 Brassica oleracea 1085 - 9 AAACCAATT elicitor-responsive element

GAG-motif Hordeum vulgare 441 + 7 GGAGATG part of a light responsive element


GC-motif Zea mays 482 - 7 GCCCCGG enhancer-like element involved in anoxic specific inducibility


I-box Arabidopsis thaliana 857 + 9 acGATAATC part of a light responsive element

I-box Larix laricina 1186 + 9 GTATAAGGCC part of a light responsive element

MBS Arabidopsis thaliana 316 + 6 CAACTG MYB binding site involved in drought-inducibility

P-box Oryza sativa 693 + 10 GCCTTTTGAGT gibberellin-responsive element Sp1 Zea mays 50 + 5.5 CC(G/A)CCC light responsive element TATCCAT/C-motif Oryza sativa 1142 - 7 TATCCAT TCT-motif Arabidopsis thaliana 295 - 6 TCTTAC part of a light responsive element



circadian






http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HV%7EGAG-motif%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ZM%7EGC-motif%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EI-box%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27LL%7EI-box%27&StartAt=0&NbRecs=10




http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27OS%7ETATCCAT%2FC-motif%27&StartAt=0&NbRecs=10




gene28202











AT1-motif Solanum tuberosum 92 - 11 ATTAATTTTACA part of a light responsive module

ATCC-motif Pisum sativum 452 - 8 CAATCCTC part of a conserved DNA module involved in light responsiveness

ATCT-motif Pisum sativum 1300 + 9 AATCTAATCC part of a conserved DNA module involved in light responsiveness







http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ST%7EAT1-motif%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PS%7EATCC-motif%27&StartAt=0&NbRecs=10











GAG-motif Spinacia oleracea 294 + 7 AGAGATG part of a light responsive element



I-box Flaveria trinervia 550 + 7 GATATGG part of a light responsive element



O2-site Zea mays 547 + 9 GATGATATGG cis-acting regulatory element involved in zein metabolism

regulation


























TGA-element Brassica oleracea 1101 - 6 AACGAC auxin-responsive element


















as1 Arabidopsis thaliana 613 + 8 TGACGTCA cis-acting regulatory element involved in the root-specific

expression

gene21039 AACA_motif Oryza sativa 385 - 11 TAACAAACTCCA involved in endosperm-specific

negative expression


ABRE Arabidopsis thaliana 1219 - 6 TACGTG cis-acting element involved in the abscisic acid responsiveness

ABRE Oryza sativa 1217 - 9 AGTACGTGGC cis-acting element involved in the abscisic acid responsiveness

AE-box Arabidopsis thaliana 10 + 8 AGAAACAT part of a module for light response






http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7Eas1%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27OS%7EAACA_motif%27&StartAt=0&NbRecs=10



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27OS%7EABRE%27&StartAt=0&NbRecs=10








ATCT-motif Arabidopsis thaliana 520 - 9 AATCTAATCT part of a conserved DNA module involved in light responsiveness




G-Box Pisum sativum 798 + 6 CACGTT cis-acting regulatory element involved in light responsiveness

G-Box Antirrhinum majus 1219 + 6 CACGTA cis-acting regulatory element involved in light responsiveness


G-box Brassica oleracea 798 - 8 TAAACGTG cis-acting regulatory element involved in light responsiveness

G-box Daucus carota 1219 - 6 TACGTG cis-acting regulatory element involved in light responsiveness



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EATCT-motif%27&StartAt=0&NbRecs=10







http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27BO%7EG-box%27&StartAt=0&NbRecs=10





HD-Zip 1 Arabidopsis thaliana 80 + 8.5 CAAT(A/T)ATTG element involved in

differentiation of the palisade mesophyll cells

HD-Zip 2 Arabidopsis thaliana 80 + 8 CAAT(G/C)ATTG element involved in the control of leaf morphology development


I-box

Nicotiana plumbaginifolia 752 - 9 CTCTTATGCT part of a light responsive element


MNF1 Zea mays 420 + 7 GTGCCC(A/T)(A/T) light responsive element









http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EHD-Zip%201%27&StartAt=0&NbRecs=10



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27NP%7EI-box%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ZM%7EMNF1%27&StartAt=0&NbRecs=10




TC-rich repeats Nicotiana tabacum 1024 - 9 GTTTTCTTAC cis-acting element involved in defense and stress responsiveness

TGA-element Brassica oleracea 1031 + 6 AACGAC auxin-responsive element

circadian



circadian



circadian



gene21311

ABRE Arabidopsis thaliana 1018 - 6 CACGTG cis-acting element involved in the abscisic acid responsiveness

AE-box Arabidopsis thaliana 1305 + 8 AGAAACTT part of a module for light response



ATGCAAAT motif Oryza sativa 185 - 8 ATACAAAT cis-acting regulatory element associated to the TGAGTCA

motif


Box I Pisum sativum 657 + 7 TTTCAAA light responsive element

G-Box Pisum sativum 1018 - 6 CACGTG cis-acting regulatory element involved in light responsiveness













G-box Larix laricina 541 - 9 GACACGTAGT cis-acting regulatory element involved in light responsiveness

G-box Arabidopsis thaliana 1018 - 6 CACGTG cis-acting regulatory element involved in light responsiveness

G-box Zea mays 944 - 9 GACATGTGGT cis-acting regulatory element involved in light responsiveness

GT1-motif Solanum tuberosum 1186 - 10 ATGGTGGTTGG light responsive element



P-box Oryza sativa 660 - 7 CCTTTTG gibberellin-responsive element









circadian



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27LL%7EG-box%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EG-box%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ST%7EGT1-motif%27&StartAt=0&NbRecs=10











gene28137













EIRE Nicotiana tabacum 1493 - 7 TTCGACC elicitor-responsive element ELI-box3 Brassica oleracea 628 + 9 AAACCAATT elicitor-responsive element


GCN4_motif Oryza sativa 170 - 7 TGAGTCA cis-regulatory element involved in endosperm expression















GT1-motif Solanum tuberosum 561 - 10 ATGGTGGTTGG light responsive element












TC-rich repeats Nicotiana tabacum 63 + 9 ATTCTCTAAC cis-acting element involved in defense and stress responsiveness

TCT-motif Arabidopsis thaliana 248 - 6 TCTTAC part of a light responsive element



as-2-box Nicotiana tabacum 1068 - 9 GATAatGATG involved in shoot-specific

expression and light responsiveness











http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27NT%7Eas-2-box%27&StartAt=0&NbRecs=10

circadian



gene19355

ABRE Hordeum vulgare 903 - 9 GCAACGTGTC cis-acting element involved in the abscisic acid responsiveness

AE-box Arabidopsis thaliana 207 - 8 AGAAACAA part of a module for light response





ATCT-motif Arabidopsis thaliana 84 + 9 AATCTAATCT part of a conserved DNA module involved in light responsiveness



Box I Pisum sativum 736 - 7 TTTCAAA light responsive element Box I Pisum sativum 805 + 7 TTTCAAA light responsive element

Box-W1 Petroselinum crispum 110 - 6 TTGACC fungal elicitor responsive element

EIRE Nicotiana tabacum 910 + 7 TTCGACC elicitor-responsive element


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HV%7EABRE%27&StartAt=0&NbRecs=10












G-box Arabidopsis thaliana 491 + 10 TCCTCGTGGCA cis-acting regulatory element involved in light responsiveness

G-box Zea mays 1387 + 6 CACGAC cis-acting regulatory element involved in light responsiveness

G-box Zea mays 905 + 6 CACGTT cis-acting regulatory element involved in light responsiveness




GARE-motif Brassica oleracea 150 - 7 TCTGTTG gibberellin-responsive element

GATA-motif Arabidopsis thaliana 130 + 7 GATAGGA part of a light responsive element

GT1-motif Avena sativa 689 - 7 GGTTAAT light responsive element GT1-motif Avena sativa 1281 - 7 GGTTAAT light responsive element GT1-motif Solanum tuberosum 1238 - 9 GTGTGTGAA light responsive element GT1-motif Arabidopsis thaliana 1282 - 6 GGTTAA light responsive element GT1-motif Arabidopsis thaliana 690 - 6 GGTTAA light responsive element GT1-motif Arabidopsis thaliana 1250 - 6 GGTTAA light responsive element


I-box Arabidopsis thaliana 380 - 9 GATAAGGGT part of a light responsive element

I-box Triticum aestivum 382 - 8 AGATAAGG part of a light responsive element


















http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27TA%7EI-box%27&StartAt=0&NbRecs=10

MBS Zea mays 109 + 6 CGGTCA MYB Binding Site


regulation






TCA-element Brassica oleracea 1171 - 9 TCAGAAGAGG cis-acting element involved in salicylic acid responsiveness




as-2-box Nicotiana tabacum 318 + 9 GATAatGATG involved in shoot-specific



















circadian



circadian



circadian



circadian



circadian



circadian



gene19356







essential for the anaerobic inductio


















CCGTCC-box Arabidopsis thaliana 214 + 6 CCGTCC cis-acting regulatory element related to meristem specific

activation


activation


activation


activation


activation

CCGTCC-box Arabidopsis thaliana 246 - 6 CCGTCC cis-acting regulatory element related to meristem specific

activation






http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7ECCGTCC-box%27&StartAt=0&NbRecs=10








ERE Dianthus caryophyllus 799 + 8 ATTTCAAA ethylene-responsive element



G-box Zea mays 793 - 6 CACGTC cis-acting regulatory element involved in light responsiveness

GA-motif Arabidopsis thaliana 544 + 8 ATAGATAA part of a light responsive element

GA-motif Glycine max 1424 + 8 AAGGAAGA part of a light responsive element












http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EGA-motif%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27GM%7EGA-motif%27&StartAt=0&NbRecs=10










MNF1 Zea mays 287 + 6.5 GTGCCC(A/T)(A/T) light responsive element


O2-site Zea mays 790 + 9 GTTGACGTGA cis-acting regulatory element involved in zein metabolism

regulation





Sp1 Zea mays 592 + 5.5 CC(G/A)CCC light responsive element Sp1 Zea mays 1353 + 5 CC(G/A)CCC light responsive element Sp1 Zea mays 858 + 5.5 CC(G/A)CCC light responsive element Sp1 Zea mays 854 + 5 CC(G/A)CCC light responsive element Sp1 Zea mays 1275 + 5.5 CC(G/A)CCC light responsive element

TATC-box Oryza sativa 1175 - 7 TATCCCA cis-acting element involved in gibberellin-responsiveness

























circadian



gene24461

ABRE Hordeum vulgare 1252 - 9 CGCACGTGTC cis-acting element involved in the abscisic acid responsiveness

ABRE Arabidopsis thaliana 1254 - 6 CACGTG cis-acting element involved in the abscisic acid responsiveness


AE-box Arabidopsis thaliana 760 - 8 AGAAACAT part of a module for light response















AT-rich sequence Pisum sativum 68 - 9 TAAAATACT element for maximal elicitor-mediated activation (2copies)


motif Box I Pisum sativum 201 - 7 TTTCAAA light responsive element



CCAAT-box Hordeum vulgare 1063 + 6 CAACGG MYBHv1 binding site CCAAT-box Hordeum vulgare 1353 + 6 CAACGG MYBHv1 binding site



G-Box Pisum sativum 1254 - 6 CACGTG cis-acting regulatory element involved in light responsiveness


G-box Arabidopsis thaliana 1254 - 6 CACGTG cis-acting regulatory element involved in light responsiveness




http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PS%7EAT-rich%20sequence%27&StartAt=0&NbRecs=10














GARE-motif Brassica oleracea 224 - 7 AAACAGA gibberellin-responsive element GARE-motif Brassica oleracea 922 + 7 AAACAGA gibberellin-responsive element GARE-motif Brassica oleracea 272 + 7 AAACAGA gibberellin-responsive element



HD-Zip 1 Arabidopsis thaliana 537 + 8 CAAT(A/T)ATTG element involved in


HD-Zip 2 Arabidopsis thaliana 537 + 8.5 CAAT(G/C)ATTG element involved in the control of leaf morphology development

I-box

Nicotiana plumbaginifolia 1224 + 9 CTCTTATGCT part of a light responsive element



O2-site Zea mays 1296 - 9 GATGACATGG cis-acting regulatory element involved in zein metabolism

regulation P-box Oryza sativa 263 + 7 CCTTTTG gibberellin-responsive element
























TCA-element Nicotiana tabacum 982 - 9 CCATCTTTTT cis-acting element involved in salicylic acid responsiveness

TCCC-motif Spinacia oleracea 664 - 7 TCTCCCT part of a light responsive element





gene21008

ABRE Hordeum vulgare 278 - 9 CCGCGTAGGC cis-acting element involved in the abscisic acid responsiveness











ACE Petroselinum crispum 237 - 9 CTAACGTATT cis-acting element involved in light responsiveness







AT1-motif Solanum tuberosum 1389 - 13 AATTATTTTTTATT part of a light responsive module

ATCT-motif Arabidopsis thaliana 1117 + 9 AATCTAATCT part of a conserved DNA module involved in light responsiveness


motif

















GAG-motif Hordeum vulgare 1191 - 7 GGAGATG part of a light responsive element

GARE-motif Brassica oleracea 710 - 7 AAACAGA gibberellin-responsive element

GCN4_motif Oryza sativa 843 - 7 TGTGTCA cis-regulatory element involved in endosperm expression

Gap-box Arabidopsis thaliana 1107 + 9.5 CAAATGAA(A/G)A part of a light responsive element


LTR Hordeum vulgare 1421 + 6 CCGAAA cis-acting element involved in low-temperature responsiveness





















Sp1 Zea mays 256 - 5.5 CC(G/A)CCC light responsive element Sp1 Oryza sativa 1186 - 6 GGGCGG light responsive element






circadian



circadian



circadian



gene23043

ABRE Oryza sativa 1260 - 11 GACACGTACGT cis-acting element involved in the abscisic acid responsiveness




http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27OS%7ESp1%27&StartAt=0&NbRecs=10











ABRE Hordeum vulgare 1261 + 9 CGCACGTGTC cis-acting element involved in the abscisic acid responsiveness

ACE Petroselinum crispum 1261 - 9 GACACGTATG cis-acting element involved in light responsiveness













G-box Oryza sativa 1262 + 7 GTACGTG cis-acting regulatory element involved in light responsiveness












http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27OS%7EG-box%27&StartAt=0&NbRecs=10


GAG-motif Hordeum vulgare 1321 - 7 GGAGATG part of a light responsive element

GARE-motif Brassica oleracea 1113 + 7 AAACAGA gibberellin-responsive element

GC-motif Zea mays 1437 + 6 CCCCCG enhancer-like element involved in anoxic specific inducibility


I-box Flaveria trinervia 996 - 7 GATATGG part of a light responsive element




Sp1 Zea mays 1174 + 5 CC(G/A)CCC light responsive element Sp1 Zea mays 1434 + 5.5 CC(G/A)CCC light responsive element Sp1 Zea mays 1274 + 5 CC(G/A)CCC light responsive element Sp1 Zea mays 1224 + 5.5 CC(G/A)CCC light responsive element Sp1 Zea mays 1304 + 5 CC(G/A)CCC light responsive elemen
























TGG-motif Gossypium hirsutum 566 + 8 GGTTGCCA part of a light responsive element



gene02697


AE-box Arabidopsis thaliana 258 + 8 AGAAACAA part of a module for light response

AT-rich element Glycine max 135 + 10 ATAGAAATCAA binding site of AT-rich DNA binding protein (ATBP-1)


motif






http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27GH%7ETGG-motif%27&StartAt=0&NbRecs=10




http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27GM%7EAT-rich%20element%27&StartAt=0&NbRecs=10










GT1-motif Solanum tuberosum 345 - 8 AATCCACA light responsive element



LAMP-element Pisum sativum 463 + 8 CTTTATCA part of a light responsive element


O2-site Zea mays 1224 + 9 GATGACATGA cis-acting regulatory element involved in zein metabolism

regulation












http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PS%7ELAMP-element%27&StartAt=0&NbRecs=10




















circadian



gene02696





















Box I Pisum sativum 1310 - 7 TTTCAAA light responsive element Box III Pisum sativum 946 - 9 CATTTACACT protein binding site



ERE Dianthus caryophyllus 1310 - 8 ATTTCAAA ethylene-responsive element










http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PS%7EBox%20III%27&StartAt=0&NbRecs=10





GATA-motif Pisum sativum 1180 - 7 GATAGGG part of a light responsive element

GC-motif Zea mays 621 - 6 CCCCCG enhancer-like element involved in anoxic specific inducibility


GT1-motif Arabidopsis thaliana 31 + 6 GGTTAA light responsive element GT1-motif Solanum tuberosum 501 + 10 ATGGTGGTTGG light responsive element

I-box Zea mays 1180 - 7 GATAGGG part of a light responsive element




MBS Zea mays 1107 + 6 CGGTCA MYB Binding Site P-box Oryza sativa 1114 + 7 CCTTTTG gibberellin-responsive element







Sp1 Zea mays 66 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 858 - 5.5 CC(G/A)CCC light responsive element

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PS%7EGATA-motif%27&StartAt=0&NbRecs=10





http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ZM%7EI-box%27&StartAt=0&NbRecs=10











Sp1 Oryza sativa 845 - 6 GGGCGG light responsive element


TC-rich repeats Nicotiana tabacum 1467 + 10 ATTCTCTAAC cis-acting element involved in defense and stress responsiveness


circadian



circadian



circadian



gene26806 3-AF1 binding site Solanum tuberosum 51 + 10 AAGAGATATTT light responsive element

ABRE Arabidopsis thaliana 582 - 7 TACGGTC cis-acting element involved in the abscisic acid responsiveness


AE-box Arabidopsis thaliana 985 - 8 AGAAACTT part of a module for light response










http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ST%7E3-AF1%20binding%20site%27&StartAt=0&NbRecs=10







AT-rich sequence Pisum sativum 1203 + 9 TAAAATACT element for maximal elicitor-mediated activation (2copies)

Box I Pisum sativum 1317 - 7 TTTCAAA light responsive element Box I Pisum sativum 1390 - 7 TTTCAAA light responsive element

Box II Solanum tuberosum 83 - 9 TGGTAATAA part of a light responsive element


G-Box Triticum aestivum 500 - 10 TCCACATGGCA cis-acting regulatory element involved in light responsiveness


G-box Solanum tuberosum 502 - 7 CACATGG cis-acting regulatory element involved in light responsiveness





GATA-motif Solanum tuberosum 529 + 9 AAGGATAAGG part of a light responsive element

GT1-motif Arabidopsis thaliana 282 - 6 GGTTAA light responsive element GT1-motif Avena sativa 544 - 7 GGTTAAT light responsive element GT1-motif Solanum tuberosum 303 + 9 GTGTGTGAA light responsive element


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PS%7EAT-rich%20sequence%27&StartAt=0&NbRecs=10



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ST%7EBox%20II%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27TA%7EG-Box%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ST%7EG-box%27&StartAt=0&NbRecs=10





http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ST%7EGATA-motif%27&StartAt=0&NbRecs=10








L-box Petroselinum crispum 1458 - 10 TCTCACCTACC part of a light responsive element


MSA-like Catharanthus roseus 959 - 9 (T/C)C(T/C)AACGG(T/C)(T/C)A

cis-acting element involved in cell cycle regulation











Sp1 Zea mays 429 - 5.5 CC(G/A)CCC light responsive element





http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PC%7EL-box%27&StartAt=0&NbRecs=10












chs-Unit 1 m1 Hordeum vulgare 515 + 10 ACCTAACCCGC part of a light responsive element

gene13324 AE-box Arabidopsis thaliana 1194 - 8 AGAAACTT part of a module for light

response








motif






http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HV%7Echs-Unit%201%20m1%27&StartAt=0&NbRecs=10








Box I Pisum sativum 1241 - 7 TTTCAAA light responsive element Box I Pisum sativum 207 - 7 TTTCAAA light responsive element Box I Pisum sativum 1309 + 7 TTTCAAA light responsive element


CCAAT-box Hordeum vulgare 1328 - 6 CAACGG MYBHv1 binding site ERE Dianthus caryophyllus 207 - 8 ATTTCAAA ethylene-responsive element ERE Dianthus caryophyllus 1308 + 8 ATTTCAAA ethylene-responsive element ERE Dianthus caryophyllus 1241 - 8 ATTTCAAA ethylene-responsive element



GT1-motif Avena sativa 372 + 7 GGTTAAT light responsive element

HSE Brassica oleracea 1333 - 9 AGAAAATTCG cis-acting element involved in heat stress responsiveness


LAMP-element Pisum sativum 144 - 8 CTTTATCA part of a light responsive element




RY-element Helianthus annuus 135 + 8 CATGCATG cis-acting regulatory element

involved in seed-specific regulation



















http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HA%7ERY-element%27&StartAt=0&NbRecs=10


TC-rich repeats Nicotiana tabacum 1144 + 9 ATTTTCTCCA cis-acting element involved in defense and stress responsiveness






circadian



circadian



circadian



circadian

Lycopersicon esculentum 1454 - 9 CAAAGATATC cis-acting regulatory element


gene28478 AE-box Arabidopsis thaliana 998 + 8 AGAAACTT part of a module for light

response
















ATCT-motif Zea mays 970 - 9 AATCTGATCG part of a conserved DNA module involved in light responsiveness

Box I Pisum sativum 1155 + 7 TTTCAAA light responsive element Box I Pisum sativum 1198 - 7 TTTCAAA light responsive element

Box II Solanum tuberosum 1427 + 9 TGGTAATAA part of a light responsive element








L-box

Lycopersicon esculentum 1202 + 11 AAATTAACCAAC part of a light responsive element








http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ST%7EBox%20II%27&StartAt=0&NbRecs=10








http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27LE%7EL-box%27&StartAt=0&NbRecs=10





O2-site Zea mays 595 - 9 GATGATATGG cis-acting regulatory element involved in zein metabolism

regulation









Sp1 Zea mays 1215 - 5.5 CC(G/A)CCC light responsive element




TCA-element Brassica oleracea 1420 + 9 TCAGAAGAGG cis-acting element involved in salicylic acid responsiveness















circadian



gene31797 AE-box Arabidopsis thaliana 586 + 8 AGAAACAT part of a module for light

response


AE-box Arabidopsis thaliana 1167 - 8 AGAAACAT part of a module for light response









Box I Pisum sativum 1343 - 7 TTTCAAA light responsive element ELI-box3 Brassica oleracea 1336 + 9 AAACCAATT elicitor-responsive element
















GATT-motif Triticum aestivum 323 + 11 CTGCAGATTTCT part of a light responsive element


I-box Gossypium hirsutum 1318 + 10 AAGATAAGGCT part of a light responsive element


O2-site Zea mays 574 - 9 GATGACATGG cis-acting regulatory element involved in zein metabolism

regulation

RY-element Helianthus annuus 623 + 8 CATGCATG cis-acting regulatory element

involved in seed-specific regulation










http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27TA%7EGATT-motif%27&StartAt=0&NbRecs=10


http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27GH%7EI-box%27&StartAt=0&NbRecs=10



http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HA%7ERY-element%27&StartAt=0&NbRecs=10






Sp1 Zea mays 296 + 5 CC(G/A)CCC light responsive element Sp1 Zea mays 347 + 5 CC(G/A)CCC light responsive element Sp1 Zea mays 385 + 5 CC(G/A)CCC light responsive element Sp1 Zea mays 701 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 702 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 703 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 704 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 705 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 706 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 707 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 708 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 709 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 710 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 711 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 712 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 713 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 714 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 715 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 716 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 717 - 5 CC(G/A)CCC light responsive element





























WUN-motif Brassica oleracea 1389 + 9 TCATTACGAA wound-responsive element

gene09561



































GA-motif Glycine max 1388 - 8 AAGGAAGA part of a light responsive element


GCN4_motif Oryza sativa 889 + 7 TGAGTCA cis-regulatory element involved in endosperm expression

LAMP-element Spinacia oleracea 1469 + 9 CCAAAACCA part of a light responsive element













http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27SO%7ELAMP-element%27&StartAt=0&NbRecs=10





MNF1 Zea mays 121 - 6.5 GTGCCC(A/T)(A/T) light responsive element













chs-CMA2a Hordeum vulgare 993 + 8 GCAATTCC part of a light responsive element












http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HV%7Echs-CMA2a%27&StartAt=0&NbRecs=10

circadian



circadian



circadian



gene01286


AE-box Arabidopsis thaliana 1153 + 8 AGAAACAA part of a module for light response





ATCT-motif Pisum sativum 1300 + 9 AATCTAATCC part of a conserved DNA module involved in light responsiveness




















G-box Brassica oleracea 490 - 9 TAACACGTAG cis-acting regulatory element involved in light responsiveness
























I-box Arabidopsis thaliana 809 - 9 GATAAGGGT part of a light responsive element

LAMP-element Pisum sativum 1007 - 8 CTTTATCA part of a light responsive element



MNF1 Zea mays 1124 - 7 GTGCCC(A/T)(A/T) light responsive element









Sp1 Zea mays 150 - 5 CC(G/A)CCC light responsive element Sp1 Zea mays 1094 - 5.5 CC(G/A)CCC light responsive element Sp1 Zea mays 161 - 5.5 CC(G/A)CCC light responsive element





















chs-CMA1a Daucus carota 737 - 8 TTACTTAA part of a light responsive element

chs-CMA2a Petroselinum crispum 402 - 8 TCACTTGA part of a light responsive element

gene08253













http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PC%7Echs-CMA2a%27&StartAt=0&NbRecs=10









G-Box Pisum sativum 1198 - 6 CACGTT cis-acting regulatory element involved in light responsiveness

G-box Zea mays 50 + 6 CACGTC cis-acting regulatory element involved in light responsiveness

G-box Zea mays 1198 - 6 CACGTT cis-acting regulatory element involved in light responsiveness

G-box Brassica oleracea 55 - 9 TAACACGTAG cis-acting regulatory element involved in light responsiveness


GC-motif Zea mays 824 - 7 GCCCCGG enhancer-like element involved in anoxic specific inducibility


regulation



















Sp1 Oryza sativa 827 + 6 GGGCGG light responsive element

TC-rich repeats Nicotiana tabacum 1138 - 9 ATTTTCTCCA cis-acting element involved in defense and stress responsiveness


circadian



circadian



gene08254


ABRE Hordeum vulgare 827 - 9 CGTACGTGCA cis-acting element involved in the abscisic acid responsiveness

AE-box Arabidopsis thaliana 625 - 8 AGAAACTT part of a module for light response
















AT1-motif Solanum tuberosum 814 + 11 ATTAATTTTACA part of a light responsive module







CCAAT-box Hordeum vulgare 979 - 6 CAACGG MYBHv1 binding site


G-box Zea mays 146 - 9 GACATGTGGT cis-acting regulatory element involved in light responsiveness


















GATA-motif Solanum tuberosum 87 - 9 AAGGATAAGG part of a light responsive element

GATA-motif Arabidopsis thaliana 1430 + 7 GATAGGA part of a light responsive element


Gap-box Arabidopsis thaliana 862 - 9.5 CAAATGAA(A/G)A part of a light responsive element














http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ST%7EGATA-motif%27&StartAt=0&NbRecs=10











TC-rich repeats Nicotiana tabacum 160 + 9 ATTTTCTCCA cis-acting element involved in defense and stress responsiveness

WUN-motif Brassica oleracea 1173 + 9 TCATTACGAA wound-responsive element

circadian



circadian



gene26330 ACE Petroselinum crispum 1057 - 9 CTAACGTATT cis-acting element involved in




ATC-motif Spinacia oleracea 769 + 8 AGTAATCT part of a conserved DNA module involved in light responsiveness





















activation








GCN4_motif Oryza sativa 401 + 7 TGAGTCA cis-regulatory element involved in endosperm expression
















I-box Solanum tuberosum 292 + 9 TGATAATGT part of a light responsive element

I-box Helianthus annuus 1206 + 10 atGATAAGGTC part of a light responsive element

I-box Helianthus annuus 1166 + 10 atGATAAGGTC part of a light responsive element

I-box Larix laricina 1033 + 9 GTATAAGGCC part of a light responsive element









TGG-motif Helianthus annuus 1426 - 9 TGGTGGCTA part of a light responsive element




http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HA%7EI-box%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HA%7EI-box%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27LL%7EI-box%27&StartAt=0&NbRecs=10








http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27HA%7ETGG-motif%27&StartAt=0&NbRecs=10




circadian



gene24088










motif


Box III Pisum sativum 964 - 9 CATTTACACT protein binding site CCAAT-box Hordeum vulgare 197 + 6 CAACGG MYBHv1 binding site CCAAT-box Hordeum vulgare 226 + 6 CAACGG MYBHv1 binding site









http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PS%7EBox%20III%27&StartAt=0&NbRecs=10













GARE-motif Brassica oleracea 392 + 7 TCTGTTG gibberellin-responsive element GARE-motif Brassica oleracea 539 - 7 AAACAGA gibberellin-responsive element GT1-motif Solanum tuberosum 729 - 8 AATCCACA light responsive element




MSA-like Catharanthus roseus 195 + 9 TCCAACGGT cis-acting element involved in cell cycle regulation



















TGA-box Glycine max 27 - 8 TGACGTAA part of an auxin-responsive element











circadian



gene30401 3-AF1 binding site Solanum tuberosum 1130 - 10 TAAGAGAGGAA light responsive element












http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ST%7E3-AF1%20binding%20site%27&StartAt=0&NbRecs=10













CCAAT-box Hordeum vulgare 1201 + 6 CAACGG MYBHv1 binding site



DRE Arabidopsis thaliana 386 - 9 TACCGACAT "cis-acting element involved in

dehydration, low-temp, salt stresse











http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27AT%7EDRE%27&StartAt=0&NbRecs=10





GA-motif Arabidopsis thaliana 892 - 8 ATAGATAA part of a light responsive element




























TGA-element Brassica oleracea 159 - 6 AACGAC auxin-responsive element



WUN-motif Brassica oleracea 247 - 9 TCATTACGAA wound-responsive element





rbcS-CMA7a Zea mays 1286 - 9 GGCGATAAGG part of a light responsive element

gene05722 A-box Petroselinum crispum 1246 + 6 CCGTCC cis-acting regulatory element




Box I Pisum sativum 1465 - 7 TTTCAAA light responsive element CCAAT-box Hordeum vulgare 1084 + 6 CAACGG MYBHv1 binding site


activation







http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ZM%7ErbcS-CMA7a%27&StartAt=0&NbRecs=10

http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PC%7EA-box%27&StartAt=0&NbRecs=10













GT1-motif Avena sativa 1158 - 7 GGTTAAT light responsive element GT1-motif Solanum tuberosum 1387 + 8 AATCCACA light responsive element GT1-motif Arabidopsis thaliana 1159 - 6 GGTTAA light responsive element

Gap-box Arabidopsis thaliana 1023 + 9 AAATGGAGA part of a light responsive element



I-box Triticum aestivum 1258 - 9 aAGATAAGA part of a light responsive element

I-box Solanum tuberosum 1474 + 10 TATTATCTAGA part of a light responsive element














http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27TA%7EI-box%27&StartAt=0&NbRecs=10







regulation


regulation

O2-site Zea mays 351 + 9 GATGATATGG cis-acting regulatory element involved in zein metabolism

regulation


regulation


regulation





















circadian

Lycopersicon esculentum 1381 + 9 CAAAGATATC cis-acting regulatory element


gene25541 ACE Petroselinum crispum 566 + 9 AAAACGTTTA cis-acting element involved in






CCAAT-box Hordeum vulgare 754 - 6 CAACGG MYBHv1 binding site CCAAT-box Hordeum vulgare 1444 - 6 CAACGG MYBHv1 binding site


activation ERE Dianthus caryophyllus 1071 - 8 ATTTCAAA ethylene-responsive element GARE-motif Brassica oleracea 657 + 7 AAACAGA gibberellin-responsive element















GT1-motif Arabidopsis thaliana 888 - 6 GGTTAA light responsive element GT1-motif Avena sativa 1234 - 7 GGTTAAT light responsive element GT1-motif Arabidopsis thaliana 898 - 6 GGTTAA light responsive element GT1-motif Arabidopsis thaliana 1235 - 6 GGTTAA light responsive element


I-box Solanum tuberosum 683 - 10 TATTATCTAGA part of a light responsive element


regulation









WUN-motif Brassica oleracea 1005 + 9 AAATTTCCT wound-responsive element

















circadian



gene02557





AuxRR-core Nicotiana tabacum 464 + 7 GGTCCAT cis-acting regulatory element involved in auxin responsiveness


Box I Pisum sativum 658 - 7 TTTCAAA light responsive element CCAAT-box Hordeum vulgare 1108 + 6 CAACGG MYBHv1 binding site CCAAT-box Hordeum vulgare 1140 + 6 CAACGG MYBHv1 binding site

CCGTCC-box Arabidopsis thaliana 1490 - 6 CCGTCC cis-acting regulatory element related to meristem specific

activation






http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27NT%7EAuxRR-core%27&StartAt=0&NbRecs=10










G-box Solanum tuberosum 1226 - 7 CACATGG cis-acting regulatory element involved in light responsiveness





GATT-motif Triticum aestivum 1035 - 11 CTGCAGATTTCT part of a light responsive element


GCN4_motif Oryza sativa 1309 - 7 TGTGTCA cis-regulatory element involved in endosperm expression

GT1-motif Arabidopsis thaliana 702 - 6 GGTTAA light responsive element GT1-motif Arabidopsis thaliana 1298 + 6 GGTTAA light responsive element GT1-motif Arabidopsis thaliana 1112 + 6 GGTTAA light responsive element

HD-Zip 1 Arabidopsis thaliana 603 + 8.5 CAAT(A/T)ATTG element involved in





http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27ST%7EG-box%27&StartAt=0&NbRecs=10





http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27TA%7EGATT-motif%27&StartAt=0&NbRecs=10







HD-Zip 2 Arabidopsis thaliana 603 + 8 CAAT(G/C)ATTG element involved in the control of leaf morphology development






Pc-CMA2a Spinacia oleracea 11 - 12 CAACCAATGAAAA part of a light responsive element



TCA-element Nicotiana tabacum 239 - 9 CCATCTTTTT cis-acting element involved in salicylic acid responsiveness

TGA-element Brassica oleracea 36 + 6 AACGAC auxin-responsive element TGA-element Brassica oleracea 1432 + 6 AACGAC auxin-responsive element TGA-element Brassica oleracea 800 + 6 AACGAC auxin-responsive element



circadian









http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27SO%7EPc-CMA2a%27&StartAt=0&NbRecs=10








gene10300 A-box Petroselinum crispum 973 + 6 CCGTCC cis-acting regulatory element A-box Petroselinum crispum 978 + 6 CCGTCC cis-acting regulatory element


ABRE Oryza sativa 852 - 9 GCCGCGTGGC cis-acting element involved in the abscisic acid responsiveness

ACE Petroselinum hortense 1245 + 7 ACGTGGA cis-acting element involved in light responsiveness

















http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PH%7EACE%27&StartAt=0&NbRecs=10

















activation


activation





EIRE Nicotiana tabacum 821 + 7 TTCGACC elicitor-responsive element

























GC-motif Zea mays 562 + 7 GCCCCGG enhancer-like element involved in anoxic specific inducibility

I-box

Nicotiana plumbaginifolia 488 - 9 CTCTTATGCT part of a light responsive element
















TC-rich repeats Nicotiana tabacum 1274 - 9 ATTTTCTCCA cis-acting element involved in defense and stress responsiveness





gene03741


ABRE Arabidopsis thaliana 1016 + 7 TACGGTC cis-acting element involved in the abscisic acid responsiveness

ACE Petroselinum hortense 220 - 7 ACGTGGA cis-acting element involved in light responsiveness












http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27PH%7EACE%27&StartAt=0&NbRecs=10








AT-rich element Glycine max 689 - 10 ATAGAAATCAA binding site of AT-rich DNA binding protein (ATBP-1)



Box I Pisum sativum 655 + 7 TTTCAAA light responsive element Box I Pisum sativum 1486 - 7 TTTCAAA light responsive element Box I Pisum sativum 1306 + 7 TTTCAAA light responsive element




ERE Dianthus caryophyllus 654 + 8 ATTTCAAA ethylene-responsive element





http://bioinformatics.psb.ugent.be/webtools/plantcare/cgi-bin/show_site_info.htpl?QWhere=ID_of_Site%20like%20%27GM%7EAT-rich%20element%27&StartAt=0&NbRecs=10

















MBS Zea mays 1018 + 6 CGGTCA MYB Binding Site MBS Zea mays 523 - 6 CGGTCA MYB Binding Site


























WUN-motif Brassica oleracea 751 - 9 TCATTACGAA wound-responsive element

chs-CMA1a Daucus carota 1146 + 8 TTACTTAA part of a light responsive element

circadian








Table S3. List of primers used in this study.

Gene Name Primers Primer Sequence (5' to 3')

FvLBD1A 25294-qRT-F1 GTGAGTGACCTTCAAGCACA

25294-qRT-R1 AGGAAGCTCAAGTTGGTCTG

FvLBD1B 23226-qRT-F2 GAGCAGATGCAGTGAGCAGC

23226-qRT-R1 TCGAGTATGGTTGCTGCTGC

FvLBD2 17794-qRT-F1 GAGGAGGATGGGTTCAGTGG

17794-qRT-R1 GATGGCCACTTCATCAATAG

FvLBD4A 20083-qRT-F1 CTGGCTCTGGCTCAGGCTGAG

20083-qRT-R1 CCAAGCTGCTATGGTCCATC

FvLBD4B 30046-qRT-F1 CTCAACTGGCCATCGCACAAG

30046-qRT-R1 GCCTGATCTACCACCATATC

FvLBD6 21541-qRT-F1 GTACCACCACTGGCATTGGC

21541-qRT-R1 GCAGCAGCCCTAGGTTGCTG

FvLBD9 12646-qRT-F1 CGTGGACACAATTACCGACC

12646-qRT-R1 CGTCTCTATGTTCCATGCCAG

FvLBD12A 28202-qRT-F2 CTGTGAGCAGCTTGGTGTAC

28202-qRT-R1 CTACTGAGGTACTGTGGAATG

FvLBD12B 21039-qRT-F2 CAGTGAGCAGTCTAGTGTATG

21039-qRT-R1 GTCATGGATTACATTGCTAG

FvLBD15A 21311-qRT-F1 CAAGCGGAGCTCAATACTGTG

21311-qRT-R1 CGCTGTTGGGTTGAGTGTAC

FvLBD15B 28137-qRT-F1 CTTCATGCTGTCAGGACAGAA

28137-qRT-R1 GAGGAACAGCCGGTAGTGATG

FvLBD16 08250-qRT-F1 CATGCTTACAAGCACAATTG

08250-qRT-R1 TCTCCTGCATATAGTTGATAG

FvLBD18 19355-qRT-F1 GCTAATCGCGCAACCTCAACTC

19355-qRT-R1 GCCTGTGGAGCAGTTCACGAGC

FvLBD19 19356-qRT-F1 CTATGTTCAGGCTCGTCTTG

19356-qRT-R1 ACTTGGAGATCTCCATCATC

FvLBD20 24461-qRT-F1 CAAGGGTATGGATGGTTCAG

24461-qRT-R1 GAGTCGTCGTTCCACCAGTC

FvLBD21 21008-qRT-F2 GGACACCGTAAGTTCACTCG

21008-qRT-R1 CAGTTGAGCTCTGACTGAAG

FvLBD22A 23043-qRT-F1 GTCGTCATTGCATATCAAGC

23043-qRT-R1 CATGATCCTGATGATGATGATG

FvLBD22B 02697-qRT-F1 GCAGCTCAAGATTGCCGAGG

02697-qRT-R1 CTGAATTGATTCGACATCATG

FvLBD22C 02696-qRT-F2 CAGCAATGTGCTGACCTAAG

02696-qRT-R2 CTTGTCGAATTCGCTGACCA

FvLBD24A 26806-qRT-F1 GCTGCAGACACTCTGTATTA

26806-qRT-R2 CTGAGTCTGCCCAACAATGG

FvLBD24B 13324-qRT-F2 CATTGCAACCGTATCTCCGAGC

13324-qRT-R1 TCATGAACTTGATCAGTACTC

FvLBD25A 28478-qRT-F1 CAGATAGGGATATGTGGACAG

28478-qRT-R1 CTGCACTTCGAGACGGTGAC

FvLBD25B 31797-qRT-F1 CTATGCTTGCAATGAGATCA

31797-qRT-R1 TGATCAACATTCCATGGAAG

FvLBD27A 09561-qRT-F1 GACACTAGCCATGGGATCAG

09561-qRT-R1 GTAAGACTGAAGCATGCTGC

FvLBD27B 01286-qRT-F1 GTCGATGCTGTGGCAGTTCA

01286-qRT-R1 ATGTTCTAACGATTGCGTAC

FvLBD29A 08253-qRT-F1 GTGGAACAGCATCATACCAT

08253-qRT-R1 ATCCACATCCCGATCATAATG

FvLBD29B 08254-qRT-F1 GCACAACTAGCTTCAGCCAA

08254-qRT-R1 GTGATCATACTGCATACTCG

FvLBD33 26330-qRT-F2 GCTTGTGGAAGTTCTGAAGG

26330-qRT-R1 GCGATGGAAGGGTCATTCAAC

FvLBD36A 24088-qRT-F2 GGTCATCATCAGCTGAGGT

24088-qRT-R1 CCTTATGCGGCAGCAGCTGCG

FvLBD36B 30401-qRT-F1 CAGCAGCAGCAGATGTTCGAG

30401-qRT-R1 GCTGCCGCAGCTTGCATCTG

FvLBD38A 05722-qRT-F1 GCTGACGGGACTGTCTGTAC

05722-qRT-R1 GTCAACCTCAGGTCCAGATC

FvLBD38B 25541-qRT-F2 GAACGGAGCGACAGGGCTTC

25541-qRT-R2 CTACGCAACTCCGACGATGC

FvLBD39 02557-qRT-F1 CAGAGGCTCATGCGGAATTC

02557-qRT-R1 CCACCGCTAGTAGTCATGAC

FvLBD41 10300-qRT-F1 GCCAACGTAGACGGCGACAG

10300-qRT-R1 CGTGCGGTGCACGTGATGAC

FvLBD42 03741-qRT-F1 CTCCTGTGACATACGCCACG

03741-qRT-R1 CGGTTTGCCCTGGTTCATCT

FvGADPH GADPH-qRT-F1 CAGAAGACTGTTGATGGACC

GADPH-qRT-F1 GCAGCCTTAATCTGGTCATAG

supplementary data name gene id (ncbi) fvlbd1azea mays 575 + 5 cc(g/a)ccc light responsive element...

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