statistical modeling of calgb 80405 (alliance) identifies ... · male (blue) strata. dot size and...

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Results Methods CALGB 80405 is a Phase III clinical trial of mCRC patients that evaluated first line FOLFOX or FOLFIRI in combination with randomly assigned cetuximab or bevacizumab. Primary results did not show a statistically significant difference in arms. Sidedness has emerged as an important prognostic factor in treatment decisions for mCRC patients. However, side-dependent risk factors are currently not known. These factors may be important for further refining mCRC prognosis and informing treatment decisions. In order to examine the role of right versus left sideness in mCRC, we built multivariate predictive models utilizing a novel, hypothesis-free machine learning approaches. We used 99 baseline and demographic variables from the CALGB 80405 study population (n=2,334). 1,904 patients had information about left versus right tumor side and were included in our analysis. Of these, 949 were KRAS wild-type (primary cohort). The primary endpoints were overall survival (OS) and progression-free survival (PFS). To individually model all combinations of 99 potentially predictive variables (i.e 99!) is prohibitively complex and time consuming. Therefore, we used a Monte Carlo Bayesian Generalized Linear Model analytical platform, REFS TM , to identify a set of highly optimized and parsimonious multivariate models (ensemble) most likely to predict OS and PFS. This approach minimizes the risk of overfitting. By evaluating the importance of a particular variables within each model in the ensemble, we estimated the uncertainty surrounding each variable and, through ensemble frequency, we identified key variables that are consistently important. Sub-group models for side and for gender examined differences in drivers of disease based on this stratification. Statistical modeling of CALGB 80405 (Alliance) identifies influential factors in metastatic colorectal cancer (mCRC) dependent on primary (1 o ) tumor side Leon Furchtgott 1 *, David Swanson 1 *, Boris Hayete 1 , Iya Khalil 1 , Diane Wuest 1 , Kelly Rich 1 , Robert Miller 1 , Andrew B. Nixon 2 , Donna Niedzwiecki 3 , Jeffrey A. Meyerhardt 4 , Eileen Mary O'Reilly 5 , Fang-Shu Ou 6 , Heinz-Josef Lenz 7 , Federico Innocenti 8 , Alan P. Venook 9 , Alliance for Clinical Trials in Oncology 1 GNS Healthcare, Cambridge, MA; 2 Duke University Medical Center, Durham, NC; 3 Duke University, Durham, NC; 4 Dana-Farber Cancer Institute/Partners CancerCare, Boston, MA; 5 Memorial Sloan-Kettering Cancer Center, New York, NY; 6 Mayo Clinic Cancer Center, Rochester, MN; 7 University of Southern California Norris Comprehensive Cancer Center, Los Angeles, CA; 8 University of North Carolina, Chapel Hill, NC; 9 University of California, San Francisco, San Francisco, CA Primary side, AST level, ECOG PS, and site of metastases play a central role in explaining variation in OS and PFS. Depending on the primary tumor side, different factors appear to drive OS: Left sided: urine protein level and treatment intent for left-side mCRC Right sided: liver and lung site of disease for right-side mCRC. Different factors may impact OS for men and women. Our findings suggest that side- and gender- specific variables may be important for predicting mCRC course and survival. Additional research, including prospective studies and evaluation of biologic pathways, is necessary to confirm these findings. Support: U10CA180821, U10CA180882, Eli Lilly and Company, Genentech, Pfizer. Background Conclusions Outcome (OS or PFS) Demographic variable(s) Lab, pathology, imaging etc. variable(s) Medication variables, including chemotherapy Past medical history Figure 1: Schematic of REFS multivariate predictive inference platform Figure 3: Forest plot showing key variables predictive of PFS in full cohort. Dot size and shading proportional to ensemble frequency. Figure 2: Forest plot showing key variables predictive of OS in primary cohort. Dot size and shading proportional to ensemble frequency. Progression-free survival (full cohort) : Key variables predictive of PFS include AST concentration, ECOG performance status, use of full-dose coagulants, and lung and abdominal site of disease indicators. Figure 4: Forest plot showing key variables predictive of OS in left (green) and right (purple) strata. Dot size and shading proportional to ensemble frequency. Primary side stratum-specific models (OS): In primary side stratum-specific models, urine protein level, treatment intent (palliative as reference) and hemoglobin concentration were more associated with left-side survival, while liver and lung sites of disease were more associated with right- side survival. Figure 5: Urine protein level is associated with left-side survival (left Kaplan-Meier plot) but not right- side survival (right plot) Figure 6: Treatment intent is associated with left-side survival (left Kaplan-Meier plot) but not right- side survival (right plot) Gender stratum-specific models (OS): In gender stratum-specific models, women were more influenced by metastatic status, BMI, and liver site of disease; men were more influenced by urine protein level and diabetes status. Figure 7: Forest plot showing key variables predictive of OS in female (red) and male (blue) strata. Dot size and shading proportional to ensemble frequency. Figure 8: Diabetes is associated with survival among men (bottom Kaplan- Meier plot) but not women (top plot) Model 1 Model 128 Model exploration for single model Ensemble of 128 optimized models Overall survival (full cohort) : Key variables predictive of OS include primary side, AST concentration, ECOG performance status, treatment intent (palliative reference), and local primary and abdominal site of disease indicators.

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  • Results

    Methods

    • CALGB 80405 is a Phase III clinical trial of mCRC patientsthat evaluated first line FOLFOX or FOLFIRI in combinationwith randomly assigned cetuximab or bevacizumab. Primaryresults did not show a statistically significant difference inarms.• Sidedness has emerged as an important prognostic factorin treatment decisions for mCRC patients.• However, side-dependent risk factors are currently notknown. These factors may be important for further refiningmCRC prognosis and informing treatment decisions.• In order to examine the role of right versus left sideness inmCRC, we built multivariate predictive models utilizing anovel, hypothesis-free machine learning approaches.

    • We used 99 baseline and demographic variables from theCALGB 80405 study population (n=2,334). 1,904 patientshad information about left versus right tumor side and wereincluded in our analysis. Of these, 949 were KRAS wild-type(primary cohort).• The primary endpoints were overall survival (OS) andprogression-free survival (PFS).• To individually model all combinations of 99 potentiallypredictive variables (i.e 99!) is prohibitively complex and timeconsuming. Therefore, we used a Monte Carlo BayesianGeneralized Linear Model analytical platform, REFSTM, toidentify a set of highly optimized and parsimoniousmultivariate models (ensemble) most likely to predict OS andPFS. This approach minimizes the risk of overfitting.

    • By evaluating the importance of a particular variables withineach model in the ensemble, we estimated the uncertaintysurrounding each variable and, through ensemble frequency,we identified key variables that are consistently important.• Sub-group models for side and for gender examineddifferences in drivers of disease based on this stratification.

    Statistical modeling of CALGB 80405 (Alliance) identifies influential factors in metastatic colorectal cancer (mCRC) dependent on primary (1o) tumor side

    •Leon Furchtgott1*, David Swanson1*, Boris Hayete1, Iya Khalil1, Diane Wuest1, Kelly Rich1, Robert Miller1, Andrew B. Nixon2, Donna Niedzwiecki3, Jeffrey A. Meyerhardt4, Eileen Mary O'Reilly5, Fang-Shu Ou6, Heinz-Josef Lenz7, Federico Innocenti8, Alan P. Venook9,

    Alliance for Clinical Trials in Oncology•1GNS Healthcare, Cambridge, MA; 2Duke University Medical Center, Durham, NC; 3Duke University, Durham, NC; 4Dana-Farber Cancer Institute/Partners CancerCare, Boston,

    MA; 5Memorial Sloan-Kettering Cancer Center, New York, NY; 6Mayo Clinic Cancer Center, Rochester, MN; 7University of Southern California Norris Comprehensive Cancer Center, Los Angeles, CA; 8University of North Carolina, Chapel Hill, NC; 9University of California, San Francisco, San Francisco, CA

    • Primary side, AST level, ECOG PS, and siteof metastases play a central role inexplaining variation in OS and PFS.• Depending on the primary tumor side,different factors appear to drive OS:

    • Left sided: urine protein level andtreatment intent for left-side mCRC• Right sided: liver and lung site ofdisease for right-side mCRC.

    • Different factors may impact OS for menand women.• Our findings suggest that side- and gender-specific variables may be important forpredicting mCRC course and survival.• Additional research, including prospectivestudies and evaluation of biologic pathways,is necessary to confirm these findings.

    Support: U10CA180821, U10CA180882, EliLilly and Company, Genentech, Pfizer.

    Background

    Conclusions

    Outcome (OS or PFS)

    Demographic variable(s)Lab, pathology, imaging etc. variable(s)Medication variables, including chemotherapyPast medical history

    Figure 1: Schematic of REFS multivariate predictive inference platform

    Figure 3: Forest plot showing key variables predictive of PFS in full cohort. Dot size and shading proportional to ensemble frequency.

    Figure 2: Forest plot showing key variables predictive of OS in primary cohort. Dot size and shading proportional to ensemble frequency.

    Progression-free survival (full cohort): Key variables predictive of PFS include AST concentration, ECOG performance status, use of full-dose coagulants, and lung and abdominal site of disease indicators.

    Figure 4: Forest plot showing key variables predictive of OS in left (green) and right (purple) strata. Dot size and shading proportional to ensemble frequency.

    Primary side stratum-specific models (OS): In primary side stratum-specific models, urine protein level, treatment intent (palliative as reference)and hemoglobin concentration were more associated with left-side survival, while liver and lung sites of disease were more associated with right-side survival.

    Figure 5:Urine protein level is associated with left-side survival (left Kaplan-Meier plot) but not right-side survival (right plot)

    Figure 6:Treatment intent is associated with left-side survival (left Kaplan-Meier plot) but not right-side survival (right plot)

    Gender stratum-specific models (OS): In gender stratum-specific models, women were moreinfluenced by metastatic status, BMI, and liver site of disease; men were more influenced by urineprotein level and diabetes status.

    Figure 7: Forest plot showing key variables predictive of OS in female (red) and male (blue) strata. Dot size and shading proportional to ensemble frequency.

    Figure 8: Diabetes is associated with survival among men (bottom Kaplan-Meier plot) but not women (top plot)

    Model 1

    Model 128

    Model exploration for single model

    Ensemble of 128 optimized models

    Overall survival (full cohort): Key variables predictive of OS include primary side, AST concentration, ECOG performance status, treatment intent (palliative reference), and local primary and abdominal site of disease indicators.