supplemental figure s1 a. 18 hu man ir -486 5p 2 6 16 14 n ...€¦ · 0 2 4 6 8 10 12 14 16 50%...
TRANSCRIPT
Supplemental Figure S1: MicroRNA-486 is a muscle-enriched microRNA whose expression is reduced in dystrophin-deficient muscle.
Supplemental Figure S1
02468
1012141618
Rel
ativ
e ex
pres
sion
/RN
U6-
2 Human miR-486-5pA.
B.
C.
0
2
4
6
8
10
12
Rel
ativ
e ex
pres
sion
/RN
U6-
2 Mouse miR-486-5p
0.00.20.40.60.81.01.21.41.61.82.0
Rel
ativ
e fo
ld e
xpre
ssio
n/R
NU
6-2 Mouse miR-486-5p WT
mdx5cv
***
** ** **NS
Supplemental Figure S2
Supplemental Figure S2: MicroRNA-486 overexpressing mice have improved gastrocnemius mdx5cv muscle histology.
mdx5cv:miR-486 Tgmdx5cv
A.WT miR-486 Tg
Gas
troc
nem
ius
B. Gastrocnemius
0
10
20
30
40
50
60
70
80
90
100
mdx5cv mdx5cv:miR-486 Tg
% o
f Fib
ers/
600
Fibe
rsPercent Fibers with Centralized Nuclei
*
Adult Mice: 2-4 months
Supplemental Figure S3: Skeletal muscle fiber type is not significantly altered in miR-486 overexpressing mice.
Supplemental Figure S3Adult Mice: 2-4 monthsA.
B.
0102030405060708090
100
Type I Type IIa Type IIb
% F
iber
Typ
e
Soleus WTmiR-486 Tgmdx5cvmdx5cv:miR-486 Tg
0102030405060708090
100
Type I Type IIa Type IIb
% F
iber
Typ
e
TA
0102030405060708090
100
Type I Type IIa Type IIb
% F
iber
Typ
e
Gastroc
****
****
**
**
WT
Type
IIa/
Type
I
miR-486 Tg mdx5cv mdx5cv:miR-486 Tg
WT miR-486 Tg mdx5cv mdx5cv:miR-486 Tg
Type
IIa/
Type
I
Sol
TA
Supplemental Figure S4: Serum dystrophic biochemistries are improved in aged dystrophic mice.
Supplemental Figure S4
B.A.
0500
1000150020002500300035004000
Enzy
mat
ic U
/µl S
erum
Serum CK
0
50
100
150
200
Enzy
mat
ic U
/µl S
erum
Serum ALT
NS
NS
Aged Mice: 10-14 months
****
GAPDH
MyHC
50%DM (2% FBS)GM (20% FBS)
D1 D2 D3 D4 D7
DOCK3
Dp427
Normal DMD
90% 50%DM (2% FBS)GM (20% FBS)
D1 D2 D3 D4 D790%
A. B.
0
2
4
6
8
10
12
14
16
50% confl.
90% confl.
Day 1 diff.
Day 2 diff.
Day 3 diff.
Day 4 diff.
Day 7 diff.
Rel
ativ
e ex
pres
sion
leve
l/18s
Rb DOCK3 qPCR Normal
DMD
ND ND
*
****
Supplemental Figure S5
Supplemental Figure S5: DOCK3 expression increases during myogenic differentiation and is highly expressed in DMD myotubes.
C.
0
2
4
6
8
10
0 1 3 5 7 14
Rel
ativ
e Ex
pres
sion
/18s
Rb
Days Post TA Ctx Injury
Dock3 qPCR WTmdx5cv
**
***
**
Supplemental Figure S6
Supplemental Figure S6: Overexpression of miR-486 in dystrophic myotubes increases activated RAC1 expression levels.
Primary Myotubes
scram
bled-m
iR
miR-48
6
scram
bled-m
iR
miR-48
6
Normal DMD
RHOA
RAC1 (Total)
β-actin
RAC1-GTP
DOCK3
CDC42
Primary Antisera
Supplemental Table S1: List of primary antibodies used in this manuscript.
Supplemental Table S1
Antibody Company Species Use/Dilutionβ-tubulin-HRP Cell Signaling Technology Rabbit monoclonal WB: 1:2000β-actin (AC-15) Sigma-Aldrich Mouse monoclonal WB: 1:2000
GAPDH (FL-335) Santa Cruz Biotechnologies Rabbit polyclonal WB: 1:5000PTEN Cell Signaling Technology Rabbit monoclonal WB: 1:1000
phospho-AKT (S473) Cell Signaling Technology Rabbit monoclonal WB: 1:1000phospho-AKT (T308) Cell Signaling Technology Rabbit monoclonal WB: 1:1000AKT (pan) (C67E7) Cell Signaling Technology Rabbit monoclonal WB: 1:1000
AKT1 Cell Signaling Technology Rabbit monoclonal WB: 1:1000AKT2 Cell Signaling Technology Rabbit monoclonal WB: 1:1000AKT3 Cell Signaling Technology Rabbit monoclonal WB: 1:1000
DOCK3/MOCA (H-93) Santa Cruz Biotechnologies Rabbit polyclonal WB: 1:1000Hemagglutinin/HA Clontech Laboratories, Inc Rabbit polyclonal WB: 1:1000
Cleaved Caspase-3 (5A1E) Cell Signaling Technology Rabbit monoclonal WB: 1:1000Rac1 ThermoScientific Mouse monoclonal WB: 1:1000
RhoA (67B9) Cell Signaling Technology Rabbit monoclonal WB: 1:1000Cdc42 (11A11) Cell Signaling Technology Rabbit monoclonal WB: 1:1000
Dystrophin (C-term) Abcam Rabbit polyclonal WB: 1:1000Myosin Heavy Chain Maine Biotechnology Mouse monoclonal WB: 1:1000Laminin α2 (4H8-2) Sigma-Aldrich Rat monoclonal IF: 1:200
Laminin (L9393) Sigma-Aldrich Rabbit polyclonal IF: 1:200MF20 (myosin heavy chain) DSHB Iowa Mouse monoclonal IF: 1:50BA-F8 (Type I, slow myosin) DSHB Iowa Mouse monoclonal IF: 1:200
SC-71 (Type IIa myosin) DSHB Iowa Mouse monoclonal IF: 1:50BF-F3 (Type IIb myosin) DSHB Iowa Mouse monoclonal IF: 1:50
Supplemental Table S2Real Time qPCR Primers
Primer Name Gene Symbol Sequence 5' to 3' SpecieshDOCK3_qPCR_forward1 DOCK3 CAGGTGCGGGAGGTTAAGC HumanhDOCK3_qPCR_reverse1 DOCK3 CTGAGACACTAATCTGGTCCGA Humanh18sRib_qPCR_forward1 18sRib CCGATAACGAACGAGACTCTGG Humanh18sRib_qPCR_reverse1 18sRib TAGGGTAGGCACACGCTGAGCC HumanmDock3_qPCR_forward1 Dock3 AGAGGAGTTTCAACAAAGAAGCC MousemDock3_qPCR_reverse1 Dock3 CAGACTGGCCCACTCTTGTAG Mouse18sRib_qPCR_forward1 18sRib CTCAACACGGGAAACCTCAC Mouse18sRib_qPCR_reverse1 18sRib TGCCAGAGTCTCGTTCGTTAT Mouse
Supplemental Table S2: List of real time PCR primers used in this manuscript.