supplemental figure 1 - stanford universitymendel.stanford.edu/.../supp_figure_1.pdf ·...
TRANSCRIPT
![Page 1: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/1.jpg)
Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007) between individual syntenic chromosome pairs. Ordered C. savignyi reftig identifiers are shown along the y-axis, with blue lines indicating boundaries between reftigs. The aspect ratio of each plot is one. As C. intestinalis chromosome 11 was absent from the assembly and the alignments, there is no plot to its syntenic counterpart, C. savignyi chromosome 10. No plot is shown for C. savignyi chromosome 14 as no syntenic chromosome 14 was found in C. intestinalis.
![Page 2: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/2.jpg)
C. sa
vign
yi c
hrom
osom
e 1
C. intestinalis chromosome 1
30
173
51
6462
5
162
14
27
31
11
1
107
35
p q
A
![Page 3: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/3.jpg)
q
C. sa
vign
yi c
hrom
osom
e 1
C. intestinalis chromosome 3
30
173
51
6462
5
162
14
27
31
11
1
107
35
p q
B
![Page 4: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/4.jpg)
C. sa
vign
yi c
hrom
osom
e 2
C. intestinalis chromosome 9
289
118
132
156
140
55
235
58
4
C
![Page 5: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/5.jpg)
C. sa
vign
yi c
hrom
osom
e 3
C. intestinalis chromosome 8
20
116
234
24
86
134
7
65
172207325
D
![Page 6: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/6.jpg)
C. sa
vign
yi c
hrom
osom
e 4
C. intestinalis chromosome 2
19
96
17
85
226122
22
209324251
E
![Page 7: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/7.jpg)
C. sa
vign
yi c
hrom
osom
e 5
C. intestinalis chromosome 5
91
220
48
12
60
133
206244
F
![Page 8: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/8.jpg)
C. sa
vign
yi c
hrom
osom
e 6
C. intestinalis chromosome 10
37
56
44
0
G
![Page 9: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/9.jpg)
C. sa
vign
yi c
hrom
osom
e 7
C. intestinalis chromosome 7
H
25
79
67
117
125
131
2
318
![Page 10: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/10.jpg)
C. sa
vign
yi c
hrom
osom
e 8
C. intestinalis chromosome 14
I
238
76
49
26
335
165
239
![Page 11: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/11.jpg)
C. sa
vign
yi c
hrom
osom
e 9
C. intestinalis chromosome 4
J
167
70
15
90
73
3
41
166
![Page 12: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/12.jpg)
C. sa
vign
yi c
hrom
osom
e 11
C. intestinalis chromosome 6
K
77
23
155
151
247
![Page 13: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/13.jpg)
C. sa
vign
yi c
hrom
osom
e 12
C. intestinalis chromosome 12
L
54
9
186
88
![Page 14: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)](https://reader033.vdocuments.us/reader033/viewer/2022042419/5f3607e4761d41561657f858/html5/thumbnails/14.jpg)
C. sa
vign
yi c
hrom
osom
e 13
C. intestinalis chromosome 13
M
72
143
286