READMEAF07: Cross-Annotated T. californica Transcripts Present in C. milli (IDs.Tc.11 set11)T. californica Transcripts Present in C. milliHere we present 7100 assembled T. californica transcipts present in C. milliThis file is the combination of Set07 and Set10 (TableS07)SheetContentsAF07A:T. californica Transcripts Present in C. milli

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AF07ATranscript_IDAssembly_IDC. milli Gene IDEntryEntry nameStatusProtein namesGene namesOrganismLengthGene ontology (GO)Gene ontology (biological process)Gene ontology (molecular function)Gene ontology (cellular component)Gene ontology IDsSubcellular location [CC]Mapped PubMed IDPubMed IDTranscript_00011Assembly01_TRINITY_DN10031_c0_g1::Assembly01_TRINITY_DN10031_c0_g1_i1::g.56530::m.56530XP_007909921.1K4FUD5K4FUD5_CALMIunreviewedZinc transporter ZIP13-like proteinCallorhinchus milii (Ghost shark)394integral component of membrane [GO:0016021]; metal ion transmembrane transporter activity [GO:0046873]metal ion transmembrane transporter activity [GO:0046873]integral component of membrane [GO:0016021]GO:0016021; GO:0046873Transcript_00033Assembly01_TRINITY_DN10080_c0_g1::Assembly01_TRINITY_DN10080_c0_g1_i1::g.56467::m.56467XP_007901200.1V9L5D9V9L5D9_CALMIunreviewedSerine/threonine-protein phosphatase (EC 3.1.3.16)Callorhinchus milii (Ghost shark)307phosphoprotein phosphatase activity [GO:0004721]phosphoprotein phosphatase activity [GO:0004721]GO:000472124402279Transcript_00168Assembly01_TRINITY_DN1048_c0_g2::Assembly01_TRINITY_DN1048_c0_g2_i1::g.44736::m.44736XP_007894972.1K4GLB1K4GLB1_CALMIunreviewedFatty acid binding protein 3Callorhinchus milii (Ghost shark)133lipid binding [GO:0008289]; transporter activity [GO:0005215]lipid binding [GO:0008289]; transporter activity [GO:0005215]GO:0005215; GO:0008289Transcript_00189Assembly01_TRINITY_DN1054_c0_g1::Assembly01_TRINITY_DN1054_c0_g1_i1::g.44708::m.44708XP_007897221.1K4FUD8K4FUD8_CALMIunreviewedCysteine-rich protein 2-like proteinCallorhinchus milii (Ghost shark)89zinc ion binding [GO:0008270]zinc ion binding [GO:0008270]GO:0008270Transcript_00316Assembly01_TRINITY_DN10914_c0_g1::Assembly01_TRINITY_DN10914_c0_g1_i1::g.78019::m.78019XP_007891752.1V9KJY0V9KJY0_CALMIunreviewedBrain protein I3Callorhinchus milii (Ghost shark)136integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_00331Assembly01_TRINITY_DN1093_c0_g1::Assembly01_TRINITY_DN1093_c0_g1_i1::g.44830::m.44830XP_007901857.1K4GAZ2K4GAZ2_CALMIunreviewed39S ribosomal protein L55, mitochondrialCallorhinchus milii (Ghost shark)127ribosome [GO:0005840]ribosome [GO:0005840]GO:000584024402279Transcript_00360Assembly01_TRINITY_DN11009_c0_g1::Assembly01_TRINITY_DN11009_c0_g1_i1::g.4137::m.4137XP_007909739.1V9KNR2V9KNR2_CALMIunreviewedAladin-like proteinCallorhinchus milii (Ghost shark)51624402279Transcript_00392Assembly01_TRINITY_DN11074_c0_g1::Assembly01_TRINITY_DN11074_c0_g1_i1::g.4142::m.4142XP_007903083.1V9KSB0V9KSB0_CALMIunreviewedEpithelial membrane protein 2Callorhinchus milii (Ghost shark)160integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:0016021SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU363088}; Multi-pass membrane protein {ECO:0000256|RuleBase:RU363088}.24402279Transcript_00427Assembly01_TRINITY_DN11159_c0_g1::Assembly01_TRINITY_DN11159_c0_g1_i1::g.131162::m.131162XP_007883912.1V9L744V9L744_CALMIunreviewedSpiDCallorhinchus milii (Ghost shark)275nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]nucleus [GO:0005634]GO:0003700; GO:0005634; GO:0043565SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004019, ECO:0000256|SAAS:SAAS00594387}.24402279Transcript_00544Assembly01_TRINITY_DN11348_c0_g2::Assembly01_TRINITY_DN11348_c0_g2_i1::g.135452::m.135452XP_007896126.1V9KEC5V9KEC5_CALMIunreviewedH2A histone family, member Y2Callorhinchus milii (Ghost shark)391nucleosome [GO:0000786]; nucleus [GO:0005634]; DNA binding [GO:0003677]DNA binding [GO:0003677]nucleosome [GO:0000786]; nucleus [GO:0005634]GO:0000786; GO:0003677; GO:000563424402279Transcript_00567Assembly01_TRINITY_DN11390_c0_g1::Assembly01_TRINITY_DN11390_c0_g1_i1::g.135583::m.135583XP_007893729.1V9LCC5V9LCC5_CALMIunreviewed14 kDa phosphohistidine phosphatase-like proteinCallorhinchus milii (Ghost shark)12024402279Transcript_00600Assembly01_TRINITY_DN11442_c0_g1::Assembly01_TRINITY_DN11442_c0_g1_i1::g.191192::m.191192XP_007894974.1K4G7N7K4G7N7_CALMIunreviewed39S ribosomal protein L53, mitochondrialCallorhinchus milii (Ghost shark)107ribosome [GO:0005840]ribosome [GO:0005840]GO:0005840Transcript_00655Assembly01_TRINITY_DN11542_c0_g1::Assembly01_TRINITY_DN11542_c0_g1_i1::g.131629::m.131629XP_007902493.1V9KKT2V9KKT2_CALMIunreviewedBSD domain-containing protein 1-like proteinCallorhinchus milii (Ghost shark)45524402279Transcript_00694Assembly01_TRINITY_DN11637_c0_g1::Assembly01_TRINITY_DN11637_c0_g1_i1::g.139283::m.139283XP_007883519.1K4FSK4K4FSK4_CALMIunreviewedMelanoma-derived growth regulatory proteinCallorhinchus milii (Ghost shark)134Transcript_00812Assembly01_TRINITY_DN11864_c0_g1::Assembly01_TRINITY_DN11864_c0_g1_i1::g.80069::m.80069XP_007900009.1K4FT93K4FT93_CALMIunreviewedGlutathione S-transferase theta-like proteinCallorhinchus milii (Ghost shark)239transferase activity [GO:0016740]transferase activity [GO:0016740]GO:0016740Transcript_00837Assembly01_TRINITY_DN11904_c0_g1::Assembly01_TRINITY_DN11904_c0_g1_i1::g.165710::m.165710XP_007901826.1K4GKM7K4GKM7_CALMIunreviewedEukaryotic translation initiation factor 3 subunit F (eIF3f) (Eukaryotic translation initiation factor 3 subunit 5)EIF3F EIF3S5Callorhinchus milii (Ghost shark)277eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; translation initiation factor activity [GO:0003743]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446]formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446]translation initiation factor activity [GO:0003743]eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]GO:0001731; GO:0003743; GO:0005852; GO:0006446; GO:0016282; GO:0033290SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_03005, ECO:0000256|SAAS:SAAS00003543}.Transcript_00846Assembly01_TRINITY_DN11912_c0_g1::Assembly01_TRINITY_DN11912_c0_g1_i1::g.165839::m.165839XP_007898695.1V9KPK8V9KPK8_CALMIunreviewedChromobox protein-like 3-like proteinCallorhinchus milii (Ghost shark)195nucleus [GO:0005634]nucleus [GO:0005634]GO:0005634SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00539527}.24402279Transcript_00847Assembly01_TRINITY_DN11915_c0_g1::Assembly01_TRINITY_DN11915_c0_g1_i1::g.165809::m.165809XP_007906981.1V9KF16V9KF16_CALMIunreviewedCentromere/kinetochore protein zw10Callorhinchus milii (Ghost shark)782chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]; mitotic nuclear division [GO:0007067]mitotic nuclear division [GO:0007067]chromosome, centromeric region [GO:0000775]; nucleus [GO:0005634]GO:0000775; GO:0005634; GO:000706724402279Transcript_00880Assembly01_TRINITY_DN11979_c0_g2::Assembly01_TRINITY_DN11979_c0_g2_i1::g.165936::m.165936XP_007891529.1V9K8P0V9K8P0_CALMIunreviewedTranscription factor Dp-1Callorhinchus milii (Ghost shark)421nucleus [GO:0005634]; transcription factor complex [GO:0005667]; DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; mitotic cell cycle [GO:0000278]; transcription, DNA-templated [GO:0006351]mitotic cell cycle [GO:0000278]; transcription, DNA-templated [GO:0006351]DNA binding [GO:0003677]; transcription coactivator activity [GO:0003713]; transcription factor activity, sequence-specific DNA binding [GO:0003700]nucleus [GO:0005634]; transcription factor complex [GO:0005667]GO:0000278; GO:0003677; GO:0003700; GO:0003713; GO:0005634; GO:0005667; GO:0006351SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU003796}.24402279Transcript_00885Assembly01_TRINITY_DN11984_c0_g2::Assembly01_TRINITY_DN11984_c0_g2_i1::g.165872::m.165872XP_007895314.1V9L4E0V9L4E0_CALMIunreviewedAlba-like protein C9orf23Callorhinchus milii (Ghost shark)187nucleic acid binding [GO:0003676]nucleic acid binding [GO:0003676]GO:000367624402279Transcript_00924Assembly01_TRINITY_DN12071_c0_g1::Assembly01_TRINITY_DN12071_c0_g1_i1::g.87781::m.87781XP_007886603.1V9KUZ1V9KUZ1_CALMIunreviewedSulfotransferase (EC 2.8.2.-)Callorhinchus milii (Ghost shark)282sulfotransferase activity [GO:0008146]sulfotransferase activity [GO:0008146]GO:000814624402279Transcript_00941Assembly01_TRINITY_DN12124_c0_g2::Assembly01_TRINITY_DN12124_c0_g2_i1::g.56088::m.56088XP_007886453.1V9LC12V9LC12_CALMIunreviewedZinc finger FYVE domain-containing protein 21-like proteinCallorhinchus milii (Ghost shark)248metal ion binding [GO:0046872]metal ion binding [GO:0046872]GO:004687224402279Transcript_00946Assembly01_TRINITY_DN1213_c0_g1::Assembly01_TRINITY_DN1213_c0_g1_i1::g.93851::m.93851XP_007903983.1V9L7U0V9L7U0_CALMIunreviewedAP-3 complex subunit sigma-2-like proteinCallorhinchus milii (Ghost shark)193membrane coat [GO:0030117]; protein transporter activity [GO:0008565]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192]intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192]protein transporter activity [GO:0008565]membrane coat [GO:0030117]GO:0006886; GO:0008565; GO:0016192; GO:003011724402279Transcript_00964Assembly01_TRINITY_DN12182_c0_g1::Assembly01_TRINITY_DN12182_c0_g1_i1::g.55999::m.55999XP_007910314.1V9KTY3V9KTY3_CALMIunreviewedRegulation of nuclear pre-mRNA domain-containing 1ACallorhinchus milii (Ghost shark)37924402279Transcript_00971Assembly01_TRINITY_DN12198_c0_g2::Assembly01_TRINITY_DN12198_c0_g2_i1::g.56097::m.56097XP_007884245.1V9KWG7V9KWG7_CALMIunreviewedTransmembrane protein 120ACallorhinchus milii (Ghost shark)339integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_01009Assembly01_TRINITY_DN1229_c0_g1::Assembly01_TRINITY_DN1229_c0_g1_i1::g.93981::m.93981XP_007898671.1V9KBA4V9KBA4_CALMIunreviewedTax1-binding protein 1Callorhinchus milii (Ghost shark)84624402279Transcript_01179Assembly01_TRINITY_DN12784_c0_g1::Assembly01_TRINITY_DN12784_c0_g1_i1::g.58119::m.58119XP_007907889.1V9KE76V9KE76_CALMIunreviewedB-cell receptor-associated protein 29Callorhinchus milii (Ghost shark)241endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; intracellular protein transport [GO:0006886]intracellular protein transport [GO:0006886]endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]GO:0005783; GO:0006886; GO:001602124402279Transcript_01221Assembly01_TRINITY_DN12905_c0_g1::Assembly01_TRINITY_DN12905_c0_g1_i1::g.54882::m.54882XP_007891920.1V9L7P4V9L7P4_CALMIunreviewedRas-like protein family member 11ACallorhinchus milii (Ghost shark)247intracellular [GO:0005622]; membrane [GO:0016020]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264]small GTPase mediated signal transduction [GO:0007264]GTP binding [GO:0005525]intracellular [GO:0005622]; membrane [GO:0016020]GO:0005525; GO:0005622; GO:0007264; GO:001602024402279Transcript_01281Assembly01_TRINITY_DN13111_c0_g1::Assembly01_TRINITY_DN13111_c0_g1_i1::g.65706::m.65706XP_007894238.1V9KI32V9KI32_CALMIunreviewedBeta-galactosidase (EC 3.2.1.23)Callorhinchus milii (Ghost shark)650beta-galactosidase activity [GO:0004565]; carbohydrate metabolic process [GO:0005975]carbohydrate metabolic process [GO:0005975]beta-galactosidase activity [GO:0004565]GO:0004565; GO:000597524402279Transcript_01297Assembly01_TRINITY_DN13156_c0_g1::Assembly01_TRINITY_DN13156_c0_g1_i1::g.65681::m.65681XP_007894668.1V9KL69V9KL69_CALMIunreviewedPolymerase delta-interacting protein 2-like proteinCallorhinchus milii (Ghost shark)382DNA binding [GO:0003677]DNA binding [GO:0003677]GO:000367724402279Transcript_01311Assembly01_TRINITY_DN13196_c0_g1::Assembly01_TRINITY_DN13196_c0_g1_i1::g.65723::m.65723XP_007882902.1V9LIW5V9LIW5_CALMIunreviewedUncharacterized proteinCallorhinchus milii (Ghost shark)81mitochondrion [GO:0005739]; mitochondrial respiratory chain complex IV assembly [GO:0033617]mitochondrial respiratory chain complex IV assembly [GO:0033617]mitochondrion [GO:0005739]GO:0005739; GO:003361724402279Transcript_01334Assembly01_TRINITY_DN13270_c0_g1::Assembly01_TRINITY_DN13270_c0_g1_i1::g.128996::m.128996XP_007904045.1V9KE02V9KE02_CALMIunreviewedGlutathione S-transferase ACallorhinchus milii (Ghost shark)226transferase activity [GO:0016740]transferase activity [GO:0016740]GO:001674024402279Transcript_01435Assembly01_TRINITY_DN13517_c0_g1::Assembly01_TRINITY_DN13517_c0_g1_i1::g.67982::m.67982XP_007885042.1V9L9M3V9L9M3_CALMIunreviewedPutative alpha-ketoglutarate-dependent dioxygenase ABH6-like proteinCallorhinchus milii (Ghost shark)227dioxygenase activity [GO:0051213]dioxygenase activity [GO:0051213]GO:005121324402279Transcript_01560Assembly01_TRINITY_DN1382_c1_g1::Assembly01_TRINITY_DN1382_c1_g1_i1::g.107641::m.107641XP_007904356.1V9KZI7V9KZI7_CALMIunreviewedMalate dehydrogenase, mitochondrial-like proteinCallorhinchus milii (Ghost shark)367L-malate dehydrogenase activity [GO:0030060]; carbohydrate metabolic process [GO:0005975]; malate metabolic process [GO:0006108]carbohydrate metabolic process [GO:0005975]; malate metabolic process [GO:0006108]L-malate dehydrogenase activity [GO:0030060]GO:0005975; GO:0006108; GO:003006024402279Transcript_01632Assembly01_TRINITY_DN14027_c0_g1::Assembly01_TRINITY_DN14027_c0_g1_i1::g.94189::m.94189XP_007886650.1V9LF64V9LF64_CALMIunreviewedUncharacterized proteinCallorhinchus milii (Ghost shark)19224402279Transcript_01665Assembly01_TRINITY_DN14104_c0_g1::Assembly01_TRINITY_DN14104_c0_g1_i1::g.138156::m.138156XP_007906643.1V9KYT4V9KYT4_CALMIunreviewedPhosphorylase kinase gamma subunit 1Callorhinchus milii (Ghost shark)390phosphorylase kinase complex [GO:0005964]; ATP binding [GO:0005524]; phosphorylase kinase activity [GO:0004689]; glycogen biosynthetic process [GO:0005978]glycogen biosynthetic process [GO:0005978]ATP binding [GO:0005524]; phosphorylase kinase activity [GO:0004689]phosphorylase kinase complex [GO:0005964]GO:0004689; GO:0005524; GO:0005964; GO:000597824402279Transcript_01700Assembly01_TRINITY_DN14236_c0_g1::Assembly01_TRINITY_DN14236_c0_g1_i1::g.182690::m.182690XP_007884358.1V9KT82V9KT82_CALMIunreviewedAdenylosuccinate lyase (ASL) (EC 4.3.2.2) (Adenylosuccinase)Callorhinchus milii (Ghost shark)494(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity [GO:0070626]; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [GO:0004018]; 'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189]'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189](S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity [GO:0070626]; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [GO:0004018]GO:0004018; GO:0006189; GO:0044208; GO:007062624402279Transcript_01807Assembly01_TRINITY_DN1464_c0_g1::Assembly01_TRINITY_DN1464_c0_g1_i1::g.142666::m.142666XP_007900749.1V9LEY2V9LEY2_CALMIunreviewedNADH dehydrogenase 1 alpha subcomplex subunit 11Callorhinchus milii (Ghost shark)173integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_01830Assembly01_TRINITY_DN14721_c0_g1::Assembly01_TRINITY_DN14721_c0_g1_i1::g.3793::m.3793XP_007907715.1V9KUS1V9KUS1_CALMIunreviewedRab9 effector protein with kelch motifsCallorhinchus milii (Ghost shark)37424402279Transcript_01920Assembly01_TRINITY_DN15062_c0_g1::Assembly01_TRINITY_DN15062_c0_g1_i1::g.75290::m.75290XP_007899456.1V9KFT2V9KFT2_CALMIunreviewedSolute carrier family 22 (Organic cation/carnitine transporter), member 5Callorhinchus milii (Ghost shark)555integral component of membrane [GO:0016021]; transmembrane transporter activity [GO:0022857]transmembrane transporter activity [GO:0022857]integral component of membrane [GO:0016021]GO:0016021; GO:002285724402279Transcript_02001Assembly01_TRINITY_DN1536_c0_g1::Assembly01_TRINITY_DN1536_c0_g1_i1::g.133247::m.133247XP_007886992.1V9KHI4V9KHI4_CALMIunreviewedAcyl-coenzyme A oxidaseCallorhinchus milii (Ghost shark)661peroxisome [GO:0005777]; acyl-CoA dehydrogenase activity [GO:0003995]; acyl-CoA oxidase activity [GO:0003997]; flavin adenine dinucleotide binding [GO:0050660]; fatty acid beta-oxidation [GO:0006635]fatty acid beta-oxidation [GO:0006635]acyl-CoA dehydrogenase activity [GO:0003995]; acyl-CoA oxidase activity [GO:0003997]; flavin adenine dinucleotide binding [GO:0050660]peroxisome [GO:0005777]GO:0003995; GO:0003997; GO:0005777; GO:0006635; GO:005066024402279Transcript_02025Assembly01_TRINITY_DN15452_c0_g1::Assembly01_TRINITY_DN15452_c0_g1_i1::g.98576::m.98576XP_007903946.1K4GH87K4GH87_CALMIunreviewedNormal mucosa of esophagus specific 1 (Normal mucosa of esophagus-specific gene 1 protein-like protein)Callorhinchus milii (Ghost shark)8424402279Transcript_02109Assembly01_TRINITY_DN15627_c0_g1::Assembly01_TRINITY_DN15627_c0_g1_i1::g.139455::m.139455XP_007899190.1V9L0E3V9L0E3_CALMIunreviewedVimentin-type intermediate filament-associated coiled-coil protein-like proteinCallorhinchus milii (Ghost shark)18524402279Transcript_02181Assembly01_TRINITY_DN15757_c0_g2::Assembly01_TRINITY_DN15757_c0_g2_i1::g.112550::m.112550XP_007897941.1V9L7P5V9L7P5_CALMIunreviewedZinc finger CCHC domain-containing protein 9-like proteinCallorhinchus milii (Ghost shark)278nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]GO:0003676; GO:000827024402279Transcript_02196Assembly01_TRINITY_DN15792_c0_g1::Assembly01_TRINITY_DN15792_c0_g1_i1::g.112536::m.112536XP_007896025.1V9LB85V9LB85_CALMIunreviewedAurora kinase A-interacting proteinCallorhinchus milii (Ghost shark)207kinase activity [GO:0016301]kinase activity [GO:0016301]GO:001630124402279Transcript_02205Assembly01_TRINITY_DN15813_c0_g1::Assembly01_TRINITY_DN15813_c0_g1_i1::g.64708::m.64708XP_007906816.1V9KJH1V9KJH1_CALMIunreviewedSeptin-2Callorhinchus milii (Ghost shark)351GTP binding [GO:0005525]; cell cycle [GO:0007049]; cell division [GO:0051301]cell cycle [GO:0007049]; cell division [GO:0051301]GTP binding [GO:0005525]GO:0005525; GO:0007049; GO:005130124402279Transcript_02235Assembly01_TRINITY_DN15909_c0_g1::Assembly01_TRINITY_DN15909_c0_g1_i1::g.149902::m.149902XP_007901569.1V9KGU4V9KGU4_CALMIunreviewedADP-ribosylation factor-like protein 8B-ACallorhinchus milii (Ghost shark)186intracellular [GO:0005622]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264]small GTPase mediated signal transduction [GO:0007264]GTP binding [GO:0005525]intracellular [GO:0005622]GO:0005525; GO:0005622; GO:000726424402279Transcript_02267Assembly01_TRINITY_DN15987_c0_g1::Assembly01_TRINITY_DN15987_c0_g1_i1::g.150074::m.150074XP_007902132.1V9KXA8V9KXA8_CALMIunreviewedProtein-lysine N-methyltransferase METTL10 (EC 2.1.1.-) (Methyltransferase-like protein 10)METTL10Callorhinchus milii (Ghost shark)267cytoplasm [GO:0005737]; protein-lysine N-methyltransferase activity [GO:0016279]protein-lysine N-methyltransferase activity [GO:0016279]cytoplasm [GO:0005737]GO:0005737; GO:0016279SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_03188}.24402279Transcript_02272Assembly01_TRINITY_DN15996_c0_g2::Assembly01_TRINITY_DN15996_c0_g2_i1::g.150049::m.150049XP_007882598.1V9KKN1V9KKN1_CALMIunreviewedNegative elongation factor D-like proteinCallorhinchus milii (Ghost shark)580nucleus [GO:0005634]; translation elongation factor activity [GO:0003746]; negative regulation of transcription, DNA-templated [GO:0045892]negative regulation of transcription, DNA-templated [GO:0045892]translation elongation factor activity [GO:0003746]nucleus [GO:0005634]GO:0003746; GO:0005634; GO:004589224402279Transcript_02310Assembly01_TRINITY_DN16091_c0_g1::Assembly01_TRINITY_DN16091_c0_g1_i1::g.78991::m.78991XP_007889788.1V9KW84V9KW84_CALMIunreviewedProtein mab-21-like 3Callorhinchus milii (Ghost shark)38724402279Transcript_02352Assembly01_TRINITY_DN16186_c0_g1::Assembly01_TRINITY_DN16186_c0_g1_i1::g.153461::m.153461XP_007903422.1V9KDF6V9KDF6_CALMIunreviewedEukaryotic translation initiation factor 3 subunit J (eIF3j) (Eukaryotic translation initiation factor 3 subunit 1) (eIF-3-alpha) (eIF3 p35)EIF3J EIF3S1Callorhinchus milii (Ghost shark)244eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; translation initiation factor activity [GO:0003743]; formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446]formation of translation preinitiation complex [GO:0001731]; regulation of translational initiation [GO:0006446]translation initiation factor activity [GO:0003743]eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]GO:0001731; GO:0003743; GO:0005852; GO:0006446; GO:0016282; GO:0033290SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_03009}.24402279Transcript_02353Assembly01_TRINITY_DN16188_c0_g1::Assembly01_TRINITY_DN16188_c0_g1_i1::g.153449::m.153449XP_007909752.1K4FSV0K4FSV0_CALMIunreviewedSerine incorporator 1-like proteinCallorhinchus milii (Ghost shark)475integral component of membrane [GO:0016021]; L-serine transmembrane transporter activity [GO:0015194]; phosphatidylserine metabolic process [GO:0006658]; sphingolipid metabolic process [GO:0006665]phosphatidylserine metabolic process [GO:0006658]; sphingolipid metabolic process [GO:0006665]L-serine transmembrane transporter activity [GO:0015194]integral component of membrane [GO:0016021]GO:0006658; GO:0006665; GO:0015194; GO:0016021Transcript_02431Assembly01_TRINITY_DN16390_c0_g2::Assembly01_TRINITY_DN16390_c0_g2_i1::g.100655::m.100655XP_007897652.1V9KXT2V9KXT2_CALMIunreviewedNuclear transcription factor Y, alphaCallorhinchus milii (Ghost shark)291CCAAT-binding factor complex [GO:0016602]; DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]DNA binding [GO:0003677]; transcription factor activity, sequence-specific DNA binding [GO:0003700]CCAAT-binding factor complex [GO:0016602]GO:0003677; GO:0003700; GO:001660224402279Transcript_02445Assembly01_TRINITY_DN16416_c0_g1::Assembly01_TRINITY_DN16416_c0_g1_i1::g.70214::m.70214XP_007908199.1K4GD60K4GD60_CALMIunreviewedNascent polypeptide-associated complex subunit alphaCallorhinchus milii (Ghost shark)215Transcript_02464Assembly01_TRINITY_DN16447_c0_g1::Assembly01_TRINITY_DN16447_c0_g1_i1::g.70064::m.70064XP_007904804.1K4GJE3K4GJE3_CALMIunreviewedNADH dehydrogenase (Ubiquinone) 1 beta subcomplex, 6Callorhinchus milii (Ghost shark)129Transcript_02496Assembly01_TRINITY_DN16537_c0_g1::Assembly01_TRINITY_DN16537_c0_g1_i1::g.187050::m.187050XP_007900732.1V9L217V9L217_CALMIunreviewedNEDD4 family-interacting protein 1-like proteinCallorhinchus milii (Ghost shark)131integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_02582Assembly01_TRINITY_DN16779_c0_g1::Assembly01_TRINITY_DN16779_c0_g1_i2::g.149085::m.149085XP_007909780.1K4G0D0K4G0D0_CALMIunreviewedAnkyrin repeat domain-containing protein 39-like proteinCallorhinchus milii (Ghost shark)184Transcript_02639Assembly01_TRINITY_DN16903_c0_g1::Assembly01_TRINITY_DN16903_c0_g1_i1::g.216168::m.216168XP_007887163.1V9LHG6V9LHG6_CALMIunreviewedVesicle-associated membrane protein 8Callorhinchus milii (Ghost shark)106integral component of membrane [GO:0016021]; vesicle-mediated transport [GO:0016192]vesicle-mediated transport [GO:0016192]integral component of membrane [GO:0016021]GO:0016021; GO:001619224402279Transcript_02917Assembly01_TRINITY_DN17568_c0_g1::Assembly01_TRINITY_DN17568_c0_g1_i1::g.107543::m.107543XP_007907429.1V9LCF7V9LCF7_CALMIunreviewedADP-ribosylation factor 1Callorhinchus milii (Ghost shark)180intracellular [GO:0005622]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264]small GTPase mediated signal transduction [GO:0007264]GTP binding [GO:0005525]intracellular [GO:0005622]GO:0005525; GO:0005622; GO:000726424402279Transcript_02962Assembly01_TRINITY_DN17654_c0_g2::Assembly01_TRINITY_DN17654_c0_g2_i1::g.134347::m.134347XP_007888343.1V9KTR0V9KTR0_CALMIunreviewedInositol polyphosphate 1-phosphatase-like proteinCallorhinchus milii (Ghost shark)396phosphatidylinositol phosphorylation [GO:0046854]phosphatidylinositol phosphorylation [GO:0046854]GO:004685424402279Transcript_02966Assembly01_TRINITY_DN17662_c0_g2::Assembly01_TRINITY_DN17662_c0_g2_i1::g.134370::m.134370XP_007883339.1V9KTR3V9KTR3_CALMIunreviewedDnaJ (Hsp40)-like, subfamily B, member 1Callorhinchus milii (Ghost shark)347protein folding [GO:0006457]protein folding [GO:0006457]GO:000645724402279Transcript_03071Assembly01_TRINITY_DN17912_c0_g1::Assembly01_TRINITY_DN17912_c0_g1_i1::g.164461::m.164461XP_007901301.1V9L4C6V9L4C6_CALMIunreviewedC1q and tumor necrosis factor related protein 3Callorhinchus milii (Ghost shark)24624402279Transcript_03114Assembly01_TRINITY_DN18028_c0_g2::Assembly01_TRINITY_DN18028_c0_g2_i1::g.115124::m.115124XP_007891647.1V9KQP6V9KQP6_CALMIunreviewedLeukocyte cell derived chemotaxin 1Callorhinchus milii (Ghost shark)359integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_03227Assembly01_TRINITY_DN18239_c0_g1::Assembly01_TRINITY_DN18239_c0_g1_i1::g.46010::m.46010XP_007899185.1V9KDB5V9KDB5_CALMIunreviewedAcyl-CoA synthetase bubblegum family member 2Callorhinchus milii (Ghost shark)742catalytic activity [GO:0003824]; metabolic process [GO:0008152]metabolic process [GO:0008152]catalytic activity [GO:0003824]GO:0003824; GO:000815224402279Transcript_03243Assembly01_TRINITY_DN18279_c0_g1::Assembly01_TRINITY_DN18279_c0_g1_i1::g.46043::m.46043XP_007897295.1V9KN06V9KN06_CALMIunreviewedEukaryotic translation initiation factor 4E family member 1cCallorhinchus milii (Ghost shark)220cytoplasm [GO:0005737]; translation initiation factor activity [GO:0003743]translation initiation factor activity [GO:0003743]cytoplasm [GO:0005737]GO:0003743; GO:000573724402279Transcript_03258Assembly01_TRINITY_DN18312_c0_g1::Assembly01_TRINITY_DN18312_c0_g1_i2::g.78413::m.78413XP_007887565.1V9KC90V9KC90_CALMIunreviewedCentrosomal protein of 89 kDaCallorhinchus milii (Ghost shark)907centriole [GO:0005814]; chemical synaptic transmission [GO:0007268]; cilium assembly [GO:0042384]; mitochondrion organization [GO:0007005]chemical synaptic transmission [GO:0007268]; cilium assembly [GO:0042384]; mitochondrion organization [GO:0007005]centriole [GO:0005814]GO:0005814; GO:0007005; GO:0007268; GO:004238424402279Transcript_03298Assembly01_TRINITY_DN18378_c0_g1::Assembly01_TRINITY_DN18378_c0_g1_i1::g.78270::m.78270XP_007896233.1V9LJ13V9LJ13_CALMIunreviewedFatty acid-binding protein 1, liverCallorhinchus milii (Ghost shark)136lipid binding [GO:0008289]; transporter activity [GO:0005215]lipid binding [GO:0008289]; transporter activity [GO:0005215]GO:0005215; GO:000828924402279Transcript_03471Assembly01_TRINITY_DN18701_c0_g1::Assembly01_TRINITY_DN18701_c0_g1_i1::g.64169::m.64169XP_007904251.1V9L7X0V9L7X0_CALMIunreviewedDexamethasone-induced Ras-related protein 1Callorhinchus milii (Ghost shark)265intracellular [GO:0005622]; membrane [GO:0016020]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264]small GTPase mediated signal transduction [GO:0007264]GTP binding [GO:0005525]intracellular [GO:0005622]; membrane [GO:0016020]GO:0005525; GO:0005622; GO:0007264; GO:001602024402279Transcript_03474Assembly01_TRINITY_DN18705_c0_g1::Assembly01_TRINITY_DN18705_c0_g1_i1::g.64140::m.64140XP_007891025.1V9KFF9V9KFF9_CALMIunreviewedLong-chain-fatty-acid-CoA ligase 1-like proteinCallorhinchus milii (Ghost shark)698integral component of membrane [GO:0016021]; ligase activity [GO:0016874]; metabolic process [GO:0008152]metabolic process [GO:0008152]ligase activity [GO:0016874]integral component of membrane [GO:0016021]GO:0008152; GO:0016021; GO:001687424402279Transcript_03525Assembly01_TRINITY_DN18774_c0_g2::Assembly01_TRINITY_DN18774_c0_g2_i1::g.63984::m.63984XP_007882673.1V9LBJ2V9LBJ2_CALMIunreviewedTetraspaninCallorhinchus milii (Ghost shark)234integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:0016021SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU361218}; Multi-pass membrane protein {ECO:0000256|RuleBase:RU361218}.24402279Transcript_03530Assembly01_TRINITY_DN18791_c0_g1::Assembly01_TRINITY_DN18791_c0_g1_i1::g.64178::m.64178XP_007887215.1K4G020K4G020_CALMIunreviewedMediator of RNA polymerase II transcription subunit 28-like proteinCallorhinchus milii (Ghost shark)168Transcript_03543Assembly01_TRINITY_DN18807_c0_g1::Assembly01_TRINITY_DN18807_c0_g1_i1::g.98732::m.98732XP_007904817.1V9KAE8V9KAE8_CALMIunreviewedCell cycle progression protein 1-like proteinCallorhinchus milii (Ghost shark)856integral component of membrane [GO:0016021]; regulation of Rho guanyl-nucleotide exchange factor activity [GO:2001106]regulation of Rho guanyl-nucleotide exchange factor activity [GO:2001106]integral component of membrane [GO:0016021]GO:0016021; GO:200110624402279Transcript_03643Assembly01_TRINITY_DN19032_c1_g1::Assembly01_TRINITY_DN19032_c1_g1_i1::g.62938::m.62938XP_007895274.1V9LES7V9LES7_CALMIunreviewedPQ-loop repeat-containing protein 3-like proteinCallorhinchus milii (Ghost shark)218integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_03645Assembly01_TRINITY_DN19036_c0_g1::Assembly01_TRINITY_DN19036_c0_g1_i1::g.62915::m.62915XP_007909404.1K4FV40K4FV40_CALMIunreviewedNADH dehydrogenaseCallorhinchus milii (Ghost shark)130mitochondrial inner membrane [GO:0005743]; NADH dehydrogenase (ubiquinone) activity [GO:0008137]; ATP synthesis coupled electron transport [GO:0042773]ATP synthesis coupled electron transport [GO:0042773]NADH dehydrogenase (ubiquinone) activity [GO:0008137]mitochondrial inner membrane [GO:0005743]GO:0005743; GO:0008137; GO:0042773Transcript_03667Assembly01_TRINITY_DN19063_c0_g2::Assembly01_TRINITY_DN19063_c0_g2_i1::g.63104::m.63104XP_007900494.1V9KIC4V9KIC4_CALMIunreviewedTHO complex subunit 5-like proteinCallorhinchus milii (Ghost shark)70124402279Transcript_03710Assembly01_TRINITY_DN19151_c0_g1::Assembly01_TRINITY_DN19151_c0_g1_i1::g.85081::m.85081XP_007890952.1V9L302V9L302_CALMIunreviewedTransmembrane protein 165Callorhinchus milii (Ghost shark)302integral component of membrane [GO:0016021]; Golgi calcium ion transport [GO:0032472]Golgi calcium ion transport [GO:0032472]integral component of membrane [GO:0016021]GO:0016021; GO:003247224402279Transcript_03711Assembly01_TRINITY_DN19152_c0_g2::Assembly01_TRINITY_DN19152_c0_g2_i1::g.85176::m.85176XP_007883658.1V9KVW8V9KVW8_CALMIunreviewedNuclear receptor subfamily 1, group H, member 2Callorhinchus milii (Ghost shark)449nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; steroid hormone receptor activity [GO:0003707]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; transcription, DNA-templated [GO:0006351]transcription, DNA-templated [GO:0006351]sequence-specific DNA binding [GO:0043565]; steroid hormone receptor activity [GO:0003707]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]nucleus [GO:0005634]GO:0003700; GO:0003707; GO:0005634; GO:0006351; GO:0008270; GO:0043565SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004334, ECO:0000256|SAAS:SAAS00595767}.24402279Transcript_03740Assembly01_TRINITY_DN19210_c0_g2::Assembly01_TRINITY_DN19210_c0_g2_i1::g.117329::m.117329XP_007892019.1V9LDA2V9LDA2_CALMIunreviewedNTF2-related export protein 2-like proteinCallorhinchus milii (Ghost shark)114intracellular [GO:0005622]; transport [GO:0006810]transport [GO:0006810]intracellular [GO:0005622]GO:0005622; GO:000681024402279Transcript_03795Assembly01_TRINITY_DN19325_c0_g1::Assembly01_TRINITY_DN19325_c0_g1_i2::g.118546::m.118546XP_007908648.1V9KQ30V9KQ30_CALMIunreviewedCapucin-like proteinCallorhinchus milii (Ghost shark)242integral component of membrane [GO:0016021]; response to biotic stimulus [GO:0009607]response to biotic stimulus [GO:0009607]integral component of membrane [GO:0016021]GO:0009607; GO:001602124402279Transcript_03851Assembly01_TRINITY_DN19426_c0_g2::Assembly01_TRINITY_DN19426_c0_g2_i1::g.60540::m.60540XP_007909034.1V9KZJ0V9KZJ0_CALMIunreviewedBranched-chain-amino-acid aminotransferase (EC 2.6.1.42)Callorhinchus milii (Ghost shark)393L-isoleucine transaminase activity [GO:0052656]; L-leucine transaminase activity [GO:0052654]; L-valine transaminase activity [GO:0052655]; branched-chain amino acid biosynthetic process [GO:0009082]; cellular amino acid biosynthetic process [GO:0008652]branched-chain amino acid biosynthetic process [GO:0009082]; cellular amino acid biosynthetic process [GO:0008652]L-isoleucine transaminase activity [GO:0052656]; L-leucine transaminase activity [GO:0052654]; L-valine transaminase activity [GO:0052655]GO:0008652; GO:0009082; GO:0052654; GO:0052655; GO:005265624402279Transcript_03857Assembly01_TRINITY_DN19447_c0_g1::Assembly01_TRINITY_DN19447_c0_g1_i1::g.60637::m.60637XP_007898083.1K4FTP4K4FTP4_CALMIunreviewedPeroxiredoxin-1Callorhinchus milii (Ghost shark)199cell [GO:0005623]; peroxiredoxin activity [GO:0051920]; cell redox homeostasis [GO:0045454]cell redox homeostasis [GO:0045454]peroxiredoxin activity [GO:0051920]cell [GO:0005623]GO:0005623; GO:0045454; GO:0051920Transcript_03868Assembly01_TRINITY_DN19461_c0_g1::Assembly01_TRINITY_DN19461_c0_g1_i1::g.60589::m.60589XP_007891388.1A0A0K1NVN5A0A0K1NVN5_CALMIunreviewedGbX1Callorhinchus milii (Ghost shark)193heme binding [GO:0020037]; metal ion binding [GO:0046872]; oxygen binding [GO:0019825]; oxygen transporter activity [GO:0005344]heme binding [GO:0020037]; metal ion binding [GO:0046872]; oxygen binding [GO:0019825]; oxygen transporter activity [GO:0005344]GO:0005344; GO:0019825; GO:0020037; GO:004687225743544Transcript_03873Assembly01_TRINITY_DN19467_c0_g1::Assembly01_TRINITY_DN19467_c0_g1_i1::g.60484::m.60484XP_007899490.1V9KTC2V9KTC2_CALMIunreviewedGTP-binding protein SAR1bCallorhinchus milii (Ghost shark)202endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; GTP binding [GO:0005525]; intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192]intracellular protein transport [GO:0006886]; vesicle-mediated transport [GO:0016192]GTP binding [GO:0005525]endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]GO:0005525; GO:0005783; GO:0005794; GO:0006886; GO:0016021; GO:001619224402279Transcript_03877Assembly01_TRINITY_DN19471_c0_g2::Assembly01_TRINITY_DN19471_c0_g2_i1::g.60437::m.60437XP_007895342.1V9LHF8V9LHF8_CALMIunreviewedNucleoside diphosphate-linked moiety X motif 2Callorhinchus milii (Ghost shark)149bis(5'-nucleosyl)-tetraphosphatase activity [GO:0008796]bis(5'-nucleosyl)-tetraphosphatase activity [GO:0008796]GO:000879624402279Transcript_03886Assembly01_TRINITY_DN19486_c0_g1::Assembly01_TRINITY_DN19486_c0_g1_i1::g.60467::m.60467XP_007899562.1V9KQC8V9KQC8_CALMIunreviewedHeterogeneous nuclear ribonucleoprotein A/B-like proteinCallorhinchus milii (Ghost shark)353intracellular ribonucleoprotein complex [GO:0030529]; viral nucleocapsid [GO:0019013]; nucleic acid binding [GO:0003676]; nucleotide binding [GO:0000166]nucleic acid binding [GO:0003676]; nucleotide binding [GO:0000166]intracellular ribonucleoprotein complex [GO:0030529]; viral nucleocapsid [GO:0019013]GO:0000166; GO:0003676; GO:0019013; GO:003052924402279Transcript_03982Assembly01_TRINITY_DN19658_c0_g1::Assembly01_TRINITY_DN19658_c0_g1_i1::g.172913::m.172913XP_007909408.1V9KVP4V9KVP4_CALMIunreviewedTetraspaninCallorhinchus milii (Ghost shark)255integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:0016021SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU361218}; Multi-pass membrane protein {ECO:0000256|RuleBase:RU361218}.24402279Transcript_04011Assembly01_TRINITY_DN19721_c0_g1::Assembly01_TRINITY_DN19721_c0_g1_i1::g.130004::m.130004XP_007896952.1V9KQV1V9KQV1_CALMIunreviewedZinc transporter ZIP3-like proteinCallorhinchus milii (Ghost shark)315integral component of membrane [GO:0016021]; metal ion transmembrane transporter activity [GO:0046873]metal ion transmembrane transporter activity [GO:0046873]integral component of membrane [GO:0016021]GO:0016021; GO:004687324402279Transcript_04089Assembly01_TRINITY_DN19877_c0_g1::Assembly01_TRINITY_DN19877_c0_g1_i2::g.171095::m.171095XP_007891863.1V9LC61V9LC61_CALMIunreviewedNucleoside diphosphate kinase 4Callorhinchus milii (Ghost shark)188nucleoside diphosphate kinase activity [GO:0004550]; CTP biosynthetic process [GO:0006241]; GTP biosynthetic process [GO:0006183]; UTP biosynthetic process [GO:0006228]CTP biosynthetic process [GO:0006241]; GTP biosynthetic process [GO:0006183]; UTP biosynthetic process [GO:0006228]nucleoside diphosphate kinase activity [GO:0004550]GO:0004550; GO:0006183; GO:0006228; GO:000624124402279Transcript_04106Assembly01_TRINITY_DN19920_c0_g1::Assembly01_TRINITY_DN19920_c0_g1_i1::g.105159::m.105159XP_007884857.1V9LFC9V9LFC9_CALMIunreviewedRab-like protein 2B (Fragment)Callorhinchus milii (Ghost shark)187intracellular [GO:0005622]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264]small GTPase mediated signal transduction [GO:0007264]GTP binding [GO:0005525]intracellular [GO:0005622]GO:0005525; GO:0005622; GO:000726424402279Transcript_04249Assembly01_TRINITY_DN20163_c0_g1::Assembly01_TRINITY_DN20163_c0_g1_i1::g.178513::m.178513XP_007889481.1K4GG93K4GG93_CALMIunreviewedArachidonate 5-lipoxygenase-activating proteinCallorhinchus milii (Ghost shark)158integral component of membrane [GO:0016021]; enzyme activator activity [GO:0008047]; leukotriene metabolic process [GO:0006691]leukotriene metabolic process [GO:0006691]enzyme activator activity [GO:0008047]integral component of membrane [GO:0016021]GO:0006691; GO:0008047; GO:0016021Transcript_04259Assembly01_TRINITY_DN20182_c0_g3::Assembly01_TRINITY_DN20182_c0_g3_i1::g.178349::m.178349XP_007905432.1V9KS26V9KS26_CALMIunreviewedAN1-type zinc finger protein 6-like proteinCallorhinchus milii (Ghost shark)243DNA binding [GO:0003677]; zinc ion binding [GO:0008270]DNA binding [GO:0003677]; zinc ion binding [GO:0008270]GO:0003677; GO:000827024402279Transcript_04336Assembly01_TRINITY_DN20311_c0_g1::Assembly01_TRINITY_DN20311_c0_g1_i1::g.17377::m.17377XP_007894405.1V9KIJ8V9KIJ8_CALMIunreviewedSpeckle-type POZ protein-like proteinCallorhinchus milii (Ghost shark)39224402279Transcript_04389Assembly01_TRINITY_DN20396_c0_g1::Assembly01_TRINITY_DN20396_c0_g1_i1::g.17723::m.17723XP_007889274.1V9KFG2V9KFG2_CALMIunreviewedSerine/threonine-protein phosphatase 2A regulatory subunit B'' subunit betaCallorhinchus milii (Ghost shark)470calcium ion binding [GO:0005509]calcium ion binding [GO:0005509]GO:000550924402279Transcript_04403Assembly01_TRINITY_DN20419_c0_g1::Assembly01_TRINITY_DN20419_c0_g1_i1::g.189356::m.189356XP_007895676.1V9KQR9V9KQR9_CALMIunreviewedAromatic-L-amino-acid decarboxylaseCallorhinchus milii (Ghost shark)480carboxy-lyase activity [GO:0016831]; pyridoxal phosphate binding [GO:0030170]; cellular amino acid metabolic process [GO:0006520]cellular amino acid metabolic process [GO:0006520]carboxy-lyase activity [GO:0016831]; pyridoxal phosphate binding [GO:0030170]GO:0006520; GO:0016831; GO:003017024402279Transcript_04416Assembly01_TRINITY_DN20437_c0_g1::Assembly01_TRINITY_DN20437_c0_g1_i1::g.189540::m.189540XP_007897609.1V9L8X1V9L8X1_CALMIunreviewedSynaptophysin-like 2bCallorhinchus milii (Ghost shark)245integral component of membrane [GO:0016021]; synaptic vesicle [GO:0008021]; transporter activity [GO:0005215]transporter activity [GO:0005215]integral component of membrane [GO:0016021]; synaptic vesicle [GO:0008021]GO:0005215; GO:0008021; GO:001602124402279Transcript_04453Assembly01_TRINITY_DN20516_c0_g1::Assembly01_TRINITY_DN20516_c0_g1_i1::g.128699::m.128699XP_007896338.1V9KRF6V9KRF6_CALMIunreviewedOleoyl-ACP hydrolaseCallorhinchus milii (Ghost shark)254integral component of membrane [GO:0016021]; hydrolase activity, acting on ester bonds [GO:0016788]; biosynthetic process [GO:0009058]biosynthetic process [GO:0009058]hydrolase activity, acting on ester bonds [GO:0016788]integral component of membrane [GO:0016021]GO:0009058; GO:0016021; GO:001678824402279Transcript_04510Assembly01_TRINITY_DN20614_c0_g1::Assembly01_TRINITY_DN20614_c0_g1_i1::g.4320::m.4320XP_007898198.1V9KXQ3V9KXQ3_CALMIunreviewedS-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) (5'-methylthioadenosine phosphorylase)MTAPCallorhinchus milii (Ghost shark)276cytoplasm [GO:0005737]; nucleus [GO:0005634]; S-methyl-5-thioadenosine phosphorylase activity [GO:0017061]; L-methionine biosynthetic process from methylthioadenosine [GO:0019509]; purine ribonucleoside salvage [GO:0006166]L-methionine biosynthetic process from methylthioadenosine [GO:0019509]; purine ribonucleoside salvage [GO:0006166]S-methyl-5-thioadenosine phosphorylase activity [GO:0017061]cytoplasm [GO:0005737]; nucleus [GO:0005634]GO:0005634; GO:0005737; GO:0006166; GO:0017061; GO:0019509SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_03155}. Nucleus {ECO:0000256|HAMAP-Rule:MF_03155}.24402279Transcript_04517Assembly01_TRINITY_DN2061_c0_g3::Assembly01_TRINITY_DN2061_c0_g3_i1::g.32464::m.32464XP_007891090.1V9KY29V9KY29_CALMIunreviewedLymphokine-activated killer T-cell-originated protein kinase-like proteinCallorhinchus milii (Ghost shark)326ATP binding [GO:0005524]; protein kinase activity [GO:0004672]ATP binding [GO:0005524]; protein kinase activity [GO:0004672]GO:0004672; GO:000552424402279Transcript_04527Assembly01_TRINITY_DN20633_c0_g1::Assembly01_TRINITY_DN20633_c0_g1_i1::g.4588::m.4588XP_007883150.1V9KD52V9KD52_CALMIunreviewedZinc finger protein ZPR1Callorhinchus milii (Ghost shark)442zinc ion binding [GO:0008270]zinc ion binding [GO:0008270]GO:000827024402279Transcript_04679Assembly01_TRINITY_DN20894_c0_g1::Assembly01_TRINITY_DN20894_c0_g1_i1::g.142293::m.142293XP_007900424.1V9KYY0V9KYY0_CALMIunreviewedE3 ubiquitin-protein ligase RNF34Callorhinchus milii (Ghost shark)346ligase activity [GO:0016874]; zinc ion binding [GO:0008270]ligase activity [GO:0016874]; zinc ion binding [GO:0008270]GO:0008270; GO:001687424402279Transcript_04837Assembly01_TRINITY_DN21295_c0_g1::Assembly01_TRINITY_DN21295_c0_g1_i1::g.149069::m.149069XP_007898664.1K4G095K4G095_CALMIunreviewedProline-rich protein 15-like proteinCallorhinchus milii (Ghost shark)108Transcript_04874Assembly01_TRINITY_DN21430_c0_g2::Assembly01_TRINITY_DN21430_c0_g2_i2::g.18470::m.18470XP_007888599.1V9L0W3V9L0W3_CALMIunreviewedNADH dehydrogenase (Ubiquinone) 1 alpha subcomplex assembly factor 3Callorhinchus milii (Ghost shark)17924402279Transcript_04918Assembly01_TRINITY_DN21553_c0_g1::Assembly01_TRINITY_DN21553_c0_g1_i1::g.78650::m.78650XP_007888842.1V9LBX4V9LBX4_CALMIunreviewedPituitary tumor-transforming 1 protein-interacting proteinCallorhinchus milii (Ghost shark)174integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_04966Assembly01_TRINITY_DN21701_c0_g1::Assembly01_TRINITY_DN21701_c0_g1_i1::g.206294::m.206294XP_007889924.1V9KNL3V9KNL3_CALMIunreviewedSAM and SH3 domain-containing 3Callorhinchus milii (Ghost shark)37824402279Transcript_04989Assembly01_TRINITY_DN21761_c0_g1::Assembly01_TRINITY_DN21761_c0_g1_i1::g.206317::m.206317XP_007893038.1V9LCV7V9LCV7_CALMIunreviewedcAMP-dependent protein kinase inhibitor beta-like proteinCallorhinchus milii (Ghost shark)75cAMP-dependent protein kinase inhibitor activity [GO:0004862]; kinase activity [GO:0016301]cAMP-dependent protein kinase inhibitor activity [GO:0004862]; kinase activity [GO:0016301]GO:0004862; GO:001630124402279Transcript_04990Assembly01_TRINITY_DN21763_c0_g1::Assembly01_TRINITY_DN21763_c0_g1_i1::g.206397::m.206397XP_007906110.1V9L1D6V9L1D6_CALMIunreviewedFanconi anemia-associated protein of 24 kDa-like proteinCallorhinchus milii (Ghost shark)221Fanconi anaemia nuclear complex [GO:0043240]; DNA repair [GO:0006281]DNA repair [GO:0006281]Fanconi anaemia nuclear complex [GO:0043240]GO:0006281; GO:004324024402279Transcript_05181Assembly01_TRINITY_DN22341_c0_g1::Assembly01_TRINITY_DN22341_c0_g1_i1::g.165651::m.165651XP_007891566.1V9KRD5V9KRD5_CALMIunreviewedSorting nexinCallorhinchus milii (Ghost shark)406intracellular [GO:0005622]; phosphatidylinositol binding [GO:0035091]; intracellular protein transport [GO:0006886]intracellular protein transport [GO:0006886]phosphatidylinositol binding [GO:0035091]intracellular [GO:0005622]GO:0005622; GO:0006886; GO:003509124402279Transcript_05282Assembly01_TRINITY_DN22642_c0_g1::Assembly01_TRINITY_DN22642_c0_g1_i1::g.177488::m.177488XP_007904735.1V9KTE0V9KTE0_CALMIunreviewedMeiosis-specific nuclear structural protein 1Callorhinchus milii (Ghost shark)49524402279Transcript_05336Assembly01_TRINITY_DN22768_c0_g1::Assembly01_TRINITY_DN22768_c0_g1_i1::g.35237::m.35237XP_007885241.1V9L180V9L180_CALMIunreviewedATP synthase mitochondrial F1 complex assembly factor 1Callorhinchus milii (Ghost shark)319mitochondrion [GO:0005739]; protein complex assembly [GO:0006461]protein complex assembly [GO:0006461]mitochondrion [GO:0005739]GO:0005739; GO:000646124402279Transcript_05388Assembly01_TRINITY_DN22914_c0_g1::Assembly01_TRINITY_DN22914_c0_g1_i1::g.208651::m.208651XP_007894854.1V9KXQ5V9KXQ5_CALMIunreviewedProtein FRA10AC1-like proteinCallorhinchus milii (Ghost shark)33124402279Transcript_05426Assembly01_TRINITY_DN23039_c0_g1::Assembly01_TRINITY_DN23039_c0_g1_i1::g.143582::m.143582XP_007888512.1V9KCG3V9KCG3_CALMIunreviewedProtein ariadne-2-like proteinCallorhinchus milii (Ghost shark)490ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]GO:0004842; GO:000827024402279Transcript_05482Assembly01_TRINITY_DN23245_c0_g2::Assembly01_TRINITY_DN23245_c0_g2_i1::g.98123::m.98123XP_007882692.1V9KXJ2V9KXJ2_CALMIunreviewedHMBLR (Fragment)Callorhinchus milii (Ghost shark)280zinc ion binding [GO:0008270]zinc ion binding [GO:0008270]GO:000827024402279Transcript_05517Assembly01_TRINITY_DN23353_c0_g1::Assembly01_TRINITY_DN23353_c0_g1_i1::g.185080::m.185080XP_007902024.1V9KPY0V9KPY0_CALMIunreviewedtRNA (guanine(37)-N1)-methyltransferase (EC 2.1.1.228) (M1G-methyltransferase) (tRNA [GM37] methyltransferase) (tRNA methyltransferase 5 homolog)TRMT5 TRM5Callorhinchus milii (Ghost shark)497mitochondrial matrix [GO:0005759]; nucleus [GO:0005634]; tRNA (guanine(37)-N(1))-methyltransferase activity [GO:0052906]tRNA (guanine(37)-N(1))-methyltransferase activity [GO:0052906]mitochondrial matrix [GO:0005759]; nucleus [GO:0005634]GO:0005634; GO:0005759; GO:0052906SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|SAAS:SAAS00534542}.; SUBCELLULAR LOCATION: Mitochondrion matrix {ECO:0000256|HAMAP-Rule:MF_03152}. Nucleus {ECO:0000256|HAMAP-Rule:MF_03152}. Cytoplasm {ECO:0000256|HAMAP-Rule:MF_03152}. Note=Predominantly in the mitochondria and in the nucleus. {ECO:0000256|HAMAP-Rule:MF_03152}.; SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00534555}.24402279Transcript_05520Assembly01_TRINITY_DN23357_c0_g1::Assembly01_TRINITY_DN23357_c0_g1_i1::g.185135::m.185135XP_007900441.1V9KXA2V9KXA2_CALMIunreviewedActin-related protein 2/3 complex subunit 3 (Arp2/3 complex 21 kDa subunit)Callorhinchus milii (Ghost shark)178Arp2/3 protein complex [GO:0005885]; cytoplasm [GO:0005737]; Arp2/3 complex-mediated actin nucleation [GO:0034314]Arp2/3 complex-mediated actin nucleation [GO:0034314]Arp2/3 protein complex [GO:0005885]; cytoplasm [GO:0005737]GO:0005737; GO:0005885; GO:0034314SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton {ECO:0000256|PIRNR:PIRNR016315}.24402279Transcript_05553Assembly01_TRINITY_DN23432_c0_g2::Assembly01_TRINITY_DN23432_c0_g2_i1::g.12535::m.12535XP_007886492.1V9LKJ7V9LKJ7_CALMIunreviewedProtein LBH-like proteinCallorhinchus milii (Ghost shark)12024402279Transcript_05595Assembly01_TRINITY_DN23493_c0_g1::Assembly01_TRINITY_DN23493_c0_g1_i1::g.12431::m.12431XP_007908496.1V9KGH0V9KGH0_CALMIunreviewedPutative hydrolase PNKDCallorhinchus milii (Ghost shark)353hydroxyacylglutathione hydrolase activity [GO:0004416]; methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [GO:0019243]methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione [GO:0019243]hydroxyacylglutathione hydrolase activity [GO:0004416]GO:0004416; GO:001924324402279Transcript_05730Assembly01_TRINITY_DN23722_c0_g2::Assembly01_TRINITY_DN23722_c0_g2_i1::g.153361::m.153361XP_007899690.1V9KGA7V9KGA7_CALMIunreviewedPhosphoethanolamine/phosphocholine phosphatase-like proteinCallorhinchus milii (Ghost shark)264phosphatase activity [GO:0016791]phosphatase activity [GO:0016791]GO:001679124402279Transcript_05741Assembly01_TRINITY_DN23743_c0_g2::Assembly01_TRINITY_DN23743_c0_g2_i1::g.153259::m.153259XP_007899245.1V9KXP7V9KXP7_CALMIunreviewedUV excision repair protein RAD23-like BCallorhinchus milii (Ghost shark)382nucleus [GO:0005634]; damaged DNA binding [GO:0003684]; nucleotide-excision repair [GO:0006289]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]nucleotide-excision repair [GO:0006289]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]damaged DNA binding [GO:0003684]nucleus [GO:0005634]GO:0003684; GO:0005634; GO:0006289; GO:004316124402279Transcript_05807Assembly01_TRINITY_DN23852_c0_g1::Assembly01_TRINITY_DN23852_c0_g1_i3::g.219403::m.219403XP_007905173.1V9KYM4V9KYM4_CALMIunreviewedUncharacterized proteinCallorhinchus milii (Ghost shark)32324402279Transcript_05914Assembly01_TRINITY_DN24035_c0_g2::Assembly01_TRINITY_DN24035_c0_g2_i1::g.205140::m.205140XP_007910778.1V9LF49V9LF49_CALMIunreviewedTranscription elongation factor 1-like proteinCallorhinchus milii (Ghost shark)83translation elongation factor activity [GO:0003746]translation elongation factor activity [GO:0003746]GO:000374624402279Transcript_05915Assembly01_TRINITY_DN24038_c0_g1::Assembly01_TRINITY_DN24038_c0_g1_i1::g.204977::m.204977XP_007900308.1V9L916V9L916_CALMIunreviewedTHAP domain-containing protein 3Callorhinchus milii (Ghost shark)221nucleic acid binding [GO:0003676]nucleic acid binding [GO:0003676]GO:000367624402279Transcript_05945Assembly01_TRINITY_DN24098_c0_g2::Assembly01_TRINITY_DN24098_c0_g2_i1::g.205250::m.205250XP_007888064.1V9KI57V9KI57_CALMIunreviewedNostrin-like proteinCallorhinchus milii (Ghost shark)552signal transduction [GO:0007165]signal transduction [GO:0007165]GO:000716524402279Transcript_05982Assembly01_TRINITY_DN24139_c0_g1::Assembly01_TRINITY_DN24139_c0_g1_i1::g.45821::m.45821XP_007903762.1V9LBB3V9LBB3_CALMIunreviewedProtein-lysine N-methyltransferase N6AMT2 (EC 2.1.1.-) (N(6)-adenine-specific DNA methyltransferase 2)N6AMT2Callorhinchus milii (Ghost shark)214cytoplasm [GO:0005737]; protein-lysine N-methyltransferase activity [GO:0016279]protein-lysine N-methyltransferase activity [GO:0016279]cytoplasm [GO:0005737]GO:0005737; GO:0016279SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_03187}.24402279Transcript_05984Assembly01_TRINITY_DN24140_c0_g1::Assembly01_TRINITY_DN24140_c0_g1_i1::g.45818::m.45818XP_007889563.1K4FS12K4FS12_CALMIunreviewedC-terminal-binding protein 1-like isoform 2Callorhinchus milii (Ghost shark)448NAD binding [GO:0051287]; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616]NAD binding [GO:0051287]; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616]GO:0016616; GO:0051287Transcript_05997Assembly01_TRINITY_DN24180_c0_g1::Assembly01_TRINITY_DN24180_c0_g1_i1::g.45557::m.45557XP_007894115.1V9KK18V9KK18_CALMIunreviewedVascular endothelial growth factor CCallorhinchus milii (Ghost shark)425membrane [GO:0016020]membrane [GO:0016020]GO:001602024402279Transcript_06022Assembly01_TRINITY_DN24225_c0_g1::Assembly01_TRINITY_DN24225_c0_g1_i2::g.166364::m.166364XP_007882748.1V9KVY2V9KVY2_CALMIunreviewedNucleoside diphosphate-linked moiety X motif 22-like proteinCallorhinchus milii (Ghost shark)29624402279Transcript_06068Assembly01_TRINITY_DN24284_c0_g2::Assembly01_TRINITY_DN24284_c0_g2_i2::g.166123::m.166123XP_007904939.1V9KLM7V9KLM7_CALMIunreviewedSmad nuclear interacting protein 1Callorhinchus milii (Ghost shark)35724402279Transcript_06124Assembly01_TRINITY_DN24384_c0_g1::Assembly01_TRINITY_DN24384_c0_g1_i1::g.152048::m.152048XP_007883492.1V9L6C2V9L6C2_CALMIunreviewedComplement C1q tumor necrosis factor-related protein 5Callorhinchus milii (Ghost shark)24524402279Transcript_06141Assembly01_TRINITY_DN24418_c0_g2::Assembly01_TRINITY_DN24418_c0_g2_i1::g.46472::m.46472XP_007899991.1K4GJI7K4GJI7_CALMIunreviewedCatechol-O-methyltransferase isoform 1Callorhinchus milii (Ghost shark)262catechol O-methyltransferase activity [GO:0016206]; magnesium ion binding [GO:0000287]; catecholamine metabolic process [GO:0006584]; neurotransmitter catabolic process [GO:0042135]catecholamine metabolic process [GO:0006584]; neurotransmitter catabolic process [GO:0042135]catechol O-methyltransferase activity [GO:0016206]; magnesium ion binding [GO:0000287]GO:0000287; GO:0006584; GO:0016206; GO:0042135Transcript_06159Assembly01_TRINITY_DN24442_c0_g1::Assembly01_TRINITY_DN24442_c0_g1_i2::g.46551::m.46551XP_007893568.1V9KBS7V9KBS7_CALMIunreviewedCholinephosphotransferase 1Callorhinchus milii (Ghost shark)384integral component of membrane [GO:0016021]; phosphotransferase activity, for other substituted phosphate groups [GO:0016780]; phospholipid biosynthetic process [GO:0008654]phospholipid biosynthetic process [GO:0008654]phosphotransferase activity, for other substituted phosphate groups [GO:0016780]integral component of membrane [GO:0016021]GO:0008654; GO:0016021; GO:001678024402279Transcript_06215Assembly01_TRINITY_DN24536_c0_g1::Assembly01_TRINITY_DN24536_c0_g1_i1::g.62009::m.62009XP_007886968.1K4FSP8K4FSP8_CALMIunreviewedMitochondrial 39S ribosomal protein L27Callorhinchus milii (Ghost shark)150ribosome [GO:0005840]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412]translation [GO:0006412]structural constituent of ribosome [GO:0003735]ribosome [GO:0005840]GO:0003735; GO:0005840; GO:0006412Transcript_06250Assembly01_TRINITY_DN24584_c0_g1::Assembly01_TRINITY_DN24584_c0_g1_i1::g.62368::m.62368XP_007883306.1V9KNF9V9KNF9_CALMIunreviewedFour and a half LIM domains 2Callorhinchus milii (Ghost shark)279zinc ion binding [GO:0008270]zinc ion binding [GO:0008270]GO:000827024402279Transcript_06252Assembly01_TRINITY_DN24588_c0_g1::Assembly01_TRINITY_DN24588_c0_g1_i1::g.61996::m.61996XP_007905294.1V9KE93V9KE93_CALMIunreviewedLow-density lipoprotein receptorCallorhinchus milii (Ghost shark)873integral component of membrane [GO:0016021]; calcium ion binding [GO:0005509]calcium ion binding [GO:0005509]integral component of membrane [GO:0016021]GO:0005509; GO:001602124402279Transcript_06361Assembly01_TRINITY_DN24764_c0_g1::Assembly01_TRINITY_DN24764_c0_g1_i1::g.32759::m.32759XP_007885364.1V9KFV9V9KFV9_CALMIunreviewedZinc finger protein 326-like proteinCallorhinchus milii (Ghost shark)568nucleus [GO:0005634]; DNA binding [GO:0003677]DNA binding [GO:0003677]nucleus [GO:0005634]GO:0003677; GO:000563424402279Transcript_06367Assembly01_TRINITY_DN24769_c0_g1::Assembly01_TRINITY_DN24769_c0_g1_i1::g.32786::m.32786XP_007909061.1V9KAK7V9KAK7_CALMIunreviewedRNA polymerase-associated protein CTR9-like proteinCallorhinchus milii (Ghost shark)1168Cdc73/Paf1 complex [GO:0016593]; histone modification [GO:0016570]; regulation of transcription, DNA-templated [GO:0006355]histone modification [GO:0016570]; regulation of transcription, DNA-templated [GO:0006355]Cdc73/Paf1 complex [GO:0016593]GO:0006355; GO:0016570; GO:001659324402279Transcript_06405Assembly01_TRINITY_DN24834_c0_g2::Assembly01_TRINITY_DN24834_c0_g2_i1::g.62634::m.62634XP_007899115.1V9K875V9K875_CALMIunreviewedRho-associated protein kinase (EC 2.7.11.1)Callorhinchus milii (Ghost shark)1362cytoskeleton [GO:0005856]; ATP binding [GO:0005524]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]; actin cytoskeleton organization [GO:0030036]; regulation of establishment of cell polarity [GO:2000114]; regulation of stress fiber assembly [GO:0051492]; Rho protein signal transduction [GO:0007266]actin cytoskeleton organization [GO:0030036]; regulation of establishment of cell polarity [GO:2000114]; regulation of stress fiber assembly [GO:0051492]; Rho protein signal transduction [GO:0007266]ATP binding [GO:0005524]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]cytoskeleton [GO:0005856]GO:0004674; GO:0005524; GO:0005856; GO:0007266; GO:0030036; GO:0046872; GO:0051492; GO:200011424402279Transcript_06535Assembly01_TRINITY_DN25151_c0_g2::Assembly01_TRINITY_DN25151_c0_g2_i1::g.164081::m.164081XP_007891929.1V9L7Y0V9L7Y0_CALMIunreviewed5-demethoxyubiquinone hydroxylase, mitochondrial (DMQ hydroxylase) (EC 1.14.13.-) (Timing protein clk-1 homolog) (Ubiquinone biosynthesis monooxygenase COQ7)COQ7Callorhinchus milii (Ghost shark)228extrinsic component of mitochondrial inner membrane [GO:0031314]; metal ion binding [GO:0046872]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]; ubiquinone biosynthetic process [GO:0006744]ubiquinone biosynthetic process [GO:0006744]metal ion binding [GO:0046872]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [GO:0016709]extrinsic component of mitochondrial inner membrane [GO:0031314]GO:0006744; GO:0016709; GO:0031314; GO:0046872SUBCELLULAR LOCATION: Mitochondrion inner membrane {ECO:0000256|HAMAP-Rule:MF_03194}; Peripheral membrane protein {ECO:0000256|HAMAP-Rule:MF_03194}; Matrix side {ECO:0000256|HAMAP-Rule:MF_03194}.24402279Transcript_06562Assembly01_TRINITY_DN25221_c0_g1::Assembly01_TRINITY_DN25221_c0_g1_i1::g.21357::m.21357XP_007883978.1K4FSS4K4FSS4_CALMIunreviewedNADH dehydrogenase (Ubiquinone) 1 beta subcomplex, 3Callorhinchus milii (Ghost shark)107integral component of membrane [GO:0016021]; mitochondrial respiratory chain complex I [GO:0005747]; electron transport chain [GO:0022900]electron transport chain [GO:0022900]integral component of membrane [GO:0016021]; mitochondrial respiratory chain complex I [GO:0005747]GO:0005747; GO:0016021; GO:0022900Transcript_06573Assembly01_TRINITY_DN25246_c0_g1::Assembly01_TRINITY_DN25246_c0_g1_i1::g.21223::m.21223XP_007884847.1V9KWE6V9KWE6_CALMIunreviewedMetaxin 1Callorhinchus milii (Ghost shark)317integral component of membrane [GO:0016021]; mitochondrial outer membrane [GO:0005741]; protein targeting to mitochondrion [GO:0006626]protein targeting to mitochondrion [GO:0006626]integral component of membrane [GO:0016021]; mitochondrial outer membrane [GO:0005741]GO:0005741; GO:0006626; GO:001602124402279Transcript_06575Assembly01_TRINITY_DN25248_c0_g1::Assembly01_TRINITY_DN25248_c0_g1_i1::g.21282::m.21282XP_007907141.1V9KLY4V9KLY4_CALMIunreviewedLa ribonucleoprotein domain family, member 6Callorhinchus milii (Ghost shark)491intracellular ribonucleoprotein complex [GO:0030529]; nucleus [GO:0005634]; viral nucleocapsid [GO:0019013]; nucleotide binding [GO:0000166]; RNA binding [GO:0003723]; RNA processing [GO:0006396]RNA processing [GO:0006396]nucleotide binding [GO:0000166]; RNA binding [GO:0003723]intracellular ribonucleoprotein complex [GO:0030529]; nucleus [GO:0005634]; viral nucleocapsid [GO:0019013]GO:0000166; GO:0003723; GO:0005634; GO:0006396; GO:0019013; GO:003052924402279Transcript_06603Assembly01_TRINITY_DN25322_c0_g1::Assembly01_TRINITY_DN25322_c0_g1_i1::g.192971::m.192971XP_007888439.1V9L336V9L336_CALMIunreviewedLipoma HMGIC fusion partner-like 4Callorhinchus milii (Ghost shark)300integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_06711Assembly01_TRINITY_DN25536_c0_g1::Assembly01_TRINITY_DN25536_c0_g1_i1::g.172094::m.172094XP_007896410.1V9KH74V9KH74_CALMIunreviewedLamin-B receptorCallorhinchus milii (Ghost shark)611integral component of membrane [GO:0016021]; oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor [GO:0016628]oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor [GO:0016628]integral component of membrane [GO:0016021]GO:0016021; GO:001662824402279Transcript_06795Assembly01_TRINITY_DN25696_c0_g1::Assembly01_TRINITY_DN25696_c0_g1_i1::g.118017::m.118017XP_007903569.1V9KF74V9KF74_CALMIunreviewedProteinase-activated receptor 1Callorhinchus milii (Ghost shark)423integral component of membrane [GO:0016021]; thrombin receptor activity [GO:0015057]; blood coagulation [GO:0007596]blood coagulation [GO:0007596]thrombin receptor activity [GO:0015057]integral component of membrane [GO:0016021]GO:0007596; GO:0015057; GO:001602124402279Transcript_06834Assembly01_TRINITY_DN25768_c0_g1::Assembly01_TRINITY_DN25768_c0_g1_i1::g.220322::m.220322XP_007898378.1V9LGQ0V9LGQ0_CALMIunreviewedAnaphase-promoting complex subunit CDC26Callorhinchus milii (Ghost shark)83anaphase-promoting complex [GO:0005680]; anaphase-promoting complex-dependent catabolic process [GO:0031145]; regulation of mitotic metaphase/anaphase transition [GO:0030071]anaphase-promoting complex-dependent catabolic process [GO:0031145]; regulation of mitotic metaphase/anaphase transition [GO:0030071]anaphase-promoting complex [GO:0005680]GO:0005680; GO:0030071; GO:003114524402279Transcript_06846Assembly01_TRINITY_DN25793_c0_g1::Assembly01_TRINITY_DN25793_c0_g1_i1::g.220325::m.220325XP_007887616.1V9KWL5V9KWL5_CALMIunreviewedE3 ubiquitin-protein ligase (EC 6.3.2.-)Callorhinchus milii (Ghost shark)282nucleus [GO:0005634]; ligase activity [GO:0016874]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]; multicellular organism development [GO:0007275]; ubiquitin-dependent protein catabolic process [GO:0006511]multicellular organism development [GO:0007275]; ubiquitin-dependent protein catabolic process [GO:0006511]ligase activity [GO:0016874]; ubiquitin-protein transferase activity [GO:0004842]; zinc ion binding [GO:0008270]nucleus [GO:0005634]GO:0004842; GO:0005634; GO:0006511; GO:0007275; GO:0008270; GO:001687424402279Transcript_06885Assembly01_TRINITY_DN25900_c0_g1::Assembly01_TRINITY_DN25900_c0_g1_i1::g.125711::m.125711XP_007908144.1V9L641V9L641_CALMIunreviewedTetraspaninCallorhinchus milii (Ghost shark)239integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:0016021SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU361218}; Multi-pass membrane protein {ECO:0000256|RuleBase:RU361218}.24402279Transcript_06893Assembly01_TRINITY_DN25920_c0_g2::Assembly01_TRINITY_DN25920_c0_g2_i1::g.125700::m.125700XP_007895189.1V9L263V9L263_CALMIunreviewedUncharacterized proteinCallorhinchus milii (Ghost shark)119integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_06908Assembly01_TRINITY_DN25946_c0_g1::Assembly01_TRINITY_DN25946_c0_g1_i1::g.125631::m.125631XP_007901236.1V9KZG1V9KZG1_CALMIunreviewedOrganic solute transporter subunit alpha-like proteinCallorhinchus milii (Ghost shark)337integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_06939Assembly01_TRINITY_DN26003_c0_g1::Assembly01_TRINITY_DN26003_c0_g1_i1::g.64421::m.64421XP_007886370.1V9KFY7V9KFY7_CALMIunreviewedGuanine nucleotide-binding protein subunit gammaCallorhinchus milii (Ghost shark)71heterotrimeric G-protein complex [GO:0005834]; signal transducer activity [GO:0004871]; G-protein coupled receptor signaling pathway [GO:0007186]G-protein coupled receptor signaling pathway [GO:0007186]signal transducer activity [GO:0004871]heterotrimeric G-protein complex [GO:0005834]GO:0004871; GO:0005834; GO:0007186SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|RuleBase:RU004973}; Lipid-anchor {ECO:0000256|RuleBase:RU004973}; Cytoplasmic side {ECO:0000256|RuleBase:RU004973}.24402279Transcript_06977Assembly01_TRINITY_DN26076_c0_g1::Assembly01_TRINITY_DN26076_c0_g1_i2::g.64336::m.64336XP_007899012.1V9K8R1V9K8R1_CALMIunreviewedUncharacterized proteinCallorhinchus milii (Ghost shark)49324402279Transcript_07001Assembly01_TRINITY_DN26121_c0_g1::Assembly01_TRINITY_DN26121_c0_g1_i1::g.24501::m.24501XP_007909133.1V9LBZ9V9LBZ9_CALMIunreviewedUncharacterized protein (Fragment)Callorhinchus milii (Ghost shark)25024402279Transcript_07023Assembly01_TRINITY_DN26179_c0_g1::Assembly01_TRINITY_DN26179_c0_g1_i1::g.24536::m.24536XP_007909066.1V9LB31V9LB31_CALMIunreviewedGuanylate cyclase activator 1A (Retina)Callorhinchus milii (Ghost shark)188calcium ion binding [GO:0005509]; polysaccharide catabolic process [GO:0000272]polysaccharide catabolic process [GO:0000272]calcium ion binding [GO:0005509]GO:0000272; GO:000550924402279Transcript_07025Assembly01_TRINITY_DN26181_c0_g1::Assembly01_TRINITY_DN26181_c0_g1_i3::g.24448::m.24448XP_007902540.1V9KZW0V9KZW0_CALMIunreviewed39S ribosomal protein L45, mitochondrial-like proteinCallorhinchus milii (Ghost shark)318ribosome [GO:0005840]ribosome [GO:0005840]GO:000584024402279Transcript_07064Assembly01_TRINITY_DN26242_c0_g2::Assembly01_TRINITY_DN26242_c0_g2_i1::g.50747::m.50747XP_007902238.1V9KFJ8V9KFJ8_CALMIunreviewedDNA mismatch repair protein Mlh1Callorhinchus milii (Ghost shark)748ATP binding [GO:0005524]; mismatched DNA binding [GO:0030983]; mismatch repair [GO:0006298]mismatch repair [GO:0006298]ATP binding [GO:0005524]; mismatched DNA binding [GO:0030983]GO:0005524; GO:0006298; GO:003098324402279Transcript_07233Assembly01_TRINITY_DN26586_c0_g1::Assembly01_TRINITY_DN26586_c0_g1_i1::g.54424::m.54424XP_007884720.1V9LDX8V9LDX8_CALMIunreviewedN-alpha-acetyltransferase 40, NatD catalytic subunit-like protein (Fragment)Callorhinchus milii (Ghost shark)229N-acetyltransferase activity [GO:0008080]N-acetyltransferase activity [GO:0008080]GO:000808024402279Transcript_07235Assembly01_TRINITY_DN26587_c0_g1::Assembly01_TRINITY_DN26587_c0_g1_i1::g.54471::m.54471XP_007906471.1V9LF85V9LF85_CALMIunreviewedFibroblast growth factor (FGF)Callorhinchus milii (Ghost shark)160extracellular region [GO:0005576]; fibroblast growth factor receptor signaling pathway [GO:0008543]fibroblast growth factor receptor signaling pathway [GO:0008543]extracellular region [GO:0005576]GO:0005576; GO:000854324402279Transcript_07248Assembly01_TRINITY_DN26616_c0_g1::Assembly01_TRINITY_DN26616_c0_g1_i1::g.203439::m.203439XP_007903235.1V9L796V9L796_CALMIunreviewedSH3 domain-binding glutamic acid-rich-like proteinCallorhinchus milii (Ghost shark)10824402279Transcript_07275Assembly01_TRINITY_DN26659_c0_g1::Assembly01_TRINITY_DN26659_c0_g1_i1::g.203344::m.203344XP_007904736.1V9KTF8V9KTF8_CALMIunreviewedTransmembrane protein 192-like proteinCallorhinchus milii (Ghost shark)258integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_07309Assembly01_TRINITY_DN26721_c0_g1::Assembly01_TRINITY_DN26721_c0_g1_i1::g.138079::m.138079XP_007902389.1V9LBM7V9LBM7_CALMIunreviewedUncharacterized proteinCallorhinchus milii (Ghost shark)10024402279Transcript_07322Assembly01_TRINITY_DN26742_c0_g1::Assembly01_TRINITY_DN26742_c0_g1_i3::g.137957::m.137957XP_007890321.1V9KQ76V9KQ76_CALMIunreviewedTrifunctional nucleotide phosphoesterase protein YfkN-like protein (Fragment)Callorhinchus milii (Ghost shark)539hydrolase activity [GO:0016787]; nucleotide binding [GO:0000166]; nucleotide catabolic process [GO:0009166]nucleotide catabolic process [GO:0009166]hydrolase activity [GO:0016787]; nucleotide binding [GO:0000166]GO:0000166; GO:0009166; GO:001678724402279Transcript_07329Assembly01_TRINITY_DN26756_c0_g1::Assembly01_TRINITY_DN26756_c0_g1_i1::g.138001::m.138001XP_007891772.1V9KJF0V9KJF0_CALMIunreviewedRas-related C3 botulinum toxin substrate 1Callorhinchus milii (Ghost shark)192intracellular [GO:0005622]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264]small GTPase mediated signal transduction [GO:0007264]GTP binding [GO:0005525]intracellular [GO:0005622]GO:0005525; GO:0005622; GO:000726424402279Transcript_07397Assembly01_TRINITY_DN26903_c0_g1::Assembly01_TRINITY_DN26903_c0_g1_i1::g.171676::m.171676XP_007887805.1V9K919V9K919_CALMIunreviewedExocyst complex component 2Callorhinchus milii (Ghost shark)925exocyst [GO:0000145]; Golgi to plasma membrane transport [GO:0006893]Golgi to plasma membrane transport [GO:0006893]exocyst [GO:0000145]GO:0000145; GO:000689324402279Transcript_07409Assembly01_TRINITY_DN26933_c0_g1::Assembly01_TRINITY_DN26933_c0_g1_i1::g.171804::m.171804XP_007899681.1V9LEL6V9LEL6_CALMIunreviewedSmall ubiquitin-related modifier (SUMO)Callorhinchus milii (Ghost shark)100nucleus [GO:0005634]; protein sumoylation [GO:0016925]protein sumoylation [GO:0016925]nucleus [GO:0005634]GO:0005634; GO:0016925SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU361190}.24402279Transcript_07546Assembly01_TRINITY_DN27209_c0_g1::Assembly01_TRINITY_DN27209_c0_g1_i1::g.178036::m.178036XP_007904773.1V9KW27V9KW27_CALMIunreviewedDyslexia susceptibility 1 candidate 1Callorhinchus milii (Ghost shark)44224402279Transcript_07614Assembly01_TRINITY_DN27339_c0_g1::Assembly01_TRINITY_DN27339_c0_g1_i1::g.83879::m.83879XP_007892364.1V9LAS5V9LAS5_CALMIunreviewedPutative methyltransferase ydaC-like proteinCallorhinchus milii (Ghost shark)211methyltransferase activity [GO:0008168]methyltransferase activity [GO:0008168]GO:000816824402279Transcript_07642Assembly01_TRINITY_DN27384_c0_g1::Assembly01_TRINITY_DN27384_c0_g1_i1::g.83935::m.83935XP_007902785.1V9KRW9V9KRW9_CALMIunreviewedAnnexinCallorhinchus milii (Ghost shark)324calcium ion binding [GO:0005509]; calcium-dependent phospholipid binding [GO:0005544]calcium-dependent phospholipid binding [GO:0005544]; calcium ion binding [GO:0005509]GO:0005509; GO:000554424402279Transcript_07657Assembly01_TRINITY_DN27414_c0_g2::Assembly01_TRINITY_DN27414_c0_g2_i1::g.209214::m.209214XP_007907762.1V9L4H7V9L4H7_CALMIunreviewedTranscription factor VBPCallorhinchus milii (Ghost shark)274nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription from RNA polymerase II promoter [GO:0006357]regulation of transcription from RNA polymerase II promoter [GO:0006357]sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]nucleus [GO:0005634]GO:0003700; GO:0005634; GO:0006357; GO:004356524402279Transcript_07695Assembly01_TRINITY_DN27500_c1_g1::Assembly01_TRINITY_DN27500_c1_g1_i1::g.150441::m.150441XP_007906130.1V9KJ65V9KJ65_CALMIunreviewedCirhinCallorhinchus milii (Ghost shark)68324402279Transcript_07711Assembly01_TRINITY_DN27519_c0_g1::Assembly01_TRINITY_DN27519_c0_g1_i1::g.150562::m.150562XP_007886104.1V9KZH8V9KZH8_CALMIunreviewedIntegral membrane protein 2C-like proteinCallorhinchus milii (Ghost shark)256integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_07751Assembly01_TRINITY_DN27593_c0_g2::Assembly01_TRINITY_DN27593_c0_g2_i1::g.150413::m.150413XP_007901760.1V9KJA3V9KJA3_CALMIunreviewed1,4-alpha-glucan-branching enzymeCallorhinchus milii (Ghost shark)6851,4-alpha-glucan branching enzyme activity [GO:0003844]; cation binding [GO:0043169]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]; glycogen biosynthetic process [GO:0005978]glycogen biosynthetic process [GO:0005978]1,4-alpha-glucan branching enzyme activity [GO:0003844]; cation binding [GO:0043169]; hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]GO:0003844; GO:0004553; GO:0005978; GO:004316924402279Transcript_07787Assembly01_TRINITY_DN27650_c0_g1::Assembly01_TRINITY_DN27650_c0_g1_i1::g.129468::m.129468XP_007905822.1V9KU01V9KU01_CALMIunreviewedADP-sugar pyrophosphataseCallorhinchus milii (Ghost shark)213hydrolase activity [GO:0016787]hydrolase activity [GO:0016787]GO:001678724402279Transcript_07862Assembly01_TRINITY_DN27753_c0_g1::Assembly01_TRINITY_DN27753_c0_g1_i1::g.6460::m.6460XP_007891309.1V9K8B7V9K8B7_CALMIunreviewedPeptidyl-glycine alpha-amidating monooxygenaseCallorhinchus milii (Ghost shark)976integral component of membrane [GO:0016021]; copper ion binding [GO:0005507]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen [GO:0016715]; peptide metabolic process [GO:0006518]peptide metabolic process [GO:0006518]copper ion binding [GO:0005507]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen [GO:0016715]integral component of membrane [GO:0016021]GO:0005507; GO:0006518; GO:0016021; GO:001671524402279Transcript_07878Assembly01_TRINITY_DN27774_c0_g1::Assembly01_TRINITY_DN27774_c0_g1_i1::g.6439::m.6439XP_007893788.1V9LDG1V9LDG1_CALMIunreviewedtRNA-splicing endonuclease subunit Sen15Callorhinchus milii (Ghost shark)172tRNA-intron endonuclease activity [GO:0000213]; tRNA splicing, via endonucleolytic cleavage and ligation [GO:0006388]tRNA splicing, via endonucleolytic cleavage and ligation [GO:0006388]tRNA-intron endonuclease activity [GO:0000213]GO:0000213; GO:000638824402279Transcript_07882Assembly01_TRINITY_DN27776_c0_g1::Assembly01_TRINITY_DN27776_c0_g1_i2::g.6373::m.6373XP_007904151.1V9LG09V9LG09_CALMIunreviewedMitochondrial ribosomal protein S6Callorhinchus milii (Ghost shark)122ribosome [GO:0005840]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; translation [GO:0006412]translation [GO:0006412]rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]ribosome [GO:0005840]GO:0003735; GO:0005840; GO:0006412; GO:001984324402279Transcript_07890Assembly01_TRINITY_DN27792_c0_g1::Assembly01_TRINITY_DN27792_c0_g1_i1::g.6755::m.6755XP_007899362.1V9L2X6V9L2X6_CALMIunreviewedRWD domain-containing protein 2B-like proteinCallorhinchus milii (Ghost shark)29124402279Transcript_07897Assembly01_TRINITY_DN27799_c0_g1::Assembly01_TRINITY_DN27799_c0_g1_i1::g.6485::m.6485XP_007886710.1V9KW79V9KW79_CALMIunreviewedSplicing factor, arginine/serine-rich 2Callorhinchus milii (Ghost shark)215nucleotide binding [GO:0000166]; RNA binding [GO:0003723]nucleotide binding [GO:0000166]; RNA binding [GO:0003723]GO:0000166; GO:000372324402279Transcript_07957Assembly01_TRINITY_DN27887_c0_g1::Assembly01_TRINITY_DN27887_c0_g1_i1::g.114965::m.114965XP_007894824.1V9K7J2V9K7J2_CALMIunreviewedPRP8 pre-mRNA processing factor 8-like proteinCallorhinchus milii (Ghost shark)2333spliceosomal complex [GO:0005681]; U5 snRNA binding [GO:0030623]; U6 snRNA binding [GO:0017070]; mRNA splicing, via spliceosome [GO:0000398]mRNA splicing, via spliceosome [GO:0000398]U5 snRNA binding [GO:0030623]; U6 snRNA binding [GO:0017070]spliceosomal complex [GO:0005681]GO:0000398; GO:0005681; GO:0017070; GO:003062324402279Transcript_08051Assembly01_TRINITY_DN28017_c0_g1::Assembly01_TRINITY_DN28017_c0_g1_i1::g.100875::m.100875XP_007908021.1V9KRM0V9KRM0_CALMIunreviewedXylulose kinase-like proteinCallorhinchus milii (Ghost shark)528kinase activity [GO:0016301]; phosphotransferase activity, alcohol group as acceptor [GO:0016773]; carbohydrate metabolic process [GO:0005975]carbohydrate metabolic process [GO:0005975]kinase activity [GO:0016301]; phosphotransferase activity, alcohol group as acceptor [GO:0016773]GO:0005975; GO:0016301; GO:001677324402279Transcript_08059Assembly01_TRINITY_DN28028_c0_g1::Assembly01_TRINITY_DN28028_c0_g1_i1::g.100811::m.100811XP_007891878.1V9KT32V9KT32_CALMIunreviewedClusterin-associated protein 1-like proteinCallorhinchus milii (Ghost shark)41524402279Transcript_08129Assembly01_TRINITY_DN28113_c0_g1::Assembly01_TRINITY_DN28113_c0_g1_i2::g.126011::m.126011XP_007897682.1V9KFY9V9KFY9_CALMIunreviewedAMP deaminase 2-like proteinCallorhinchus milii (Ghost shark)801AMP deaminase activity [GO:0003876]; IMP salvage [GO:0032264]IMP salvage [GO:0032264]AMP deaminase activity [GO:0003876]GO:0003876; GO:003226424402279Transcript_08153Assembly01_TRINITY_DN28155_c0_g1::Assembly01_TRINITY_DN28155_c0_g1_i1::g.126071::m.126071XP_007910704.1V9L7S0V9L7S0_CALMIunreviewedMps one binder kinase activator-like 2Callorhinchus milii (Ghost shark)251kinase activity [GO:0016301]kinase activity [GO:0016301]GO:001630124402279Transcript_08176Assembly01_TRINITY_DN28182_c0_g1::Assembly01_TRINITY_DN28182_c0_g1_i1::g.125902::m.125902XP_007898016.1V9LDR1V9LDR1_CALMIunreviewedTransmembrane protein 205-like proteinCallorhinchus milii (Ghost shark)193integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_08178Assembly01_TRINITY_DN28187_c0_g1::Assembly01_TRINITY_DN28187_c0_g1_i1::g.125965::m.125965XP_007888502.1V9L718V9L718_CALMIunreviewedUncharacterized proteinCallorhinchus milii (Ghost shark)160integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_08273Assembly01_TRINITY_DN28332_c0_g1::Assembly01_TRINITY_DN28332_c0_g1_i1::g.13021::m.13021XP_007908018.1V9KX15V9KX15_CALMIunreviewedDNA repair protein XRCC2Callorhinchus milii (Ghost shark)285Rad51B-Rad51C-Rad51D-XRCC2 complex [GO:0033063]; replication fork [GO:0005657]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-dependent ATPase activity [GO:0008094]; double-strand break repair via homologous recombination [GO:0000724]double-strand break repair via homologous recombination [GO:0000724]ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-dependent ATPase activity [GO:0008094]Rad51B-Rad51C-Rad51D-XRCC2 complex [GO:0033063]; replication fork [GO:0005657]GO:0000724; GO:0003677; GO:0005524; GO:0005657; GO:0008094; GO:003306324402279Transcript_08301Assembly01_TRINITY_DN28376_c0_g4::Assembly01_TRINITY_DN28376_c0_g4_i1::g.13205::m.13205XP_007890950.1V9L5J2V9L5J2_CALMIunreviewedPutative polyprenol reductaseCallorhinchus milii (Ghost shark)318cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]; oxidoreductase activity, acting on the CH-CH group of donors [GO:0016627]; lipid metabolic process [GO:0006629]lipid metabolic process [GO:0006629]oxidoreductase activity, acting on the CH-CH group of donors [GO:0016627]cytoplasm [GO:0005737]; integral component of membrane [GO:0016021]GO:0005737; GO:0006629; GO:0016021; GO:001662724402279Transcript_08372Assembly01_TRINITY_DN28466_c0_g1::Assembly01_TRINITY_DN28466_c0_g1_i2::g.58418::m.58418XP_007889163.1V9KHY0V9KHY0_CALMIunreviewedMembrane protein MLC1-like proteinCallorhinchus milii (Ghost shark)379integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_08387Assembly01_TRINITY_DN28487_c0_g2::Assembly01_TRINITY_DN28487_c0_g2_i1::g.58384::m.58384XP_007902663.1V9KSI4V9KSI4_CALMIunreviewedCysteine string protein-like proteinCallorhinchus milii (Ghost shark)18824402279Transcript_08415Assembly01_TRINITY_DN28516_c0_g1::Assembly01_TRINITY_DN28516_c0_g1_i1::g.44537::m.44537XP_007910471.1V9KT21V9KT21_CALMIunreviewedUDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase-like proteinCallorhinchus milii (Ghost shark)406integral component of membrane [GO:0016021]; phospho-N-acetylmuramoyl-pentapeptide-transferase activity [GO:0008963]; UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity [GO:0003975]; dolichol-linked oligosaccharide biosynthetic process [GO:0006488]; protein N-linked glycosylation [GO:0006487]dolichol-linked oligosaccharide biosynthetic process [GO:0006488]; protein N-linked glycosylation [GO:0006487]phospho-N-acetylmuramoyl-pentapeptide-transferase activity [GO:0008963]; UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity [GO:0003975]integral component of membrane [GO:0016021]GO:0003975; GO:0006487; GO:0006488; GO:0008963; GO:001602124402279Transcript_08509Assembly01_TRINITY_DN28664_c0_g1::Assembly01_TRINITY_DN28664_c0_g1_i1::g.182083::m.182083XP_007898215.1V9KD41V9KD41_CALMIunreviewedGTP-binding protein Di-Ras2-like proteinCallorhinchus milii (Ghost shark)198intracellular [GO:0005622]; membrane [GO:0016020]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264]small GTPase mediated signal transduction [GO:0007264]GTP binding [GO:0005525]intracellular [GO:0005622]; membrane [GO:0016020]GO:0005525; GO:0005622; GO:0007264; GO:001602024402279Transcript_08510Assembly01_TRINITY_DN28670_c0_g1::Assembly01_TRINITY_DN28670_c0_g1_i1::g.181957::m.181957XP_007897099.1V9L944V9L944_CALMIunreviewedUncharacterized proteinCallorhinchus milii (Ghost shark)18924402279Transcript_08528Assembly01_TRINITY_DN28691_c0_g2::Assembly01_TRINITY_DN28691_c0_g2_i1::g.182036::m.182036XP_007898223.1V9KJX3V9KJX3_CALMIunreviewedNuclear factor interleukin-3-regulated protein-like proteinCallorhinchus milii (Ghost shark)505nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; circadian rhythm [GO:0007623]; immune response [GO:0006955]; transcription from RNA polymerase II promoter [GO:0006366]circadian rhythm [GO:0007623]; immune response [GO:0006955]; transcription from RNA polymerase II promoter [GO:0006366]sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]nucleus [GO:0005634]GO:0003700; GO:0005634; GO:0006366; GO:0006955; GO:0007623; GO:004356524402279Transcript_08654Assembly01_TRINITY_DN28841_c0_g1::Assembly01_TRINITY_DN28841_c0_g1_i1::g.205924::m.205924XP_007893681.1V9KMH8V9KMH8_CALMIunreviewedNuclear receptor subfamily 1 group D member 2Callorhinchus milii (Ghost shark)558nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; steroid hormone receptor activity [GO:0003707]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]; transcription, DNA-templated [GO:0006351]transcription, DNA-templated [GO:0006351]sequence-specific DNA binding [GO:0043565]; steroid hormone receptor activity [GO:0003707]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]nucleus [GO:0005634]GO:0003700; GO:0003707; GO:0005634; GO:0006351; GO:0008270; GO:0043565SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU004334, ECO:0000256|SAAS:SAAS00595767}.24402279Transcript_08661Assembly01_TRINITY_DN28845_c0_g1::Assembly01_TRINITY_DN28845_c0_g1_i5::g.205804::m.205804XP_007890372.1V9KGM7V9KGM7_CALMIunreviewedPutative ATP-dependent RNA helicase DDX4-like proteinCallorhinchus milii (Ghost shark)701ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676]ATP binding [GO:0005524]; helicase activity [GO:0004386]; nucleic acid binding [GO:0003676]GO:0003676; GO:0004386; GO:000552424402279Transcript_08747Assembly01_TRINITY_DN28954_c1_g2::Assembly01_TRINITY_DN28954_c1_g2_i1::g.69250::m.69250XP_007897490.1V9KSR0V9KSR0_CALMIunreviewedHeat shock factor protein 2-like proteinCallorhinchus milii (Ghost shark)507nucleus [GO:0005634]; sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; regulation of transcription from RNA polymerase II promoter [GO:0006357]regulation of transcription from RNA polymerase II promoter [GO:0006357]sequence-specific DNA binding [GO:0043565]; transcription factor activity, sequence-specific DNA binding [GO:0003700]nucleus [GO:0005634]GO:0003700; GO:0005634; GO:0006357; GO:0043565SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00535900}.24402279Transcript_08774Assembly01_TRINITY_DN28983_c0_g1::Assembly01_TRINITY_DN28983_c0_g1_i2::g.68899::m.68899XP_007898941.1V9KRG7V9KRG7_CALMIunreviewedTranscriptional adaptor 2 (ADA2-like)-like proteinCallorhinchus milii (Ghost shark)445nucleus [GO:0005634]; DNA binding [GO:0003677]; histone acetylation [GO:0016573]; regulation of transcription from RNA polymerase II promoter [GO:0006357]histone acetylation [GO:0016573]; regulation of transcription from RNA polymerase II promoter [GO:0006357]DNA binding [GO:0003677]nucleus [GO:0005634]GO:0003677; GO:0005634; GO:0006357; GO:0016573SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00548613}.24402279Transcript_08845Assembly01_TRINITY_DN29071_c0_g1::Assembly01_TRINITY_DN29071_c0_g1_i1::g.26735::m.26735XP_007884921.1V9LCS2V9LCS2_CALMIunreviewedL antigen family member 3Callorhinchus milii (Ghost shark)10924402279Transcript_08884Assembly01_TRINITY_DN29123_c1_g1::Assembly01_TRINITY_DN29123_c1_g1_i1::g.166684::m.166684XP_007907001.1V9KE68V9KE68_CALMIunreviewedSerine/threonine-protein kinase SIK2-like proteinCallorhinchus milii (Ghost shark)798ATP binding [GO:0005524]; protein kinase activity [GO:0004672]ATP binding [GO:0005524]; protein kinase activity [GO:0004672]GO:0004672; GO:000552424402279Transcript_08899Assembly01_TRINITY_DN2913_c0_g1::Assembly01_TRINITY_DN2913_c0_g1_i1::g.38146::m.38146XP_007903155.1V9KII1V9KII1_CALMIunreviewedRas-related protein Rap-1bCallorhinchus milii (Ghost shark)184intracellular [GO:0005622]; membrane [GO:0016020]; GTP binding [GO:0005525]; small GTPase mediated signal transduction [GO:0007264]small GTPase mediated signal transduction [GO:0007264]GTP binding [GO:0005525]intracellular [GO:0005622]; membrane [GO:0016020]GO:0005525; GO:0005622; GO:0007264; GO:001602024402279Transcript_08912Assembly01_TRINITY_DN29152_c1_g1::Assembly01_TRINITY_DN29152_c1_g1_i1::g.166862::m.166862XP_007894142.1K4GDE2K4GDE2_CALMIunreviewedHigh mobility group protein (High mobility group protein B1-like protein)Callorhinchus milii (Ghost shark)213DNA binding [GO:0003677]; regulation of cell differentiation [GO:0045595]; regulation of transcription, DNA-templated [GO:0006355]; spermatogenesis [GO:0007283]regulation of cell differentiation [GO:0045595]; regulation of transcription, DNA-templated [GO:0006355]; spermatogenesis [GO:0007283]DNA binding [GO:0003677]GO:0003677; GO:0006355; GO:0007283; GO:0045595Transcript_08921Assembly01_TRINITY_DN29159_c0_g1::Assembly01_TRINITY_DN29159_c0_g1_i2::g.166962::m.166962XP_007890904.1V9KDM9V9KDM9_CALMIunreviewedNF-X1-type zinc finger protein NFXL1Callorhinchus milii (Ghost shark)888integral component of membrane [GO:0016021]; nucleus [GO:0005634]; transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]transcription factor activity, sequence-specific DNA binding [GO:0003700]; zinc ion binding [GO:0008270]integral component of membrane [GO:0016021]; nucleus [GO:0005634]GO:0003700; GO:0005634; GO:0008270; GO:001602124402279Transcript_08966Assembly01_TRINITY_DN29198_c0_g1::Assembly01_TRINITY_DN29198_c0_g1_i1::g.167220::m.167220XP_007896933.1V9L111V9L111_CALMIunreviewedSpindlin-1Callorhinchus milii (Ghost shark)236gamete generation [GO:0007276]gamete generation [GO:0007276]GO:000727624402279Transcript_09042Assembly01_TRINITY_DN29290_c0_g1::Assembly01_TRINITY_DN29290_c0_g1_i3::g.103917::m.103917XP_007894339.1V9KFX4V9KFX4_CALMIunreviewedMitochondrial fission factor-like proteinCallorhinchus milii (Ghost shark)308integral component of membrane [GO:0016021]integral component of membrane [GO:0016021]GO:001602124402279Transcript_09066Assembly01_TRINITY_DN29332_c0_g1::Assembly01_TRINITY_DN29332_c0_g1_i3::g.21610::m.21610XP_007910452.1V9KF75V9KF75_CALMIunreviewedNuclear receptor coactivator 5Callorhinchus milii (Ghost shark)605nucleic acid binding [GO:0003676]; nucleotide binding [GO:0000166]nucleic acid binding [GO:0003676]; nucleotide binding [GO:0000166]GO:0000166; GO:000367624402279Transcript_09069Assembly01_TRINITY_DN29335_c0_g1::Assembly01_TRINITY_DN29335_c0_g1_i1::g.21479::m.21479XP_007894798.1V9L7B2V9L7B2_CALMIunreviewedRab effector Noc2-like proteinCallorhinchus milii (Ghost shark)271intracellular [GO:0005622]; metal ion binding [GO:0046872]; intracellular protein transport [GO:0006886]; regulation of exocytosis [GO:0017157]intracellular protein transport [GO:0006886]; regulation of exocytosis [GO:0017157]metal ion binding [GO:0046872]intracellular [GO:0005622]GO:0005622; GO:0006886; GO:0017157; GO:004687224402279Transcript_09071Assembly01_TRINITY_DN29338_c0_g1::Assembly01_TRINITY_DN29338_c0_g1_i1::g.21831::m.21831XP_007910135.1V9KA72V9KA72_CALMIunreviewedMps one binder kinase activator-like 1B-like proteinCallorhinchu